Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold38
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 269022
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Found at i:3034 original size:10 final size:10
Alignment explanation
Indices: 3016--3045 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
3006 ATAGTCAATA
3016 AAAACACATC
1 AAAACACATC
*
3026 AAAATACATC
1 AAAACACATC
3036 AAAACACATC
1 AAAACACATC
3046 GTATTTCGGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.60, C:0.27, G:0.00, T:0.13
Consensus pattern (10 bp):
AAAACACATC
Left flanking sequence: Indices 2516 -- 3015
TTTACACATAGTTTGCGATGTGATGGAGAATTTCCGATACTGGTAAGGGATGACGATTAGCTAAT
GATCACCAGGTAGACCATTATCCTTGAATCCTATTTCGGCGACTATTAAGTTTTCCTAACTCCGT
AAATTAGTTTAATTTCAGCCAGTTCCCCACCCACTTATTGTCGCGTCCCAAAATGGTAATTCGCA
ACCACTTTGAACCAATGCACTACACGAGCATTCCCTACATTGTCAAACCTAAAATCAGTAAGTTT
ACCGAGTTTTATATCCACATGTCAGGTATAAATACGACTCTAACTCCTCGCATGTTACTCATCAT
CAATCTCATCAATCATGGCCGCTCAGAACACTCGCACTAACAAAAAGTCTGGCAAGGACGGTAAG
GACAACTACGACATCTCGGAATTTTACGCCGCTATGGTATGTGTGATTGTCTAGATACGGAGACT
TTGCCGTGCCTTGCTTCCTATCGGGGCTACTCTTTATAGTCAATA
Right flanking sequence: Indices 3046 -- 3545
GTATTTCGGTTGATATAATTACCTTGATGGATCTCAAAAACCAACATGTTGAGGTCGGGTTACTT
TGTTAACTCAGAGCGCTTGTCGAGGTAACATTCCCCTTTCCACCGTGAGGTTGAGTGCAATCTAT
GTGCTACTCACTAAACTCTCGGAACTATGAAACCTAGAGAAGTAGAGAAAGTCACACGTTTCAAA
AAGCCAGTCTTTGCCAAATTCGAGTTTTCCCTAGGCAGGTGTGTCCAGCTATTGTGGTCGCTCGA
TTTGGAAACTGGTCGTATGAGAATTCATACTTCCCACGACCTGACAAGCATTGCCGACTCTTGAA
AAGGTAAATAAATCTCTATCGCAAACCCACAGTTCGTGTATAAATACCGCTCTTTATCTATCACA
ATCCTCATTAAAACATCTCAATCATGGCTGCTCAAAATACTCGCTCCAACAAGTCTTCCAAGTCT
TCCAAGGATGGTAAGGACAACTACGACATTTCGGAGTTCTACGCC
Found at i:5371 original size:36 final size:36
Alignment explanation
Indices: 5268--5372 Score: 124
Period size: 37 Copynumber: 2.9 Consensus size: 36
5258 TGTCTAGTCG
* *
5268 CTTTATAGTCAATAAAACAAAAAACCCAAACTT-CGTT
1 CTTTCTAGTCAAT--AACCAAAAACCCAAACTTCCGTT
* *
5305 GTTTCTAGTCAATAACCAAAAACCCAAACTTCCTTAT
1 CTTTCTAGTCAATAACCAAAAACCCAAACTTCCGT-T
*
5342 CTTTCTAGTCAATAA-CAGAAACCCAAACTTC
1 CTTTCTAGTCAATAACCAAAAACCCAAACTTC
5373 TTAAAAATCC
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
35 17 0.28
36 17 0.28
37 26 0.43
ACGTcount: A:0.41, C:0.26, G:0.06, T:0.28
Consensus pattern (36 bp):
CTTTCTAGTCAATAACCAAAAACCCAAACTTCCGTT
Left flanking sequence: Indices 4768 -- 5267
TCTCAAGCACCAAGTAGTACCCGATATGTCTAAGCATTCTATCCAAGCAGGTGATTAGTCCCACC
GAATCTACTTCTGAGATTACCCCAAACAGGTGTAGAATATATGCGGGAGCTTGAAGTGGTGTAGA
ATATAATGTGTACCATGGTAGGAAGTAACTCAATCGTGAGCTATAGCACCCCCACCACTAAGCTC
GACTTTACCTGATGGAGGAGGGTGTGACCCATCTTCTCATTATTGTCGTGGCCGTAGAAGGTAAG
CTCATTTTGATGTATGTTTCAACACGACCTTGCCAACCCCATTGCGAACTCTGAATCAGGCAAGT
GACCTACCCACATATCGGGTATAAATACCACTCTATCTATCACAATCCCCATTACAACATCTCAA
TCATGGCTGCTCAAAACACTCGCTCTAACTCCAAGTCCTCCAAGGACGGCAAGGACAACTACGAC
ATCTCGGAATTCTATGCCGCCATGGTATGCGTCATTGTCTAGTCG
Right flanking sequence: Indices 5373 -- 5872
TTAAAAATCCTTTCTAAAAAACCTTCTTGTCTCTTTATTCTAATATTTACCAGTCGTCATCGTCG
TCATCGTCGTCGTCCAGGTCTCCCGTGGCGCCCTGGCGTTTCTTCAACGCGTTAGCAAGCGACCC
GGCAAGCGAGACCTCCTCCTGCTTCTTCTGCTTGAGCGCATCCGCCAACCCACCCGAGAGCGACG
TTTGCGCCGTCAGCTGGGTCACCTGGGACACCGGCAGCTGCGACTGCGACGGGGGAGCCGGCGCC
AGCGCGCCCGTGACCTCCTGGAGGTAGTTGAGCGGGGCCCACCCCTCGCGCGACTCGTCCAACGG
CTTGGTGAGGCCCCAGGGGCCGTTGGTCTGGGTCACGTAGTAGGTGGTGTCCTTGACGAGCGGCA
ACGACCCCGCCACCGACCCGTCGTAGTCGAAGAGAGCCACGTACTGCGGGTGCTTGGGCTTGGCC
GCAGGCGGCGGCGGCGGCGGAGCGTGGTGCTGAGCAGGCTGCGAC
Found at i:6192 original size:33 final size:33
Alignment explanation
Indices: 6155--6257 Score: 125
Period size: 33 Copynumber: 3.0 Consensus size: 33
6145 CGCTTGCTGA
*
6155 GCCTGGCGCGCTGGGTCCTGGGTCTGGTAGCCC
1 GCCTGGTGCGCTGGGTCCTGGGTCTGGTAGCCC
* **
6188 GCCTGGTGCCCTGGGTCCTGGGTCTGGTAGCTT
1 GCCTGGTGCGCTGGGTCCTGGGTCTGGTAGCCC
* *
6221 GCCTGGTTTGCTGCCGGATCCTGGGTCTGGTAGCCC
1 GCCTGG--TGC-GCTGGGTCCTGGGTCTGGTAGCCC
6257 G
1 G
6258 GGATCGCCTG
Statistics
Matches: 58, Mismatches: 9, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
33 35 0.60
35 3 0.05
36 20 0.34
ACGTcount: A:0.04, C:0.30, G:0.40, T:0.26
Consensus pattern (33 bp):
GCCTGGTGCGCTGGGTCCTGGGTCTGGTAGCCC
Left flanking sequence: Indices 5655 -- 6154
GGTAGTTGAGCGGGGCCCACCCCTCGCGCGACTCGTCCAACGGCTTGGTGAGGCCCCAGGGGCCG
TTGGTCTGGGTCACGTAGTAGGTGGTGTCCTTGACGAGCGGCAACGACCCCGCCACCGACCCGTC
GTAGTCGAAGAGAGCCACGTACTGCGGGTGCTTGGGCTTGGCCGCAGGCGGCGGCGGCGGCGGAG
CGTGGTGCTGAGCAGGCTGCGACTGGGCCGAGTGGGCCGGCTGAGCCGGCTGGGCGTGCAGTCCC
TGGCTCGACAACGAAGCAGGCGGCTTCGGAGGGTGTTTCTTCTTCACCGGAGGCGGCGGAGCCTT
CTTGTGCTTCGGCAGCGTGGGCGACGTGGGCCGGTTGCCCATGGCCGCCGCGGCCGCGGCCGCAG
CCGGGTTGGGAGGCGGAGGCTTGCGCACCCCGTGGGCTGGCGTGGCGTGCTGCATCTCGCTCGGG
TGCGGGATGGCCAGCCGCTGCGGGTACGCCGGCTGCGCTTGCTGA
Right flanking sequence: Indices 6258 -- 6757
GGATCGCCTGCTGCGCGTACCCGTGCGACGCCTGCAGTCTCACAGGGGTCGGGTGGGTCACCGGT
CTCAGGTTGCCAAACCGGTTGTAGTACTTCAGGTAGTCCACCGGCTGCGACTTGCCGCGCGGGCG
CTTCGGGTTGCGCGAGTTGGGCGGCATCCCGGGAAGCACGTGCACCGTGGCCAGCTTGTAGTAGT
CGCCGTTGGCCGGGATCTCTGGCCCCTGGCCCAGCATGAACTTGACCGTCTGGTACTTGCCCTGC
TTCTTCTGGTACTGCACCGTGGGTCCGATCTTGATGTCGAGGCCTGGGTTCAACCGCTTCAACTG
CGCCATGAGCTCGGTCTTGAACACGGTGTTGATGAACACGTCGGGCGACGTCGCGGTGAAGGTGC
GGTTGGAGAGCGCGATCCAGTTGTCCTGGAACGTCAGCAACGCCACGTACGCCAACCCGCCCACC
GGAAGCGAAAACTCCTTCTGGAGCCGCAACCGGCCCTCCACCGCC
Found at i:10180 original size:12 final size:12
Alignment explanation
Indices: 10163--10192 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
10153 GAAACGGAAC
10163 TCTCGCACGACG
1 TCTCGCACGACG
10175 TCTCGCACGACG
1 TCTCGCACGACG
10187 TCTCGC
1 TCTCGC
10193 TACAGTAGCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.13, C:0.43, G:0.23, T:0.20
Consensus pattern (12 bp):
TCTCGCACGACG
Left flanking sequence: Indices 9663 -- 10162
GAAAGGAAGATGGCTGTAGTATGTGAACGGGCTTGGCTGTTGAAAGTCTCTTCTCTGATCCGGAT
CATCGCTGTCGGCTGCTGTCGGCCAGCCACGGCAAGCAGAGATCGGAGTTGCTTAGTGGGACCAG
GAAAAGCGGGAAAGGGGAATTGACCAACAGACACTGTTTTTAAAGTATCCCCGAGTGTCCTTACA
CTCCACCGACCCTTGTCGACCGGTTTCAACCCTCTTTCGCCCGTCTCTCCTTGCCCTAGCCTGCT
GGCTAAAATATAGGGGCTCCCAACCAGGGCTGTGTTGCTGGACAAGTGACACTTGCGCCCCGTCC
CAGGTGGCTGCCGCCGGTGGCAAAGCCGTGCCAAGAACGGTGGCAGTGCCGGGCTGTGTCGTACC
GCCCCTCTACTGCCCTGCTTCCCTTTCGGGACATGCAGTTAAATGGCTCACATCCGGATCGGATC
TACGTAGCCAAAATTAGACCATGAAAAAAGGCTAAGAAACGGAAC
Right flanking sequence: Indices 10193 -- 10692
TACAGTAGCGAGAGCACGACGATCTACATTTACGAGGAGTACACCGAGTAGCTCAAGAATCTGTA
CCTATTAATACCTCTATCAAAACCTAGCACACAGCTCTAACCAAGATCAGGATCACTAGCTCTAT
CTCTTGCTAACCACCTTCTCAACACACAGCTCTTACCAGGATCACAATCATCTGCTCTATCCTCT
TGCTACCGCCATCTCGACGCGCTCACCTTGCTTTAATGCGTCCAGATCCGGACCATCTTGTCCTT
CCCGCCCAGACCGACCCGGTTGCCGTCCACAGACCAGTCCACGGCAAACACCTCGTCCACATGCC
CGGGCAAGTCCACCTTGAGCTTGCGGGTGCGCACATCCCACACCTTGAGCGTGGTGTCCTTCAGA
CACGACACAAGCAACCGGTTGTCCAGCGACCATGCGGTCTGGTACACGGGCGCAACGTGGCCCCG
GAGAGTGCCGATAAACGTGCCTTTCAACCCGTCCCAGATCTTGAT
Found at i:12383 original size:15 final size:15
Alignment explanation
Indices: 12363--12412 Score: 64
Period size: 15 Copynumber: 3.3 Consensus size: 15
12353 GATGGTTATT
*
12363 TCTGGCCCCTCTGCC
1 TCTGGCTCCTCTGCC
*
12378 TCTGGCTCGTCTGCC
1 TCTGGCTCCTCTGCC
* *
12393 TCTGGCTCTTCTGTC
1 TCTGGCTCCTCTGCC
12408 TCTGG
1 TCTGG
12413 TTCTTCCATG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.00, C:0.40, G:0.24, T:0.36
Consensus pattern (15 bp):
TCTGGCTCCTCTGCC
Left flanking sequence: Indices 11863 -- 12362
CTTGATGAGCACATTGGGGAGGTCCTCAGGGACGAGGTCGACCTCGCGGACCTGCTGAGCCTCCT
TCTTCTGGCGCTTGGAGAGGGGGGGTACAACGGTGGCCATGGTGAGATGAGATGAGTTCCCCGAT
CGTATCTATGCGATGGATTATGTAAGCAAGCCAAACCGTAGGATCGAGTAGAGAGAAGATCTAGG
AGCAATTGGGAGGGAGTGGGATGAATGTATAAATGTATATAGTAGCTGGGGGTCGATTAAACCGT
GCTATGCTTCGTGGTGTTGTCTATGCTAGTGAGGGGGGGAGCCGGATGGTGACAATCCCGTTGTC
GTAGCTCACGCTGGTGGTGCTGCTGAGCTCCATCGTCGACTCCAGGTCCTCGATGGCAGTGAGCT
CAGACTCGGTTTCTGAGAGGTCTTGTGCTGGGTCGTTAGGAATTTCCAGGGCATTAAGCGCCTCT
GTGGGCTGTTCGATGTCCACTTCAAAGTGATCATCGATGGTTATT
Right flanking sequence: Indices 12413 -- 12912
TTCTTCCATGGCTTCTGTCTCTTCTGTGGCCTCTGGCTCTTCTGTGGCCTCTGTCTCCTCTGTGG
CCTCTGGCTCTTCTGTGATGTCTTCGTGCTCTATGAGAGAACTCCCTCGTAGCGGGACAATCGAG
AACTGACACGCCCCCTCGGACTCAATGTCAAAGTAAACCACCTTGCTTGTGTTCTTGCTCTCCAC
ACGCAAACCGTACACGAGCGCCAACTCCGTATGGCTGATCCGACTTTTGTAGACCCCCTCCTCGG
CAAACCTGGGTGTTTTCTGGAGCCAGTCCCGGTAAAACACGAACCGCTGCGCGATGTAGTCGTTA
CAGATCTCGCTGGGCACAAGCATCATCCGCGAAGGCGCCCGTGACAGGTCCCGTGGGTCGCGAGG
CGCCTGGGAGCTGGTCATGGGCACAGGCCACGGCTCAAGCTGGCGGAAACGGGTGTTCAAGCACC
CCATGAGGCACACCATCGCCGTGTGGGACGTACACAACTGGGACA
Found at i:12417 original size:15 final size:15
Alignment explanation
Indices: 12372--12456 Score: 71
Period size: 15 Copynumber: 5.3 Consensus size: 15
12362 TTCTGGCCCC
*
12372 TCTGCCTCTGGCTCG
1 TCTGCCTCTGGCTCT
12387 TCTGCCTCTGGCTCT
1 TCTGCCTCTGGCTCT
* *
12402 TCTGTCTCTGGTTCT
1 TCTGCCTCTGGCTCT
* *
12417 TCCATGGCTTCTGTCTCT
1 T-C-T-GCCTCTGGCTCT
12435 TCTGTGGCCTCTGGCTCT
1 TC--T-GCCTCTGGCTCT
12453 TCTG
1 TCTG
12457 TGGCCTCTGT
Statistics
Matches: 56, Mismatches: 10, Indels: 8
0.76 0.14 0.11
Matches are distributed among these distances:
15 29 0.52
16 2 0.04
17 2 0.04
18 23 0.41
ACGTcount: A:0.01, C:0.34, G:0.22, T:0.42
Consensus pattern (15 bp):
TCTGCCTCTGGCTCT
Left flanking sequence: Indices 11872 -- 12371
CACATTGGGGAGGTCCTCAGGGACGAGGTCGACCTCGCGGACCTGCTGAGCCTCCTTCTTCTGGC
GCTTGGAGAGGGGGGGTACAACGGTGGCCATGGTGAGATGAGATGAGTTCCCCGATCGTATCTAT
GCGATGGATTATGTAAGCAAGCCAAACCGTAGGATCGAGTAGAGAGAAGATCTAGGAGCAATTGG
GAGGGAGTGGGATGAATGTATAAATGTATATAGTAGCTGGGGGTCGATTAAACCGTGCTATGCTT
CGTGGTGTTGTCTATGCTAGTGAGGGGGGGAGCCGGATGGTGACAATCCCGTTGTCGTAGCTCAC
GCTGGTGGTGCTGCTGAGCTCCATCGTCGACTCCAGGTCCTCGATGGCAGTGAGCTCAGACTCGG
TTTCTGAGAGGTCTTGTGCTGGGTCGTTAGGAATTTCCAGGGCATTAAGCGCCTCTGTGGGCTGT
TCGATGTCCACTTCAAAGTGATCATCGATGGTTATTTCTGGCCCC
Right flanking sequence: Indices 12457 -- 12956
TGGCCTCTGTCTCCTCTGTGGCCTCTGGCTCTTCTGTGATGTCTTCGTGCTCTATGAGAGAACTC
CCTCGTAGCGGGACAATCGAGAACTGACACGCCCCCTCGGACTCAATGTCAAAGTAAACCACCTT
GCTTGTGTTCTTGCTCTCCACACGCAAACCGTACACGAGCGCCAACTCCGTATGGCTGATCCGAC
TTTTGTAGACCCCCTCCTCGGCAAACCTGGGTGTTTTCTGGAGCCAGTCCCGGTAAAACACGAAC
CGCTGCGCGATGTAGTCGTTACAGATCTCGCTGGGCACAAGCATCATCCGCGAAGGCGCCCGTGA
CAGGTCCCGTGGGTCGCGAGGCGCCTGGGAGCTGGTCATGGGCACAGGCCACGGCTCAAGCTGGC
GGAAACGGGTGTTCAAGCACCCCATGAGGCACACCATCGCCGTGTGGGACGTACACAACTGGGAC
ATCGTCGTCAAGAGCAGCAGCACGTGGCTGTCGAACTTGGACACC
Found at i:12435 original size:18 final size:18
Alignment explanation
Indices: 12421--12494 Score: 112
Period size: 18 Copynumber: 4.1 Consensus size: 18
12411 GGTTCTTCCA
*
12421 TGGCTTCTGTCTCTTCTG
1 TGGCCTCTGTCTCTTCTG
*
12439 TGGCCTCTGGCTCTTCTG
1 TGGCCTCTGTCTCTTCTG
*
12457 TGGCCTCTGTCTCCTCTG
1 TGGCCTCTGTCTCTTCTG
*
12475 TGGCCTCTGGCTCTTCTG
1 TGGCCTCTGTCTCTTCTG
12493 TG
1 TG
12495 ATGTCTTCGT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 50 1.00
ACGTcount: A:0.00, C:0.32, G:0.26, T:0.42
Consensus pattern (18 bp):
TGGCCTCTGTCTCTTCTG
Left flanking sequence: Indices 11921 -- 12420
GCCTCCTTCTTCTGGCGCTTGGAGAGGGGGGGTACAACGGTGGCCATGGTGAGATGAGATGAGTT
CCCCGATCGTATCTATGCGATGGATTATGTAAGCAAGCCAAACCGTAGGATCGAGTAGAGAGAAG
ATCTAGGAGCAATTGGGAGGGAGTGGGATGAATGTATAAATGTATATAGTAGCTGGGGGTCGATT
AAACCGTGCTATGCTTCGTGGTGTTGTCTATGCTAGTGAGGGGGGGAGCCGGATGGTGACAATCC
CGTTGTCGTAGCTCACGCTGGTGGTGCTGCTGAGCTCCATCGTCGACTCCAGGTCCTCGATGGCA
GTGAGCTCAGACTCGGTTTCTGAGAGGTCTTGTGCTGGGTCGTTAGGAATTTCCAGGGCATTAAG
CGCCTCTGTGGGCTGTTCGATGTCCACTTCAAAGTGATCATCGATGGTTATTTCTGGCCCCTCTG
CCTCTGGCTCGTCTGCCTCTGGCTCTTCTGTCTCTGGTTCTTCCA
Right flanking sequence: Indices 12495 -- 12994
ATGTCTTCGTGCTCTATGAGAGAACTCCCTCGTAGCGGGACAATCGAGAACTGACACGCCCCCTC
GGACTCAATGTCAAAGTAAACCACCTTGCTTGTGTTCTTGCTCTCCACACGCAAACCGTACACGA
GCGCCAACTCCGTATGGCTGATCCGACTTTTGTAGACCCCCTCCTCGGCAAACCTGGGTGTTTTC
TGGAGCCAGTCCCGGTAAAACACGAACCGCTGCGCGATGTAGTCGTTACAGATCTCGCTGGGCAC
AAGCATCATCCGCGAAGGCGCCCGTGACAGGTCCCGTGGGTCGCGAGGCGCCTGGGAGCTGGTCA
TGGGCACAGGCCACGGCTCAAGCTGGCGGAAACGGGTGTTCAAGCACCCCATGAGGCACACCATC
GCCGTGTGGGACGTACACAACTGGGACATCGTCGTCAAGAGCAGCAGCACGTGGCTGTCGAACTT
GGACACCGCCAGCTCGCGCACAAGATCCGAGCCCGCGGGAAGCAC
Found at i:12491 original size:36 final size:36
Alignment explanation
Indices: 12407--12494 Score: 131
Period size: 36 Copynumber: 2.4 Consensus size: 36
12397 GCTCTTCTGT
* ** * *
12407 CTCTGGTTCTTCCATGGCTTCTGTCTCTTCTGTGGC
1 CTCTGGCTCTTCTGTGGCCTCTGTCTCCTCTGTGGC
12443 CTCTGGCTCTTCTGTGGCCTCTGTCTCCTCTGTGGC
1 CTCTGGCTCTTCTGTGGCCTCTGTCTCCTCTGTGGC
12479 CTCTGGCTCTTCTGTG
1 CTCTGGCTCTTCTGTG
12495 ATGTCTTCGT
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 47 1.00
ACGTcount: A:0.01, C:0.33, G:0.24, T:0.42
Consensus pattern (36 bp):
CTCTGGCTCTTCTGTGGCCTCTGTCTCCTCTGTGGC
Left flanking sequence: Indices 11907 -- 12406
CGCGGACCTGCTGAGCCTCCTTCTTCTGGCGCTTGGAGAGGGGGGGTACAACGGTGGCCATGGTG
AGATGAGATGAGTTCCCCGATCGTATCTATGCGATGGATTATGTAAGCAAGCCAAACCGTAGGAT
