Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold6
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 17077
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Found at i:326 original size:17 final size:17
Alignment explanation
Indices: 304--351 Score: 87
Period size: 17 Copynumber: 2.8 Consensus size: 17
294 GAGTGCAAGT
304 AGATGCTAGAGGGAACG
1 AGATGCTAGAGGGAACG
*
321 AGATGCTAAAGGGAACG
1 AGATGCTAGAGGGAACG
338 AGATGCTAGAGGGA
1 AGATGCTAGAGGGA
352 CCGAAAGCCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.38, C:0.10, G:0.40, T:0.12
Consensus pattern (17 bp):
AGATGCTAGAGGGAACG
Left flanking sequence: Indices 1 -- 303
TCTGAGGTGCATTGGTGGCACCCGCGCTTGCTACCAGGGACGGCTCGACCTGGTTCGGATTGGAT
GAGGTATAGAGAAGAAAAAACTGGTTGGAGGGGGTACCAGCGTATTTATGGTATGTGGGAATTGT
TGTGCAGGCTGGCAGAGTCTTTGTGGTTGGCAGAGTAGGCGTCACTTGGAGGGAAAGAGCAGCTG
TGGAAGGTCATGGAAGGGCCCAAATGGCCTTTAGTGTGTAGAGCGGCCTTCCTGGCAGTGGTTGG
GGCCTATATTATTGGTATGAGGTGGCATGGAAAGAGTGCAAGT
Right flanking sequence: Indices 352 -- 851
CCGAAAGCCATCGGTGTTACAGATTACCAGTGCAAAGGCCACACAGTATAGTCCTATGGTGTTCT
CTCTTTGTTTCAAGGTGATTGAGTATGACTTCCCAAAGCGGTAATATGCACCAATTTTGCACCAG
ACGATATCGATTCGGTTTGCAACCAACACAGTTTTCGATGAGGGAAAGAAATGAAAGGGACTGAA
GGAGGGTCAAAAGTTTCTTTCAACTGTGGTAACGACGGAAGTTGCTATTGTAGATCTCACAAGGT
GGACCTCAGGTGTTGCTCTCAACCAAAACCTCCTTGGGAAAGGATCGAATCAGCCTGATCGATAG
GGTCGTTGATCGGTTCTGCTGCAGTCTAAGCAAGTTTTGCGGACCCAATGAGCTCTCGTCGGCTA
AGTGATTGACCGATTGAGAGCCAACGATAGCATAAGAGGCACTTTTTGACCACCACACACAACAC
CATCACGAGGCCAACCTGTCCCTAGGATCAACCCAGTTGAGACAC
Found at i:1667 original size:17 final size:17
Alignment explanation
Indices: 1623--1687 Score: 94
Period size: 17 Copynumber: 3.8 Consensus size: 17
1613 GAGACGAGTA
*
1623 AACAATATGGCTCTTAC
1 AACAATATGGTTCTTAC
*
1640 AAACATTATGGTTCTTAC
1 -AACAATATGGTTCTTAC
*
1658 AACAACATGGTTCTTAC
1 AACAATATGGTTCTTAC
1675 AACAATATGGTTC
1 AACAATATGGTTC
1688 CTACCATTTC
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
17 27 0.64
18 15 0.36
ACGTcount: A:0.35, C:0.20, G:0.12, T:0.32
Consensus pattern (17 bp):
AACAATATGGTTCTTAC
Left flanking sequence: Indices 1123 -- 1622
CCGACTGGGGAACGAGGCGTGGGCTCACAATATACGAGGGACCCTGATGGGCCCTGGGCTCGCAA
TCTGTGCCAAGCCCGGCCAGGGTTCGTAGTATGATTGCTCCGGCGGCTTCGCCGTGTGGACTCCG
GCGGGGAGGGGAAGCGGTGAGGGGGAATGGAACCGACAAAGGGCATCACCGAGCCAGCTGGCGCG
CTCGGAACATTCCTCCGACGCGCGGTAACGTGCTTCTGTGGAGTTGCCAACACTCGCCCGACGGG
TGACCACGGCCCAACAATGGCCAACAGCCCACCGGACCCATAGGCGTTATTTTGCAGCCCGACAC
AGGTTTGCAGCCACTGTCGCCCCTATTGTGTCCACACTAACCGTTAGGGTAATGGAACCCAAACC
TTAATTGTCGTTGCATTGACACTCGGGGAAATGAAACGGTGGGGCAGATGGTGGGGTACCACAAC
AAGCGTGACTAACCAGAGGAGGGTCAGATGGGTTAGAGACGAGTA
Right flanking sequence: Indices 1688 -- 2187
CTACCATTTCTACCTGTTGACCACTACCCTGTTACCAAAACCTTCCCTGTATTAAATATATGCGA
TGGTGGCACCAGGCCACTTCCAACCGTTTTCTCTTCCAACCGTTACCTTAAACCTTGCCGAGTAG
CGTCCGCGGGTTGGCGAACCCCTTGATCTTGGGATCGATGTGGGTTTCTTGGTACGACAACAAGA
AGGGGACCGTCAGCGACACGCCCAAGTAGGCTAACATGAGGGTGGATTTACCAATAACAGCTTTC
ATTGTGACTAGGGTCACCGGGGTACCCGACGGCTTTTATACTTCTGGTTAGTAATTAGGTAATAA
TTGCCCCATCATTGTGGCTCCGTGGCGCGACGCGATCCCAACAATGGTTACGAGACGTGGGCGAA
GCGGCGGACAATGGGGAAAAGTGGGCCGGAGTTTGGTTACCTATGCTTTGATACTGAATATCTAT
GTACGTGGGGGTCCCGGGGCCGCTCCCGGTGGGTTTCGCCCGCCA
Found at i:2311 original size:13 final size:13
Alignment explanation
Indices: 2293--2320 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
2283 GCCTGATTTG
2293 GGTGGGGAGCGAT
1 GGTGGGGAGCGAT
2306 GGTGGGGAGCGAT
1 GGTGGGGAGCGAT
2319 GG
1 GG
2321 GAGGCTTTGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.07, G:0.64, T:0.14
Consensus pattern (13 bp):
GGTGGGGAGCGAT
Left flanking sequence: Indices 1793 -- 2292
CGTTACCTTAAACCTTGCCGAGTAGCGTCCGCGGGTTGGCGAACCCCTTGATCTTGGGATCGATG
TGGGTTTCTTGGTACGACAACAAGAAGGGGACCGTCAGCGACACGCCCAAGTAGGCTAACATGAG
GGTGGATTTACCAATAACAGCTTTCATTGTGACTAGGGTCACCGGGGTACCCGACGGCTTTTATA
CTTCTGGTTAGTAATTAGGTAATAATTGCCCCATCATTGTGGCTCCGTGGCGCGACGCGATCCCA
ACAATGGTTACGAGACGTGGGCGAAGCGGCGGACAATGGGGAAAAGTGGGCCGGAGTTTGGTTAC
CTATGCTTTGATACTGAATATCTATGTACGTGGGGGTCCCGGGGCCGCTCCCGGTGGGTTTCGCC
CGCCAAACAGGGGTTCCCGTTGGCAGGGCGGTGGGCCCCTGGTTGCGAGCGCGCGGCGTTACTCA
TTTTTTACTCGCATGGACTCTCGGAAAAATAAATCGCCTGATTTG
Right flanking sequence: Indices 2321 -- 2820
GAGGCTTTGGGAGGCTTTGGGTGGAATGGTAGTGGGACTGGGTAGTAAAAGGTAGTAGAAATGTG
TGGTAGAAATGGGGTAGTAGAAAGGGAAGGCAGTGATAGCAGTGGGATAGCCATAGCTAGAGTGG
CCAAGGTCGCAGGCTTGATGCTCGCATGGTTGCTAGTGTGGCGGTAACCAGCGCGATAAGGTCAG
CCGTGGTAAGCAGACCCGAAGCCACCTGAGAGCCACCCGAAGAAATCACAAGAAGCACCCAACAA
AGAACGTCAAACAAACGAGCTTGAATACAGAACCGTCGTATTAACCTGTAGTTATTGCAACCTAG
TTATTGCAACCTAGTTCTTGCAACCTCTCGTTTGCAGCCATAGCGATTCTTTTTTCTCAACGTTT
TTTAACCTGGTTCAACCTGTCTCCACCTGTCTCAACCTGTCTCAACCTTTTTCTTTTTTCCACTA
TCTCTAGCGTAGATCTCGCTTCGCTTCTGGTACCTTTTTTCGGTC
Found at i:2407 original size:14 final size:13
Alignment explanation
Indices: 2359--2408 Score: 52
Period size: 13 Copynumber: 4.0 Consensus size: 13
2349 GTAGTGGGAC
2359 TGGGTAGTA-AAA
1 TGGGTAGTAGAAA
2371 --GGTAGTAGAAA
1 TGGGTAGTAGAAA
* *
2382 TGTGTGGTAGAAA
1 TGGGTAGTAGAAA
2395 TGGGGTAGTAGAAA
1 T-GGGTAGTAGAAA
2409 GGGAAGGCAG
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
10 7 0.23
11 3 0.10
13 10 0.33
14 10 0.33
ACGTcount: A:0.38, C:0.00, G:0.38, T:0.24
Consensus pattern (13 bp):
TGGGTAGTAGAAA
Left flanking sequence: Indices 1859 -- 2358
GGGTTTCTTGGTACGACAACAAGAAGGGGACCGTCAGCGACACGCCCAAGTAGGCTAACATGAGG
GTGGATTTACCAATAACAGCTTTCATTGTGACTAGGGTCACCGGGGTACCCGACGGCTTTTATAC
TTCTGGTTAGTAATTAGGTAATAATTGCCCCATCATTGTGGCTCCGTGGCGCGACGCGATCCCAA
CAATGGTTACGAGACGTGGGCGAAGCGGCGGACAATGGGGAAAAGTGGGCCGGAGTTTGGTTACC
TATGCTTTGATACTGAATATCTATGTACGTGGGGGTCCCGGGGCCGCTCCCGGTGGGTTTCGCCC
GCCAAACAGGGGTTCCCGTTGGCAGGGCGGTGGGCCCCTGGTTGCGAGCGCGCGGCGTTACTCAT