CGAGTAGAGAGAAGATCTAGGAGCAATTGGGAGGGAGTGGGATGAATGTATAAATGTATATAGTA
GCTGGGGGTCGATTAAACCGTGCTATGCTTCGTGGTGTTGTCTATGCTAGTGAGGGGGGGAGCCG
GATGGTGACAATCCCGTTGTCGTAGCTCACGCTGGTGGTGCTGCTGAGCTCCATCGTCGACTCCA
GGTCCTCGATGGCAGTGAGCTCAGACTCGGTTTCTGAGAGGTCTTGTGCTGGGTCGTTAGGAATT
TCCAGGGCATTAAGCGCCTCTGTGGGCTGTTCGATGTCCACTTCAAAGTGATCATCGATGGTTAT
TTCTGGCCCCTCTGCCTCTGGCTCGTCTGCCTCTGGCTCTTCTGT
Right flanking sequence: Indices 12495 -- 12994
ATGTCTTCGTGCTCTATGAGAGAACTCCCTCGTAGCGGGACAATCGAGAACTGACACGCCCCCTC
GGACTCAATGTCAAAGTAAACCACCTTGCTTGTGTTCTTGCTCTCCACACGCAAACCGTACACGA
GCGCCAACTCCGTATGGCTGATCCGACTTTTGTAGACCCCCTCCTCGGCAAACCTGGGTGTTTTC
TGGAGCCAGTCCCGGTAAAACACGAACCGCTGCGCGATGTAGTCGTTACAGATCTCGCTGGGCAC
AAGCATCATCCGCGAAGGCGCCCGTGACAGGTCCCGTGGGTCGCGAGGCGCCTGGGAGCTGGTCA
TGGGCACAGGCCACGGCTCAAGCTGGCGGAAACGGGTGTTCAAGCACCCCATGAGGCACACCATC
GCCGTGTGGGACGTACACAACTGGGACATCGTCGTCAAGAGCAGCAGCACGTGGCTGTCGAACTT
GGACACCGCCAGCTCGCGCACAAGATCCGAGCCCGCGGGAAGCAC
Found at i:13915 original size:3 final size:3
Alignment explanation
Indices: 13907--13974 Score: 55
Period size: 3 Copynumber: 22.7 Consensus size: 3
13897 GATGTCTACG
* * * * * * *
13907 TCT TCT TCT TCC TCG CCT TCT TCT TCC TCT TCC TCT TCC TCC TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
* *
13955 TCC TCT TCT TCT TCC TCT TC
1 TCT TCT TCT TCT TCT TCT TC
13975 CTCGTCCACA
Statistics
Matches: 50, Mismatches: 15, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.00, C:0.46, G:0.01, T:0.53
Consensus pattern (3 bp):
TCT
Left flanking sequence: Indices 13407 -- 13906
ACGGCCGGGGAGAACTGGGTGTCATCGCCCACCCGCGTCAGCACGTGGCTGAACCCCAGCTGCTG
GGTCGCGATGATGTCAAAGAGCGAGACCATACGCGTCTGCGCGAAAGATGGAGAAGGTGGTGATG
AATTTTTCACCGCAACACGCCTGGTAAACGGTACGCGTGGGGGAGTGTAGTAGGTGGTAGAGTGG
TAAACAATTAGGTGAGTGTATGGTGAGGCTATTAGAGTGGAGAGATGCTTCAATGTGGTTTGAAT
ATGAAAAACATAAAAAATATGGAGTACTTCGGTGAATTCTCAGCTTTGCGGAGCTCTCTAAGTAC
TGCCACTATGGTCACTACAGACGCGTTTTGTCGCTGGTTTGCCTATTCCTTATTCCGTTTATTGG
GGGTGCCCATTATCGTTACACATAATTAGTCCTTGGGGGTGGTTTCGGGGTCCAAGTCGATTTCC
TCATCCTCGTCGGCCTCGTCGGCCTCCTCTTCCTCGATGTCTACG
Right flanking sequence: Indices 13975 -- 14474
CTCGTCCACAACCTCGGGCTGCTCTTCCTCGGCCCCCTCGTTGTCCCACACAATGTTGAACCGGG
TCACCCGGGGCTTCTCCGCGAGAATGTTACGCATGACGTGGTCCACCTGCACCTTGGCCGGAGGG
TTCTCGCGCAATTCTTCGGAGTCGTACTCGTTGTTGACATAGTATCCCACCCGGACAAACTCCCG
TTCCGCGTACGAACACAGTAACAATATGACGGTCACCGACACCAATTCAGCAGCGGGGATCAATT
CCGGCAGCGGGGGGTCGGCTTTGAAGAGGAACTTGTTAATGCCAACAGGCACCGGGCCCACAAGG
ATCGAATCAAGCTCCTGGTCGTGGTCTAGCGAGTTCAGCGACCCGACGTAGGTGAGCTTCCACTC
AAGGTCCTCTTTGAGGGGCTCCAAGCATTCAAACGTGATCTCAAACTCGTAGGGATCGGTGAACT
TGGCCGGGTTGTTGAGCACCTCAATGCCTAAGAGGGACACGATTG
Found at i:13932 original size:6 final size:6
Alignment explanation
Indices: 13923--13977 Score: 74
Period size: 6 Copynumber: 9.2 Consensus size: 6
13913 TCTTCCTCGC
* * * *
13923 CTTCTT CTTCCT CTTCCT CTTCCT CCTCTT CTTCCT CTTCTT CTTCCT
1 CTTCCT CTTCCT CTTCCT CTTCCT CTTCCT CTTCCT CTTCCT CTTCCT
13971 CTTCCT C
1 CTTCCT C
13978 GTCCACAACC
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (6 bp):
CTTCCT
Left flanking sequence: Indices 13423 -- 13922
GGGTGTCATCGCCCACCCGCGTCAGCACGTGGCTGAACCCCAGCTGCTGGGTCGCGATGATGTCA
AAGAGCGAGACCATACGCGTCTGCGCGAAAGATGGAGAAGGTGGTGATGAATTTTTCACCGCAAC
ACGCCTGGTAAACGGTACGCGTGGGGGAGTGTAGTAGGTGGTAGAGTGGTAAACAATTAGGTGAG
TGTATGGTGAGGCTATTAGAGTGGAGAGATGCTTCAATGTGGTTTGAATATGAAAAACATAAAAA
ATATGGAGTACTTCGGTGAATTCTCAGCTTTGCGGAGCTCTCTAAGTACTGCCACTATGGTCACT
ACAGACGCGTTTTGTCGCTGGTTTGCCTATTCCTTATTCCGTTTATTGGGGGTGCCCATTATCGT
TACACATAATTAGTCCTTGGGGGTGGTTTCGGGGTCCAAGTCGATTTCCTCATCCTCGTCGGCCT
CGTCGGCCTCCTCTTCCTCGATGTCTACGTCTTCTTCTTCCTCGC
Right flanking sequence: Indices 13978 -- 14477
GTCCACAACCTCGGGCTGCTCTTCCTCGGCCCCCTCGTTGTCCCACACAATGTTGAACCGGGTCA
CCCGGGGCTTCTCCGCGAGAATGTTACGCATGACGTGGTCCACCTGCACCTTGGCCGGAGGGTTC
TCGCGCAATTCTTCGGAGTCGTACTCGTTGTTGACATAGTATCCCACCCGGACAAACTCCCGTTC
CGCGTACGAACACAGTAACAATATGACGGTCACCGACACCAATTCAGCAGCGGGGATCAATTCCG
GCAGCGGGGGGTCGGCTTTGAAGAGGAACTTGTTAATGCCAACAGGCACCGGGCCCACAAGGATC
GAATCAAGCTCCTGGTCGTGGTCTAGCGAGTTCAGCGACCCGACGTAGGTGAGCTTCCACTCAAG
GTCCTCTTTGAGGGGCTCCAAGCATTCAAACGTGATCTCAAACTCGTAGGGATCGGTGAACTTGG
CCGGGTTGTTGAGCACCTCAATGCCTAAGAGGGACACGATTGACA
Found at i:13937 original size:9 final size:9
Alignment explanation
Indices: 13923--13977 Score: 65
Period size: 9 Copynumber: 6.1 Consensus size: 9
13913 TCTTCCTCGC
*
13923 CTTCTTCTT
1 CTTCTTCCT
*
13932 CCTCTTCCT
1 CTTCTTCCT
*
13941 CTTCCTCCT
1 CTTCTTCCT
13950 CTTCTTCCT
1 CTTCTTCCT
*
13959 CTTCTTCTT
1 CTTCTTCCT
*
13968 CCTCTTCCT
1 CTTCTTCCT
13977 C
1 C
13978 GTCCACAACC
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 38 1.00
ACGTcount: A:0.00, C:0.47, G:0.00, T:0.53
Consensus pattern (9 bp):
CTTCTTCCT
Left flanking sequence: Indices 13423 -- 13922
GGGTGTCATCGCCCACCCGCGTCAGCACGTGGCTGAACCCCAGCTGCTGGGTCGCGATGATGTCA
AAGAGCGAGACCATACGCGTCTGCGCGAAAGATGGAGAAGGTGGTGATGAATTTTTCACCGCAAC
ACGCCTGGTAAACGGTACGCGTGGGGGAGTGTAGTAGGTGGTAGAGTGGTAAACAATTAGGTGAG
TGTATGGTGAGGCTATTAGAGTGGAGAGATGCTTCAATGTGGTTTGAATATGAAAAACATAAAAA
ATATGGAGTACTTCGGTGAATTCTCAGCTTTGCGGAGCTCTCTAAGTACTGCCACTATGGTCACT
ACAGACGCGTTTTGTCGCTGGTTTGCCTATTCCTTATTCCGTTTATTGGGGGTGCCCATTATCGT
TACACATAATTAGTCCTTGGGGGTGGTTTCGGGGTCCAAGTCGATTTCCTCATCCTCGTCGGCCT
CGTCGGCCTCCTCTTCCTCGATGTCTACGTCTTCTTCTTCCTCGC
Right flanking sequence: Indices 13978 -- 14477
GTCCACAACCTCGGGCTGCTCTTCCTCGGCCCCCTCGTTGTCCCACACAATGTTGAACCGGGTCA
CCCGGGGCTTCTCCGCGAGAATGTTACGCATGACGTGGTCCACCTGCACCTTGGCCGGAGGGTTC
TCGCGCAATTCTTCGGAGTCGTACTCGTTGTTGACATAGTATCCCACCCGGACAAACTCCCGTTC
CGCGTACGAACACAGTAACAATATGACGGTCACCGACACCAATTCAGCAGCGGGGATCAATTCCG
GCAGCGGGGGGTCGGCTTTGAAGAGGAACTTGTTAATGCCAACAGGCACCGGGCCCACAAGGATC
GAATCAAGCTCCTGGTCGTGGTCTAGCGAGTTCAGCGACCCGACGTAGGTGAGCTTCCACTCAAG
GTCCTCTTTGAGGGGCTCCAAGCATTCAAACGTGATCTCAAACTCGTAGGGATCGGTGAACTTGG
CCGGGTTGTTGAGCACCTCAATGCCTAAGAGGGACACGATTGACA
Found at i:13938 original size:12 final size:12
Alignment explanation
Indices: 13907--13974 Score: 91
Period size: 12 Copynumber: 5.4 Consensus size: 12
13897 GATGTCTACG
13907 TCTTCTTCTTCC
1 TCTTCTTCTTCC
13919 TCGCCTTCTTCTTCC
1 T---CTTCTTCTTCC
*
13934 TCTTCCTCTTCC
1 TCTTCTTCTTCC
*
13946 TCCTCTTCTTCC
1 TCTTCTTCTTCC
13958 TCTTCTTCTTCC
1 TCTTCTTCTTCC
13970 TCTTC
1 TCTTC
13975 CTCGTCCACA
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
12 37 0.76
15 12 0.24
ACGTcount: A:0.00, C:0.46, G:0.01, T:0.53
Consensus pattern (12 bp):
TCTTCTTCTTCC
Left flanking sequence: Indices 13407 -- 13906
ACGGCCGGGGAGAACTGGGTGTCATCGCCCACCCGCGTCAGCACGTGGCTGAACCCCAGCTGCTG
GGTCGCGATGATGTCAAAGAGCGAGACCATACGCGTCTGCGCGAAAGATGGAGAAGGTGGTGATG
AATTTTTCACCGCAACACGCCTGGTAAACGGTACGCGTGGGGGAGTGTAGTAGGTGGTAGAGTGG
TAAACAATTAGGTGAGTGTATGGTGAGGCTATTAGAGTGGAGAGATGCTTCAATGTGGTTTGAAT
ATGAAAAACATAAAAAATATGGAGTACTTCGGTGAATTCTCAGCTTTGCGGAGCTCTCTAAGTAC
TGCCACTATGGTCACTACAGACGCGTTTTGTCGCTGGTTTGCCTATTCCTTATTCCGTTTATTGG
GGGTGCCCATTATCGTTACACATAATTAGTCCTTGGGGGTGGTTTCGGGGTCCAAGTCGATTTCC
TCATCCTCGTCGGCCTCGTCGGCCTCCTCTTCCTCGATGTCTACG
Right flanking sequence: Indices 13975 -- 14474
CTCGTCCACAACCTCGGGCTGCTCTTCCTCGGCCCCCTCGTTGTCCCACACAATGTTGAACCGGG
TCACCCGGGGCTTCTCCGCGAGAATGTTACGCATGACGTGGTCCACCTGCACCTTGGCCGGAGGG
TTCTCGCGCAATTCTTCGGAGTCGTACTCGTTGTTGACATAGTATCCCACCCGGACAAACTCCCG
TTCCGCGTACGAACACAGTAACAATATGACGGTCACCGACACCAATTCAGCAGCGGGGATCAATT
CCGGCAGCGGGGGGTCGGCTTTGAAGAGGAACTTGTTAATGCCAACAGGCACCGGGCCCACAAGG
ATCGAATCAAGCTCCTGGTCGTGGTCTAGCGAGTTCAGCGACCCGACGTAGGTGAGCTTCCACTC
AAGGTCCTCTTTGAGGGGCTCCAAGCATTCAAACGTGATCTCAAACTCGTAGGGATCGGTGAACT
TGGCCGGGTTGTTGAGCACCTCAATGCCTAAGAGGGACACGATTG
Found at i:17065 original size:18 final size:18
Alignment explanation
Indices: 17034--17079 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
17024 GGGTGAGTCG
* *
17034 GGTGGAAGCATGGTGCAT
1 GGTGGGAGCTTGGTGCAT
17052 GGTGGGAGCTTGGTGCAT
1 GGTGGGAGCTTGGTGCAT
17070 GGT-GGAGCTT
1 GGTGGGAGCTT
17080 TAGTGGAAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 7 0.27
18 19 0.73
ACGTcount: A:0.15, C:0.11, G:0.48, T:0.26
Consensus pattern (18 bp):
GGTGGGAGCTTGGTGCAT
Left flanking sequence: Indices 16534 -- 17033
GCCGAGACCGTCAAGCGCGAGTTGTTGATGGCCCGGGTGCTGTTGTTGGGTCCCGAGTACTTCCA
GGAGCTCATTGCCCTGCACAAGTTGCAGACCAACGAGGGGCTGGCCATTCCCGACTTGCTGGCGA
CCGAGCTGGCTTTCCACCCCTCCAACTTGGCTCCTTCCGAGGCTCTTCGCCAGAAGCACACCCAC
TTGGAGCAGATCTCGCAGTTGACGCTGAAGTTTGGTGGTAGAGTCGTGGACATTTCCGACCGCAA
CGTGGTGGTTGAGCTTTCTGCCAAGCCGTCGCGTGTTTCGCTGTACATCCAGTTGTTGCAACCCT
TCGGGATTTTGGAGATTGCCCGTACTGGTATGGTGGCGTTGCCCCGGACTCCTCTTGAGGGGTTG
AACCAGGAGGACGACGACGCTATTGACGCGGCCGACATTGTCGACGCCTCCCAGTTGCCCCCTGG
TTAGTATATAGATCAATCAATATTGTATGAGAAAAGGGTGAGTCG
Right flanking sequence: Indices 17080 -- 17579
TAGTGGAAGCTAGTTAATAGCTCCCGTGGGAAAGCGAAGGATAAGAGAGCACGAAGAAAGTGAGA
AACGAAGTGAGTGGAGAACAATAGCGGGAAGAAAACTAGTTTGTTAGCATTTGGCAAACACTTAG
AGGCAGTAAGTTGTTTGGGGAGTCGTTTATCTGTTTGGAGCCCTCACATTTACTGACTCTTCCGA
CAAACACCATGCTTAAACGTATACACGTTACAAGCACGCACATGTGTCGACACAGAGACTGCCTA
ACAAGACTAGTGTTTACGTTATCCAAACGGGAACAGCCTTTCGCAAATGTCACCTAATGTCGCTG
GCTTTGTGCTACTTCAAGAATCTTGGCGACCATTGTCGTCTTCAGCCGTATCTACATCCGGGAAC
CTAGCGCATTTATTCAAACATTCTATACACTAAGGACGAGGGGCAGGGGGAGGGGGAGGGGGAAC
AGGACCCATCGGGCCGTATCCCAAAATCCCGCCGAGAGTGTTGGC
Found at i:20751 original size:6 final size:6
Alignment explanation
Indices: 20740--20837 Score: 51
Period size: 6 Copynumber: 16.8 Consensus size: 6
20730 CAACGTCCAG
* * * * * *
20740 CAACAA CAACAA CAACAT CATCAA CACCAA CACCAA CACCAA C-ACAC
1 CAACAA CAACAA CAACAA CAACAA CAACAA CAACAA CAACAA CAACAA
* * * * * *
20787 CAACAC CAACAC CAA-AA CCAAC-A CACCAA CACCAA C-ACAC CGACAA
1 CAACAA CAACAA CAACAA -CAACAA CAACAA CAACAA CAACAA CAACAA
20833 CAACA
1 CAACA
20838 CACCAATACC
Statistics
Matches: 75, Mismatches: 12, Indels: 10
0.77 0.12 0.10
Matches are distributed among these distances:
5 10 0.13
6 65 0.87
ACGTcount: A:0.53, C:0.44, G:0.01, T:0.02
Consensus pattern (6 bp):
CAACAA
Left flanking sequence: Indices 20240 -- 20739
TCTAACAAATTTTGGAGCGTCTGCATGTAAAAACGGCCCCCTCTAACAAACAACCACCCCCACTA
TACGACGAGCTATACGACGACGATTCAGGATTTGCTGGAGACTTTACGAGAATTACATAACACGT
TATGTTAGCCGCTTTACGAGCTGACCTAATAAACTGGTGCGGCTCAGTGATGCCATGTGATATTT
GTCACGTGACTTTACTGTTGATATCGTAGATAGCGTTGATTATGGCGAACCTGTATATATCCTAA
ATACTACTATAAGCCCTCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACCCCGAAGGCGC
ACCCAGTGCTTAACTAAATAATTATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGGG
GAAAAAACGGTGCCAATGGCACCCGATCCAACGAATCGAATCGAGTACCACTGAGACCACCAACA
GGGGGAAAAGGAGCCATTGGCATCCAACCCTTAAACAACGTCCAG
Right flanking sequence: Indices 20838 -- 21337
CACCAATACCAACACTCCAACACCAACACTCCAATAAGAGGGGGTTGTACCGCTAGTACTTCTGA
TATCGTCTCTCATATGGCAAAGGAAGCGAAGCCCAGAGGCTTGCAACTCCCCGCGCCGACCACGG
GATGGTTCTGTGGCGATACCGCCCATCCTGACGCTAGATTGCACCTCCCACCTCCCGGCCCGTCG
GCCATCGAGTAGAAGCGTGCAACTGCACATGTCAGGACTGTTCGAGGACCCGTAGCTGGTAGGTG
GCCAACCTACCAGTAACAAACCCTGTCACCAGACCAACAGACGCTGAGCCAACCACCCCTGCGCA
AGCGCTAAGGGAGGACGACCCAGCCGAGAGACTCCATCAGAAATACCAGCAGCACCGAGGCTGTG
GTGAGCAAGTATCACCACGCTAACGACAAGCTTTGATTTGCCTCCTTGAGGGGATTTTTTTCCCC
CATCTTCTTTGATTTTCTCTTTGCTTGTCGCTGCCTTCCGTAGTA
Found at i:20788 original size:14 final size:14
Alignment explanation
Indices: 20746--20871 Score: 143
Period size: 14 Copynumber: 9.2 Consensus size: 14
20736 CCAGCAACAA
* *
20746 CAACAACAACATCAT
1 CAACACCAACA-CAC
20761 CAACACC-A-ACAC
1 CAACACCAACACAC
20773 CAACACCAACACAC
1 CAACACCAACACAC
20787 CAACACC-A-ACAC
1 CAACACCAACACAC
*
20799 CAAAACCAACACAC
1 CAACACCAACACAC
20813 CAACACCAACACAC
1 CAACACCAACACAC
* *
20827 CGACAACAACACAC
1 CAACACCAACACAC
* *
20841 CAATACCAACACTC
1 CAACACCAACACAC
*
20855 CAACACCAACACTC
1 CAACACCAACACAC
20869 CAA
1 CAA
20872 TAAGAGGGGG
Statistics
Matches: 96, Mismatches: 11, Indels: 9
0.83 0.09 0.08
Matches are distributed among these distances:
12 19 0.20
13 4 0.04
14 67 0.70
15 6 0.06
ACGTcount: A:0.50, C:0.45, G:0.01, T:0.04
Consensus pattern (14 bp):
CAACACCAACACAC
Left flanking sequence: Indices 20246 -- 20745
AAATTTTGGAGCGTCTGCATGTAAAAACGGCCCCCTCTAACAAACAACCACCCCCACTATACGAC
GAGCTATACGACGACGATTCAGGATTTGCTGGAGACTTTACGAGAATTACATAACACGTTATGTT
AGCCGCTTTACGAGCTGACCTAATAAACTGGTGCGGCTCAGTGATGCCATGTGATATTTGTCACG
TGACTTTACTGTTGATATCGTAGATAGCGTTGATTATGGCGAACCTGTATATATCCTAAATACTA
CTATAAGCCCTCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACCCCGAAGGCGCACCCAG
TGCTTAACTAAATAATTATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGGGGAAAAA
ACGGTGCCAATGGCACCCGATCCAACGAATCGAATCGAGTACCACTGAGACCACCAACAGGGGGA
AAAGGAGCCATTGGCATCCAACCCTTAAACAACGTCCAGCAACAA
Right flanking sequence: Indices 20872 -- 21371
TAAGAGGGGGTTGTACCGCTAGTACTTCTGATATCGTCTCTCATATGGCAAAGGAAGCGAAGCCC
AGAGGCTTGCAACTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCTGACGC
TAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCACATGTCA
GGACTGTTCGAGGACCCGTAGCTGGTAGGTGGCCAACCTACCAGTAACAAACCCTGTCACCAGAC
CAACAGACGCTGAGCCAACCACCCCTGCGCAAGCGCTAAGGGAGGACGACCCAGCCGAGAGACTC
CATCAGAAATACCAGCAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAAGCTTT
GATTTGCCTCCTTGAGGGGATTTTTTTCCCCCATCTTCTTTGATTTTCTCTTTGCTTGTCGCTGC
CTTCCGTAGTAACGGGAAAGGAGCCGGGCTTGCAGGGTGCAAGCG
Found at i:20788 original size:20 final size:20
Alignment explanation
Indices: 20763--20871 Score: 107
Period size: 20 Copynumber: 5.3 Consensus size: 20
20753 AACATCATCA
20763 ACACCAACACCAACACCAAC
1 ACACCAACACCAACACCAAC
20783 ACACCAACACCAACACCAA-
1 ACACCAACACCAACACCAAC
20802 A-ACCAACACACCAACACCAAC
1 ACACC-A-ACACCAACACCAAC
* * *
20823 ACACCGACAACAACA-CACC
1 ACACCAACACCAACACCAAC
*
20842 AATACCAACACTCCAACACCAAC
1 -ACACCAACA--CCAACACCAAC
*
20865 ACTCCAA
1 ACACCAA
20872 TAAGAGGGGG
Statistics
Matches: 72, Mismatches: 9, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
18 3 0.04
19 5 0.07
20 47 0.65
21 1 0.01
22 13 0.18
23 3 0.04
ACGTcount: A:0.50, C:0.47, G:0.01, T:0.03
Consensus pattern (20 bp):
ACACCAACACCAACACCAAC
Left flanking sequence: Indices 20263 -- 20762
CATGTAAAAACGGCCCCCTCTAACAAACAACCACCCCCACTATACGACGAGCTATACGACGACGA
TTCAGGATTTGCTGGAGACTTTACGAGAATTACATAACACGTTATGTTAGCCGCTTTACGAGCTG
ACCTAATAAACTGGTGCGGCTCAGTGATGCCATGTGATATTTGTCACGTGACTTTACTGTTGATA
TCGTAGATAGCGTTGATTATGGCGAACCTGTATATATCCTAAATACTACTATAAGCCCTCAGTAC
GGCTTCAGGGTAGCCCGCTCATGCAGGCTACCCCGAAGGCGCACCCAGTGCTTAACTAAATAATT
ATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGGGGAAAAAACGGTGCCAATGGCACC
CGATCCAACGAATCGAATCGAGTACCACTGAGACCACCAACAGGGGGAAAAGGAGCCATTGGCAT
CCAACCCTTAAACAACGTCCAGCAACAACAACAACAACATCATCA
Right flanking sequence: Indices 20872 -- 21371
TAAGAGGGGGTTGTACCGCTAGTACTTCTGATATCGTCTCTCATATGGCAAAGGAAGCGAAGCCC
AGAGGCTTGCAACTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCTGACGC
TAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCACATGTCA
GGACTGTTCGAGGACCCGTAGCTGGTAGGTGGCCAACCTACCAGTAACAAACCCTGTCACCAGAC
CAACAGACGCTGAGCCAACCACCCCTGCGCAAGCGCTAAGGGAGGACGACCCAGCCGAGAGACTC
CATCAGAAATACCAGCAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAAGCTTT
GATTTGCCTCCTTGAGGGGATTTTTTTCCCCCATCTTCTTTGATTTTCTCTTTGCTTGTCGCTGC
CTTCCGTAGTAACGGGAAAGGAGCCGGGCTTGCAGGGTGCAAGCG
Found at i:20863 original size:6 final size:6
Alignment explanation
Indices: 20761--20866 Score: 92
Period size: 6 Copynumber: 17.0 Consensus size: 6
20751 ACAACATCAT
*
20761 CAACAC CAACAC CAACAC CAACACAC CAACAC CAACAC CAAAAC CAACACAC
1 CAACAC CAACAC CAACAC C-A-ACAC CAACAC CAACAC CAACAC C-A-ACAC
* * *
20813 CAACAC CAACA- CACCGA- CAACAA C-ACAC CAATAC CAACACTC CAACAC
1 CAACAC CAACAC CAAC-AC CAACAC CAACAC CAACAC CAACA--C CAACAC
20861 CAACAC
1 CAACAC
20867 TCCAATAAGA
Statistics
Matches: 84, Mismatches: 7, Indels: 18
0.77 0.06 0.17
Matches are distributed among these distances:
5 8 0.10
6 57 0.68
7 4 0.05
8 15 0.18
ACGTcount: A:0.50, C:0.47, G:0.01, T:0.02
Consensus pattern (6 bp):
CAACAC
Left flanking sequence: Indices 20261 -- 20760
TGCATGTAAAAACGGCCCCCTCTAACAAACAACCACCCCCACTATACGACGAGCTATACGACGAC
GATTCAGGATTTGCTGGAGACTTTACGAGAATTACATAACACGTTATGTTAGCCGCTTTACGAGC
TGACCTAATAAACTGGTGCGGCTCAGTGATGCCATGTGATATTTGTCACGTGACTTTACTGTTGA
TATCGTAGATAGCGTTGATTATGGCGAACCTGTATATATCCTAAATACTACTATAAGCCCTCAGT
ACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACCCCGAAGGCGCACCCAGTGCTTAACTAAATAA
TTATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGGGGAAAAAACGGTGCCAATGGCA
CCCGATCCAACGAATCGAATCGAGTACCACTGAGACCACCAACAGGGGGAAAAGGAGCCATTGGC
ATCCAACCCTTAAACAACGTCCAGCAACAACAACAACAACATCAT
Right flanking sequence: Indices 20867 -- 21366
TCCAATAAGAGGGGGTTGTACCGCTAGTACTTCTGATATCGTCTCTCATATGGCAAAGGAAGCGA
AGCCCAGAGGCTTGCAACTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCT
GACGCTAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCACA
TGTCAGGACTGTTCGAGGACCCGTAGCTGGTAGGTGGCCAACCTACCAGTAACAAACCCTGTCAC
CAGACCAACAGACGCTGAGCCAACCACCCCTGCGCAAGCGCTAAGGGAGGACGACCCAGCCGAGA
GACTCCATCAGAAATACCAGCAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAA
GCTTTGATTTGCCTCCTTGAGGGGATTTTTTTCCCCCATCTTCTTTGATTTTCTCTTTGCTTGTC
GCTGCCTTCCGTAGTAACGGGAAAGGAGCCGGGCTTGCAGGGTGC
Found at i:41730 original size:18 final size:18
Alignment explanation
Indices: 41686--41738 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
41676 TCAGCTCTTC
*
41686 GACCGGGCTC-GCTGCTTA
1 GACCGGGCTCAGC-GCTCA
* *
41704 GGCCCGGCTCAGCGCTCA
1 GACCGGGCTCAGCGCTCA
41722 GACCGGGCTCAGCGCTC
1 GACCGGGCTCAGCGCTC
41739 TCCAGAGACC
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
18 27 0.93
19 2 0.07
ACGTcount: A:0.11, C:0.40, G:0.34, T:0.15
Consensus pattern (18 bp):
GACCGGGCTCAGCGCTCA
Left flanking sequence: Indices 41186 -- 41685
GTCCCTGACGCCCAGGCGCCGCCAGCTGCTGGCTGTTGACGAGTCCGGCTTGCTGGAGGACTCCC
CCGTGTTCGATCTCCCCGCCAACGTCGCCCGTGTGGCCCTGCTTGCCCTGGCAGTGGAGGACACC
ACCCACCGGTTGGACCAGCTCCAGACGCAGCACACCGCGCTCGCGCTGTTCAACGAGAGCATACT
GAGCTTGCTCTACGGGCTCTCGATGACCATGTGGTGTGTAGACTTCCCCGGTGCCCCGACCCCGG
CGGAGATCCGACGGGCCCCTCCGGAAGTGCTCAGTGCCGCTCAGCGGCGAGACATGGCCAACCGG
GTGGCCCAGCTCGAGCTGCGGAACGACGTCGTGGAGAAGATGATTGCTGAGAGACACAGACAGGC
GGCAGAGGCCGAGGAGGAGGAGCGGAGGAACGCAGAGCGCGACCGGTTCGTGAAGGGGACGCCCA
GACAGCCTGCGACGCGGCTGGGGCCTCGTCCCGGGTCAGCTCTTC
Right flanking sequence: Indices 41739 -- 42238
TCCAGAGACCCGATCACCCGGGTGCTGAGGAGTACGGAGGGGAGGGGAGTGAGAGGAGTACCGGG
AGGAGGAAGAGTACCGCCAGCACGGGTGGGTTCCACGACTGCTTACCCAGCGTACGACCGGCCTC
CCCGCTCCCTGTCCCGCGCTGGCCGCGACCAGGGAGCCAACCCGATCAGCCGGTTGGCCCTGGGG
TCGGCCCGGACCAACAAGAGTGTCCAGTTGCGGGAGGCGGCCACCCAGCGGCGGTTGGCGCGGAT
GAACCAGCGGAGGTAGCATAGCATTGTATTATAGTGTAATATTAACGTGGATAAGGGAAAGGTGG
GTTTTATTGAATTGGGTTTTAAGGTGGCTATATGATTGGAGGCTGGTGTATTGATGGGTATATAG
GTGGAGGGGAGGTGGAGAAGAGGTGGGTAGGGTTGTTGTGACCGTTGGTGGGTACTCCTTTGGTC
ACTCTTAAGTTCGGTGACTGTTCTTGGGTCAATTGGTTGTAATGA
Found at i:49802 original size:19 final size:19
Alignment explanation
Indices: 49758--49809 Score: 77
Period size: 19 Copynumber: 2.7 Consensus size: 19
49748 GAGGCTACCA
*
49758 TGCAATGGCACATTTAGCT
1 TGCAATGGCTCATTTAGCT
**
49777 TTTAATGGCTCATTTAGCT
1 TGCAATGGCTCATTTAGCT
49796 TGCAATGGCTCATT
1 TGCAATGGCTCATT
49810 AAATGTTGCT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (19 bp):
TGCAATGGCTCATTTAGCT
Left flanking sequence: Indices 49258 -- 49757
TTTTCCACGTAGATTAGCTCTAGGGGCTGAATGATCGGTGTTTGGTGGGCGACCGAACGGCGTGT
CGATGCTCTTGGCAACCAGCTGATTCAGGCACGATGCAGCCACTGTCAGCCTTGCGGGACCTATC
GGCAAAAACCGGTGGACAGCCCCAGTCAGAGCGTGATGGGCCCACAATCCAAAGGTGGCTGTATG
CGTTAACGACCCCGCTCGTCTAGTTGACGGTAAGAATGGGCTCTGAACCACCGTTTAATACTGAA
ATTGTGAGACTAGAGCAGGATGTAGAGAGAGGGAGACGGAAGGGTACACCGCCCTCAAGGAGTGT
CATCCTCTAAGGATCATGCTGTAGGGGTCTTTTAGGCGTCTTTTAGTGCTTTTGTTTGCCCTAAA
TACGTGGGGGTTCTGACAGAAGCATCGAATCTGGGCCTACATTGACACTAAGACACCGGTCAAGG
GCTCCTGAGTGCATGAATGGGACAAACTAAAAGCTGAGGCTACCA
Right flanking sequence: Indices 49810 -- 50309
AAATGTTGCTCGAAATCTCCTTGTAGTGTCATCGGAGGCTTATCTACTGAGTCTACCACAAAACC
ACTTGAAAAATTCACGGCTCTCCCAGCTTGTATCTGGGCTTAGTAGGGTCTTACTGGTGCAATAT
GAGGGTCGTGATTTCCATGAGGCGAACCTACTCGTACTTTGGTGCTTCCTTGACCATACAGCGTG
AGCTCGAACTTCAAGTAGGCGGGCAAGTCGGATCGACACACTCCGGGATGCTGCATCAAACGGGG
ACGCGGCTTAGGTGCTTTCGCCGTGCTGCTACTGCGACATTGTGATCTTCAATCGACTCGCCTGT
TTTGCAAACACAAGCCTCCGGGTGTACTTATCTGTAGAATTCTTCTGGGAAACTCTTCTGGGTAC
GACCAAAGCTGAGACTCGACCACACCTAGTGAATAGCTGCAACCAAGAACATATGCAGCAATGCT
CAGGAGACTGGGTAGCAAAAAACAGGGATCTTTCTTATCTATTGG
Found at i:52000 original size:15 final size:15
Alignment explanation
Indices: 51982--52010 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
51972 CTGGTGGGGG
51982 TGGTGTGTGCGCTGC
1 TGGTGTGTGCGCTGC
51997 TGGTGTGTGCGCTG
1 TGGTGTGTGCGCTG
52011 GTGTGCGTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.00, C:0.17, G:0.48, T:0.34
Consensus pattern (15 bp):
TGGTGTGTGCGCTGC
Left flanking sequence: Indices 51482 -- 51981
GTAGGGCAACACCCTGACTAGGGCCTCCCAGAACCCGTCCTTCTTGCGCTGGCGCAGCCAGATCC
GGGCGCACACGTCGGCCCGCGAGAGCTGGTGCAAGTAACAGTAGCCAGCGATGAAGTAGTCCACG
GCGTCGATCTCGGCCCGGGCAAACATCCGCGGGCCCGCCCGCTGGCGCTCCCCGGGGACACAGGG
GTGGCGGCGCCCGTCGTCGGTCTGGTTGTACCAGGCGACGGCCCGAGCGCTGGCCTCCTCGACCA
CCTGGTCCACCGAGGGCATGTGCGCGTAGGTGCGCTCCAACTCGGCGGCACAGTACTCGCGCGGG
TTGTGGCGCTGGTGCCGCAGCACCTCTGGTGCCGGGGCAGGGTCGGTGTCGGACCCCGGGGACGG
GGTGCGGCGTGGGGGCTTCGCGAGCGACGCGCGCACGGCGGAGAGGGCCAGCGAGAGGGCGCTGG
AGCGGGTGGAGGTGCTGGTGCGGGATGGCGGGGTGCTGGTGGGGG
Right flanking sequence: Indices 52011 -- 52510
GTGTGCGTGCTGCTAGTGTCTGGGTGGGAATCACTGGTGTGGGTGCCAGCGTGGGTGGCAGTGTG
GCCACGGCTGCGAGTGTAGGTAGCATGATGGGTACCAGTGGCACCCTGGTGGGTACCAGTACCAC
TGTGAGTAGTCCCCGTACCGTTGTGAGAGGCCCCCGTGCCTGTGTGTCCATTCTCAGTGTCTGCG
TGGTCGTCCCTGCCTCCGGTGCTGTCGAGTGCCAGCGCCGCGTGGGCCAACTGGTGAATCGCCAG
CTCGCGGATGTGCTTCGTGAGCTCGCGCACATCCAAGAGCGCCTCCTCCACGAGCTTTTCGTGGT
CGGAGGGCGACGGCGAGAACTCTGTGGGCGACGCGTTCGAGGGCGCCAGCGGGGTGTGCGAGGTG
TCGCTGTCGCTGTCCTTGTAGGTGCGGTAGTGCTTGTCCTCCTCCTCCTCCTCCGCCAGCCCCGT
CAACTCCTCGATCTCCTCCATCAACAGGTCCTCGGCTAGGTACTC
Found at i:52962 original size:11 final size:11
Alignment explanation
Indices: 52930--52971 Score: 57
Period size: 11 Copynumber: 3.7 Consensus size: 11
52920 GGGTTAGCGA
52930 GGCGGGTGCAG
1 GGCGGGTGCAG
*
52941 GTGCCGGTGCAG
1 G-GCGGGTGCAG
52953 GGCGGGTGCAG
1 GGCGGGTGCAG
*
52964 TGCGGGTG
1 GGCGGGTG
52972 TAACATAGAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
11 17 0.63
12 10 0.37
ACGTcount: A:0.07, C:0.19, G:0.60, T:0.14
Consensus pattern (11 bp):
GGCGGGTGCAG
Left flanking sequence: Indices 52430 -- 52929
GTGCTTGTCCTCCTCCTCCTCCTCCGCCAGCCCCGTCAACTCCTCGATCTCCTCCATCAACAGGT
CCTCGGCTAGGTACTCCGGCTGCAACTCCATGAGGTTGGGATCGATGTCGTGCTTCGGCCGTGTT
CGCAGGCCCCGAGGGTCCTTTTTGGGCAGCCTGGTGGCCACCCGCCGCCGCTTGTGGCCCTCCTC
GAGCTCCTCGAACTCCGCGAGGTAGTCGTCCCCCTCCAACAACCACGCGAGCTCCTCCTCTGCGC
GTTTGCGAGGCACCGTAGGCCGGTGCAGCAAGGTGCCTCCCACGTACTTGATGACGGCGGCCTCG
ACGGTGTCGCCCAAGTGGTCCACGTCGGGCTCGTCCTTCTTGGTCATCAGCAAGAGCGCCTGGGC
TCCGCCGATGTCTTGTTGGGCGTCCATTAACGGTAGTTACCCGGTCGCACCGCGATGAGGTGCTG
TGGGGCGTGCGGCTGACGGCGCTACCATGTTGTTTGGGTTAGCGA
Right flanking sequence: Indices 52972 -- 53471
TAACATAGACAGCCGGTGTAGAAGCGGCCAGACACGCTGGACGACAGCAAGAGACCGTTGAACTT
TATCTGCGGCGTGCCATTCACGAGGCGAACCAATTGAGCAGGACTCAGCCACGGCGTGAACGATA
ACCGGGATCAGCACGGACTAGGGGTACAGGTTTCAGGCGAGCACAATCAGCACCAGATCAGCACC
AGATCAGTACAAGCTCAGCATAAGCCCAGCACAAGCTCCGCACAAGCTCTGCACACGATAACTAC
ATCACAACACACGGTTACACGAACACACCACACAACACACCGCACAAACACCCCACCCTACCTCA
CCCACCTCCCCATAGTTCAGGTTCACCACACGATCTGAACTAAATTATCAACCAGACCACCGGTT
GAACCACTTCAAGACTTCCACACAGTCTACCAGTCTACCACACAGTCTACACAACCTTTTTTTCA
TGGACTTGTCTTCCCTTCTGAAGGAGGACCTCGTTGCCAAAGTGC
Found at i:53184 original size:11 final size:11
Alignment explanation
Indices: 53148--53221 Score: 67
Period size: 11 Copynumber: 6.7 Consensus size: 11
53138 GCGAGCACAA
* *
53148 TCAGCACCAGA
1 TCAGCACAAGC
* *
53159 TCAGCACCAGA
1 TCAGCACAAGC
*
53170 TCAGTACAAGC
1 TCAGCACAAGC
*
53181 TCAGCATAAGC
1 TCAGCACAAGC
*
53192 CCAGCACAAGC
1 TCAGCACAAGC
*
53203 TCCGCACAAGC
1 TCAGCACAAGC
*
53214 TCTGCACA
1 TCAGCACA
53222 CGATAACTAC
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 53 1.00
ACGTcount: A:0.34, C:0.36, G:0.18, T:0.12
Consensus pattern (11 bp):
TCAGCACAAGC
Left flanking sequence: Indices 52648 -- 53147
AGTCGTCCCCCTCCAACAACCACGCGAGCTCCTCCTCTGCGCGTTTGCGAGGCACCGTAGGCCGG
TGCAGCAAGGTGCCTCCCACGTACTTGATGACGGCGGCCTCGACGGTGTCGCCCAAGTGGTCCAC
GTCGGGCTCGTCCTTCTTGGTCATCAGCAAGAGCGCCTGGGCTCCGCCGATGTCTTGTTGGGCGT
CCATTAACGGTAGTTACCCGGTCGCACCGCGATGAGGTGCTGTGGGGCGTGCGGCTGACGGCGCT
ACCATGTTGTTTGGGTTAGCGAGGCGGGTGCAGGTGCCGGTGCAGGGCGGGTGCAGTGCGGGTGT
AACATAGACAGCCGGTGTAGAAGCGGCCAGACACGCTGGACGACAGCAAGAGACCGTTGAACTTT
ATCTGCGGCGTGCCATTCACGAGGCGAACCAATTGAGCAGGACTCAGCCACGGCGTGAACGATAA
CCGGGATCAGCACGGACTAGGGGTACAGGTTTCAGGCGAGCACAA
Right flanking sequence: Indices 53222 -- 53721
CGATAACTACATCACAACACACGGTTACACGAACACACCACACAACACACCGCACAAACACCCCA
CCCTACCTCACCCACCTCCCCATAGTTCAGGTTCACCACACGATCTGAACTAAATTATCAACCAG
ACCACCGGTTGAACCACTTCAAGACTTCCACACAGTCTACCAGTCTACCACACAGTCTACACAAC
CTTTTTTTCATGGACTTGTCTTCCCTTCTGAAGGAGGACCTCGTTGCCAAAGTGCGCGAACTCGA
GCGGGTGCTCCAGGACTTCCAAGAACTGCTGAAGGAACTCGAGCAGGCACTCGAAGAAGAGCTCG
AGCAGCAGGAGCGCGAGAACACAGCCACCAAGCGCCAGCTAGCCCAGCTCACCCGCGACCACGAG
GCCAACACCCGCAAGGTGTTTGCCCTCACCACCGAAAAGAACACCATGGTTGAGCACCACCTCGC
GGAGGTGCGCCGCCGCGACGACGAGGTGCGGCACCTCCGCTCCCA
Found at i:54940 original size:13 final size:12
Alignment explanation
Indices: 54921--54951 Score: 53
Period size: 13 Copynumber: 2.5 Consensus size: 12
54911 CGGGTGTGGA
54921 GAAATGCTCGAG
1 GAAATGCTCGAG
54933 GCAAATGCTCGAG
1 G-AAATGCTCGAG
54946 GAAATG
1 GAAATG
54952 ACGGGGTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 6 0.33
13 12 0.67
ACGTcount: A:0.35, C:0.16, G:0.32, T:0.16
Consensus pattern (12 bp):
GAAATGCTCGAG