TTTTTACTCGCATGGACTCTCGGAAAAATAAATCGCCTGATTTGGGTGGGGAGCGATGGTGGGGA
GCGATGGGAGGCTTTGGGAGGCTTTGGGTGGAATGGTAGTGGGAC
Right flanking sequence: Indices 2409 -- 2908
GGGAAGGCAGTGATAGCAGTGGGATAGCCATAGCTAGAGTGGCCAAGGTCGCAGGCTTGATGCTC
GCATGGTTGCTAGTGTGGCGGTAACCAGCGCGATAAGGTCAGCCGTGGTAAGCAGACCCGAAGCC
ACCTGAGAGCCACCCGAAGAAATCACAAGAAGCACCCAACAAAGAACGTCAAACAAACGAGCTTG
AATACAGAACCGTCGTATTAACCTGTAGTTATTGCAACCTAGTTATTGCAACCTAGTTCTTGCAA
CCTCTCGTTTGCAGCCATAGCGATTCTTTTTTCTCAACGTTTTTTAACCTGGTTCAACCTGTCTC
CACCTGTCTCAACCTGTCTCAACCTTTTTCTTTTTTCCACTATCTCTAGCGTAGATCTCGCTTCG
CTTCTGGTACCTTTTTTCGGTCTGGTCCATGTCTCGGTCCTTGTCTCGGTCCACGCCCGCCTACT
CTTGTTGCACCTTCGCGTACGACGGGGGCCGGATCTTGCGGTCGA
Found at i:2646 original size:14 final size:14
Alignment explanation
Indices: 2629--2671 Score: 77
Period size: 14 Copynumber: 3.1 Consensus size: 14
2619 TATTAACCTG
2629 TAGTTATTGCAACC
1 TAGTTATTGCAACC
2643 TAGTTATTGCAACC
1 TAGTTATTGCAACC
*
2657 TAGTTCTTGCAACC
1 TAGTTATTGCAACC
2671 T
1 T
2672 CTCGTTTGCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.26, C:0.23, G:0.14, T:0.37
Consensus pattern (14 bp):
TAGTTATTGCAACC
Left flanking sequence: Indices 2129 -- 2628
TACTGAATATCTATGTACGTGGGGGTCCCGGGGCCGCTCCCGGTGGGTTTCGCCCGCCAAACAGG
GGTTCCCGTTGGCAGGGCGGTGGGCCCCTGGTTGCGAGCGCGCGGCGTTACTCATTTTTTACTCG
CATGGACTCTCGGAAAAATAAATCGCCTGATTTGGGTGGGGAGCGATGGTGGGGAGCGATGGGAG
GCTTTGGGAGGCTTTGGGTGGAATGGTAGTGGGACTGGGTAGTAAAAGGTAGTAGAAATGTGTGG
TAGAAATGGGGTAGTAGAAAGGGAAGGCAGTGATAGCAGTGGGATAGCCATAGCTAGAGTGGCCA
AGGTCGCAGGCTTGATGCTCGCATGGTTGCTAGTGTGGCGGTAACCAGCGCGATAAGGTCAGCCG
TGGTAAGCAGACCCGAAGCCACCTGAGAGCCACCCGAAGAAATCACAAGAAGCACCCAACAAAGA
ACGTCAAACAAACGAGCTTGAATACAGAACCGTCGTATTAACCTG
Right flanking sequence: Indices 2672 -- 3171
CTCGTTTGCAGCCATAGCGATTCTTTTTTCTCAACGTTTTTTAACCTGGTTCAACCTGTCTCCAC
CTGTCTCAACCTGTCTCAACCTTTTTCTTTTTTCCACTATCTCTAGCGTAGATCTCGCTTCGCTT
CTGGTACCTTTTTTCGGTCTGGTCCATGTCTCGGTCCTTGTCTCGGTCCACGCCCGCCTACTCTT
GTTGCACCTTCGCGTACGACGGGGGCCGGATCTTGCGGTCGATAAACCGCCCGAGCCACACCGGA
AGCAACGCGATCGCAAGAATCACCGCCGTCTGCCACACAAACGCCACCAGGGCCATGTAGCCCAA
GTCAAAGTAGTCGCCCAAGAAGGGCACCAGCCCCACGTAGATCGCCAACGTCACCACCACCGTCG
CCACCATCACCCTGGTCCACCGGTTGATCGAGAGCCCCACCATCACCAACTCGTTGACGATCAAG
AGCGAGTACGAGAGCGCCACCATCGTCTTGAAGCTCTTCTCGTCG
Found at i:2729 original size:10 final size:10
Alignment explanation
Indices: 2722--2758 Score: 65
Period size: 10 Copynumber: 3.7 Consensus size: 10
2712 TTAACCTGGT
2722 TCAACCTGTC
1 TCAACCTGTC
*
2732 TCCACCTGTC
1 TCAACCTGTC
2742 TCAACCTGTC
1 TCAACCTGTC
2752 TCAACCT
1 TCAACCT
2759 TTTTCTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 25 1.00
ACGTcount: A:0.19, C:0.43, G:0.08, T:0.30
Consensus pattern (10 bp):
TCAACCTGTC
Left flanking sequence: Indices 2222 -- 2721
TGGTTGCGAGCGCGCGGCGTTACTCATTTTTTACTCGCATGGACTCTCGGAAAAATAAATCGCCT
GATTTGGGTGGGGAGCGATGGTGGGGAGCGATGGGAGGCTTTGGGAGGCTTTGGGTGGAATGGTA
GTGGGACTGGGTAGTAAAAGGTAGTAGAAATGTGTGGTAGAAATGGGGTAGTAGAAAGGGAAGGC
AGTGATAGCAGTGGGATAGCCATAGCTAGAGTGGCCAAGGTCGCAGGCTTGATGCTCGCATGGTT
GCTAGTGTGGCGGTAACCAGCGCGATAAGGTCAGCCGTGGTAAGCAGACCCGAAGCCACCTGAGA
GCCACCCGAAGAAATCACAAGAAGCACCCAACAAAGAACGTCAAACAAACGAGCTTGAATACAGA
ACCGTCGTATTAACCTGTAGTTATTGCAACCTAGTTATTGCAACCTAGTTCTTGCAACCTCTCGT
TTGCAGCCATAGCGATTCTTTTTTCTCAACGTTTTTTAACCTGGT
Right flanking sequence: Indices 2759 -- 3258
TTTTCTTTTTTCCACTATCTCTAGCGTAGATCTCGCTTCGCTTCTGGTACCTTTTTTCGGTCTGG
TCCATGTCTCGGTCCTTGTCTCGGTCCACGCCCGCCTACTCTTGTTGCACCTTCGCGTACGACGG
GGGCCGGATCTTGCGGTCGATAAACCGCCCGAGCCACACCGGAAGCAACGCGATCGCAAGAATCA
CCGCCGTCTGCCACACAAACGCCACCAGGGCCATGTAGCCCAAGTCAAAGTAGTCGCCCAAGAAG
GGCACCAGCCCCACGTAGATCGCCAACGTCACCACCACCGTCGCCACCATCACCCTGGTCCACCG
GTTGATCGAGAGCCCCACCATCACCAACTCGTTGACGATCAAGAGCGAGTACGAGAGCGCCACCA
TCGTCTTGAAGCTCTTCTCGTCGTACCCCTGGAAGTACTGCGCCATCAACTGGATCACCAGCCCC
TGGTAGAGCGAGATGAGCACCCACATGAAGAACGTGCGCACCGAG
Found at i:2843 original size:12 final size:12
Alignment explanation
Indices: 2818--2851 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
2808 CCTTTTTTCG
2818 GTCT-GGTCCAT
1 GTCTCGGTCCAT
*
2829 GTCTCGGTCCTT
1 GTCTCGGTCCAT
2841 GTCTCGGTCCA
1 GTCTCGGTCCA
2852 CGCCCGCCTA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 4 0.20
12 16 0.80
ACGTcount: A:0.06, C:0.32, G:0.26, T:0.35
Consensus pattern (12 bp):
GTCTCGGTCCAT
Left flanking sequence: Indices 2318 -- 2817
TGGGAGGCTTTGGGAGGCTTTGGGTGGAATGGTAGTGGGACTGGGTAGTAAAAGGTAGTAGAAAT
GTGTGGTAGAAATGGGGTAGTAGAAAGGGAAGGCAGTGATAGCAGTGGGATAGCCATAGCTAGAG
TGGCCAAGGTCGCAGGCTTGATGCTCGCATGGTTGCTAGTGTGGCGGTAACCAGCGCGATAAGGT
CAGCCGTGGTAAGCAGACCCGAAGCCACCTGAGAGCCACCCGAAGAAATCACAAGAAGCACCCAA
CAAAGAACGTCAAACAAACGAGCTTGAATACAGAACCGTCGTATTAACCTGTAGTTATTGCAACC
TAGTTATTGCAACCTAGTTCTTGCAACCTCTCGTTTGCAGCCATAGCGATTCTTTTTTCTCAACG
TTTTTTAACCTGGTTCAACCTGTCTCCACCTGTCTCAACCTGTCTCAACCTTTTTCTTTTTTCCA
CTATCTCTAGCGTAGATCTCGCTTCGCTTCTGGTACCTTTTTTCG
Right flanking sequence: Indices 2852 -- 3351
CGCCCGCCTACTCTTGTTGCACCTTCGCGTACGACGGGGGCCGGATCTTGCGGTCGATAAACCGC
CCGAGCCACACCGGAAGCAACGCGATCGCAAGAATCACCGCCGTCTGCCACACAAACGCCACCAG
GGCCATGTAGCCCAAGTCAAAGTAGTCGCCCAAGAAGGGCACCAGCCCCACGTAGATCGCCAACG
TCACCACCACCGTCGCCACCATCACCCTGGTCCACCGGTTGATCGAGAGCCCCACCATCACCAAC
TCGTTGACGATCAAGAGCGAGTACGAGAGCGCCACCATCGTCTTGAAGCTCTTCTCGTCGTACCC
CTGGAAGTACTGCGCCATCAACTGGATCACCAGCCCCTGGTAGAGCGAGATGAGCACCCACATGA
AGAACGTGCGCACCGAGAGCGACTTGCCGAGCGTCAACTCGCGGTAGAGCTCCGGGTACAACCGC
GTCAAGTGCTCGTCGATGTCGGTGTCCAACGTCAACGAGAACACC
Found at i:6465 original size:18 final size:18
Alignment explanation
Indices: 6442--6481 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
6432 AACGGTCATA
*
6442 AGTACTAAGTAGTTACTG
1 AGTACTAAGTAGTCACTG
*
6460 AGTACTGAGTAGTCACTG
1 AGTACTAAGTAGTCACTG
6478 AGTA
1 AGTA