Left flanking sequence: Indices 54421 -- 54920
GGCTCGTCTAAGAATCCTCAAGGACAACATTCGTGTATTAATTACAGACCAACGGCAACACACCG
AGGGCCAAAAAATCAAACTAAATCAAACGCCCGAAGATCGGGCAGGAAAGCGGGAGGCTCGTTCT
GGTTGAGATTTCCACGGCAAAACCAGATGAGGAGCAACCCGGACAAGGCATCCATTGACATTTGC
AATGGCAAGAGCGTGACAGTGCCGTCGAGTGGACCTTTCGACGACACCGCGCTCGAGGTGGGCCG
GTGTGAACCCACGCCTTGGCACGAAACAGTGGCCAAAACAGGAACACACCTGGGTCAGATTTCCA
CGGCTACCCCAGGTGGCCACCCGAATTATTGACAATCAGCGAAGTGGCGAATTAGCCTTTATTTA
TAGTTTTTTTTTTATGGTTGCCGCATAACTTCTATATCCGGAAAGCTTAAATAAAAACTATTGTA
TAAAGGTAATTAGACAAGGGAGCTAAGCCAAACTTCGGGTGTGGA
Right flanking sequence: Indices 54952 -- 55451
ACGGGGTTTTCACAAACCATGTCCGAAGAGTAGGCGTCGAACAACGCTCGGATTACTTTACTTTT
CGTCATAATATTTTCCCCGAGAAAATGAGACGCTCGGAAAACATTCCCCCCGTTTCATTGGCCAA
AAGAAGGCAAAAGTCTTGAAGATGAAAATCGTGTATTCATGGGACGGGTTGTACCGTAAGACTAG
CGACGCTAGTTTCATCACCTGCTGGTCGTCGTATGCTTCTGTCAATCTTACAGGTGACACAAAAG
TGCAGAATCGAAGGTCTCGGGGAGCATAGACGGTTTCAAGCCAGAAACACCTGTAAAGAAAGACG
GAAAATAGGAGCGACGTATTCTTTGGATTTGTTTGTTGTCTTTTGGTGGTATAGTGACGTTGTCA
AGGCGTTTTTGGGGCATGCAATATTGATGGAAGAAACCACGTATGAGGCATACAACTCAAAGAGT
TTTGTAAAGTTGCAAGAAAAAGCACCAAAAGACTTTGAGTTATGG
Found at i:60079 original size:15 final size:15
Alignment explanation
Indices: 60059--60136 Score: 113
Period size: 15 Copynumber: 5.2 Consensus size: 15
60049 ACCTAAAACA
60059 CCTTTCGTCCCCTCT
1 CCTTTCGTCCCCTCT
60074 CCTTTCGTCCCCTCT
1 CCTTTCGTCCCCTCT
* *
60089 CCTCTCGCCCCCTCT
1 CCTTTCGTCCCCTCT
60104 CCTTTCGTCCCCTCT
1 CCTTTCGTCCCCTCT
*
60119 CCTCTCG-CCCCTCCT
1 CCTTTCGTCCCCT-CT
60134 CCT
1 CCT
60137 GTCCCCTTTG
Statistics
Matches: 57, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
14 5 0.09
15 52 0.91
ACGTcount: A:0.00, C:0.59, G:0.06, T:0.35
Consensus pattern (15 bp):
CCTTTCGTCCCCTCT
Left flanking sequence: Indices 59559 -- 60058
ATGAGGCCTAATTGAGATCTGACCCCTGTAAAATGGCAGGTCACTCTGAACAACTGAAAGATTGA
GCCCAATGTGGTAGTCTTCAACTGATTGTTCAGCGAGGCAGTTCCTGGAAGCTCCCAGCTGCCAA
CTCGGCTAAGGCAATAGATAATGGTTTTGAGTTTTTAGAAAGCGAACAGAGTCTAAGGGAGGGGA
TTCAACTGCTTTTTTTTTGATTTCCGAGATGAATTTCAAACCTTGGATCGCTTTCTACCATAGCA
GTACTGCCGACTGTTCAAAGCACACAGATATCTCACCAGGCCTACGAACAATTCATCCCATCTAC
CCCTTCGGAAGTGCCATGTTCCGTAAGTACGTCACTCATTTTTACACGCATTATTTCTTCCTTCG
CCTCAACCCATCCAGTAGATAAATAACCCCCCTCTTCAACGCCCCTTCATCTCATATCCCTCAAT
ACCCCAAGGCCACCACCACCACAAACACCGCCTACACCTAAAACA
Right flanking sequence: Indices 60137 -- 60636
GTCCCCTTTGGGCGATTTTTTTCAGGCAAAAACCGGGCCTGCACACAACCTCGCCTCCATTGGGT
GCAAATAGATCGTCAATCCTCACCACCAGGCATGGCCACCCTCAAGGACCAAGGCAACCAGGCGT
ACGGTCGCGGCGAGTACACCAAGGCAGCCAAGCTCTACCGCGAGGCCCTCAAAGCCGACCCCAAG
GCCACCGTGCTCTACCTGAACCGGTGCCAGTGCTTCCTCAAGCTCGGGGATTTTCGGCGCGCACT
CAACGACGCGGTGGCGGCGGTCAACACCTTTGACGACCAGACCACCCTGGCACTCAAACTGAAGG
TGTACTACCGCAAGGGGATGGCGTTTGTGGGGTTGGGCGAGCGAAAACGCGCCCACTACTGTTTT
GAAAAGGCTGTGGGCTTCGACTCGGGCAACCGCGACGCCCGGGCCCAGATGGCCCAGTTGGGTAA
TTTAGCCGCGGAGGTGCCCGTGGAGGTGGTGGGCGAGCTTCCACG
Found at i:60102 original size:30 final size:30
Alignment explanation
Indices: 60067--60129 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
60057 CACCTTTCGT
60067 CCCCTCTCCTTTCGTCCCCTCTCCTCTCGC
1 CCCCTCTCCTTTCGTCCCCTCTCCTCTCGC
60097 CCCCTCTCCTTTCGTCCCCTCTCCTCTCGC
1 CCCCTCTCCTTTCGTCCCCTCTCCTCTCGC
60127 CCC
1 CCC
60130 TCCTCCTGTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.00, C:0.62, G:0.06, T:0.32
Consensus pattern (30 bp):
CCCCTCTCCTTTCGTCCCCTCTCCTCTCGC
Left flanking sequence: Indices 59567 -- 60066
TAATTGAGATCTGACCCCTGTAAAATGGCAGGTCACTCTGAACAACTGAAAGATTGAGCCCAATG
TGGTAGTCTTCAACTGATTGTTCAGCGAGGCAGTTCCTGGAAGCTCCCAGCTGCCAACTCGGCTA
AGGCAATAGATAATGGTTTTGAGTTTTTAGAAAGCGAACAGAGTCTAAGGGAGGGGATTCAACTG
CTTTTTTTTTGATTTCCGAGATGAATTTCAAACCTTGGATCGCTTTCTACCATAGCAGTACTGCC
GACTGTTCAAAGCACACAGATATCTCACCAGGCCTACGAACAATTCATCCCATCTACCCCTTCGG
AAGTGCCATGTTCCGTAAGTACGTCACTCATTTTTACACGCATTATTTCTTCCTTCGCCTCAACC
CATCCAGTAGATAAATAACCCCCCTCTTCAACGCCCCTTCATCTCATATCCCTCAATACCCCAAG
GCCACCACCACCACAAACACCGCCTACACCTAAAACACCTTTCGT
Right flanking sequence: Indices 60130 -- 60629
TCCTCCTGTCCCCTTTGGGCGATTTTTTTCAGGCAAAAACCGGGCCTGCACACAACCTCGCCTCC
ATTGGGTGCAAATAGATCGTCAATCCTCACCACCAGGCATGGCCACCCTCAAGGACCAAGGCAAC
CAGGCGTACGGTCGCGGCGAGTACACCAAGGCAGCCAAGCTCTACCGCGAGGCCCTCAAAGCCGA
CCCCAAGGCCACCGTGCTCTACCTGAACCGGTGCCAGTGCTTCCTCAAGCTCGGGGATTTTCGGC
GCGCACTCAACGACGCGGTGGCGGCGGTCAACACCTTTGACGACCAGACCACCCTGGCACTCAAA
CTGAAGGTGTACTACCGCAAGGGGATGGCGTTTGTGGGGTTGGGCGAGCGAAAACGCGCCCACTA
CTGTTTTGAAAAGGCTGTGGGCTTCGACTCGGGCAACCGCGACGCCCGGGCCCAGATGGCCCAGT
TGGGTAATTTAGCCGCGGAGGTGCCCGTGGAGGTGGTGGGCGAGC
Found at i:68437 original size:15 final size:15
Alignment explanation
Indices: 68417--68518 Score: 129
Period size: 15 Copynumber: 7.0 Consensus size: 15
68407 ATAGAGTCAT
*
68417 GAAAGCAGAACAAAC
1 GAAAGCAGAACAACC
**
68432 GAAAGCAGAACGGCC
1 GAAAGCAGAACAACC
68447 GAAAGCAG---AACC
1 GAAAGCAGAACAACC
* *
68459 GAAAGCAGAACATCT
1 GAAAGCAGAACAACC
*
68474 GAAAGCAGAACAATC
1 GAAAGCAGAACAACC
68489 GAAAGCAGAACAACC
1 GAAAGCAGAACAACC
68504 GAAAGCAGAACAACC
1 GAAAGCAGAACAACC
68519 TTGGGTGTAA
Statistics
Matches: 73, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
12 10 0.14
15 63 0.86
ACGTcount: A:0.51, C:0.24, G:0.23, T:0.03
Consensus pattern (15 bp):
GAAAGCAGAACAACC
Left flanking sequence: Indices 67917 -- 68416
CTCGCCGAGGCCCTGGTGCGAGCCCGGCCCCTCGTTCCCGGCTCAGGCACCGCCAGTGTCACCAG
CACCCCCCACTCGCTGTCGCCCGTGCTCAATCCCCAGCGGGCCCACCACAAACAGGTTTTGCTCC
GGTTCTTGGACAAGGTGCTTGAGTTCTCCTACCCGACCCGCAACTCAGCTCCGCCTCGGTACTAC
GAGCTTGTGGAGAATGCCCGTAGTGCGTTCAATCTAGCATCTAAAACGATATTGGGTCTCCGAGA
CCTCCACACCCACCAGACGATACAGACCGACGGCGACTTGGAACGCATTTTCACCCGCCAGGACG
CTATCGAGCTCGAGGTCTTCACCCAGGGGGCGAAAGCGATCCCGATATACGAGTTGACACTGACA
GTGACGAGTAGAGGTGGCACCAATAGCCCCCGCTACCTTCTCCCACCAATAAAACCCCCCATAGA
CAGCTTCCAGCCATTGCTATAGGGATTAATAGTTAATAGAGTCAT
Right flanking sequence: Indices 68519 -- 69018
TTGGGTGTAACTAGATTGTTGCGACCGCGGTGAATGACGGCTTCCGAAGTAAGGATAGAGGTATC
TCGAGCCGACTTGCTCGACATGGGGAGACATTCTGCAACCACTTCAGGACGCAGAGCAAGAACTC
TTGGCCCCTAGAAGGCAGTGAAACGCGGATCTCCCAGGACTTACTTTGCAACCAGCCTGTAGTCA
CGCGGTCTGTGCCTGAACAGGGTAGTGGTACGAGGTATCGAAGTTCCGCCGTGTGGGCCAATAAG
CAGCTCGACTTCGTCAATTAGATTCGATCGTACAGCAAGCGGAAGATCCCCTAAAGAAAAATCAG
CAGAGATAGGGGAAATAATTTTGCCATGGTATAAAAAATACGGAGACCAGCTGGTATTGCCGAGC
TCGTCTAATGTCTGGTGACTCCGGAGAAACGGCCATGGTGGCTCGTTCAGTGGCTAGTGGCAGAG
GATGTCACTCGGTAGCAAGTCGTCATGGGCTCTCCTTCTGGCGGG
Found at i:69147 original size:15 final size:15
Alignment explanation
Indices: 69127--69157 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
69117 ACCCCATATT
69127 CTAGGAGCCGAGGAC
1 CTAGGAGCCGAGGAC
69142 CTAGGAGCCGAGGAC
1 CTAGGAGCCGAGGAC
69157 C
1 C
69158 GAGAAATGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.29, G:0.39, T:0.06
Consensus pattern (15 bp):
CTAGGAGCCGAGGAC
Left flanking sequence: Indices 68627 -- 69126
TCAGGACGCAGAGCAAGAACTCTTGGCCCCTAGAAGGCAGTGAAACGCGGATCTCCCAGGACTTA
CTTTGCAACCAGCCTGTAGTCACGCGGTCTGTGCCTGAACAGGGTAGTGGTACGAGGTATCGAAG
TTCCGCCGTGTGGGCCAATAAGCAGCTCGACTTCGTCAATTAGATTCGATCGTACAGCAAGCGGA
AGATCCCCTAAAGAAAAATCAGCAGAGATAGGGGAAATAATTTTGCCATGGTATAAAAAATACGG
AGACCAGCTGGTATTGCCGAGCTCGTCTAATGTCTGGTGACTCCGGAGAAACGGCCATGGTGGCT
CGTTCAGTGGCTAGTGGCAGAGGATGTCACTCGGTAGCAAGTCGTCATGGGCTCTCCTTCTGGCG
GGTGGGACATTGAGGGGGTGTCCACGCATTGGTATGGTAAGGGACTCCGTGAAGGTGAATATTCA
AGCAACTATCAGGTTGGCAGGCAACTTAGGTTAACACCCCATATT
Right flanking sequence: Indices 69158 -- 69657
GAGAAATGGCTATCAACATTTTTATAACCGACTCGGCTTTCTTTGCACAAAAATAATGGGAGTAG
CGAAGAATCTTCCAGTAGAAATTTCAAAAGCCATTTTCACAAGGTTCCAGTGCTTTCGCTCCGCC
TGGCCATTTTGCTTTTCCTCGATGACAACATTTCCACCAGCGTTTCCTATAGCAGAAATTTCACG
TTTCCTTTCTCCCGCCTGTGGTCCACAAAGAAACCAAACAACTTCTTTTACGCAAAAGCAATGGG
TTGAAAAGGGGATTTCCGTAAGGTTGGGCCCGTCTAAATGACACCCTTTGTCTTCGTCGTGTCGC
CAGCTGCTGTCCCTCGACACGAGATCTCCTTCGTAAACGGTCTCCAGGGACCAACCTTAAAGCGT
ATTTTCAGGAACCCGCCCAAATCACGTACCATGATGTAACAAACCGTGAATGGTACTTGCATGGA
ACAACCAAACATGTACGGTGGGTTCGCCGTCGCGTCGTCGTAGCC
Found at i:73298 original size:15 final size:15
Alignment explanation
Indices: 73267--73309 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
73257 ATCCCCTCTA
73267 CTCGCCT-CTCCTCCC
1 CTCGCCTCCTCCT-CC
*
73282 CTCGCCTCCACCTCC
1 CTCGCCTCCTCCTCC
73297 CTC-CCTCCTCCTC
1 CTCGCCTCCTCCTC
73310 ATACCCCGTC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 9 0.36
15 12 0.48
16 4 0.16
ACGTcount: A:0.02, C:0.67, G:0.05, T:0.26
Consensus pattern (15 bp):
CTCGCCTCCTCCTCC
Left flanking sequence: Indices 72767 -- 73266
AAGGGGTGGAAAGACAGCCGTGGATGAGACCTGAAATGAATTTCAGTGCCTGAACCGTAGCGAGT
TTTCAATACAAGCCGGCAGATAGAGCGGCTTAGTCACGGGTTTGTAGCAAAGAAGACTGTGTAAT
TTCACCGTGGGTTGTGGCTGGCCAGCCATTCTGGTGGAGCCTTGCGTTCTTTTCTGGACCTATCT
CAAGGTTCATACGGAGACAAGCCCCATCATTCGTGGGTCCCTCTCGCGGTAGCCCATGTCCGTGC
CGTATCTACATAATGACGACAACTGCTCTACCCCACAGACGGTGTTTTTATATTTCTACTTTCCA
CAATGGAACCTAGCGTCCCATCATGAACCATTCCATCTAACCCCCTACTCGTTGTCGCACTCCCT
TCTGCAATTGCACCTCAGTCCTTCCTCCTCGGTCCACCCTCCAACCTCCTCCACCCCCCACCACC
GTCGCAGACCTCACACCCGCCCCCCACCACCAACAATCCCCTCTA
Right flanking sequence: Indices 73310 -- 73809
ATACCCCGTCTCACGTGACTTCAAATCCCATCGTATACTGGCTCCATACAGTACTCCGAGTCACC
TCCCGATCCACAATGCTTTTGGGTCCCAGCCAACGATTCCTCGGACTGCGAGGGTGGAGCCGGTT
GCGGGGCTCCCCCCGAACCGTAAGAACCCCCGTCCGCAGCGTCAAAACCTCCACGGTCGACTGGA
AGCCGGTGAGGGCGGTCGAAGGTAATTTGACCACCCTCGAGCACCAGGCGAAAACCCCGTGGTTG
CGGCGGTTCTTCCTCGGGCTTATGATCGCCATGCCCGTGATCTCATTTACTTTGGGCTGCTGGCA
GGTGCGGCGGCTCCGGTGGAAGGCTGACCTTATTGCCAAGTGTGAAAACAACCTTGCAGCAGAGA
CCATCCCCGAGTTGCCGGCCCAGTTGGACCCTGACGCGATTGCTGAGTTTGAATACCGCCGGTTC
CGGTGCAAGGGCCACTTTGACTACTCCCAGGAGATGTTTTTGGGG
Found at i:81277 original size:13 final size:13
Alignment explanation
Indices: 81259--81287 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
81249 GAACTGAGGA
81259 TTTCTGTTGAAAT
1 TTTCTGTTGAAAT
81272 TTTCTGTTGAAAT
1 TTTCTGTTGAAAT
81285 TTT
1 TTT
81288 TCATATTGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.21, C:0.07, G:0.14, T:0.59
Consensus pattern (13 bp):
TTTCTGTTGAAAT
Left flanking sequence: Indices 80759 -- 81258
AGGCTTTGACCGGTGAGTCCGTCACTGAGTGCACCTACTTGGACTTGTCTTCGGACATCAAGGGT
GCCGCTGAGGCTAAGAAGATTGTCAACGACCTTGACTTCTTCTCCTTGCCCGTTAAGTTGGGCAA
GAACGGTATCGAGGAGGTTCAGTACGACGTGTTGAACAAGACCACCGACGCCGAGAAGAAGTTGA
TCGAGGTTGCCGTTGGCCAGTTGAAGGGTAACATCGAGAAGGGTGTTGCTTTTGTTAAGAAGTAA
GTTACGAAATAAACGACATAGATGAACGGCTGTAGAGCGTTGAAGATTCAGCGTCAACGTCGCAA
TTTTGATCCGAAATTCCAGCGTCATAGTACATTACCGAGCGTCCGAGCACGAAGCATGTGACTAT
AGGTAGCAAGTCTGGAGCCGAAGAGAATTCGAAGATGGGACACTTCAGGCGTTACAAAACCGAAC
GGGCATTTTGTAAGTGTTAGGTGGAAGGCGATTTTGAACTGAGGA
Right flanking sequence: Indices 81288 -- 81787
TCATATTGTTGCAAACTTCCCAAAAAGTACAATTCACCCAAAACACCCTAGTTCGAATCTCCTTA
ACTCCAGGCTTTATTCATTCATTCACTCTACTACCATATTTCTAACTATTCTCTGGATCTACTCC
CCTCGAAACGCTCAACCGTTCTCTCGAACTGGTCCCCCATCAATGCATCCATAGCTGCCACCCCA
GCTGACGCCGTCACAGGCAGATTCAACACCAACAACACTAACCACTGGCACAACCGGTGGAGCTC
CTGGGGCTCCTTGGCCACCACACCCAACCAGTTCACGGGACACTGTAGGTGGGGGCGAGCGGTCG
CAAGCGCTAACAGCAGTTGGTGGATCGCTTGGATACAACGGACGTGGGCCCACGGAACGACGAGG
GCACCCCCAGAGGTTTCAACAGGCAGTGCCCCACGGGACTGCACCTCTGGGGTGAATTGCTGCAA
ATAAGGCTCAGGGACAATTGTAGCAATGGCCTGATAGAGCGTGTA
Found at i:86847 original size:15 final size:15
Alignment explanation
Indices: 86827--86875 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
86817 GGCTCTGTCC
*
86827 CTGGCTGCTTCTTCT
1 CTGGCTGCCTCTTCT
* * *
86842 CTGGCTGCCACCTCG
1 CTGGCTGCCTCTTCT
*
86857 CTGGCTGCGTCTTCT
1 CTGGCTGCCTCTTCT
86872 CTGG
1 CTGG
86876 AGCCCGCCAG
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.02, C:0.37, G:0.27, T:0.35
Consensus pattern (15 bp):
CTGGCTGCCTCTTCT
Left flanking sequence: Indices 86327 -- 86826
AGTACTCGCAGCAGACCAAGATCACCGGTTCTGGTTGCGTGATCATCCGCAAGGACGCTTTTGTC
CACTTGGCCAACCCCCTCTACGCCATTGAGGAGTCCCAGACCTTTGTGCTTGAGGACGAGTCGTC
GCAGATCTCGGTTGCCGCTGCCCACGGTGACCAGGCTTTCACCGTGGCTGGCTACGGTGGTGGCA
ACGTCATTGGTACTGACTTGACCATCACCAACTTTGAGTACAACGACGTCACCGGTGTGCTCAAG
GTGTGGAACGGTGCTGTCACCAACGAGTTCAACATCGGTACTGGCTACGTCTACGAGGACTTCTG
GCTTGACACCACCAACCAACCCCTGAAGATCACTAACAACGGTTTGAGATACGTTGGCCCTGTGC
CCGATGGTGCTAACAAGAGCGATGGTTGCATGCCTTGTGAGCCCATCCCCGACTTCCCTACTCCT
CTGGAGCTGCTGCTGGCTGTGTCGTCGCTGACCATGGCTCTGTCC
Right flanking sequence: Indices 86876 -- 87375
AGCCCGCCAGCTCTTCGGAGGCCGCCTCTCTGGCCACCTCTGAGGCTGCTTCCTCTTCTGAGGCT
GCTTCGTCGTCGCAGGCTGCTTCTTCTTCCGAGGCTGCTTCCTCCGAGGCTGCCTCTACCTCGAC
TGTGCCTCCCGCTGCCTCGGTTCCCGCTTCGTCGGCTGCTGCGTCTTCTGCTGCTGAGTCGTCTG
CTGCTGAGTCTTCCGCTGCTGAGTCGTCTGCCGCTGAGTCTTCCGCTGCTGCTTCTTCCGCCGCC
GAGTCGTCTGCTGCTGCTTCTTCTGCCGCCGAGTCGTCTGCTGCCGAATCTTCTGCCGTTGCTTC
TTCCGGTGCTGAGTCTTCTGCTGCTGAGTCGTCGGCTCCTGGTGCTACTGACTCTTCTGAGGTGC
CCACTGTGACTGCTACTGAGTGCCCTGACTGCACTGAGTACACCACTACTTGGACCACCACTGGC
ACTGACGACAAGCCCTCGACCGACTCTGGTGTTGTCATCATCACC
Found at i:86937 original size:18 final size:18
Alignment explanation
Indices: 86914--86984 Score: 90
Period size: 18 Copynumber: 3.9 Consensus size: 18
86904 TCTGGCCACC
86914 TCTGAGGCTGCTTCCTCT
1 TCTGAGGCTGCTTCCTCT
* *
86932 TCTGAGGCTGCTTCGTCG
1 TCTGAGGCTGCTTCCTCT
*
86950 TC-GCAGGCTGCTTCTTCT
1 TCTG-AGGCTGCTTCCTCT
*
86968 TCCGAGGCTGCTTCCTC
1 TCTGAGGCTGCTTCCTC
86985 CGAGGCTGCC
Statistics
Matches: 46, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
17 1 0.02
18 44 0.96
19 1 0.02
ACGTcount: A:0.06, C:0.34, G:0.25, T:0.35
Consensus pattern (18 bp):
TCTGAGGCTGCTTCCTCT
Left flanking sequence: Indices 86414 -- 86913
CCATTGAGGAGTCCCAGACCTTTGTGCTTGAGGACGAGTCGTCGCAGATCTCGGTTGCCGCTGCC
CACGGTGACCAGGCTTTCACCGTGGCTGGCTACGGTGGTGGCAACGTCATTGGTACTGACTTGAC
CATCACCAACTTTGAGTACAACGACGTCACCGGTGTGCTCAAGGTGTGGAACGGTGCTGTCACCA
ACGAGTTCAACATCGGTACTGGCTACGTCTACGAGGACTTCTGGCTTGACACCACCAACCAACCC
CTGAAGATCACTAACAACGGTTTGAGATACGTTGGCCCTGTGCCCGATGGTGCTAACAAGAGCGA
TGGTTGCATGCCTTGTGAGCCCATCCCCGACTTCCCTACTCCTCTGGAGCTGCTGCTGGCTGTGT
CGTCGCTGACCATGGCTCTGTCCCTGGCTGCTTCTTCTCTGGCTGCCACCTCGCTGGCTGCGTCT
TCTCTGGAGCCCGCCAGCTCTTCGGAGGCCGCCTCTCTGGCCACC
Right flanking sequence: Indices 86985 -- 87484
CGAGGCTGCCTCTACCTCGACTGTGCCTCCCGCTGCCTCGGTTCCCGCTTCGTCGGCTGCTGCGT
CTTCTGCTGCTGAGTCGTCTGCTGCTGAGTCTTCCGCTGCTGAGTCGTCTGCCGCTGAGTCTTCC
GCTGCTGCTTCTTCCGCCGCCGAGTCGTCTGCTGCTGCTTCTTCTGCCGCCGAGTCGTCTGCTGC
CGAATCTTCTGCCGTTGCTTCTTCCGGTGCTGAGTCTTCTGCTGCTGAGTCGTCGGCTCCTGGTG
CTACTGACTCTTCTGAGGTGCCCACTGTGACTGCTACTGAGTGCCCTGACTGCACTGAGTACACC
ACTACTTGGACCACCACTGGCACTGACGACAAGCCCTCGACCGACTCTGGTGTTGTCATCATCAC
CACCACTGACGGTTCGTTGACCACCACCACCTCGACCTTCCCCCACGAGTCGACCACTGACACCG
AGTGCCCTGACTGCACCGAGTACACCACTACTTGGACCACCACTG
Found at i:86986 original size:15 final size:15
Alignment explanation
Indices: 86912--86993 Score: 65
Period size: 18 Copynumber: 4.9 Consensus size: 15
86902 TCTCTGGCCA
*
86912 CCTCTGAGGCTGCTT
1 CCTCCGAGGCTGCTT
86927 CCTCTTCTGAGGCTGCTT
1 CCTC--C-GAGGCTGCTT
*
86945 CGTCGTCGCAGGCTGCTT
1 CCTC--CG-AGGCTGCTT
86963 CTTCTTCCGAGGCTGCTT
1 C--C-TCCGAGGCTGCTT
86981 CCTCCGAGGCTGC
1 CCTCCGAGGCTGC
86994 CTCTACCTCG
Statistics
Matches: 56, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
15 15 0.27
16 1 0.02
17 1 0.02
18 35 0.62
19 2 0.04
21 2 0.04
ACGTcount: A:0.06, C:0.35, G:0.27, T:0.32
Consensus pattern (15 bp):
CCTCCGAGGCTGCTT
Left flanking sequence: Indices 86412 -- 86911
CGCCATTGAGGAGTCCCAGACCTTTGTGCTTGAGGACGAGTCGTCGCAGATCTCGGTTGCCGCTG
CCCACGGTGACCAGGCTTTCACCGTGGCTGGCTACGGTGGTGGCAACGTCATTGGTACTGACTTG
ACCATCACCAACTTTGAGTACAACGACGTCACCGGTGTGCTCAAGGTGTGGAACGGTGCTGTCAC
CAACGAGTTCAACATCGGTACTGGCTACGTCTACGAGGACTTCTGGCTTGACACCACCAACCAAC
CCCTGAAGATCACTAACAACGGTTTGAGATACGTTGGCCCTGTGCCCGATGGTGCTAACAAGAGC
GATGGTTGCATGCCTTGTGAGCCCATCCCCGACTTCCCTACTCCTCTGGAGCTGCTGCTGGCTGT
GTCGTCGCTGACCATGGCTCTGTCCCTGGCTGCTTCTTCTCTGGCTGCCACCTCGCTGGCTGCGT
CTTCTCTGGAGCCCGCCAGCTCTTCGGAGGCCGCCTCTCTGGCCA
Right flanking sequence: Indices 86994 -- 87493
CTCTACCTCGACTGTGCCTCCCGCTGCCTCGGTTCCCGCTTCGTCGGCTGCTGCGTCTTCTGCTG
CTGAGTCGTCTGCTGCTGAGTCTTCCGCTGCTGAGTCGTCTGCCGCTGAGTCTTCCGCTGCTGCT
TCTTCCGCCGCCGAGTCGTCTGCTGCTGCTTCTTCTGCCGCCGAGTCGTCTGCTGCCGAATCTTC
TGCCGTTGCTTCTTCCGGTGCTGAGTCTTCTGCTGCTGAGTCGTCGGCTCCTGGTGCTACTGACT
CTTCTGAGGTGCCCACTGTGACTGCTACTGAGTGCCCTGACTGCACTGAGTACACCACTACTTGG
ACCACCACTGGCACTGACGACAAGCCCTCGACCGACTCTGGTGTTGTCATCATCACCACCACTGA
CGGTTCGTTGACCACCACCACCTCGACCTTCCCCCACGAGTCGACCACTGACACCGAGTGCCCTG
ACTGCACCGAGTACACCACTACTTGGACCACCACTGGCACCGATG
Found at i:87058 original size:15 final size:15
Alignment explanation
Indices: 87040--87230 Score: 157
Period size: 15 Copynumber: 12.7 Consensus size: 15
87030 CGCTTCGTCG
*
87040 GCTGCTGCGTCTTCT
1 GCTGCTGAGTCTTCT
*
87055 GCTGCTGAGTCGTCT
1 GCTGCTGAGTCTTCT
*
87070 GCTGCTGAGTCTTCC
1 GCTGCTGAGTCTTCT
*
87085 GCTGCTGAGTCGTCT
1 GCTGCTGAGTCTTCT
* *
87100 GCCGCTGAGTCTTCC
1 GCTGCTGAGTCTTCT
** *
87115 GCTGCTGCTTCTTCC
1 GCTGCTGAGTCTTCT
* * *
87130 GCCGCCGAGTCGTCT
1 GCTGCTGAGTCTTCT
**
87145 GCTGCTGCTTCTTCT
1 GCTGCTGAGTCTTCT
* * *
87160 GCCGCCGAGTCGTCT
1 GCTGCTGAGTCTTCT
* *
87175 GCTGCCGAATCTTCT
1 GCTGCTGAGTCTTCT
* * ** *
87190 GCCGTTGCTTCTTCC
1 GCTGCTGAGTCTTCT
*
87205 GGTGCTGAGTCTTCT
1 GCTGCTGAGTCTTCT
87220 GCTGCTGAGTC
1 GCTGCTGAGTC
87231 GTCGGCTCCT
Statistics
Matches: 132, Mismatches: 44, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
15 132 1.00
ACGTcount: A:0.05, C:0.34, G:0.28, T:0.34
Consensus pattern (15 bp):
GCTGCTGAGTCTTCT
Left flanking sequence: Indices 86540 -- 87039
TGACCATCACCAACTTTGAGTACAACGACGTCACCGGTGTGCTCAAGGTGTGGAACGGTGCTGTC
ACCAACGAGTTCAACATCGGTACTGGCTACGTCTACGAGGACTTCTGGCTTGACACCACCAACCA
ACCCCTGAAGATCACTAACAACGGTTTGAGATACGTTGGCCCTGTGCCCGATGGTGCTAACAAGA
GCGATGGTTGCATGCCTTGTGAGCCCATCCCCGACTTCCCTACTCCTCTGGAGCTGCTGCTGGCT
GTGTCGTCGCTGACCATGGCTCTGTCCCTGGCTGCTTCTTCTCTGGCTGCCACCTCGCTGGCTGC
GTCTTCTCTGGAGCCCGCCAGCTCTTCGGAGGCCGCCTCTCTGGCCACCTCTGAGGCTGCTTCCT
CTTCTGAGGCTGCTTCGTCGTCGCAGGCTGCTTCTTCTTCCGAGGCTGCTTCCTCCGAGGCTGCC
TCTACCTCGACTGTGCCTCCCGCTGCCTCGGTTCCCGCTTCGTCG
Right flanking sequence: Indices 87231 -- 87730
GTCGGCTCCTGGTGCTACTGACTCTTCTGAGGTGCCCACTGTGACTGCTACTGAGTGCCCTGACT
GCACTGAGTACACCACTACTTGGACCACCACTGGCACTGACGACAAGCCCTCGACCGACTCTGGT
GTTGTCATCATCACCACCACTGACGGTTCGTTGACCACCACCACCTCGACCTTCCCCCACGAGTC
GACCACTGACACCGAGTGCCCTGACTGCACCGAGTACACCACTACTTGGACCACCACTGGCACCG
ATGACAAGCCCTCGACCGACTCTGGTGTCGTTATTGTCACCACCACTGACGGTTCGTTGACCACC
ACCACCTCGACCTTCCCCCACGAGTCGACCACTGACACCGAGTGCCCCGACTGCACCGAGTACAC
CACTACTTGGACCACCACTGGCACCGATGACAAGCCCTCGACCGACTCTGGTGTTGTGATCATCA
CCACCACTGACGGCTCGTTGACCACCACCACCTCGACCTTCCCCC
Found at i:87567 original size:156 final size:156
Alignment explanation
Indices: 87283--87893 Score: 988
Period size: 156 Copynumber: 3.9 Consensus size: 156
87273 GACTGCTACT
* * *
87283 GAGTGCCCTGACTGCACTGAGTACACCACTACTTGGACCACCACTGGCACTGACGACAAGCCCTC
1 GAGTGCCCTGACTGCACCGAGTACACCACTACTTGGACCACCACTGGCACCGATGACAAGCCCTC
* *
87348 GACCGACTCTGGTGTTGTCATCATCACCACCACTGACGGTTCGTTGACCACCACCACCTCGACCT
66 GACCGACTCTGGTGTCGTTATCATCACCACCACTGACGGTTCGTTGACCACCACCACCTCGACCT
87413 TCCCCCACGAGTCGACCACTGACACC
131 TCCCCCACGAGTCGACCACTGACACC
87439 GAGTGCCCTGACTGCACCGAGTACACCACTACTTGGACCACCACTGGCACCGATGACAAGCCCTC
1 GAGTGCCCTGACTGCACCGAGTACACCACTACTTGGACCACCACTGGCACCGATGACAAGCCCTC
**
87504 GACCGACTCTGGTGTCGTTATTGTCACCACCACTGACGGTTCGTTGACCACCACCACCTCGACCT
66 GACCGACTCTGGTGTCGTTATCATCACCACCACTGACGGTTCGTTGACCACCACCACCTCGACCT
87569 TCCCCCACGAGTCGACCACTGACACC
131 TCCCCCACGAGTCGACCACTGACACC
*
87595 GAGTGCCCCGACTGCACCGAGTACACCACTACTTGGACCACCACTGGCACCGATGACAAGCCCTC
1 GAGTGCCCTGACTGCACCGAGTACACCACTACTTGGACCACCACTGGCACCGATGACAAGCCCTC
* * *
87660 GACCGACTCTGGTGTTGTGATCATCACCACCACTGACGGCTCGTTGACCACCACCACCTCGACCT
66 GACCGACTCTGGTGTCGTTATCATCACCACCACTGACGGTTCGTTGACCACCACCACCTCGACCT
* *
87725 TCCCCCACGAGTCGACCACTGCCACT
131 TCCCCCACGAGTCGACCACTGACACC
* * * * *
87751 GACTGCCCTGAGTGCACCGAGTACACCACCACTTGGACTACCACTGGCACCGATGACAAGCCTTC
1 GAGTGCCCTGACTGCACCGAGTACACCACTACTTGGACCACCACTGGCACCGATGACAAGCCCTC
* * ** * * * *
87816 CACTGACTCTGGTGTCGTTATTGTCACCACTACCGACGGTTCGTTGACCACCACCACTTCCACCT
66 GACCGACTCTGGTGTCGTTATCATCACCACCACTGACGGTTCGTTGACCACCACCACCTCGACCT
87881 TCCCCCACGAGTC
131 TCCCCCACGAGTC
87894 CGAGTACACC
Statistics
Matches: 423, Mismatches: 32, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
156 423 1.00
ACGTcount: A:0.22, C:0.40, G:0.19, T:0.19
Consensus pattern (156 bp):
GAGTGCCCTGACTGCACCGAGTACACCACTACTTGGACCACCACTGGCACCGATGACAAGCCCTC
GACCGACTCTGGTGTCGTTATCATCACCACCACTGACGGTTCGTTGACCACCACCACCTCGACCT
TCCCCCACGAGTCGACCACTGACACC
Left flanking sequence: Indices 86783 -- 87282
TGGAGCTGCTGCTGGCTGTGTCGTCGCTGACCATGGCTCTGTCCCTGGCTGCTTCTTCTCTGGCT
GCCACCTCGCTGGCTGCGTCTTCTCTGGAGCCCGCCAGCTCTTCGGAGGCCGCCTCTCTGGCCAC
CTCTGAGGCTGCTTCCTCTTCTGAGGCTGCTTCGTCGTCGCAGGCTGCTTCTTCTTCCGAGGCTG
CTTCCTCCGAGGCTGCCTCTACCTCGACTGTGCCTCCCGCTGCCTCGGTTCCCGCTTCGTCGGCT
GCTGCGTCTTCTGCTGCTGAGTCGTCTGCTGCTGAGTCTTCCGCTGCTGAGTCGTCTGCCGCTGA
GTCTTCCGCTGCTGCTTCTTCCGCCGCCGAGTCGTCTGCTGCTGCTTCTTCTGCCGCCGAGTCGT
CTGCTGCCGAATCTTCTGCCGTTGCTTCTTCCGGTGCTGAGTCTTCTGCTGCTGAGTCGTCGGCT
CCTGGTGCTACTGACTCTTCTGAGGTGCCCACTGTGACTGCTACT
Right flanking sequence: Indices 87894 -- 88393
CGAGTACACCACCACTTGGACCACCACTGGTACTGACGGCAAGCCCACTACTGAGTCTGGTGTGG
TTGACATCACCACCAACCCCGAGGGCGAGTTGACCACCTCTACCTCCACCTTCCCCTCCGAGCCC
CTGTCTACTGAGTACACCACTACCTGGACCTCTACTGACGGCAACGGCAACCCCGTGACCGAGTC
CGGTGTTGTGGGTGTCTCTACTGACTCTGAGGGTGACTGGACCACCGGTACCCTGACCTTCCCTC
ACGCTACCACCGACGACTCTGAGACCCCCTCGTGGGTCACTGTGTACGTCACCCCTACTGCTGGC
ACTGGTAACGGTGACGGTAACGGCGACGGCAACGGTAACGGTGACGGTAACGGTGACGGTTCTGA
CAACGGTTCTGACAACGGTGACGGCTCCGACAACGGCAACGGCAACGGTGAGGGCTCCGACAACG
GTGAGGGCTCTGGCAACGGCGCTGACAACGGTGATGGCTCCGACT
Found at i:88235 original size:6 final size:6
Alignment explanation
Indices: 88222--88278 Score: 60
Period size: 6 Copynumber: 9.5 Consensus size: 6
88212 TGCTGGCACT
* ** * *
88222 GGTAAC GGTGAC GGTAAC GGCGAC GGCAAC GGTAAC GGTGAC GGTAAC
1 GGTAAC GGTAAC GGTAAC GGTAAC GGTAAC GGTAAC GGTAAC GGTAAC
*
88270 GGTGAC GGT
1 GGTAAC GGT
88279 TCTGACAACG
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
6 42 1.00
ACGTcount: A:0.25, C:0.19, G:0.42, T:0.14
Consensus pattern (6 bp):
GGTAAC
Left flanking sequence: Indices 87722 -- 88221
CCTTCCCCCACGAGTCGACCACTGCCACTGACTGCCCTGAGTGCACCGAGTACACCACCACTTGG
ACTACCACTGGCACCGATGACAAGCCTTCCACTGACTCTGGTGTCGTTATTGTCACCACTACCGA
CGGTTCGTTGACCACCACCACTTCCACCTTCCCCCACGAGTCCGAGTACACCACCACTTGGACCA
CCACTGGTACTGACGGCAAGCCCACTACTGAGTCTGGTGTGGTTGACATCACCACCAACCCCGAG
GGCGAGTTGACCACCTCTACCTCCACCTTCCCCTCCGAGCCCCTGTCTACTGAGTACACCACTAC
CTGGACCTCTACTGACGGCAACGGCAACCCCGTGACCGAGTCCGGTGTTGTGGGTGTCTCTACTG
ACTCTGAGGGTGACTGGACCACCGGTACCCTGACCTTCCCTCACGCTACCACCGACGACTCTGAG
ACCCCCTCGTGGGTCACTGTGTACGTCACCCCTACTGCTGGCACT
Right flanking sequence: Indices 88279 -- 88778
TCTGACAACGGTTCTGACAACGGTGACGGCTCCGACAACGGCAACGGCAACGGTGAGGGCTCCGA
CAACGGTGAGGGCTCTGGCAACGGCGCTGACAACGGTGATGGCTCCGACTCTGGTGCTGACAACG
GTGACGGCTCCGACTCTGGTGCTGACAACGGTTCCGACAACGGTGACGGGTCCAACAACGACAAC
GGCGACGGCTCTGACTCTGACTCTGGTGCCAACTCTGGCTCCGGTGCTGGTGAGTCCGGTGAGGG
CTCTGGTGCCGACTCTGGTGCTGATGGCTCTGGTGCCGACTCTGGTGCTGATGGCTCTGGTGCCG
ACTCTGGTGCTGACACCGGCTCCGACTCTACTGACAACTCCGGTGCCGACTCTGGTGCCGACGCT
GTCCCCCCTATCGTTTCCACTGGTGGCGCTGGTGCCACTAAGCCCTCGATGATGGTGGCTGCCGC
CGTCGTTGCCCTTTTGGCTCTCTAATACCCTTTCTAGCCCACGGG
Found at i:88278 original size:18 final size:18
Alignment explanation
Indices: 88226--88278 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
88216 GGCACTGGTA
* *
88226 ACGGTGACGGTAACGGCG
1 ACGGTAACGGTAACGGTG
*
88244 ACGGCAACGGTAACGGTG
1 ACGGTAACGGTAACGGTG
*
88262 ACGGTAACGGTGACGGT
1 ACGGTAACGGTAACGGT
88279 TCTGACAACG
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.25, C:0.21, G:0.42, T:0.13
Consensus pattern (18 bp):
ACGGTAACGGTAACGGTG
Left flanking sequence: Indices 87726 -- 88225
CCCCCACGAGTCGACCACTGCCACTGACTGCCCTGAGTGCACCGAGTACACCACCACTTGGACTA
CCACTGGCACCGATGACAAGCCTTCCACTGACTCTGGTGTCGTTATTGTCACCACTACCGACGGT
TCGTTGACCACCACCACTTCCACCTTCCCCCACGAGTCCGAGTACACCACCACTTGGACCACCAC
TGGTACTGACGGCAAGCCCACTACTGAGTCTGGTGTGGTTGACATCACCACCAACCCCGAGGGCG
AGTTGACCACCTCTACCTCCACCTTCCCCTCCGAGCCCCTGTCTACTGAGTACACCACTACCTGG
ACCTCTACTGACGGCAACGGCAACCCCGTGACCGAGTCCGGTGTTGTGGGTGTCTCTACTGACTC
TGAGGGTGACTGGACCACCGGTACCCTGACCTTCCCTCACGCTACCACCGACGACTCTGAGACCC
CCTCGTGGGTCACTGTGTACGTCACCCCTACTGCTGGCACTGGTA
Right flanking sequence: Indices 88279 -- 88778
TCTGACAACGGTTCTGACAACGGTGACGGCTCCGACAACGGCAACGGCAACGGTGAGGGCTCCGA
CAACGGTGAGGGCTCTGGCAACGGCGCTGACAACGGTGATGGCTCCGACTCTGGTGCTGACAACG
GTGACGGCTCCGACTCTGGTGCTGACAACGGTTCCGACAACGGTGACGGGTCCAACAACGACAAC
GGCGACGGCTCTGACTCTGACTCTGGTGCCAACTCTGGCTCCGGTGCTGGTGAGTCCGGTGAGGG
CTCTGGTGCCGACTCTGGTGCTGATGGCTCTGGTGCCGACTCTGGTGCTGATGGCTCTGGTGCCG
ACTCTGGTGCTGACACCGGCTCCGACTCTACTGACAACTCCGGTGCCGACTCTGGTGCCGACGCT
GTCCCCCCTATCGTTTCCACTGGTGGCGCTGGTGCCACTAAGCCCTCGATGATGGTGGCTGCCGC
CGTCGTTGCCCTTTTGGCTCTCTAATACCCTTTCTAGCCCACGGG
Found at i:88289 original size:12 final size:12
Alignment explanation
Indices: 88274--88302 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
88264 GGTAACGGTG
88274 ACGGTTCTGACA
1 ACGGTTCTGACA
88286 ACGGTTCTGACA
1 ACGGTTCTGACA
88298 ACGGT
1 ACGGT
88303 GACGGCTCCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (12 bp):
ACGGTTCTGACA
Left flanking sequence: Indices 87774 -- 88273
CACCACCACTTGGACTACCACTGGCACCGATGACAAGCCTTCCACTGACTCTGGTGTCGTTATTG
TCACCACTACCGACGGTTCGTTGACCACCACCACTTCCACCTTCCCCCACGAGTCCGAGTACACC
ACCACTTGGACCACCACTGGTACTGACGGCAAGCCCACTACTGAGTCTGGTGTGGTTGACATCAC
CACCAACCCCGAGGGCGAGTTGACCACCTCTACCTCCACCTTCCCCTCCGAGCCCCTGTCTACTG
AGTACACCACTACCTGGACCTCTACTGACGGCAACGGCAACCCCGTGACCGAGTCCGGTGTTGTG
GGTGTCTCTACTGACTCTGAGGGTGACTGGACCACCGGTACCCTGACCTTCCCTCACGCTACCAC