6482 GTTATTGGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.33, C:0.12, G:0.25, T:0.30
Consensus pattern (18 bp):
AGTACTAAGTAGTCACTG
Left flanking sequence: Indices 5942 -- 6441
AGCGGTTCAAGAGGGGGACGCCGTGCTCGCTGTCGAGGCTGGCGCGGCCCCGGGTCAACCGGGGG
GTCGCGGCCTCAGACGACGCCGCCAGCGCCAGCGTCTGGCGCTTCATGGTGTGGGGCACCGACAG
CAACGCCCGGTCGAGCGAGCTGTCCAAGTCGTCGTCGAGGTCAAACTGGAACAGGTAGCGCGACA
TGCCCACAGGCTCGGGGTCAGGAGGAGGAAGTGAGGTGTGGGTGAGGTGGTGGAAAAGGTGCGAA
AAGTGCAGCGCGCACAGCAAGGCAGGCGGGAAGCGGCGAGAAAAGCGTGTGGGGATGGGTGGTTT
TTGGGCTAGAGGAGTGGTGGACGGCCAATTGATGGCCAGCGGGCAGCGCAGTCGCCGGCTCGGGT
GTCGGTGGCTTGGTTGACGTGGCGCCTGCACACCGTGGGGTGCGATCAGCCCGACGCGTCAGGCA
CAGACAGTGGTGCTGTGCACCGAGAGGTATTCGCGAACGGTCATA
Right flanking sequence: Indices 6482 -- 6981
GTTATTGGGTAATGTCTATGTAGTCACCGTAGTCACTGTAGTCACAATGCTTCCTACTTACCCAA
TTCTATTGTCCCTTCTTCCCTTCTTCCCTCCCTCCAGGCCCCTCCCCCACGTTCATCACGTGGGT
GCATCTGGGTGCATCGACACATGAGCGACGACGAGCACGAGTTGCTCGTGACCAGGCTGCACCAG
CACGGCGCCGTGGCCGACCCGAGGCTCGCGGCGCTCCAGAGCGACCAGCTCCGCCGCCTGGCGCT
GTGGCTCCGCCGGGTGGCGGAATGGGCCCTGTTGGCCCTTCTCCGCCAGCCCAACCAGCTCGAGC
ACTACGTGTTGCTGCGCGAGCCCAACGACTGCCTGCTCGTGGCCAAGTTCTCGGTGGTGGTGGAC
GTGGATGTGCGCGGCACCGCGATGCTGGTGCCCACGGTGCTGGTGCACACGGTGCACATGCCGCA
CCCGCTCTACAAGTTTGTCAAGAAGGCCGGCGACGCCAAGGTGGC
Found at i:6914 original size:15 final size:15
Alignment explanation
Indices: 6894--6926 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
6884 GGCACCGCGA
*
6894 TGCTGGTGCCCACGG
1 TGCTGGTGCACACGG
6909 TGCTGGTGCACACGG
1 TGCTGGTGCACACGG
6924 TGC
1 TGC
6927 ACATGCCGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.09, C:0.30, G:0.39, T:0.21
Consensus pattern (15 bp):
TGCTGGTGCACACGG
Left flanking sequence: Indices 6394 -- 6893
GCACAGACAGTGGTGCTGTGCACCGAGAGGTATTCGCGAACGGTCATAAGTACTAAGTAGTTACT
GAGTACTGAGTAGTCACTGAGTAGTTATTGGGTAATGTCTATGTAGTCACCGTAGTCACTGTAGT
CACAATGCTTCCTACTTACCCAATTCTATTGTCCCTTCTTCCCTTCTTCCCTCCCTCCAGGCCCC
TCCCCCACGTTCATCACGTGGGTGCATCTGGGTGCATCGACACATGAGCGACGACGAGCACGAGT
TGCTCGTGACCAGGCTGCACCAGCACGGCGCCGTGGCCGACCCGAGGCTCGCGGCGCTCCAGAGC
GACCAGCTCCGCCGCCTGGCGCTGTGGCTCCGCCGGGTGGCGGAATGGGCCCTGTTGGCCCTTCT
CCGCCAGCCCAACCAGCTCGAGCACTACGTGTTGCTGCGCGAGCCCAACGACTGCCTGCTCGTGG
CCAAGTTCTCGGTGGTGGTGGACGTGGATGTGCGCGGCACCGCGA
Right flanking sequence: Indices 6927 -- 7426
ACATGCCGCACCCGCTCTACAAGTTTGTCAAGAAGGCCGGCGACGCCAAGGTGGCCCAGTTGGCG
GCCGAGGTGGCGGAGCTGCCGATGTTTGTGTTTGTCCACGGGCTCGGCGGCCAGATGGCCAATTT
CGAGCCGCTCATGGGCCTCCTTTCCCAGTGCTCGGAGGTGCGGGCCATCGACTTGCCCGGGTTTG
GCAATCTGAGACGGGCCCGGGGGAAGCTGATTGTCGAGATGAGCGACGAGGAGCAGGCCCGGGTG
GACGCCAGCTGGCGGGCCATGGCGTGGAGCGACTTTGAGACCGACAATTTGGTGGAGCTCTTGCG
GCGGTGGCTCGGCCAGGTGGCCCCGGGGCGGAAGGTGGTGCTTGTGGGGCACCTGATGGGCACCC
ACTTGGTGGTGAAGCTTGCGCGGGTGCTTGAGGCGGGCTCGGTGGAGGGGATGGTGTTGTTGTCG
CCTCCCGGGTTGGGAAGGGGAGAGTCTGGAGGCCGTGTTTTGGCC
Found at i:7446 original size:21 final size:21
Alignment explanation
Indices: 7422--7468 Score: 85
Period size: 21 Copynumber: 2.2 Consensus size: 21
7412 GGCCGTGTTT
*
7422 TGGCCCTGGACGCTCGTGGTG
1 TGGCCCTGGACGCCCGTGGTG
7443 TGGCCCTGGACGCCCGTGGTG
1 TGGCCCTGGACGCCCGTGGTG
7464 TGGCC
1 TGGCC
7469 AGTGGCTCCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.04, C:0.32, G:0.43, T:0.21
Consensus pattern (21 bp):
TGGCCCTGGACGCCCGTGGTG
Left flanking sequence: Indices 6922 -- 7421
GGTGCACATGCCGCACCCGCTCTACAAGTTTGTCAAGAAGGCCGGCGACGCCAAGGTGGCCCAGT
TGGCGGCCGAGGTGGCGGAGCTGCCGATGTTTGTGTTTGTCCACGGGCTCGGCGGCCAGATGGCC
AATTTCGAGCCGCTCATGGGCCTCCTTTCCCAGTGCTCGGAGGTGCGGGCCATCGACTTGCCCGG
GTTTGGCAATCTGAGACGGGCCCGGGGGAAGCTGATTGTCGAGATGAGCGACGAGGAGCAGGCCC
GGGTGGACGCCAGCTGGCGGGCCATGGCGTGGAGCGACTTTGAGACCGACAATTTGGTGGAGCTC
TTGCGGCGGTGGCTCGGCCAGGTGGCCCCGGGGCGGAAGGTGGTGCTTGTGGGGCACCTGATGGG
CACCCACTTGGTGGTGAAGCTTGCGCGGGTGCTTGAGGCGGGCTCGGTGGAGGGGATGGTGTTGT
TGTCGCCTCCCGGGTTGGGAAGGGGAGAGTCTGGAGGCCGTGTTT
Right flanking sequence: Indices 7469 -- 7968
AGTGGCTCCACCGTGCTGGGCACCTCTGACCCTCTCAACTTGGAGGAACCCTCCTCCGGGAAGGA
AGCCACCGGGACCACCACGGGCCGGGCTGGTGGCCAAGCCACAGACTCAACAGACAAGAAAAACA
CTCTGCCAGCCTCTCAGACCGTTTCTCCTTCTCAAACCGTCTCTCCTTCCCGTTCTCCCCCCGTC
GTTCCCCCCCTGCTCCGCTTCTTTGCCCGTTTTCCCCGCCTCTTCGACCTCTTCCGGGTCTGGGA
CCGCCTCCGCGGGCTCGACTCCCACCTGGTGACCCGCCAGCTCACCCCACGGGCCTCGCAAGTGG
CCCGGCTCCGCCAGTTCCGCTGGAACTTGGACGTGGCCTCCCCGGTGGTGCTTCGCTACGTGCTC
GGGTTCCACCGGGCCACCCTCGACGACCTCTCGGAGGCGGTGCGCCTCTACAACGACACCGGGAC
CACCCCGACCACCACCAACCAGAAGACGTTGGTGGTGTGTGGGGC
Found at i:7637 original size:18 final size:18
Alignment explanation
Indices: 7610--7647 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
7600 TCTGCCAGCC
* *
7610 TCTCAGACCGTTTCTCCT
1 TCTCAAACCGTCTCTCCT
7628 TCTCAAACCGTCTCTCCT
1 TCTCAAACCGTCTCTCCT
7646 TC
1 TC
7648 CCGTTCTCCC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.13, C:0.42, G:0.08, T:0.37
Consensus pattern (18 bp):
TCTCAAACCGTCTCTCCT
Left flanking sequence: Indices 7110 -- 7609
TGCCCGGGTTTGGCAATCTGAGACGGGCCCGGGGGAAGCTGATTGTCGAGATGAGCGACGAGGAG
CAGGCCCGGGTGGACGCCAGCTGGCGGGCCATGGCGTGGAGCGACTTTGAGACCGACAATTTGGT
GGAGCTCTTGCGGCGGTGGCTCGGCCAGGTGGCCCCGGGGCGGAAGGTGGTGCTTGTGGGGCACC
TGATGGGCACCCACTTGGTGGTGAAGCTTGCGCGGGTGCTTGAGGCGGGCTCGGTGGAGGGGATG
GTGTTGTTGTCGCCTCCCGGGTTGGGAAGGGGAGAGTCTGGAGGCCGTGTTTTGGCCCTGGACGC
TCGTGGTGTGGCCCTGGACGCCCGTGGTGTGGCCAGTGGCTCCACCGTGCTGGGCACCTCTGACC
CTCTCAACTTGGAGGAACCCTCCTCCGGGAAGGAAGCCACCGGGACCACCACGGGCCGGGCTGGT
GGCCAAGCCACAGACTCAACAGACAAGAAAAACACTCTGCCAGCC
Right flanking sequence: Indices 7648 -- 8147
CCGTTCTCCCCCCGTCGTTCCCCCCCTGCTCCGCTTCTTTGCCCGTTTTCCCCGCCTCTTCGACC
TCTTCCGGGTCTGGGACCGCCTCCGCGGGCTCGACTCCCACCTGGTGACCCGCCAGCTCACCCCA
CGGGCCTCGCAAGTGGCCCGGCTCCGCCAGTTCCGCTGGAACTTGGACGTGGCCTCCCCGGTGGT
GCTTCGCTACGTGCTCGGGTTCCACCGGGCCACCCTCGACGACCTCTCGGAGGCGGTGCGCCTCT
ACAACGACACCGGGACCACCCCGACCACCACCAACCAGAAGACGTTGGTGGTGTGTGGGGCCGAC
GACGCGGTGACCCCGCCCAAACACGCCCGGGCCATGGTGGACGAGCTCAACTCGCGGTGCCAGCG
GCTGGTGTCGAGCTATCTCGAGGTGCCCGAGGCCGGCCACCAGCTCCTCTTGTCGCGGCCCGAGT
GGGTGTGTGGGCAGATCCTCCAGCACATCGAGCACCAGTACCCCG
Found at i:8946 original size:13 final size:13
Alignment explanation
Indices: 8928--8957 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
8918 GGATTGGTGG
*
8928 TGGTTATTTTTGT
1 TGGTTATTTTCGT
8941 TGGTTATTTTCGT
1 TGGTTATTTTCGT
8954 TGGT
1 TGGT
8958 GTTCAATTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.07, C:0.03, G:0.27, T:0.63
Consensus pattern (13 bp):
TGGTTATTTTCGT
Left flanking sequence: Indices 8428 -- 8927
CTCCAGCGACGTGCCCGTGTACCAGCCCAGCCTGTTTGACCGGGTGCAGTACTTCAAGTGCCCCA
CGGTGCTGAAGGTGGTGCCCGACACCGGGGCGATCCGCCGGTTCATCGCCTGTGTCGACAAGGTG
CTCGAGGAGACCACGGTGGACCAGCCGATGATTGGCGTGCACTGCCACTACGGGCAGAACCGGAC
GATTTTCTGCTGCTGTGCTTATTTGGTGGAGCGGATGGGGTGGTCGGTGGCGGAGGCGTTGGATG
CGTTTGCCGTGGCGAAGCCTCCGGGGATCAAGCACCCGCACTTTATCGATGCGTTGTACGTGAGG
TATGAGAGCTGAAAGGATAGGAGAAGGGTGTGGTTTGAGGGTGAGGCTATGGCTGAGACGAGGCT
AGAGCGAGGCTATGGTTTTTATTGTTTTAGATGGCTGCTGAGCCAGTATTTCAGATGGCTGCTGA
GCATTTTTTTAGAGTGCTGGTGGGCCACCAGCGTTGGATTGGTGG
Right flanking sequence: Indices 8958 -- 9457
GTTCAATTTTTTTGGTGGTCATTTTTGTTGGTGTTCAATTCGTTATTAACGTTGACCACAGCTAA
CCAGCACCATTGCTTGCAACTAGCACCACCGCTGTTTTAGCACCACCGCTGCAACCAGCACGTCC
GCTGCAACCAGCCCACCACTTGCCATTGGTCCTCCATTCCGATCGCTTCAACGGCTGACTCGGAG
AATAAACCAGGATCGACTGGGGAAGCTGAACCAGAATCGACTGGGTCAATGGCGTTTTTGTATTG
TATAGACAATCTACGACTAGAATGAAGAGTGTTGCGCGCTGAGTCTAGAGTCGGAAGAGTTAAAG
GCACCGTTGGTATTATATTTGTCTTTTTCGCCATGGTGGATTCTTACTCAGATCGAAGGGTACGA
AATACGGTTATGAGTTAGATGGGAGTCTCAATAGTCGTGAGGCTCTATTTTATATAGTGTAGCAA
TATCCTGAAAAGTAGTTTGTGAACCTATTGAGGTTTACCCATAGT
Found at i:8970 original size:32 final size:32
Alignment explanation
Indices: 8934--8997 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
8924 GTGGTGGTTA
* *
8934 TTTTTGTTGGTTATTTTCGTTGGTGTTCAATT
1 TTTTTGGTGGTCATTTTCGTTGGTGTTCAATT
*
8966 TTTTTGGTGGTCATTTTTGTTGGTGTTCAATT
1 TTTTTGGTGGTCATTTTCGTTGGTGTTCAATT
8998 CGTTATTAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.09, C:0.06, G:0.23, T:0.61
Consensus pattern (32 bp):
TTTTTGGTGGTCATTTTCGTTGGTGTTCAATT
Left flanking sequence: Indices 8434 -- 8933
CGACGTGCCCGTGTACCAGCCCAGCCTGTTTGACCGGGTGCAGTACTTCAAGTGCCCCACGGTGC
TGAAGGTGGTGCCCGACACCGGGGCGATCCGCCGGTTCATCGCCTGTGTCGACAAGGTGCTCGAG
GAGACCACGGTGGACCAGCCGATGATTGGCGTGCACTGCCACTACGGGCAGAACCGGACGATTTT
CTGCTGCTGTGCTTATTTGGTGGAGCGGATGGGGTGGTCGGTGGCGGAGGCGTTGGATGCGTTTG
CCGTGGCGAAGCCTCCGGGGATCAAGCACCCGCACTTTATCGATGCGTTGTACGTGAGGTATGAG
AGCTGAAAGGATAGGAGAAGGGTGTGGTTTGAGGGTGAGGCTATGGCTGAGACGAGGCTAGAGCG
AGGCTATGGTTTTTATTGTTTTAGATGGCTGCTGAGCCAGTATTTCAGATGGCTGCTGAGCATTT
TTTTAGAGTGCTGGTGGGCCACCAGCGTTGGATTGGTGGTGGTTA
Right flanking sequence: Indices 8998 -- 9497
CGTTATTAACGTTGACCACAGCTAACCAGCACCATTGCTTGCAACTAGCACCACCGCTGTTTTAG
CACCACCGCTGCAACCAGCACGTCCGCTGCAACCAGCCCACCACTTGCCATTGGTCCTCCATTCC
GATCGCTTCAACGGCTGACTCGGAGAATAAACCAGGATCGACTGGGGAAGCTGAACCAGAATCGA
CTGGGTCAATGGCGTTTTTGTATTGTATAGACAATCTACGACTAGAATGAAGAGTGTTGCGCGCT
GAGTCTAGAGTCGGAAGAGTTAAAGGCACCGTTGGTATTATATTTGTCTTTTTCGCCATGGTGGA
TTCTTACTCAGATCGAAGGGTACGAAATACGGTTATGAGTTAGATGGGAGTCTCAATAGTCGTGA
GGCTCTATTTTATATAGTGTAGCAATATCCTGAAAAGTAGTTTGTGAACCTATTGAGGTTTACCC
ATAGTTACATGGCTTTAGATGGCTACCGTGTTAGGTAAGATACAT
Found at i:8974 original size:16 final size:17
Alignment explanation
Indices: 8946--8997 Score: 72
Period size: 16 Copynumber: 3.2 Consensus size: 17
8936 TTTGTTGGTT
*
8946 ATTTTCGTTGGTGTTCA
1 ATTTTTGTTGGTGTTCA
*
8963 ATTTTT-TTGGTGGTC-
1 ATTTTTGTTGGTGTTCA
8978 ATTTTTGTTGGTGTTCA
1 ATTTTTGTTGGTGTTCA
8995 ATT
1 ATT
8998 CGTTATTAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
15 6 0.20
16 16 0.53
17 8 0.27
ACGTcount: A:0.12, C:0.08, G:0.23, T:0.58
Consensus pattern (17 bp):
ATTTTTGTTGGTGTTCA
Left flanking sequence: Indices 8446 -- 8945
GTACCAGCCCAGCCTGTTTGACCGGGTGCAGTACTTCAAGTGCCCCACGGTGCTGAAGGTGGTGC
CCGACACCGGGGCGATCCGCCGGTTCATCGCCTGTGTCGACAAGGTGCTCGAGGAGACCACGGTG
GACCAGCCGATGATTGGCGTGCACTGCCACTACGGGCAGAACCGGACGATTTTCTGCTGCTGTGC
TTATTTGGTGGAGCGGATGGGGTGGTCGGTGGCGGAGGCGTTGGATGCGTTTGCCGTGGCGAAGC
CTCCGGGGATCAAGCACCCGCACTTTATCGATGCGTTGTACGTGAGGTATGAGAGCTGAAAGGAT
AGGAGAAGGGTGTGGTTTGAGGGTGAGGCTATGGCTGAGACGAGGCTAGAGCGAGGCTATGGTTT
TTATTGTTTTAGATGGCTGCTGAGCCAGTATTTCAGATGGCTGCTGAGCATTTTTTTAGAGTGCT
GGTGGGCCACCAGCGTTGGATTGGTGGTGGTTATTTTTGTTGGTT
Right flanking sequence: Indices 8998 -- 9497
CGTTATTAACGTTGACCACAGCTAACCAGCACCATTGCTTGCAACTAGCACCACCGCTGTTTTAG
CACCACCGCTGCAACCAGCACGTCCGCTGCAACCAGCCCACCACTTGCCATTGGTCCTCCATTCC
GATCGCTTCAACGGCTGACTCGGAGAATAAACCAGGATCGACTGGGGAAGCTGAACCAGAATCGA
CTGGGTCAATGGCGTTTTTGTATTGTATAGACAATCTACGACTAGAATGAAGAGTGTTGCGCGCT
GAGTCTAGAGTCGGAAGAGTTAAAGGCACCGTTGGTATTATATTTGTCTTTTTCGCCATGGTGGA
TTCTTACTCAGATCGAAGGGTACGAAATACGGTTATGAGTTAGATGGGAGTCTCAATAGTCGTGA
GGCTCTATTTTATATAGTGTAGCAATATCCTGAAAAGTAGTTTGTGAACCTATTGAGGTTTACCC
ATAGTTACATGGCTTTAGATGGCTACCGTGTTAGGTAAGATACAT
Found at i:10565 original size:14 final size:14
Alignment explanation
Indices: 10546--10587 Score: 75
Period size: 14 Copynumber: 3.0 Consensus size: 14
10536 CTGACAGGTG
10546 GCTGACCCTGTGCC
1 GCTGACCCTGTGCC
10560 GCTGACCCTGTGCC
1 GCTGACCCTGTGCC
*
10574 GCTGACCCCGTGCC
1 GCTGACCCTGTGCC
10588 AAGCGTTTTG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.07, C:0.45, G:0.29, T:0.19
Consensus pattern (14 bp):
GCTGACCCTGTGCC
Left flanking sequence: Indices 10046 -- 10545
CCTCCACAATGGCCTGAGATTGCCACGTACACCGTGATGACGCTGCTACCACGCTGAAAAGAATT
TCGGGAAAACAGGGCCCTGGGGAACCTCTGTCAGTTTTGGTTAAAGTCACGTGATATGGATCACA
TGACACTAACAAATAGGGTAACCAACCACAGGGCGATAGCTAGAAGAGGACAAACTAAAGTGAAT