CGACGACTCTGAGACCCCCTCGTGGGTCACTGTGTACGTCACCCCTACTGCTGGCACTGGTAACG
GTGACGGTAACGGCGACGGCAACGGTAACGGTGACGGTAACGGTG
Right flanking sequence: Indices 88303 -- 88802
GACGGCTCCGACAACGGCAACGGCAACGGTGAGGGCTCCGACAACGGTGAGGGCTCTGGCAACGG
CGCTGACAACGGTGATGGCTCCGACTCTGGTGCTGACAACGGTGACGGCTCCGACTCTGGTGCTG
ACAACGGTTCCGACAACGGTGACGGGTCCAACAACGACAACGGCGACGGCTCTGACTCTGACTCT
GGTGCCAACTCTGGCTCCGGTGCTGGTGAGTCCGGTGAGGGCTCTGGTGCCGACTCTGGTGCTGA
TGGCTCTGGTGCCGACTCTGGTGCTGATGGCTCTGGTGCCGACTCTGGTGCTGACACCGGCTCCG
ACTCTACTGACAACTCCGGTGCCGACTCTGGTGCCGACGCTGTCCCCCCTATCGTTTCCACTGGT
GGCGCTGGTGCCACTAAGCCCTCGATGATGGTGGCTGCCGCCGTCGTTGCCCTTTTGGCTCTCTA
ATACCCTTTCTAGCCCACGGGCTCTATATTTCGGTCTATTTATTT
Found at i:88289 original size:30 final size:30
Alignment explanation
Indices: 88225--88352 Score: 114
Period size: 30 Copynumber: 4.3 Consensus size: 30
88215 TGGCACTGGT
* * ** **
88225 AACGGTGACGGTAACGGCGACGGCAACGGT
1 AACGGTGACGGCAACGGTGACGGCTCCGAC
* * *
88255 AACGGTGACGGTAACGGTGACGGTTCTGAC
1 AACGGTGACGGCAACGGTGACGGCTCCGAC
* *
88285 AACGGT-TCTGACAACGGTGACGGCTCCGAC
1 AACGGTGAC-GGCAACGGTGACGGCTCCGAC
** *
88315 AACGGCAACGGCAACGGTGAGGGCTCCGAC
1 AACGGTGACGGCAACGGTGACGGCTCCGAC
88345 AACGGTGA
1 AACGGTGA
88353 GGGCTCTGGC
Statistics
Matches: 78, Mismatches: 18, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
29 1 0.01
30 76 0.97
31 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.36, T:0.13
Consensus pattern (30 bp):
AACGGTGACGGCAACGGTGACGGCTCCGAC
Left flanking sequence: Indices 87725 -- 88224
TCCCCCACGAGTCGACCACTGCCACTGACTGCCCTGAGTGCACCGAGTACACCACCACTTGGACT
ACCACTGGCACCGATGACAAGCCTTCCACTGACTCTGGTGTCGTTATTGTCACCACTACCGACGG
TTCGTTGACCACCACCACTTCCACCTTCCCCCACGAGTCCGAGTACACCACCACTTGGACCACCA
CTGGTACTGACGGCAAGCCCACTACTGAGTCTGGTGTGGTTGACATCACCACCAACCCCGAGGGC
GAGTTGACCACCTCTACCTCCACCTTCCCCTCCGAGCCCCTGTCTACTGAGTACACCACTACCTG
GACCTCTACTGACGGCAACGGCAACCCCGTGACCGAGTCCGGTGTTGTGGGTGTCTCTACTGACT
CTGAGGGTGACTGGACCACCGGTACCCTGACCTTCCCTCACGCTACCACCGACGACTCTGAGACC
CCCTCGTGGGTCACTGTGTACGTCACCCCTACTGCTGGCACTGGT
Right flanking sequence: Indices 88353 -- 88852
GGGCTCTGGCAACGGCGCTGACAACGGTGATGGCTCCGACTCTGGTGCTGACAACGGTGACGGCT
CCGACTCTGGTGCTGACAACGGTTCCGACAACGGTGACGGGTCCAACAACGACAACGGCGACGGC
TCTGACTCTGACTCTGGTGCCAACTCTGGCTCCGGTGCTGGTGAGTCCGGTGAGGGCTCTGGTGC
CGACTCTGGTGCTGATGGCTCTGGTGCCGACTCTGGTGCTGATGGCTCTGGTGCCGACTCTGGTG
CTGACACCGGCTCCGACTCTACTGACAACTCCGGTGCCGACTCTGGTGCCGACGCTGTCCCCCCT
ATCGTTTCCACTGGTGGCGCTGGTGCCACTAAGCCCTCGATGATGGTGGCTGCCGCCGTCGTTGC
CCTTTTGGCTCTCTAATACCCTTTCTAGCCCACGGGCTCTATATTTCGGTCTATTTATTTAAGGA
ATCCATTCAATCGTCCATTCAACCTGTGTAAGAAGATTTGTTTAA
Found at i:88325 original size:18 final size:18
Alignment explanation
Indices: 88284--88326 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
88274 ACGGTTCTGA
* *
88284 CAACGGTTCTGACAACGG
1 CAACGGCTCCGACAACGG
**
88302 TGACGGCTCCGACAACGG
1 CAACGGCTCCGACAACGG
88320 CAACGGC
1 CAACGGC
88327 AACGGTGAGG
Statistics
Matches: 19, Mismatches: 6, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.26, C:0.33, G:0.30, T:0.12
Consensus pattern (18 bp):
CAACGGCTCCGACAACGG
Left flanking sequence: Indices 87784 -- 88283
TGGACTACCACTGGCACCGATGACAAGCCTTCCACTGACTCTGGTGTCGTTATTGTCACCACTAC
CGACGGTTCGTTGACCACCACCACTTCCACCTTCCCCCACGAGTCCGAGTACACCACCACTTGGA
CCACCACTGGTACTGACGGCAAGCCCACTACTGAGTCTGGTGTGGTTGACATCACCACCAACCCC
GAGGGCGAGTTGACCACCTCTACCTCCACCTTCCCCTCCGAGCCCCTGTCTACTGAGTACACCAC
TACCTGGACCTCTACTGACGGCAACGGCAACCCCGTGACCGAGTCCGGTGTTGTGGGTGTCTCTA
CTGACTCTGAGGGTGACTGGACCACCGGTACCCTGACCTTCCCTCACGCTACCACCGACGACTCT
GAGACCCCCTCGTGGGTCACTGTGTACGTCACCCCTACTGCTGGCACTGGTAACGGTGACGGTAA
CGGCGACGGCAACGGTAACGGTGACGGTAACGGTGACGGTTCTGA
Right flanking sequence: Indices 88327 -- 88826
AACGGTGAGGGCTCCGACAACGGTGAGGGCTCTGGCAACGGCGCTGACAACGGTGATGGCTCCGA
CTCTGGTGCTGACAACGGTGACGGCTCCGACTCTGGTGCTGACAACGGTTCCGACAACGGTGACG
GGTCCAACAACGACAACGGCGACGGCTCTGACTCTGACTCTGGTGCCAACTCTGGCTCCGGTGCT
GGTGAGTCCGGTGAGGGCTCTGGTGCCGACTCTGGTGCTGATGGCTCTGGTGCCGACTCTGGTGC
TGATGGCTCTGGTGCCGACTCTGGTGCTGACACCGGCTCCGACTCTACTGACAACTCCGGTGCCG
ACTCTGGTGCCGACGCTGTCCCCCCTATCGTTTCCACTGGTGGCGCTGGTGCCACTAAGCCCTCG
ATGATGGTGGCTGCCGCCGTCGTTGCCCTTTTGGCTCTCTAATACCCTTTCTAGCCCACGGGCTC
TATATTTCGGTCTATTTATTTAAGGAATCCATTCAATCGTCCATT
Found at i:88346 original size:48 final size:48
Alignment explanation
Indices: 88294--88392 Score: 128
Period size: 48 Copynumber: 2.1 Consensus size: 48
88284 CAACGGTTCT
*
88294 GACAACGGTGACGGCTCCGACAACGGCAAC-GGCAACGGTGAGGGCTCC
1 GACAACGGTGACGGCTCCGACAACGGC-ACTGACAACGGTGAGGGCTCC
* * * * *
88342 GACAACGGTGAGGGCTCTGGCAACGGCGCTGACAACGGTGATGGCTCC
1 GACAACGGTGACGGCTCCGACAACGGCACTGACAACGGTGAGGGCTCC
88390 GAC
1 GAC
88393 TCTGGTGCTG
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
47 1 0.02
48 43 0.98
ACGTcount: A:0.23, C:0.29, G:0.36, T:0.11
Consensus pattern (48 bp):
GACAACGGTGACGGCTCCGACAACGGCACTGACAACGGTGAGGGCTCC
Left flanking sequence: Indices 87794 -- 88293
CTGGCACCGATGACAAGCCTTCCACTGACTCTGGTGTCGTTATTGTCACCACTACCGACGGTTCG
TTGACCACCACCACTTCCACCTTCCCCCACGAGTCCGAGTACACCACCACTTGGACCACCACTGG
TACTGACGGCAAGCCCACTACTGAGTCTGGTGTGGTTGACATCACCACCAACCCCGAGGGCGAGT
TGACCACCTCTACCTCCACCTTCCCCTCCGAGCCCCTGTCTACTGAGTACACCACTACCTGGACC
TCTACTGACGGCAACGGCAACCCCGTGACCGAGTCCGGTGTTGTGGGTGTCTCTACTGACTCTGA
GGGTGACTGGACCACCGGTACCCTGACCTTCCCTCACGCTACCACCGACGACTCTGAGACCCCCT
CGTGGGTCACTGTGTACGTCACCCCTACTGCTGGCACTGGTAACGGTGACGGTAACGGCGACGGC
AACGGTAACGGTGACGGTAACGGTGACGGTTCTGACAACGGTTCT
Right flanking sequence: Indices 88393 -- 88892
TCTGGTGCTGACAACGGTGACGGCTCCGACTCTGGTGCTGACAACGGTTCCGACAACGGTGACGG
GTCCAACAACGACAACGGCGACGGCTCTGACTCTGACTCTGGTGCCAACTCTGGCTCCGGTGCTG
GTGAGTCCGGTGAGGGCTCTGGTGCCGACTCTGGTGCTGATGGCTCTGGTGCCGACTCTGGTGCT
GATGGCTCTGGTGCCGACTCTGGTGCTGACACCGGCTCCGACTCTACTGACAACTCCGGTGCCGA
CTCTGGTGCCGACGCTGTCCCCCCTATCGTTTCCACTGGTGGCGCTGGTGCCACTAAGCCCTCGA
TGATGGTGGCTGCCGCCGTCGTTGCCCTTTTGGCTCTCTAATACCCTTTCTAGCCCACGGGCTCT
ATATTTCGGTCTATTTATTTAAGGAATCCATTCAATCGTCCATTCAACCTGTGTAAGAAGATTTG
TTTAAGGGAAAGTCTCAGAACCAGCAACCGAGCCCTTTTTTCGTC
Found at i:88365 original size:18 final size:18
Alignment explanation
Indices: 88323--88367 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
88313 ACAACGGCAA
88323 CGGCAACGGTGAGGGCTC
1 CGGCAACGGTGAGGGCTC
*
88341 CGACAACGGTGAGGGCTC
1 CGGCAACGGTGAGGGCTC
*
88359 TGGCAACGG
1 CGGCAACGG
88368 CGCTGACAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.20, C:0.27, G:0.42, T:0.11
Consensus pattern (18 bp):
CGGCAACGGTGAGGGCTC
Left flanking sequence: Indices 87823 -- 88322
TCTGGTGTCGTTATTGTCACCACTACCGACGGTTCGTTGACCACCACCACTTCCACCTTCCCCCA
CGAGTCCGAGTACACCACCACTTGGACCACCACTGGTACTGACGGCAAGCCCACTACTGAGTCTG
GTGTGGTTGACATCACCACCAACCCCGAGGGCGAGTTGACCACCTCTACCTCCACCTTCCCCTCC
GAGCCCCTGTCTACTGAGTACACCACTACCTGGACCTCTACTGACGGCAACGGCAACCCCGTGAC
CGAGTCCGGTGTTGTGGGTGTCTCTACTGACTCTGAGGGTGACTGGACCACCGGTACCCTGACCT
TCCCTCACGCTACCACCGACGACTCTGAGACCCCCTCGTGGGTCACTGTGTACGTCACCCCTACT
GCTGGCACTGGTAACGGTGACGGTAACGGCGACGGCAACGGTAACGGTGACGGTAACGGTGACGG
TTCTGACAACGGTTCTGACAACGGTGACGGCTCCGACAACGGCAA
Right flanking sequence: Indices 88368 -- 88867
CGCTGACAACGGTGATGGCTCCGACTCTGGTGCTGACAACGGTGACGGCTCCGACTCTGGTGCTG
ACAACGGTTCCGACAACGGTGACGGGTCCAACAACGACAACGGCGACGGCTCTGACTCTGACTCT
GGTGCCAACTCTGGCTCCGGTGCTGGTGAGTCCGGTGAGGGCTCTGGTGCCGACTCTGGTGCTGA
TGGCTCTGGTGCCGACTCTGGTGCTGATGGCTCTGGTGCCGACTCTGGTGCTGACACCGGCTCCG
ACTCTACTGACAACTCCGGTGCCGACTCTGGTGCCGACGCTGTCCCCCCTATCGTTTCCACTGGT
GGCGCTGGTGCCACTAAGCCCTCGATGATGGTGGCTGCCGCCGTCGTTGCCCTTTTGGCTCTCTA
ATACCCTTTCTAGCCCACGGGCTCTATATTTCGGTCTATTTATTTAAGGAATCCATTCAATCGTC
CATTCAACCTGTGTAAGAAGATTTGTTTAAGGGAAAGTCTCAGAA
Found at i:88403 original size:30 final size:30
Alignment explanation
Indices: 88369--88440 Score: 135
Period size: 30 Copynumber: 2.4 Consensus size: 30
88359 TGGCAACGGC
*
88369 GCTGACAACGGTGATGGCTCCGACTCTGGT
1 GCTGACAACGGTGACGGCTCCGACTCTGGT
88399 GCTGACAACGGTGACGGCTCCGACTCTGGT
1 GCTGACAACGGTGACGGCTCCGACTCTGGT
88429 GCTGACAACGGT
1 GCTGACAACGGT
88441 TCCGACAACG
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.18, C:0.28, G:0.33, T:0.21
Consensus pattern (30 bp):
GCTGACAACGGTGACGGCTCCGACTCTGGT
Left flanking sequence: Indices 87869 -- 88368
CCACTTCCACCTTCCCCCACGAGTCCGAGTACACCACCACTTGGACCACCACTGGTACTGACGGC
AAGCCCACTACTGAGTCTGGTGTGGTTGACATCACCACCAACCCCGAGGGCGAGTTGACCACCTC
TACCTCCACCTTCCCCTCCGAGCCCCTGTCTACTGAGTACACCACTACCTGGACCTCTACTGACG
GCAACGGCAACCCCGTGACCGAGTCCGGTGTTGTGGGTGTCTCTACTGACTCTGAGGGTGACTGG
ACCACCGGTACCCTGACCTTCCCTCACGCTACCACCGACGACTCTGAGACCCCCTCGTGGGTCAC
TGTGTACGTCACCCCTACTGCTGGCACTGGTAACGGTGACGGTAACGGCGACGGCAACGGTAACG
GTGACGGTAACGGTGACGGTTCTGACAACGGTTCTGACAACGGTGACGGCTCCGACAACGGCAAC
GGCAACGGTGAGGGCTCCGACAACGGTGAGGGCTCTGGCAACGGC
Right flanking sequence: Indices 88441 -- 88940
TCCGACAACGGTGACGGGTCCAACAACGACAACGGCGACGGCTCTGACTCTGACTCTGGTGCCAA
CTCTGGCTCCGGTGCTGGTGAGTCCGGTGAGGGCTCTGGTGCCGACTCTGGTGCTGATGGCTCTG
GTGCCGACTCTGGTGCTGATGGCTCTGGTGCCGACTCTGGTGCTGACACCGGCTCCGACTCTACT
GACAACTCCGGTGCCGACTCTGGTGCCGACGCTGTCCCCCCTATCGTTTCCACTGGTGGCGCTGG
TGCCACTAAGCCCTCGATGATGGTGGCTGCCGCCGTCGTTGCCCTTTTGGCTCTCTAATACCCTT
TCTAGCCCACGGGCTCTATATTTCGGTCTATTTATTTAAGGAATCCATTCAATCGTCCATTCAAC
CTGTGTAAGAAGATTTGTTTAAGGGAAAGTCTCAGAACCAGCAACCGAGCCCTTTTTTCGTCAAA
ACGCTCGCACACCATACCCTGTTTTCGTAACCCTTTTCTTGGCCA
Found at i:88554 original size:12 final size:12
Alignment explanation
Indices: 88539--88665 Score: 94
Period size: 12 Copynumber: 10.1 Consensus size: 12
88529 CCGGTGAGGG
88539 CTCTGGTGCCGA
1 CTCTGGTGCCGA
*
88551 CTCTGGTGCTGA
1 CTCTGGTGCCGA
88563 TGGCTCTGGTGCCGA
1 ---CTCTGGTGCCGA
*
88578 CTCTGGTGCTGA
1 CTCTGGTGCCGA
88590 TGGCTCTGGTGCCGA
1 ---CTCTGGTGCCGA
*
88605 CTCTGGTGCTGA
1 CTCTGGTGCCGA
* *
88617 CACCGGCT-CCGA
1 CTCTGG-TGCCGA
** * *
88629 CTCTACTGACAA
1 CTCTGGTGCCGA
*
88641 CTCCGGTGCCGA
1 CTCTGGTGCCGA
88653 CTCTGGTGCCGA
1 CTCTGGTGCCGA
88665 C
1 C
88666 GCTGTCCCCC
Statistics
Matches: 87, Mismatches: 20, Indels: 16
0.71 0.16 0.13
Matches are distributed among these distances:
11 1 0.01
12 63 0.72
13 1 0.01
15 22 0.25
ACGTcount: A:0.11, C:0.32, G:0.31, T:0.25
Consensus pattern (12 bp):
CTCTGGTGCCGA
Left flanking sequence: Indices 88039 -- 88538
ACCACTACCTGGACCTCTACTGACGGCAACGGCAACCCCGTGACCGAGTCCGGTGTTGTGGGTGT
CTCTACTGACTCTGAGGGTGACTGGACCACCGGTACCCTGACCTTCCCTCACGCTACCACCGACG
ACTCTGAGACCCCCTCGTGGGTCACTGTGTACGTCACCCCTACTGCTGGCACTGGTAACGGTGAC
GGTAACGGCGACGGCAACGGTAACGGTGACGGTAACGGTGACGGTTCTGACAACGGTTCTGACAA
CGGTGACGGCTCCGACAACGGCAACGGCAACGGTGAGGGCTCCGACAACGGTGAGGGCTCTGGCA
ACGGCGCTGACAACGGTGATGGCTCCGACTCTGGTGCTGACAACGGTGACGGCTCCGACTCTGGT
GCTGACAACGGTTCCGACAACGGTGACGGGTCCAACAACGACAACGGCGACGGCTCTGACTCTGA
CTCTGGTGCCAACTCTGGCTCCGGTGCTGGTGAGTCCGGTGAGGG
Right flanking sequence: Indices 88666 -- 89165
GCTGTCCCCCCTATCGTTTCCACTGGTGGCGCTGGTGCCACTAAGCCCTCGATGATGGTGGCTGC
CGCCGTCGTTGCCCTTTTGGCTCTCTAATACCCTTTCTAGCCCACGGGCTCTATATTTCGGTCTA
TTTATTTAAGGAATCCATTCAATCGTCCATTCAACCTGTGTAAGAAGATTTGTTTAAGGGAAAGT
CTCAGAACCAGCAACCGAGCCCTTTTTTCGTCAAAACGCTCGCACACCATACCCTGTTTTCGTAA
CCCTTTTCTTGGCCATCTTGGCGATCGATCGCACATTGCATAATGGACTAAAGCATGCCATTAAG
GCTGCCCCTGAATACATCCAAAAGGCGTTGGAGCACGTATAAATCAATCCATCACGCACATTTTA
ACCAACCTCACAACCAACTCCACAACCTATTCCACAACCAACCTCACAACCATCCTCACAACACT
CACTTCACAAAATTCTTTACGTTTATTAAATTCGGTCTGGAACTG
Found at i:88567 original size:27 final size:27
Alignment explanation
Indices: 88537--88616 Score: 160
Period size: 27 Copynumber: 3.0 Consensus size: 27
88527 GTCCGGTGAG
88537 GGCTCTGGTGCCGACTCTGGTGCTGAT
1 GGCTCTGGTGCCGACTCTGGTGCTGAT
88564 GGCTCTGGTGCCGACTCTGGTGCTGAT
1 GGCTCTGGTGCCGACTCTGGTGCTGAT
88591 GGCTCTGGTGCCGACTCTGGTGCTGA
1 GGCTCTGGTGCCGACTCTGGTGCTGA
88617 CACCGGCTCC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.07, C:0.26, G:0.38, T:0.29
Consensus pattern (27 bp):
GGCTCTGGTGCCGACTCTGGTGCTGAT
Left flanking sequence: Indices 88037 -- 88536
ACACCACTACCTGGACCTCTACTGACGGCAACGGCAACCCCGTGACCGAGTCCGGTGTTGTGGGT
GTCTCTACTGACTCTGAGGGTGACTGGACCACCGGTACCCTGACCTTCCCTCACGCTACCACCGA
CGACTCTGAGACCCCCTCGTGGGTCACTGTGTACGTCACCCCTACTGCTGGCACTGGTAACGGTG
ACGGTAACGGCGACGGCAACGGTAACGGTGACGGTAACGGTGACGGTTCTGACAACGGTTCTGAC
AACGGTGACGGCTCCGACAACGGCAACGGCAACGGTGAGGGCTCCGACAACGGTGAGGGCTCTGG
CAACGGCGCTGACAACGGTGATGGCTCCGACTCTGGTGCTGACAACGGTGACGGCTCCGACTCTG
GTGCTGACAACGGTTCCGACAACGGTGACGGGTCCAACAACGACAACGGCGACGGCTCTGACTCT
GACTCTGGTGCCAACTCTGGCTCCGGTGCTGGTGAGTCCGGTGAG
Right flanking sequence: Indices 88617 -- 89116
CACCGGCTCCGACTCTACTGACAACTCCGGTGCCGACTCTGGTGCCGACGCTGTCCCCCCTATCG
TTTCCACTGGTGGCGCTGGTGCCACTAAGCCCTCGATGATGGTGGCTGCCGCCGTCGTTGCCCTT
TTGGCTCTCTAATACCCTTTCTAGCCCACGGGCTCTATATTTCGGTCTATTTATTTAAGGAATCC
ATTCAATCGTCCATTCAACCTGTGTAAGAAGATTTGTTTAAGGGAAAGTCTCAGAACCAGCAACC
GAGCCCTTTTTTCGTCAAAACGCTCGCACACCATACCCTGTTTTCGTAACCCTTTTCTTGGCCAT
CTTGGCGATCGATCGCACATTGCATAATGGACTAAAGCATGCCATTAAGGCTGCCCCTGAATACA