GCTGTTGTAGCTTTAACTGCTTCTGTTTATTCTCGTCGTTTTGTTCTTTTATTTGTACGAGCCGT
TTAGCGTCTCTGAAATTACACTTGTTCATCCCATGGCCTCCAGTTGCACCACGTCATCACCATGA
CACCCACACGCTGTGACACATGGCTCAGCCGTGTACGCCCTTCTTTCCTCCCTTTCCCTTTCCGG
CTAATGATCGACTAATGGCTAGACTGTGCTTCATGCCCGCACTACTCCGGGCCCATCCGAGAAAA
TATCCAACAGCTGTCTGGGACGTTAACGGGGATGGCTGACAGGTG
Right flanking sequence: Indices 10588 -- 11087
AAGCGTTTTGGTTTCTCAGCCCGCTGACGGGGCTGTTTCGTCCGGGAATGGCCGTGTTCTGGAAT
GGTAGAAAATGTAAAATGTACGGGCTTAGAAAAGCCAAACACCATCAGAGCGAGCCGGTAACCAC
ACGGTCAATACACTATTTTCCCTTTCCCATTCTCTTCATTGGTGTATAATGCCCCTAAGGCTCTA
GCCCACCGATCAGTTTTGCCCACCTAATACCACCCTTCTTCCCAACTTCCCTACTTCTCCCCCTT
CGGAACAACTCCACGTCACCTTCCTCGCCAAGGTCATCGCTAATCGTAAGATTTTCACTGCAAGC
ACGGCCATCGTCTACGGCCTAAATATGGAAACCAGCACCACCACCAGCTCCACCGAGCCTACCCA
CTCCTACCACCTCCACTACACCACACCTCTACACCCCTCCTTCTCCCCTCCCCACCTCCCCACGC
CCAACCGGGTCTCGATGCTCGCTAATCGCGGGCCACCCGTCGCGT
Found at i:12271 original size:15 final size:15
Alignment explanation
Indices: 12253--12283 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
12243 ACCTCCGACC
*
12253 CCGGTGCCTCCAGCG
1 CCGGTGCCCCCAGCG
12268 CCGGTGCCCCCAGCG
1 CCGGTGCCCCCAGCG
12283 C
1 C
12284 TGACGCCAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.06, C:0.52, G:0.32, T:0.10
Consensus pattern (15 bp):
CCGGTGCCCCCAGCG
Left flanking sequence: Indices 11753 -- 12252
GCTTGCCCCCGCGCCCCCGGCGGCCCCGCCCCTGGCCGCGGCCCCGGCGCGGTTTGAGCTGGACT
TGGACTACCTCCTCGGCACCTCGCACGAGTGCAGTGTGCCCGCACCTCTGGCGCCAGAGGTGCCG
CCGGCGGCGCGCCGGGTGCGCAAGACGAAGCTGCTCCGGTTCCTGCCGCTGGAGATCGCCCAGGA
CATCGACGACATCGACTTGGACGCCGAGCTGCCGCCGCCCACCCAGCGGGCGTCGCCCAAGAAAC
GCGGCGGCCGCCGCAAGAAGCTGATGGAGGTGATGGCGGCGTTTGCCGCCAACGACTTGCTGAAG
GACGACTCGTTGGCCGACATGTCGTTTATCAGCGACGACGAGCACCTGACGCTGATGGAGGTGTC
GTTCCACGACGACGCGGGCGAGGCCACCGGCCAGGCCACCAACGGCCAGGCTGTCAACGGCGCCC
CGACCAACGGCACCGCCTCCTCGCACACCTCTCACACCTCCGACC
Right flanking sequence: Indices 12284 -- 12783
TGACGCCAGTGCCCCCAACGCCGACACCGGTAGTGCACCTGGTGCCGGCGATTCCTCCTCCTCCT
CCGGCGCCAACCCCACCGAGGGCGCCAACCCCGACCAGGGCTCCCACTCCGCCGGCGCCAACCCC
ACCCTGGGCCCCAACACCGACCAGGGCGCCAACCAGGGCACCACCCCGGGCACCAACCCCACCCC
AGAGTCCCGGCTCTCCAAAAAGAAGAGCCGGAGCCAGTTGCGCAAGAAGCGGCTGCGGGCCAAGT
TGCGCGAGGCCAAGGAGGCCGCCGCCGCCGCCGCGGCCGAAGAAGAGCCCAAGGGCCTCGGGCTC
ACCCTGGTCAGCGCCGAGGCGCTCCCCCCGACCCCGTCGATCGCCGAGTTGGCGCGCAAGCCCCT
GGTGGCGGCGTTGATCGCCGGGATCGAGCGCGGGGAGCAGGAGCTGCCGTTTGCGGTGCAGTTGC
GCCCGTTGAACATCAACAACACCAAGAAGCTGGAGAAGTTGCCCG
Found at i:12290 original size:21 final size:21
Alignment explanation
Indices: 12266--12314 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
12256 GTGCCTCCAG
* *
12266 CGCCGGTGCCCCCAGCGCTGA
1 CGCCGGTGCCCCCAACGCCGA
*
12287 CGCCAGTGCCCCCAACGCCGA
1 CGCCGGTGCCCCCAACGCCGA
*
12308 CACCGGT
1 CGCCGGT
12315 AGTGCACCTG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.14, C:0.49, G:0.29, T:0.08
Consensus pattern (21 bp):
CGCCGGTGCCCCCAACGCCGA
Left flanking sequence: Indices 11766 -- 12265
CCCCCGGCGGCCCCGCCCCTGGCCGCGGCCCCGGCGCGGTTTGAGCTGGACTTGGACTACCTCCT
CGGCACCTCGCACGAGTGCAGTGTGCCCGCACCTCTGGCGCCAGAGGTGCCGCCGGCGGCGCGCC
GGGTGCGCAAGACGAAGCTGCTCCGGTTCCTGCCGCTGGAGATCGCCCAGGACATCGACGACATC
GACTTGGACGCCGAGCTGCCGCCGCCCACCCAGCGGGCGTCGCCCAAGAAACGCGGCGGCCGCCG
CAAGAAGCTGATGGAGGTGATGGCGGCGTTTGCCGCCAACGACTTGCTGAAGGACGACTCGTTGG
CCGACATGTCGTTTATCAGCGACGACGAGCACCTGACGCTGATGGAGGTGTCGTTCCACGACGAC
GCGGGCGAGGCCACCGGCCAGGCCACCAACGGCCAGGCTGTCAACGGCGCCCCGACCAACGGCAC
CGCCTCCTCGCACACCTCTCACACCTCCGACCCCGGTGCCTCCAG
Right flanking sequence: Indices 12315 -- 12814
AGTGCACCTGGTGCCGGCGATTCCTCCTCCTCCTCCGGCGCCAACCCCACCGAGGGCGCCAACCC
CGACCAGGGCTCCCACTCCGCCGGCGCCAACCCCACCCTGGGCCCCAACACCGACCAGGGCGCCA
ACCAGGGCACCACCCCGGGCACCAACCCCACCCCAGAGTCCCGGCTCTCCAAAAAGAAGAGCCGG
AGCCAGTTGCGCAAGAAGCGGCTGCGGGCCAAGTTGCGCGAGGCCAAGGAGGCCGCCGCCGCCGC
CGCGGCCGAAGAAGAGCCCAAGGGCCTCGGGCTCACCCTGGTCAGCGCCGAGGCGCTCCCCCCGA
CCCCGTCGATCGCCGAGTTGGCGCGCAAGCCCCTGGTGGCGGCGTTGATCGCCGGGATCGAGCGC
GGGGAGCAGGAGCTGCCGTTTGCGGTGCAGTTGCGCCCGTTGAACATCAACAACACCAAGAAGCT
GGAGAAGTTGCCCGAGGTGCAGCCGCTCAAGCTGATCATCGGGTT
Found at i:12374 original size:18 final size:17
Alignment explanation
Indices: 12351--12447 Score: 81
Period size: 18 Copynumber: 5.6 Consensus size: 17
12341 CTCCTCCTCC
12351 GGCGCCAACCCCACCGAG
1 GGCGCCAACCCCACC-AG
12369 GGCGCCAACCCCGACCAG
1 GGCGCCAACCCC-ACCAG
* * * *
12387 GGCTCCCACTCCGCC--
1 GGCGCCAACCCCACCAG
*
12402 GGCGCCAACCCCACCCTG
1 GGCGCCAACCCCA-CCAG
* *
12420 GGCCCCAACACCGACCAG
1 GGCGCCAAC-CCCACCAG
12438 GGCGCCAACC
1 GGCGCCAACC
12448 AGGGCACCAC
Statistics
Matches: 62, Mismatches: 12, Indels: 11
0.73 0.14 0.13
Matches are distributed among these distances:
15 9 0.15
16 2 0.03
17 3 0.05
18 42 0.68
19 6 0.10
ACGTcount: A:0.20, C:0.53, G:0.25, T:0.03
Consensus pattern (17 bp):
GGCGCCAACCCCACCAG
Left flanking sequence: Indices 11851 -- 12350
GTGTGCCCGCACCTCTGGCGCCAGAGGTGCCGCCGGCGGCGCGCCGGGTGCGCAAGACGAAGCTG
CTCCGGTTCCTGCCGCTGGAGATCGCCCAGGACATCGACGACATCGACTTGGACGCCGAGCTGCC
GCCGCCCACCCAGCGGGCGTCGCCCAAGAAACGCGGCGGCCGCCGCAAGAAGCTGATGGAGGTGA
TGGCGGCGTTTGCCGCCAACGACTTGCTGAAGGACGACTCGTTGGCCGACATGTCGTTTATCAGC
GACGACGAGCACCTGACGCTGATGGAGGTGTCGTTCCACGACGACGCGGGCGAGGCCACCGGCCA
GGCCACCAACGGCCAGGCTGTCAACGGCGCCCCGACCAACGGCACCGCCTCCTCGCACACCTCTC
ACACCTCCGACCCCGGTGCCTCCAGCGCCGGTGCCCCCAGCGCTGACGCCAGTGCCCCCAACGCC
GACACCGGTAGTGCACCTGGTGCCGGCGATTCCTCCTCCTCCTCC
Right flanking sequence: Indices 12448 -- 12947
AGGGCACCACCCCGGGCACCAACCCCACCCCAGAGTCCCGGCTCTCCAAAAAGAAGAGCCGGAGC
CAGTTGCGCAAGAAGCGGCTGCGGGCCAAGTTGCGCGAGGCCAAGGAGGCCGCCGCCGCCGCCGC
GGCCGAAGAAGAGCCCAAGGGCCTCGGGCTCACCCTGGTCAGCGCCGAGGCGCTCCCCCCGACCC
CGTCGATCGCCGAGTTGGCGCGCAAGCCCCTGGTGGCGGCGTTGATCGCCGGGATCGAGCGCGGG
GAGCAGGAGCTGCCGTTTGCGGTGCAGTTGCGCCCGTTGAACATCAACAACACCAAGAAGCTGGA
GAAGTTGCCCGAGGTGCAGCCGCTCAAGCTGATCATCGGGTTGCTGCTGCTCCACATCCTCAAGT
TGAACCTGAACGACGTCAAGATGAAGACGCTCAAGCAGCTGCTGACGCTCCTGAAGTACGCGGCC
ACCGGGCTCTCGTTCACCAACACCCACTCCGACGAGCTCTTTGCC
Found at i:12409 original size:51 final size:51
Alignment explanation
Indices: 12344--12440 Score: 149
Period size: 51 Copynumber: 1.9 Consensus size: 51
12334 ATTCCTCCTC
* * * *
12344 CTCCTCCGGCGCCAACCCCACCGAGGGCGCCAACCCCGACCAGGGCTCCCA
1 CTCCGCCGGCGCCAACCCCACCCAGGGCCCCAACACCGACCAGGGCTCCCA
*
12395 CTCCGCCGGCGCCAACCCCACCCTGGGCCCCAACACCGACCAGGGC
1 CTCCGCCGGCGCCAACCCCACCCAGGGCCCCAACACCGACCAGGGC
12441 GCCAACCAGG
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
51 41 1.00
ACGTcount: A:0.18, C:0.54, G:0.24, T:0.05
Consensus pattern (51 bp):
CTCCGCCGGCGCCAACCCCACCCAGGGCCCCAACACCGACCAGGGCTCCCA
Left flanking sequence: Indices 11844 -- 12343
GAGTGCAGTGTGCCCGCACCTCTGGCGCCAGAGGTGCCGCCGGCGGCGCGCCGGGTGCGCAAGAC
GAAGCTGCTCCGGTTCCTGCCGCTGGAGATCGCCCAGGACATCGACGACATCGACTTGGACGCCG
AGCTGCCGCCGCCCACCCAGCGGGCGTCGCCCAAGAAACGCGGCGGCCGCCGCAAGAAGCTGATG
GAGGTGATGGCGGCGTTTGCCGCCAACGACTTGCTGAAGGACGACTCGTTGGCCGACATGTCGTT
TATCAGCGACGACGAGCACCTGACGCTGATGGAGGTGTCGTTCCACGACGACGCGGGCGAGGCCA
CCGGCCAGGCCACCAACGGCCAGGCTGTCAACGGCGCCCCGACCAACGGCACCGCCTCCTCGCAC
ACCTCTCACACCTCCGACCCCGGTGCCTCCAGCGCCGGTGCCCCCAGCGCTGACGCCAGTGCCCC
CAACGCCGACACCGGTAGTGCACCTGGTGCCGGCGATTCCTCCTC
Right flanking sequence: Indices 12441 -- 12940
GCCAACCAGGGCACCACCCCGGGCACCAACCCCACCCCAGAGTCCCGGCTCTCCAAAAAGAAGAG
CCGGAGCCAGTTGCGCAAGAAGCGGCTGCGGGCCAAGTTGCGCGAGGCCAAGGAGGCCGCCGCCG
CCGCCGCGGCCGAAGAAGAGCCCAAGGGCCTCGGGCTCACCCTGGTCAGCGCCGAGGCGCTCCCC
CCGACCCCGTCGATCGCCGAGTTGGCGCGCAAGCCCCTGGTGGCGGCGTTGATCGCCGGGATCGA
GCGCGGGGAGCAGGAGCTGCCGTTTGCGGTGCAGTTGCGCCCGTTGAACATCAACAACACCAAGA
AGCTGGAGAAGTTGCCCGAGGTGCAGCCGCTCAAGCTGATCATCGGGTTGCTGCTGCTCCACATC
CTCAAGTTGAACCTGAACGACGTCAAGATGAAGACGCTCAAGCAGCTGCTGACGCTCCTGAAGTA
CGCGGCCACCGGGCTCTCGTTCACCAACACCCACTCCGACGAGCT
Found at i:12450 original size:12 final size:12
Alignment explanation
Indices: 12428--12471 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
12418 TGGGCCCCAA
*
12428 CACCGACCAGGG
1 CACCAACCAGGG
*
12440 CGCCAACCAGGG
1 CACCAACCAGGG
* *
12452 CACCACCCCGGG
1 CACCAACCAGGG
12464 CACCAACC
1 CACCAACC
12472 CCACCCCAGA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.25, C:0.50, G:0.25, T:0.00
Consensus pattern (12 bp):
CACCAACCAGGG
Left flanking sequence: Indices 11928 -- 12427
CCGCTGGAGATCGCCCAGGACATCGACGACATCGACTTGGACGCCGAGCTGCCGCCGCCCACCCA
GCGGGCGTCGCCCAAGAAACGCGGCGGCCGCCGCAAGAAGCTGATGGAGGTGATGGCGGCGTTTG
CCGCCAACGACTTGCTGAAGGACGACTCGTTGGCCGACATGTCGTTTATCAGCGACGACGAGCAC
CTGACGCTGATGGAGGTGTCGTTCCACGACGACGCGGGCGAGGCCACCGGCCAGGCCACCAACGG
CCAGGCTGTCAACGGCGCCCCGACCAACGGCACCGCCTCCTCGCACACCTCTCACACCTCCGACC
CCGGTGCCTCCAGCGCCGGTGCCCCCAGCGCTGACGCCAGTGCCCCCAACGCCGACACCGGTAGT
GCACCTGGTGCCGGCGATTCCTCCTCCTCCTCCGGCGCCAACCCCACCGAGGGCGCCAACCCCGA
CCAGGGCTCCCACTCCGCCGGCGCCAACCCCACCCTGGGCCCCAA
Right flanking sequence: Indices 12472 -- 12971
CCACCCCAGAGTCCCGGCTCTCCAAAAAGAAGAGCCGGAGCCAGTTGCGCAAGAAGCGGCTGCGG
GCCAAGTTGCGCGAGGCCAAGGAGGCCGCCGCCGCCGCCGCGGCCGAAGAAGAGCCCAAGGGCCT
CGGGCTCACCCTGGTCAGCGCCGAGGCGCTCCCCCCGACCCCGTCGATCGCCGAGTTGGCGCGCA
AGCCCCTGGTGGCGGCGTTGATCGCCGGGATCGAGCGCGGGGAGCAGGAGCTGCCGTTTGCGGTG
CAGTTGCGCCCGTTGAACATCAACAACACCAAGAAGCTGGAGAAGTTGCCCGAGGTGCAGCCGCT
CAAGCTGATCATCGGGTTGCTGCTGCTCCACATCCTCAAGTTGAACCTGAACGACGTCAAGATGA
AGACGCTCAAGCAGCTGCTGACGCTCCTGAAGTACGCGGCCACCGGGCTCTCGTTCACCAACACC
CACTCCGACGAGCTCTTTGCCAACCCCGACAAACAGCGGGTGTTC
Found at i:13457 original size:10 final size:10
Alignment explanation
Indices: 13442--13497 Score: 68
Period size: 10 Copynumber: 6.1 Consensus size: 10
13432 AATAGTGGGG
*
13442 ATTTGCAGCC
1 ATTTGCAACC
13452 ATTTGCAACC
1 ATTTGCAACC
13462 A--TGCAA-C
1 ATTTGCAACC
13469 A--TGCAACC
1 ATTTGCAACC
13477 ATTTGCAACC
1 ATTTGCAACC
13487 ATTTGCAACC
1 ATTTGCAACC
13497 A
1 A
13498 CTCGTATATT
Statistics
Matches: 42, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
7 7 0.17
8 7 0.17
10 28 0.67
ACGTcount: A:0.32, C:0.30, G:0.12, T:0.25
Consensus pattern (10 bp):
ATTTGCAACC
Left flanking sequence: Indices 12942 -- 13441
TTTGCCAACCCCGACAAACAGCGGGTGTTCTTTTTGTTGTGCATCAACGTGGCGCTCTTTGAGGC
GGTGGGGTTCAAAAAGACGCTCCAGGCGCACCCCGACATCTTGGAGTTGTTTGGCGGGTATCCCG
AGATCAACTTGGAGACCACCCGCACCAAGTTGACCCCGCTGAACAAGCAGGTGCACCAGAACAAC
TTGGACTACCTGGTGCTTTCCTATTTGGGCAACATTTTGATCTGGGCCGCCAACATGCAGCGCGA
GGCGGGCAAGCCGTTGTTGTACCAGCACTACGACCTTGGGTTTGACTGCCAGGTGGTGCGGGACA
ACGTGGGCGGGTGGCATTTGTGGGACCGGTTGCACCGCGAGCGCAAGCACATGAGTCTGAAGCGG
TGGAAGCATGTGATCAAGTTCCGCACCGCGTTCCCGTTTGAGGTGGACCAGTTTGTGTTGATGTT
GCGGTACATGAAGGCCGACGTGCTGAACTTGTTGGAATAGTGGGG
Right flanking sequence: Indices 13498 -- 13997
CTCGTATATTTGGAAAAATACGTCAATAGTGCATAGGCGAGGGAGTGGATATGGAGGGCCATGGA
GAGGTAAATAGTCACCGTGCGTCTGTGTGCGGCCTGTGTGCGGCCTGTGTGCGTCCGGTGTGCGC
TCACTGGGTCAGTTGGGTGCGTATTGGGTTAGTTAGGCGCAGTTTTGCGCAAACTTGCGAGCATA
AAATTAGAGCTGAGAAAATACATATTCATTAGGATGGGTGTATGAGGGGGGTAGGAGTGGGGGTG
GTTGGTGGAAGGGTTGGTAATAGTGGGTGGTAGGGTGTAATGGTTGGGTGGTAGGGTGTAATGAG
TGGGTGTGGTGGTCCGCACGATAGCCGCGACGAGATTGGTTGGCTGAATGGGACTAAGAAGGCTA
TAGTCAGTGGTGTTTTAAAACAATAGAGTTAAAAAATAGCGCAGAAACCACAACACAGAGTTGAG
TGGTAGGCTCCAAAGGGGTTCCCTGTGTGCTCTTCAGGTTATTTA
Found at i:13613 original size:13 final size:11
Alignment explanation
Indices: 13585--13626 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
13575 CACCGTGCGT
13585 CTGTGTGCGGC
1 CTGTGTGCGGC
13596 CTGTGTGCGGC
1 CTGTGTGCGGC
*
13607 CTGTGTGCGTC
1 CTGTGTGCGGC
*
13618 CGGTGTGCG
1 CTGTGTGCG
13627 CTCACTGGGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.00, C:0.26, G:0.45, T:0.29
Consensus pattern (11 bp):