TCCAAAAGGCGTTGGAGCACGTATAAATCAATCCATCACGCACATTTTAACCAACCTCACAACCA
ACTCCACAACCTATTCCACAACCAACCTCACAACCATCCTCACAA
Found at i:88571 original size:15 final size:15
Alignment explanation
Indices: 88551--88601 Score: 72
Period size: 15 Copynumber: 3.6 Consensus size: 15
88541 CTGGTGCCGA
88551 CTCTGGTGCTGATGG
1 CTCTGGTGCTGATGG
*
88566 CTCTGGTGCCGA---
1 CTCTGGTGCTGATGG
88578 CTCTGGTGCTGATGG
1 CTCTGGTGCTGATGG
88593 CTCTGGTGC
1 CTCTGGTGC
88602 CGACTCTGGT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
12 11 0.35
15 20 0.65
ACGTcount: A:0.06, C:0.25, G:0.37, T:0.31
Consensus pattern (15 bp):
CTCTGGTGCTGATGG
Left flanking sequence: Indices 88051 -- 88550
ACCTCTACTGACGGCAACGGCAACCCCGTGACCGAGTCCGGTGTTGTGGGTGTCTCTACTGACTC
TGAGGGTGACTGGACCACCGGTACCCTGACCTTCCCTCACGCTACCACCGACGACTCTGAGACCC
CCTCGTGGGTCACTGTGTACGTCACCCCTACTGCTGGCACTGGTAACGGTGACGGTAACGGCGAC
GGCAACGGTAACGGTGACGGTAACGGTGACGGTTCTGACAACGGTTCTGACAACGGTGACGGCTC
CGACAACGGCAACGGCAACGGTGAGGGCTCCGACAACGGTGAGGGCTCTGGCAACGGCGCTGACA
ACGGTGATGGCTCCGACTCTGGTGCTGACAACGGTGACGGCTCCGACTCTGGTGCTGACAACGGT
TCCGACAACGGTGACGGGTCCAACAACGACAACGGCGACGGCTCTGACTCTGACTCTGGTGCCAA
CTCTGGCTCCGGTGCTGGTGAGTCCGGTGAGGGCTCTGGTGCCGA
Right flanking sequence: Indices 88602 -- 89101
CGACTCTGGTGCTGACACCGGCTCCGACTCTACTGACAACTCCGGTGCCGACTCTGGTGCCGACG
CTGTCCCCCCTATCGTTTCCACTGGTGGCGCTGGTGCCACTAAGCCCTCGATGATGGTGGCTGCC
GCCGTCGTTGCCCTTTTGGCTCTCTAATACCCTTTCTAGCCCACGGGCTCTATATTTCGGTCTAT
TTATTTAAGGAATCCATTCAATCGTCCATTCAACCTGTGTAAGAAGATTTGTTTAAGGGAAAGTC
TCAGAACCAGCAACCGAGCCCTTTTTTCGTCAAAACGCTCGCACACCATACCCTGTTTTCGTAAC
CCTTTTCTTGGCCATCTTGGCGATCGATCGCACATTGCATAATGGACTAAAGCATGCCATTAAGG
CTGCCCCTGAATACATCCAAAAGGCGTTGGAGCACGTATAAATCAATCCATCACGCACATTTTAA
CCAACCTCACAACCAACTCCACAACCTATTCCACAACCAACCTCA
Found at i:89072 original size:12 final size:12
Alignment explanation
Indices: 89055--89117 Score: 67
Period size: 12 Copynumber: 5.2 Consensus size: 12
89045 CGCACATTTT
89055 AACCAACCTCAC
1 AACCAACCTCAC
89067 AACCAA-CTCCAC
1 AACCAACCT-CAC
* *
89079 AACCTA-TTCCAC
1 AACCAACCT-CAC
89091 AACCAACCTCAC
1 AACCAACCTCAC
*
89103 AACCATCCTCAC
1 AACCAACCTCAC
89115 AAC
1 AAC
89118 ACTCACTTCA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
11 2 0.05
12 41 0.93
13 1 0.02
ACGTcount: A:0.40, C:0.48, G:0.00, T:0.13
Consensus pattern (12 bp):
AACCAACCTCAC
Left flanking sequence: Indices 88555 -- 89054
GGTGCTGATGGCTCTGGTGCCGACTCTGGTGCTGATGGCTCTGGTGCCGACTCTGGTGCTGACAC
CGGCTCCGACTCTACTGACAACTCCGGTGCCGACTCTGGTGCCGACGCTGTCCCCCCTATCGTTT
CCACTGGTGGCGCTGGTGCCACTAAGCCCTCGATGATGGTGGCTGCCGCCGTCGTTGCCCTTTTG
GCTCTCTAATACCCTTTCTAGCCCACGGGCTCTATATTTCGGTCTATTTATTTAAGGAATCCATT
CAATCGTCCATTCAACCTGTGTAAGAAGATTTGTTTAAGGGAAAGTCTCAGAACCAGCAACCGAG
CCCTTTTTTCGTCAAAACGCTCGCACACCATACCCTGTTTTCGTAACCCTTTTCTTGGCCATCTT
GGCGATCGATCGCACATTGCATAATGGACTAAAGCATGCCATTAAGGCTGCCCCTGAATACATCC
AAAAGGCGTTGGAGCACGTATAAATCAATCCATCACGCACATTTT
Right flanking sequence: Indices 89118 -- 89617
ACTCACTTCACAAAATTCTTTACGTTTATTAAATTCGGTCTGGAACTGAAACCAATATGAATACA
GGAGGTTTGGATAGACATCCAAACCGGGCTGGCAATGCCAAAAGATAATTTAGGACAACGATAGT
GTCTATCACGTCTCCAGCGCGTCGGCAAACGGTGACTTGCGGTCGTCGTCACTCACAACAAAAGT
GGGCCGGCTGGTGGGCTGCAAGGGCTCTGCCAGCTCCATGGTGGTGTCGGGCTCCGCCCGGGCCG
GCTGCACTGGCGCAGGGGTGGGCTCAACGAGAGGAGGGCCAAATGGGGACGGCAGTCGCTCCTCC
TCCTCGGCAATCGGGTTCGGATCGGTGAAACTCGAGCCGGTATGCACGGTGCCGTTGGCACTCCC
GTTTGGAGCCATCGGGGTGGCGCCACCATTCCCGTTCACGTTCCCGTTGGGGGTGAGCGCGTGAC
CACCCCGTTTGGGCGAAAACTGCGACAACGACGACCGCGGCGACT
Found at i:105301 original size:19 final size:19
Alignment explanation
Indices: 105273--105347 Score: 82
Period size: 19 Copynumber: 3.8 Consensus size: 19
105263 ACCCGTACAC
*
105273 CCAAAACACCCAAACAACA
1 CCAAACCACCCAAACAACA
*
105292 CCAAACCACCCAACCAACA
1 CCAAACCACCCAAACAACA
105311 CCCAACACCA-CCAAAC-ACA
1 -CCAA-ACCACCCAAACAACA
105330 CCAAACACACCCCAAACA
1 CCAAAC-CA-CCCAAACA
105348 CTCCACACAC
Statistics
Matches: 47, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
17 2 0.04
18 6 0.13
19 20 0.43
20 15 0.32
21 4 0.09
ACGTcount: A:0.51, C:0.49, G:0.00, T:0.00
Consensus pattern (19 bp):
CCAAACCACCCAAACAACA
Left flanking sequence: Indices 104773 -- 105272
CCGCAACCCCTTGCACGTGGACCCCAACAACGCCAAGAACGCTAAGTTCGACAAGCCTATTTTGC
ACGGTTTGTGCACCTTGGGCCACTCTGTCAAGTTGTTGTTGGACAAGTACGGTGGCTTTGACGAG
GTCAAGGCCCGTTTCACCGGTGTGGTGTACCCCGGCGAGACCTTGCGTGTCACTGCCTGGAAGCA
GGGCGACAAGGTGTTGTTCGAGACCCACGTTGTCGAGAGAGGCACTCTTGTCATTTCTAACGCCG
CCATCAAGTTGGTTGGCGACAAGGCCAACTTGTAACGTATTTATTCAATAAGATATAGGAATTTG
CAGCCATGCGCGTAATGTACCGGATTGGGAAGTAAAAGGCAGCTCAAGTGGGTTCTAATGTAGAT
GATGTCACAGTTGTCACAGTGATTTCGTGTAGAGTCGAAGCAGATGAAGCCTATCTTTCGCGCTG
ACACCAGACTTCACGGCCCCTAAGGAACTTCAACCACCCGTACAC
Right flanking sequence: Indices 105348 -- 105847
CTCCACACACCCACACACCCCACACACCCACACACCCGCACACCAACCCACTACACCATCCTTCT
ACCTATCTTATGTATTGCCTTTCAGCTATGCTATTTTAGCCCCGTTCCCGCGGCAACCGGTCGTT
CATCGAGAGCGACTGGCGCAACGAAAACGCCACTTTGCTCGGGGGAGGCTGGGCGCGTGTCGGCG
GCGCCGTGGGCACCACGCTGTACTTGCGCTCCTTGAACTGGACCCCGACCTCGGCCACGTTCTTT
TTGTGCTCGGGGGTCACCGGGACAAACCAGTCAATCCCCTCGTCGTACTCGTACATCCGGTAGTC
AGTACCGTACGGCTTCAGCTCCAAGCAGTACAACGTGTGGAGCGGCACGTCCAACTGGCCGATCA
GCGCCTTCTCGAGGTTCAAGAAGTACGCCAAGAGAATCCGCAACACCACGCGGTGGGCAATGATC
AACAAGTGGTCGGTGGTGCGCTCGATCTCGGTGATGAGCGGGCGC
Found at i:105336 original size:26 final size:28
Alignment explanation
Indices: 105270--105347 Score: 88
Period size: 29 Copynumber: 2.7 Consensus size: 28
105260 ACCACCCGTA
105270 CACCCAAAACACCCAAACAACACCAAAC
1 CACCCAAAACACCCAAACAACACCAAAC
*
105298 CACCCAACCAACACCC-AACACCACCAAA-
1 CACCCAA--AACACCCAAACAACACCAAAC
105326 CACACCAAACACACCCCAAACA
1 CAC-CCAAA-ACA-CCCAAACA
105348 CTCCACACAC
Statistics
Matches: 43, Mismatches: 1, Indels: 10
0.80 0.02 0.19
Matches are distributed among these distances:
27 1 0.02
28 13 0.30
29 18 0.42
30 11 0.26
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (28 bp):
CACCCAAAACACCCAAACAACACCAAAC
Left flanking sequence: Indices 104770 -- 105269
TGACCGCAACCCCTTGCACGTGGACCCCAACAACGCCAAGAACGCTAAGTTCGACAAGCCTATTT
TGCACGGTTTGTGCACCTTGGGCCACTCTGTCAAGTTGTTGTTGGACAAGTACGGTGGCTTTGAC
GAGGTCAAGGCCCGTTTCACCGGTGTGGTGTACCCCGGCGAGACCTTGCGTGTCACTGCCTGGAA
GCAGGGCGACAAGGTGTTGTTCGAGACCCACGTTGTCGAGAGAGGCACTCTTGTCATTTCTAACG
CCGCCATCAAGTTGGTTGGCGACAAGGCCAACTTGTAACGTATTTATTCAATAAGATATAGGAAT
TTGCAGCCATGCGCGTAATGTACCGGATTGGGAAGTAAAAGGCAGCTCAAGTGGGTTCTAATGTA
GATGATGTCACAGTTGTCACAGTGATTTCGTGTAGAGTCGAAGCAGATGAAGCCTATCTTTCGCG
CTGACACCAGACTTCACGGCCCCTAAGGAACTTCAACCACCCGTA
Right flanking sequence: Indices 105348 -- 105847
CTCCACACACCCACACACCCCACACACCCACACACCCGCACACCAACCCACTACACCATCCTTCT
ACCTATCTTATGTATTGCCTTTCAGCTATGCTATTTTAGCCCCGTTCCCGCGGCAACCGGTCGTT
CATCGAGAGCGACTGGCGCAACGAAAACGCCACTTTGCTCGGGGGAGGCTGGGCGCGTGTCGGCG
GCGCCGTGGGCACCACGCTGTACTTGCGCTCCTTGAACTGGACCCCGACCTCGGCCACGTTCTTT
TTGTGCTCGGGGGTCACCGGGACAAACCAGTCAATCCCCTCGTCGTACTCGTACATCCGGTAGTC
AGTACCGTACGGCTTCAGCTCCAAGCAGTACAACGTGTGGAGCGGCACGTCCAACTGGCCGATCA
GCGCCTTCTCGAGGTTCAAGAAGTACGCCAAGAGAATCCGCAACACCACGCGGTGGGCAATGATC
AACAAGTGGTCGGTGGTGCGCTCGATCTCGGTGATGAGCGGGCGC
Found at i:105357 original size:20 final size:21
Alignment explanation
Indices: 105315--105361 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
105305 CCAACACCCA
105315 ACACCACCAAACACACCAAAC
1 ACACCACCAAACACACCAAAC
* *
105336 ACACC-CCAAACACTCCACAC
1 ACACCACCAAACACACCAAAC
105356 AC-CCAC
1 ACACCAC
105362 ACACCCCACA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 2 0.09
20 16 0.70
21 5 0.22
ACGTcount: A:0.45, C:0.53, G:0.00, T:0.02
Consensus pattern (21 bp):
ACACCACCAAACACACCAAAC
Left flanking sequence: Indices 104815 -- 105314
TAAGTTCGACAAGCCTATTTTGCACGGTTTGTGCACCTTGGGCCACTCTGTCAAGTTGTTGTTGG
ACAAGTACGGTGGCTTTGACGAGGTCAAGGCCCGTTTCACCGGTGTGGTGTACCCCGGCGAGACC
TTGCGTGTCACTGCCTGGAAGCAGGGCGACAAGGTGTTGTTCGAGACCCACGTTGTCGAGAGAGG
CACTCTTGTCATTTCTAACGCCGCCATCAAGTTGGTTGGCGACAAGGCCAACTTGTAACGTATTT
ATTCAATAAGATATAGGAATTTGCAGCCATGCGCGTAATGTACCGGATTGGGAAGTAAAAGGCAG
CTCAAGTGGGTTCTAATGTAGATGATGTCACAGTTGTCACAGTGATTTCGTGTAGAGTCGAAGCA
GATGAAGCCTATCTTTCGCGCTGACACCAGACTTCACGGCCCCTAAGGAACTTCAACCACCCGTA
CACCCAAAACACCCAAACAACACCAAACCACCCAACCAACACCCA
Right flanking sequence: Indices 105362 -- 105861
ACACCCCACACACCCACACACCCGCACACCAACCCACTACACCATCCTTCTACCTATCTTATGTA
TTGCCTTTCAGCTATGCTATTTTAGCCCCGTTCCCGCGGCAACCGGTCGTTCATCGAGAGCGACT
GGCGCAACGAAAACGCCACTTTGCTCGGGGGAGGCTGGGCGCGTGTCGGCGGCGCCGTGGGCACC
ACGCTGTACTTGCGCTCCTTGAACTGGACCCCGACCTCGGCCACGTTCTTTTTGTGCTCGGGGGT
CACCGGGACAAACCAGTCAATCCCCTCGTCGTACTCGTACATCCGGTAGTCAGTACCGTACGGCT
TCAGCTCCAAGCAGTACAACGTGTGGAGCGGCACGTCCAACTGGCCGATCAGCGCCTTCTCGAGG
TTCAAGAAGTACGCCAAGAGAATCCGCAACACCACGCGGTGGGCAATGATCAACAAGTGGTCGGT
GGTGCGCTCGATCTCGGTGATGAGCGGGCGCAACCGCGTCAACAC
Found at i:105358 original size:39 final size:38
Alignment explanation
Indices: 105269--105358 Score: 96
Period size: 39 Copynumber: 2.3 Consensus size: 38
105259 AACCACCCGT
* *
105269 ACACCCAA-AACACCCAAACAACACCAAACCACCCAACCA
1 ACACCCAACACCA-CCAAACAACACCAAACCACCC-ACAA
105308 ACACCCAACACCACCAAAC-ACACCAAACACACCC-CAA
1 ACACCCAACACCACCAAACAACACCAAAC-CACCCACAA
105345 ACACTCCACACACC
1 ACAC-CCA-ACACC
105359 CACACACCCC
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
37 6 0.13
38 12 0.27
39 24 0.53
40 3 0.07
ACGTcount: A:0.48, C:0.51, G:0.00, T:0.01
Consensus pattern (38 bp):
ACACCCAACACCACCAAACAACACCAAACCACCCACAA
Left flanking sequence: Indices 104769 -- 105268
GTGACCGCAACCCCTTGCACGTGGACCCCAACAACGCCAAGAACGCTAAGTTCGACAAGCCTATT
TTGCACGGTTTGTGCACCTTGGGCCACTCTGTCAAGTTGTTGTTGGACAAGTACGGTGGCTTTGA
CGAGGTCAAGGCCCGTTTCACCGGTGTGGTGTACCCCGGCGAGACCTTGCGTGTCACTGCCTGGA
AGCAGGGCGACAAGGTGTTGTTCGAGACCCACGTTGTCGAGAGAGGCACTCTTGTCATTTCTAAC
GCCGCCATCAAGTTGGTTGGCGACAAGGCCAACTTGTAACGTATTTATTCAATAAGATATAGGAA
TTTGCAGCCATGCGCGTAATGTACCGGATTGGGAAGTAAAAGGCAGCTCAAGTGGGTTCTAATGT
AGATGATGTCACAGTTGTCACAGTGATTTCGTGTAGAGTCGAAGCAGATGAAGCCTATCTTTCGC
GCTGACACCAGACTTCACGGCCCCTAAGGAACTTCAACCACCCGT
Right flanking sequence: Indices 105359 -- 105858
CACACACCCCACACACCCACACACCCGCACACCAACCCACTACACCATCCTTCTACCTATCTTAT
GTATTGCCTTTCAGCTATGCTATTTTAGCCCCGTTCCCGCGGCAACCGGTCGTTCATCGAGAGCG
ACTGGCGCAACGAAAACGCCACTTTGCTCGGGGGAGGCTGGGCGCGTGTCGGCGGCGCCGTGGGC
ACCACGCTGTACTTGCGCTCCTTGAACTGGACCCCGACCTCGGCCACGTTCTTTTTGTGCTCGGG
GGTCACCGGGACAAACCAGTCAATCCCCTCGTCGTACTCGTACATCCGGTAGTCAGTACCGTACG
GCTTCAGCTCCAAGCAGTACAACGTGTGGAGCGGCACGTCCAACTGGCCGATCAGCGCCTTCTCG
AGGTTCAAGAAGTACGCCAAGAGAATCCGCAACACCACGCGGTGGGCAATGATCAACAAGTGGTC
GGTGGTGCGCTCGATCTCGGTGATGAGCGGGCGCAACCGCGTCAA
Found at i:105365 original size:17 final size:16
Alignment explanation
Indices: 105334--105391 Score: 71
Period size: 17 Copynumber: 3.4 Consensus size: 16
105324 AACACACCAA
*
105334 ACACACCCCAAACACTCC
1 ACACA-CCCACACAC-CC
105352 ACACACCCACACACCCC
1 ACACACCCACACA-CCC
105369 ACACACCCACACACCC
1 ACACACCCACACACCC
*
105385 GCACACC
1 ACACACC
105392 AACCCACTAC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
16 9 0.24
17 22 0.59
18 6 0.16
ACGTcount: A:0.36, C:0.60, G:0.02, T:0.02
Consensus pattern (16 bp):
ACACACCCACACACCC
Left flanking sequence: Indices 104834 -- 105333
TTGCACGGTTTGTGCACCTTGGGCCACTCTGTCAAGTTGTTGTTGGACAAGTACGGTGGCTTTGA
CGAGGTCAAGGCCCGTTTCACCGGTGTGGTGTACCCCGGCGAGACCTTGCGTGTCACTGCCTGGA
AGCAGGGCGACAAGGTGTTGTTCGAGACCCACGTTGTCGAGAGAGGCACTCTTGTCATTTCTAAC
GCCGCCATCAAGTTGGTTGGCGACAAGGCCAACTTGTAACGTATTTATTCAATAAGATATAGGAA
TTTGCAGCCATGCGCGTAATGTACCGGATTGGGAAGTAAAAGGCAGCTCAAGTGGGTTCTAATGT
AGATGATGTCACAGTTGTCACAGTGATTTCGTGTAGAGTCGAAGCAGATGAAGCCTATCTTTCGC
GCTGACACCAGACTTCACGGCCCCTAAGGAACTTCAACCACCCGTACACCCAAAACACCCAAACA
ACACCAAACCACCCAACCAACACCCAACACCACCAAACACACCAA
Right flanking sequence: Indices 105392 -- 105891
AACCCACTACACCATCCTTCTACCTATCTTATGTATTGCCTTTCAGCTATGCTATTTTAGCCCCG
TTCCCGCGGCAACCGGTCGTTCATCGAGAGCGACTGGCGCAACGAAAACGCCACTTTGCTCGGGG
GAGGCTGGGCGCGTGTCGGCGGCGCCGTGGGCACCACGCTGTACTTGCGCTCCTTGAACTGGACC
CCGACCTCGGCCACGTTCTTTTTGTGCTCGGGGGTCACCGGGACAAACCAGTCAATCCCCTCGTC
GTACTCGTACATCCGGTAGTCAGTACCGTACGGCTTCAGCTCCAAGCAGTACAACGTGTGGAGCG
GCACGTCCAACTGGCCGATCAGCGCCTTCTCGAGGTTCAAGAAGTACGCCAAGAGAATCCGCAAC
ACCACGCGGTGGGCAATGATCAACAAGTGGTCGGTGGTGCGCTCGATCTCGGTGATGAGCGGGCG
CAACCGCGTCAACACGTCCAAGTACAGCTCGCCACCCACGCCAGG
Found at i:105389 original size:8 final size:8
Alignment explanation
Indices: 105334--105391 Score: 71
Period size: 8 Copynumber: 6.9 Consensus size: 8
105324 AACACACCAA
105334 ACACACCCC
1 ACACA-CCC
*
105343 AAACACTCC
1 ACACAC-CC
105352 ACACACCC
1 ACACACCC
105360 ACACACCCC
1 ACACA-CCC
105369 ACACACCC
1 ACACACCC
105377 ACACACCC
1 ACACACCC
*
105385 GCACACC
1 ACACACC
105392 AACCCACTAC
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
8 25 0.57
9 19 0.43
ACGTcount: A:0.36, C:0.60, G:0.02, T:0.02
Consensus pattern (8 bp):