CTGTGTGCGGC
Left flanking sequence: Indices 13085 -- 13584
GACCACCCGCACCAAGTTGACCCCGCTGAACAAGCAGGTGCACCAGAACAACTTGGACTACCTGG
TGCTTTCCTATTTGGGCAACATTTTGATCTGGGCCGCCAACATGCAGCGCGAGGCGGGCAAGCCG
TTGTTGTACCAGCACTACGACCTTGGGTTTGACTGCCAGGTGGTGCGGGACAACGTGGGCGGGTG
GCATTTGTGGGACCGGTTGCACCGCGAGCGCAAGCACATGAGTCTGAAGCGGTGGAAGCATGTGA
TCAAGTTCCGCACCGCGTTCCCGTTTGAGGTGGACCAGTTTGTGTTGATGTTGCGGTACATGAAG
GCCGACGTGCTGAACTTGTTGGAATAGTGGGGATTTGCAGCCATTTGCAACCATGCAACATGCAA
CCATTTGCAACCATTTGCAACCACTCGTATATTTGGAAAAATACGTCAATAGTGCATAGGCGAGG
GAGTGGATATGGAGGGCCATGGAGAGGTAAATAGTCACCGTGCGT
Right flanking sequence: Indices 13627 -- 14126
CTCACTGGGTCAGTTGGGTGCGTATTGGGTTAGTTAGGCGCAGTTTTGCGCAAACTTGCGAGCAT
AAAATTAGAGCTGAGAAAATACATATTCATTAGGATGGGTGTATGAGGGGGGTAGGAGTGGGGGT
GGTTGGTGGAAGGGTTGGTAATAGTGGGTGGTAGGGTGTAATGGTTGGGTGGTAGGGTGTAATGA
GTGGGTGTGGTGGTCCGCACGATAGCCGCGACGAGATTGGTTGGCTGAATGGGACTAAGAAGGCT
ATAGTCAGTGGTGTTTTAAAACAATAGAGTTAAAAAATAGCGCAGAAACCACAACACAGAGTTGA
GTGGTAGGCTCCAAAGGGGTTCCCTGTGTGCTCTTCAGGTTATTTATAGTGCTCTTTGGGTCATA
TGTGGTGTTCTTCGAGCATGGGTTGCTGATGGGGGTATGTGTGTTTAAGTTTGGCGGTGTAGCGG
TGGGATGGTTACAGTACGGGTCAATTGCAAGTCTAACCTAGCTAG
Found at i:13807 original size:21 final size:20
Alignment explanation
Indices: 13774--13828 Score: 83
Period size: 21 Copynumber: 2.6 Consensus size: 20
13764 GGAAGGGTTG
*
13774 GTAATAGTGGGTGGTAGGGT
1 GTAATGGTGGGTGGTAGGGT
13794 GTAATGGTTGGGTGGTAGGGT
1 GTAATGG-TGGGTGGTAGGGT
13815 GTAATGAGTGGGTG
1 GTAATG-GTGGGTG
13829 TGGTGGTCCG
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
20 6 0.19
21 25 0.78
22 1 0.03
ACGTcount: A:0.18, C:0.00, G:0.51, T:0.31
Consensus pattern (20 bp):
GTAATGGTGGGTGGTAGGGT
Left flanking sequence: Indices 13274 -- 13773
CGGGTGGCATTTGTGGGACCGGTTGCACCGCGAGCGCAAGCACATGAGTCTGAAGCGGTGGAAGC
ATGTGATCAAGTTCCGCACCGCGTTCCCGTTTGAGGTGGACCAGTTTGTGTTGATGTTGCGGTAC
ATGAAGGCCGACGTGCTGAACTTGTTGGAATAGTGGGGATTTGCAGCCATTTGCAACCATGCAAC
ATGCAACCATTTGCAACCATTTGCAACCACTCGTATATTTGGAAAAATACGTCAATAGTGCATAG
GCGAGGGAGTGGATATGGAGGGCCATGGAGAGGTAAATAGTCACCGTGCGTCTGTGTGCGGCCTG
TGTGCGGCCTGTGTGCGTCCGGTGTGCGCTCACTGGGTCAGTTGGGTGCGTATTGGGTTAGTTAG
GCGCAGTTTTGCGCAAACTTGCGAGCATAAAATTAGAGCTGAGAAAATACATATTCATTAGGATG
GGTGTATGAGGGGGGTAGGAGTGGGGGTGGTTGGTGGAAGGGTTG
Right flanking sequence: Indices 13829 -- 14328
TGGTGGTCCGCACGATAGCCGCGACGAGATTGGTTGGCTGAATGGGACTAAGAAGGCTATAGTCA
GTGGTGTTTTAAAACAATAGAGTTAAAAAATAGCGCAGAAACCACAACACAGAGTTGAGTGGTAG
GCTCCAAAGGGGTTCCCTGTGTGCTCTTCAGGTTATTTATAGTGCTCTTTGGGTCATATGTGGTG
TTCTTCGAGCATGGGTTGCTGATGGGGGTATGTGTGTTTAAGTTTGGCGGTGTAGCGGTGGGATG
GTTACAGTACGGGTCAATTGCAAGTCTAACCTAGCTAGGGAAGCTAAGGGACAATACTAGAAGCA
TTATTTGGTGACAACGACTATAAGACAGCGCTTTTCCTGGTGTCATGGACGAAACTAAGCCAATG
CCCTTGTTGGTAAGCACGTCAAAAAAAACAAAAAAAAGTTTATTCAGTAGTTATACCTGTTCCAT
TGGTTAGTTTGGTATTTTCCACTTGAATGACGTGCTATTTATCGA
Found at i:15676 original size:10 final size:10
Alignment explanation
Indices: 15661--15701 Score: 82
Period size: 10 Copynumber: 4.1 Consensus size: 10
15651 CCGCGTTACG
15661 AGCTGACCTA
1 AGCTGACCTA
15671 AGCTGACCTA
1 AGCTGACCTA
15681 AGCTGACCTA
1 AGCTGACCTA
15691 AGCTGACCTA
1 AGCTGACCTA
15701 A
1 A
15702 TACATTAGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.32, C:0.29, G:0.20, T:0.20
Consensus pattern (10 bp):
AGCTGACCTA
Left flanking sequence: Indices 15161 -- 15660
GTAATTTTGATTCGGACACTACTTTTGCAAGTTCTTGGTTCACACACGAAAGACTACCCTAAACA
CAGTGTATCTGCCTCTGAACAACTCATTTAGTTTGCTTAAACGTGTGTCAACAGTATTCGACCAT
CAATGTTCGCTTATTCATTCTAGGGGACGAGAAATTCATTCCTAAACCGGCCCCCTCTCACAAAT
GATGACCACCCTTAAACGACGAGCTATACGGTGGCAGTTCAAAATTTGCTTAAGACTTTACGAGT
ATTACCTAACATGTTATGTTAGACACTTTACGAACTCTAAAATTTTCTGGTATATCATGTGATCT
GCATCACGTGATTTGCAAAACTAATATTGGTAACTTGTCATGTGAGTCAAATCACGTATTCTTTT
CCCAAGATTGTTATTAGTAAGTCATGTGACCATTTCACGTGACTTTGAGTATAGTATGTATTACA
TAATATTCACTGTTAGAGTTACGAGTATTACATAACCGCGTTACG
Right flanking sequence: Indices 15702 -- 16201
TACATTAGTGCGGCTCAAAGCATGTGATATTCATCACGTGACTTTACTGTTAGTACCGTAGATAG
CGTTGATTATGGCGAACCTGTATATATCCTATATATTACAATAAGCCCTAAATACGGCTTCAGGG
TAGCCCGCTCATGCAGGCTACCCCGAAGGCGCACCCAGTGCTTAACTATACAATTATAGAAACCC
GGATTGGATACCAATGGCACCACCAACAGGGGGAAAAAACGGTGCCAATAGCACCCGATCCAACG
AATCGAATCGAGTACCACTGACACCACCAACAGGGGGAAAAGGAGCCATTGGCATCCAACCCTAA
CAACAGCAGCAACAACAACCACACCAACACCAACAACAACACCAACACCAACACACCAACACCAC
CAACACCAATGAAAAGGGGGTGGCACCACTAGTACTTCAAATATCGTCTCTCATATGGCAAAGGA
AGCGAAGCCCAGAGGCTTACAGCTCCCCGCGCCGACCACGGGATG
Found at i:16054 original size:12 final size:13
Alignment explanation
Indices: 16039--16095 Score: 66
Period size: 12 Copynumber: 4.5 Consensus size: 13
16029 ACAGCAGCAA
16039 CAACAACC-ACAC
1 CAACAACCAACAC
*
16051 CAAC-ACCAACAA
1 CAACAACCAACAC
16063 CAAC-ACCAACAC
1 CAACAACCAACAC
16075 CAACACACCAACAC
1 CAACA-ACCAACAC
*
16089 CACCAAC
1 CAACAAC
16096 ACCAATGAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
11 3 0.08
12 22 0.56
13 2 0.05
14 12 0.31
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (13 bp):
CAACAACCAACAC
Left flanking sequence: Indices 15539 -- 16038
ACGTATTCTTTTCCCAAGATTGTTATTAGTAAGTCATGTGACCATTTCACGTGACTTTGAGTATA
GTATGTATTACATAATATTCACTGTTAGAGTTACGAGTATTACATAACCGCGTTACGAGCTGACC
TAAGCTGACCTAAGCTGACCTAAGCTGACCTAATACATTAGTGCGGCTCAAAGCATGTGATATTC
ATCACGTGACTTTACTGTTAGTACCGTAGATAGCGTTGATTATGGCGAACCTGTATATATCCTAT
ATATTACAATAAGCCCTAAATACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACCCCGAAGGCGC
ACCCAGTGCTTAACTATACAATTATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGGG
GAAAAAACGGTGCCAATAGCACCCGATCCAACGAATCGAATCGAGTACCACTGACACCACCAACA
GGGGGAAAAGGAGCCATTGGCATCCAACCCTAACAACAGCAGCAA
Right flanking sequence: Indices 16096 -- 16595
ACCAATGAAAAGGGGGTGGCACCACTAGTACTTCAAATATCGTCTCTCATATGGCAAAGGAAGCG
AAGCCCAGAGGCTTACAGCTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCC
TGACGCTAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGGGTAGAAGCGTGCAACTGCAC
ATGTCAGGACTGTTCGAGGAACCCGTAGCTGGTGGGTCGCGACGCCACCAGTAACAAGCCCTGTC
ACCAGACCAACAGACGCTGAGCCATTACCATGGCGCGAAGCGCCAACGGAAAGTGACCCAGCCGA
GAGACTCCATCAGAAGTACCAACAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGAC
AAGCTTTGATTTGCCTCCTTGGGGGGATTTTTTTCCCCCATCTTCTTTGATTTTCTTTTTGCTTG
TCGCTGCCTTCCGTAGTAACGGGAAAGGAGCCGGGCTTGCAGGGT
Found at i:16056 original size:6 final size:6
Alignment explanation
Indices: 16047--16100 Score: 65
Period size: 6 Copynumber: 9.2 Consensus size: 6
16037 AACAACAACC
* * * *
16047 ACACCA ACACCA ACAACA ACACCA ACACCA ACA-CA CCAACA CCACCA
1 ACACCA ACACCA ACACCA ACACCA ACACCA ACACCA ACACCA ACACCA
16094 ACACCA A
1 ACACCA A
16101 TGAAAAGGGG
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
5 4 0.10
6 38 0.90
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (6 bp):
ACACCA
Left flanking sequence: Indices 15547 -- 16046
TTTTCCCAAGATTGTTATTAGTAAGTCATGTGACCATTTCACGTGACTTTGAGTATAGTATGTAT
TACATAATATTCACTGTTAGAGTTACGAGTATTACATAACCGCGTTACGAGCTGACCTAAGCTGA
CCTAAGCTGACCTAAGCTGACCTAATACATTAGTGCGGCTCAAAGCATGTGATATTCATCACGTG
ACTTTACTGTTAGTACCGTAGATAGCGTTGATTATGGCGAACCTGTATATATCCTATATATTACA
ATAAGCCCTAAATACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACCCCGAAGGCGCACCCAGTG
CTTAACTATACAATTATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGGGGAAAAAAC
GGTGCCAATAGCACCCGATCCAACGAATCGAATCGAGTACCACTGACACCACCAACAGGGGGAAA
AGGAGCCATTGGCATCCAACCCTAACAACAGCAGCAACAACAACC
Right flanking sequence: Indices 16101 -- 16600
TGAAAAGGGGGTGGCACCACTAGTACTTCAAATATCGTCTCTCATATGGCAAAGGAAGCGAAGCC
CAGAGGCTTACAGCTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCTGACG
CTAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGGGTAGAAGCGTGCAACTGCACATGTC
AGGACTGTTCGAGGAACCCGTAGCTGGTGGGTCGCGACGCCACCAGTAACAAGCCCTGTCACCAG
ACCAACAGACGCTGAGCCATTACCATGGCGCGAAGCGCCAACGGAAAGTGACCCAGCCGAGAGAC
TCCATCAGAAGTACCAACAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAAGCT
TTGATTTGCCTCCTTGGGGGGATTTTTTTCCCCCATCTTCTTTGATTTTCTTTTTGCTTGTCGCT
GCCTTCCGTAGTAACGGGAAAGGAGCCGGGCTTGCAGGGTGCAAG
Found at i:16062 original size:18 final size:18
Alignment explanation
Indices: 16039--16090 Score: 77
Period size: 18 Copynumber: 2.8 Consensus size: 18
16029 ACAGCAGCAA
16039 CAACAACCACACCAACAC
1 CAACAACCACACCAACAC
*
16057 CAACAACAACACCAACAC
1 CAACAACCACACCAACAC
16075 CAACACACCAACACCA
1 CAACA-ACC-ACACCA
16091 CCAACACCAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 22 0.73
19 2 0.07
20 6 0.20
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (18 bp):
CAACAACCACACCAACAC
Left flanking sequence: Indices 15539 -- 16038
ACGTATTCTTTTCCCAAGATTGTTATTAGTAAGTCATGTGACCATTTCACGTGACTTTGAGTATA
GTATGTATTACATAATATTCACTGTTAGAGTTACGAGTATTACATAACCGCGTTACGAGCTGACC
TAAGCTGACCTAAGCTGACCTAAGCTGACCTAATACATTAGTGCGGCTCAAAGCATGTGATATTC
ATCACGTGACTTTACTGTTAGTACCGTAGATAGCGTTGATTATGGCGAACCTGTATATATCCTAT
ATATTACAATAAGCCCTAAATACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACCCCGAAGGCGC
ACCCAGTGCTTAACTATACAATTATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGGG
GAAAAAACGGTGCCAATAGCACCCGATCCAACGAATCGAATCGAGTACCACTGACACCACCAACA
GGGGGAAAAGGAGCCATTGGCATCCAACCCTAACAACAGCAGCAA
Right flanking sequence: Indices 16091 -- 16590
CCAACACCAATGAAAAGGGGGTGGCACCACTAGTACTTCAAATATCGTCTCTCATATGGCAAAGG
AAGCGAAGCCCAGAGGCTTACAGCTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCC
CATCCTGACGCTAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGGGTAGAAGCGTGCAAC
TGCACATGTCAGGACTGTTCGAGGAACCCGTAGCTGGTGGGTCGCGACGCCACCAGTAACAAGCC
CTGTCACCAGACCAACAGACGCTGAGCCATTACCATGGCGCGAAGCGCCAACGGAAAGTGACCCA
GCCGAGAGACTCCATCAGAAGTACCAACAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTA
ACGACAAGCTTTGATTTGCCTCCTTGGGGGGATTTTTTTCCCCCATCTTCTTTGATTTTCTTTTT
GCTTGTCGCTGCCTTCCGTAGTAACGGGAAAGGAGCCGGGCTTGC
Found at i:16096 original size:9 final size:9
Alignment explanation
Indices: 16048--16099 Score: 58
Period size: 9 Copynumber: 6.2 Consensus size: 9
16038 ACAACAACCA
16048 CACCAACAC
1 CACCAACAC
* *
16057 CAACAACAA
1 CACCAACAC
16066 CACC-A-A-
1 CACCAACAC
16072 CACCAACA-
1 CACCAACAC
16080 CACCAACAC
1 CACCAACAC
16089 CACCAACAC
1 CACCAACAC
16098 CA
1 CA
16100 ATGAAAAGGG
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
6 4 0.11
7 2 0.05
8 10 0.27
9 21 0.57
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (9 bp):
CACCAACAC
Left flanking sequence: Indices 15548 -- 16047
TTTCCCAAGATTGTTATTAGTAAGTCATGTGACCATTTCACGTGACTTTGAGTATAGTATGTATT
ACATAATATTCACTGTTAGAGTTACGAGTATTACATAACCGCGTTACGAGCTGACCTAAGCTGAC
CTAAGCTGACCTAAGCTGACCTAATACATTAGTGCGGCTCAAAGCATGTGATATTCATCACGTGA
CTTTACTGTTAGTACCGTAGATAGCGTTGATTATGGCGAACCTGTATATATCCTATATATTACAA
TAAGCCCTAAATACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACCCCGAAGGCGCACCCAGTGC
TTAACTATACAATTATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGGGGAAAAAACG
GTGCCAATAGCACCCGATCCAACGAATCGAATCGAGTACCACTGACACCACCAACAGGGGGAAAA
GGAGCCATTGGCATCCAACCCTAACAACAGCAGCAACAACAACCA
Right flanking sequence: Indices 16100 -- 16599
ATGAAAAGGGGGTGGCACCACTAGTACTTCAAATATCGTCTCTCATATGGCAAAGGAAGCGAAGC
CCAGAGGCTTACAGCTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCTGAC
GCTAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGGGTAGAAGCGTGCAACTGCACATGT
CAGGACTGTTCGAGGAACCCGTAGCTGGTGGGTCGCGACGCCACCAGTAACAAGCCCTGTCACCA
GACCAACAGACGCTGAGCCATTACCATGGCGCGAAGCGCCAACGGAAAGTGACCCAGCCGAGAGA
CTCCATCAGAAGTACCAACAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAAGC
TTTGATTTGCCTCCTTGGGGGGATTTTTTTCCCCCATCTTCTTTGATTTTCTTTTTGCTTGTCGC
TGCCTTCCGTAGTAACGGGAAAGGAGCCGGGCTTGCAGGGTGCAA
Done.