ACACACCC
Left flanking sequence: Indices 104834 -- 105333
TTGCACGGTTTGTGCACCTTGGGCCACTCTGTCAAGTTGTTGTTGGACAAGTACGGTGGCTTTGA
CGAGGTCAAGGCCCGTTTCACCGGTGTGGTGTACCCCGGCGAGACCTTGCGTGTCACTGCCTGGA
AGCAGGGCGACAAGGTGTTGTTCGAGACCCACGTTGTCGAGAGAGGCACTCTTGTCATTTCTAAC
GCCGCCATCAAGTTGGTTGGCGACAAGGCCAACTTGTAACGTATTTATTCAATAAGATATAGGAA
TTTGCAGCCATGCGCGTAATGTACCGGATTGGGAAGTAAAAGGCAGCTCAAGTGGGTTCTAATGT
AGATGATGTCACAGTTGTCACAGTGATTTCGTGTAGAGTCGAAGCAGATGAAGCCTATCTTTCGC
GCTGACACCAGACTTCACGGCCCCTAAGGAACTTCAACCACCCGTACACCCAAAACACCCAAACA
ACACCAAACCACCCAACCAACACCCAACACCACCAAACACACCAA
Right flanking sequence: Indices 105392 -- 105891
AACCCACTACACCATCCTTCTACCTATCTTATGTATTGCCTTTCAGCTATGCTATTTTAGCCCCG
TTCCCGCGGCAACCGGTCGTTCATCGAGAGCGACTGGCGCAACGAAAACGCCACTTTGCTCGGGG
GAGGCTGGGCGCGTGTCGGCGGCGCCGTGGGCACCACGCTGTACTTGCGCTCCTTGAACTGGACC
CCGACCTCGGCCACGTTCTTTTTGTGCTCGGGGGTCACCGGGACAAACCAGTCAATCCCCTCGTC
GTACTCGTACATCCGGTAGTCAGTACCGTACGGCTTCAGCTCCAAGCAGTACAACGTGTGGAGCG
GCACGTCCAACTGGCCGATCAGCGCCTTCTCGAGGTTCAAGAAGTACGCCAAGAGAATCCGCAAC
ACCACGCGGTGGGCAATGATCAACAAGTGGTCGGTGGTGCGCTCGATCTCGGTGATGAGCGGGCG
CAACCGCGTCAACACGTCCAAGTACAGCTCGCCACCCACGCCAGG
Found at i:108307 original size:18 final size:17
Alignment explanation
Indices: 108284--108328 Score: 58
Period size: 15 Copynumber: 2.7 Consensus size: 17
108274 CGAGCCCGGG
*
108284 TGCCCGTGGGCGTGGCTT
1 TGCCCGTGGGCGTGGC-C
108302 TGCCCGT-GG-GTGGCC
1 TGCCCGTGGGCGTGGCC
108317 TGCCCGTGGGCG
1 TGCCCGTGGGCG
108329 GACTGGGTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
15 7 0.29
16 7 0.29
17 3 0.12
18 7 0.29
ACGTcount: A:0.00, C:0.31, G:0.47, T:0.22
Consensus pattern (17 bp):
TGCCCGTGGGCGTGGCC
Left flanking sequence: Indices 107784 -- 108283
GGATCGGCGCCAGCGTGAACGGCAGCACCGACGACAGCAGGCGCAACTCGCCCAAGTTCAAGTGC
GAGATGGTTTTGCCGAGCGGCGCCTCCTCCTCGATGTCGTCGATGTCCAGGGTGACCCGGGTCAC
CGGCAGCGCCAACAGCAGCACGATGGGGGTGTCGGTCAACGGGCGCTTGTTGAACTCGGGAAGCA
GCAGCGTCAGCCCGTGCGCCAGCGAGAGCGTCAGGTCCAACAGCTTCAGCATCCCGATGTCGGGG
GCGTACGGGCGGCGGCGCCACCCGGCCGCCATCTGTGCAGGGGTGGGCAGCGGCAGGTTCAGGAT
CAGGAGGGCCCGGAGCCGAGGCACCGGGTGCGAGAGCGCGGGGTGGAGCCGCCGTGGCTCCTCGG
ACTCCAGCTCGGAGTCCAGCTCGCCCGACGAGATCAGCGCCAGCGAGCACGCCAGGTGGAGGTTG
GAGAACGACACCTTCTTGCGGGCGGCGCCCAAGTGCGAGCCCGGG
Right flanking sequence: Indices 108329 -- 108828
GACTGGGTGGACTGGCCGGTTTGGCCGTGGGCCTGCGACCCGTGGTCCGAAACGCCCAGATGGAC
ACGCGAGAGACTGGACGGGGTGTGCACGGACTGGCCCTGGTGCGCCGCGTGGAGCTGCGAGAGCC
CCGACGGGCCCTGGTGCCCGCCGTGGCTGATGCCCTCCTTGGCAAACGGCTGGTTGGCAAAATGC
TGGTTCTGGGCGAGGCTCAGGCCAAACAGCGGGATGTGCGGGGGGTGGGGGCTTTGCAGGCCCTG
GTGGCTGAGCGGGCTGGGCGACAGCTGGGCCAATGGCGCTCCTGCGGTGAAACCGTGGATGCCTC
CCGGCTGGTACAAATGGGGTGGCGAGCTCGTTTTGGTGAGCGGAACCCGGGTCTCGGGGGTCAGC
GACTTGGCCACACGCATCACCTGCTCGGGCAGCTTGCTGTTGTAGTAGCGGTACCGCTCCTGGAG
CGCCTCCGAGAGGTTCAGCCGCAACGGACGGCGGGCATCTCTCGG
Found at i:109533 original size:13 final size:13
Alignment explanation
Indices: 109515--109552 Score: 76
Period size: 13 Copynumber: 2.9 Consensus size: 13
109505 TGATCACTGG
109515 TGTCATCGGTGGA
1 TGTCATCGGTGGA
109528 TGTCATCGGTGGA
1 TGTCATCGGTGGA
109541 TGTCATCGGTGG
1 TGTCATCGGTGG
109553 GGTGGTGAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.13, C:0.16, G:0.39, T:0.32
Consensus pattern (13 bp):
TGTCATCGGTGGA
Left flanking sequence: Indices 109015 -- 109514
GAGGGGAAGCGAGTGGGGCAACGGTTGGAAGGTGGAAGGAAGGACGACCCGGGAGCGACGAGGGA
GAGGGTGTGTGGGGGCTACGAGGGTGGGCTGTAGGCTACGGTGGTTTCGTTTTTTGCTGGGGTTC
GCATTGATTTTGGGTTTCGTAGGTATCGTGTAGCATTGTCAGGACGTTCCATCGATGACTGGGCA
CGTGGAGCCAAGGATTACGGAGCGACCCCGGGGTGTCGTCGCATGCGCCTGCGGTGTAGCCACAA
GAGGTGGGGTGGGTTCGCTTACGTTTTGTGGCTGGTGGGACCACTGGCGCAATCGTTGCTTTTGT
CCCTCGGTGATACGAGAGGTGGATCTCACGGTTGCTGGGGTCGGTGTGGAGGTGGGCACCGGCAG
GGCTACGGTGTGGCCTCAAGAGGTGGTGAGGCTCGGGGGCGCAGCTGTCACCCTGGGAACGCCGG
CTCCTGCGGGGCTAATGGTCATCGCAGAAATCAGGTGATCACTGG
Right flanking sequence: Indices 109553 -- 110052
GGTGGTGAAGTGACGGTGGGTTGGGTGGTGTTTACGGTGTCAGCGTGGACCCTGTGGGGGACACA
GGGTTCAGTTGCCGGTGACTGGTTACGCTCAGACCGTGTCTGAAATAGTCTGAAATTGCTGGATG
TGTCAAACCGGTGTCTGAAAAGTAATTTTCAAGGTCGACGCCAGGTCCATTGTGACGGGTTATTG
TAACCAATCGTCGCGTGCGAAGGGTTTCGTTTCACCGTCTACAGATCGAACAATAAGCCCGGGCT
CATCGTAGCCACCACGTAGTGAGTCACCCCAAGTGCAGCACGGTTACGAGTGCGAGTGCCCGTTT
AGGAAACAGACAGGCGAGCATGCCACCGAAAGTATGGCTCAACTGCTCACGGCCGGGTTTCCCAA
AGGGGAACGCGGAAAAACTACCAAGGTGACGCGGCCGGACTTATGTAGACGAGTGCATCGCAGGA
GAATGCGGCGGGGCTGAGGCAGTTTCGGCGGCAGATTCACTGCTG
Found at i:141199 original size:14 final size:15
Alignment explanation
Indices: 141174--141202 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
141164 TCACATCTCT
141174 TCCTTCTCTTCCTTC
1 TCCTTCTCTTCCTTC
141189 TCCTT-TCTTCCTTC
1 TCCTTCTCTTCCTTC
141203 CTTCTCCGCC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.00, C:0.45, G:0.00, T:0.55
Consensus pattern (15 bp):
TCCTTCTCTTCCTTC
Left flanking sequence: Indices 140674 -- 141173
GCAGTCGGAGTAGGGTGGTAGCTGTTAGATGCACAGGCCCGTGGGTGGAGGTGCGTGATACACTT
AATTAAGCTACTAATTAGGCCAATTGATAGGTGCCTGCCACTCGGAAGGGATACACTGGCGTATG
TGTCGCTCCTGACGCCCACAATTGCCTATTGTGCCCTGTCAATGCACGAGCCTCGTGGCTAGAGC
AACTGGAAAAGAAACAGTGACAGGTGAGCGTGAAATAGTGACAGAGAGCAAAGAGGCACTTTGCA
TGGGGCGAACACAAGTGGGTGTTGGTCATGGTAGGAGCAATCCTTCACTTTTCACTGCTCTGAAA
CACAACCAAACCACTCTCTCCACACTCGTCCATGGCTCGCTACATCATACCACTCTAACATATAC
ACCACCAGACATTCTTGTGCCGATATACTTCCGATTTAGTAGCCAACACTTCTTCCTACACTGTA
ATCCGAACCCCTCTGTAACCCATACCCCCGTCACATCACATCTCT
Right flanking sequence: Indices 141203 -- 141702
CTTCTCCGCCTCTTATCACCTCTTTTCACTTGCCATCAGTCTCACGTGCCTTATCCGCGAACGAG
ACGACGAAGCCACCTATGGAGTACTTACTCGGAATCGGGTATCTCCACCACACCAATGAGTTGAT
CAGCAACTTGCGGCACCAGATCGATGTCGACCCGTCCCCCAGGCTGCAGCTCCACCTCGATTTGC
TCGTGCGTGACTTTGAGGTCGTCCAGGACTACGGGATCCGCCCGTACTTGGCCAGTCTCGACCGC
GACGACGCAGTGGCGGTGCTTGCGAGTGGCCTTGAGCCCCCGCTGCCCCGTAAAACCGAAGAGAT
CATTGACGACATCGAGCGTGCTGGCACCAAACGCCGTCGCCGGCTGTCCCACGAACAGGCGGTGG
CGCGAGACGAGGCTGCCCGGGTCAAAACAAGGGACAACCAGCTCGGAGAGGTGGTGTATCCCATG
GTATATGCGGCTGCGGGGCTGGACTACGCGCAGATGCTGGCTGCC
Found at i:142783 original size:24 final size:24
Alignment explanation
Indices: 142739--142784 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
142729 CCCACGGAGC
* *
142739 CCGCAGCGGCCTCGGCTGCCGCCA
1 CCGCAGCAGCCTCGGCAGCCGCCA
142763 CCGCAGCAGCACT-GGCAGCCGC
1 CCGCAGCAGC-CTCGGCAGCCGC
142785 ACTGGCAGCC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 17 0.89
25 2 0.11
ACGTcount: A:0.13, C:0.48, G:0.33, T:0.07
Consensus pattern (24 bp):
CCGCAGCAGCCTCGGCAGCCGCCA
Left flanking sequence: Indices 142239 -- 142738
GTTGAGCGACGAGTCGGTGGCCACCTACGTCGAGCTGCGGCTCAACCAGGTGATGCCCCAGTTCA
TCCACCGGTTGTGCTCGGCCATCGCCCTCACCGAGCGTCGGGCTCTTCAGCAGAAGGAGCCTCCC
GAGACGATTCGCCAGGTGGTATCGGACGTGCGTCGCATCTTGGCCAAGCTCCGAGCCGAGGTGGC
CGAGCTGGACGACGAGCGCGAGCGCTGTTTCACCTACACCCCGATGCTCCGCGGAGGGCCCGCTC
CTGGGCCCCAGCCAGCACGCACGCTGGCTCTCCGCGACACGGCCGAGCGTGCCAACCGCCAGCGA
CCCACAATTCTCACCCAGGAGGTGAGTCAGGACATCATGTCTGGTGCCACGGTCACCGGGTTCGA
CGGGTTCGCCGTGGGCACCGCGTCGCCGTTTGACCGGATCATTCGCCGGGAAAACGCCACCACCG
CCACCTCCAACACTACCGCTACTGCACCAGCACCGCCCACGGAGC
Right flanking sequence: Indices 142785 -- 143284
ACTGGCAGCCACCCAGGTGCTGGGGCTGGGCTTTGGCCACAACAACCGGCTGAGCCCCCGTGCCA
ACGTCCTGACCGCGAGTCCGCCCACTGTGGGATACAGTGCCACCACCACCGGGGCCACCACGGGC
CCTGAGGCCACAGGGACGCGTGATGACGATGTTCCCACTCCTACTCTCCGGGCCCGTCCCACACG
GCTGATTCGCCAGTTTTTCAACGACTTTGGCGAGATGGTGGAGGAGCGTCGTTCAGTGGCCACCG
ACGACGAGGGCCGTGGTCGTCCCGAGAACGTTATTTCCGACGTCATTCGCGGGGTATTCTCCCAG
TTGGGTCCGCCGAGCTCGATCCTGATTCTGGGCAACCCACGCGAGGCCCGCGCCCGGCTGGAGCC
CCACACCGAGCGCCCGTCGCAGCTGACACACACTCCCGTGCACCTGACCAACACTCTGGGCTCGG
CCACCATGGCGAGCACCCCAGGCCGCGGCTCGACGACGGCCCCGG
Found at i:142786 original size:12 final size:12
Alignment explanation
Indices: 142765--142794 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
142755 TGCCGCCACC
*
142765 GCAGCAGCACTG
1 GCAGCCGCACTG
142777 GCAGCCGCACTG
1 GCAGCCGCACTG
142789 GCAGCC
1 GCAGCC
142795 ACCCAGGTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.20, C:0.40, G:0.33, T:0.07
Consensus pattern (12 bp):
GCAGCCGCACTG
Left flanking sequence: Indices 142265 -- 142764
ACGTCGAGCTGCGGCTCAACCAGGTGATGCCCCAGTTCATCCACCGGTTGTGCTCGGCCATCGCC
CTCACCGAGCGTCGGGCTCTTCAGCAGAAGGAGCCTCCCGAGACGATTCGCCAGGTGGTATCGGA
CGTGCGTCGCATCTTGGCCAAGCTCCGAGCCGAGGTGGCCGAGCTGGACGACGAGCGCGAGCGCT
GTTTCACCTACACCCCGATGCTCCGCGGAGGGCCCGCTCCTGGGCCCCAGCCAGCACGCACGCTG
GCTCTCCGCGACACGGCCGAGCGTGCCAACCGCCAGCGACCCACAATTCTCACCCAGGAGGTGAG
TCAGGACATCATGTCTGGTGCCACGGTCACCGGGTTCGACGGGTTCGCCGTGGGCACCGCGTCGC
CGTTTGACCGGATCATTCGCCGGGAAAACGCCACCACCGCCACCTCCAACACTACCGCTACTGCA
CCAGCACCGCCCACGGAGCCCGCAGCGGCCTCGGCTGCCGCCACC
Right flanking sequence: Indices 142795 -- 143294
ACCCAGGTGCTGGGGCTGGGCTTTGGCCACAACAACCGGCTGAGCCCCCGTGCCAACGTCCTGAC
CGCGAGTCCGCCCACTGTGGGATACAGTGCCACCACCACCGGGGCCACCACGGGCCCTGAGGCCA
CAGGGACGCGTGATGACGATGTTCCCACTCCTACTCTCCGGGCCCGTCCCACACGGCTGATTCGC
CAGTTTTTCAACGACTTTGGCGAGATGGTGGAGGAGCGTCGTTCAGTGGCCACCGACGACGAGGG
CCGTGGTCGTCCCGAGAACGTTATTTCCGACGTCATTCGCGGGGTATTCTCCCAGTTGGGTCCGC
CGAGCTCGATCCTGATTCTGGGCAACCCACGCGAGGCCCGCGCCCGGCTGGAGCCCCACACCGAG
CGCCCGTCGCAGCTGACACACACTCCCGTGCACCTGACCAACACTCTGGGCTCGGCCACCATGGC
GAGCACCCCAGGCCGCGGCTCGACGACGGCCCCGGCGTCCACCCA
Found at i:143222 original size:21 final size:22
Alignment explanation
Indices: 143187--143230 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
143177 ACACCGAGCG
*
143187 CCCGTCGCAGCTGA-CACACACT
1 CCCGTCGCACCTGACCA-ACACT
143209 CCCGT-GCACCTGACCAACACT
1 CCCGTCGCACCTGACCAACACT
143230 C
1 C
143231 TGGGCTCGGC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.23, C:0.48, G:0.16, T:0.14
Consensus pattern (22 bp):
CCCGTCGCACCTGACCAACACT
Left flanking sequence: Indices 142687 -- 143186
ACCACCGCCACCTCCAACACTACCGCTACTGCACCAGCACCGCCCACGGAGCCCGCAGCGGCCTC
GGCTGCCGCCACCGCAGCAGCACTGGCAGCCGCACTGGCAGCCACCCAGGTGCTGGGGCTGGGCT
TTGGCCACAACAACCGGCTGAGCCCCCGTGCCAACGTCCTGACCGCGAGTCCGCCCACTGTGGGA
TACAGTGCCACCACCACCGGGGCCACCACGGGCCCTGAGGCCACAGGGACGCGTGATGACGATGT
TCCCACTCCTACTCTCCGGGCCCGTCCCACACGGCTGATTCGCCAGTTTTTCAACGACTTTGGCG
AGATGGTGGAGGAGCGTCGTTCAGTGGCCACCGACGACGAGGGCCGTGGTCGTCCCGAGAACGTT
ATTTCCGACGTCATTCGCGGGGTATTCTCCCAGTTGGGTCCGCCGAGCTCGATCCTGATTCTGGG
CAACCCACGCGAGGCCCGCGCCCGGCTGGAGCCCCACACCGAGCG
Right flanking sequence: Indices 143231 -- 143730
TGGGCTCGGCCACCATGGCGAGCACCCCAGGCCGCGGCTCGACGACGGCCCCGGCGTCCACCCAG
TCGCCCGCAGGAGGCATGTGGCGCCACGAGGAGGAAGATGAACAGCCCGACGCCGACGTCGACAT
GCCCGGTCCCGACGACTTGGACTAGGCTCTGCATAGGTATATAGACATAAGATTGCATTTGTGAT
AAGAGGCAGTAGGGAAAGATGGCGGTGGTATGGGCATTTATAGCTATGACCGCTTACAGCTAGAT
CTCAAATAGCCATTTGCAACCACTGCCGTATGCATTTTGCAACCAGTTGCATGCAGTACCATTTA
TAACTGTAACGGATCATGGACGGTTAAGCCGTGTTCTGCTACTTTCCCACCAAACTATCCCCGAC
TCTTTTAACCATATTATTGTCTATAATGCTACCGGGTCACCATGAAAATCTCGTCCAACGCCTTC
GCGTCCATCACCGACGCCCGTTTCGCGGCGATCCACTTGGAGCGT
Found at i:143875 original size:9 final size:9
Alignment explanation
Indices: 143838--143953 Score: 126
Period size: 9 Copynumber: 12.6 Consensus size: 9
143828 CGAGTTTGGC
143838 CTCCTTCTT
1 CTCCTTCTT
**
143847 AGCCTTCTT
1 CTCCTTCTT
143856 CTCCTCTTTCTT
1 CT-C-C-TTCTT
*
143868 GTCCTTCTT
1 CTCCTTCTT
* *
143877 GTCCTCCTT
1 CTCCTTCTT
143886 GCT-CTTCTT
1 -CTCCTTCTT
143895 CTCCTTCTT
1 CTCCTTCTT
*
143904 TTCCTTCTT
1 CTCCTTCTT
143913 CTCCTTCTT
1 CTCCTTCTT
143922 CTCCTTCTT
1 CTCCTTCTT
143931 CTCCTTCTT
1 CTCCTTCTT
*
143940 GTCCTTCTT
1 CTCCTTCTT
143949 CTCCT
1 CTCCT
143954 CCTTTCTCGC
Statistics
Matches: 90, Mismatches: 12, Indels: 10
0.80 0.11 0.09
Matches are distributed among these distances:
8 2 0.02
9 77 0.86
10 3 0.03
11 2 0.02
12 6 0.07
ACGTcount: A:0.01, C:0.41, G:0.04, T:0.54
Consensus pattern (9 bp):
CTCCTTCTT
Left flanking sequence: Indices 143338 -- 143837
CAGCCCGACGCCGACGTCGACATGCCCGGTCCCGACGACTTGGACTAGGCTCTGCATAGGTATAT
AGACATAAGATTGCATTTGTGATAAGAGGCAGTAGGGAAAGATGGCGGTGGTATGGGCATTTATA
GCTATGACCGCTTACAGCTAGATCTCAAATAGCCATTTGCAACCACTGCCGTATGCATTTTGCAA
CCAGTTGCATGCAGTACCATTTATAACTGTAACGGATCATGGACGGTTAAGCCGTGTTCTGCTAC
TTTCCCACCAAACTATCCCCGACTCTTTTAACCATATTATTGTCTATAATGCTACCGGGTCACCA
TGAAAATCTCGTCCAACGCCTTCGCGTCCATCACCGACGCCCGTTTCGCGGCGATCCACTTGGAG
CGTGCACCCAACCGGGCCAGCACGGGCGTCAGTTCACGCGACGCCGGGGTCAGTTCGCGCGAGGC
AGTAGCCAGTTTGTCCTTCTTGGCGAGCTTCTTTGCGAGTTTGGC
Right flanking sequence: Indices 143954 -- 144453
CCTTTCTCGCTCGCTTGGACTCCTTCTTCAGCTCGTCGTCGCGTTTACGCTTCTTTTCCGGTGCT
GGCGAGGCGGTCGCAGACGGAGTGGCGGGCTCAAGCACAGCCACCTCCTCTGTCGGCTTCAACTG
GCGGTCCAGACTGTTCCAGGTGCTCTGTAGCGTGGGGCCCTTGACAAAGTGCATACCCCACTTGC
CGTTAATGATACGCTCCTTGCGCTGGCGCTCCAACTCGTTGGACACTTGCTCCTCTTTGCCGTTA
AGCCGGCCCAAAATCTGCTGGAAAACGTCGAGCCCGGCACTGTCGTCGTCCATGCCGTCGCCGCC
GTTCTTCTTTTTGCGCAACTTGGCACCCAAACCCAAGTTATCGTCCTTGATCAGCACCTTGACGT
GGGTGGTGACGGCGCCCAGCACCAACCCGAGCCCCTGGCCCTGTTTCCACCCCATCTTTTCCATG
TATTGCACGCCAAACCGCAGGGCATCGTTCAGCCACGACGTGTTT
Found at i:145976 original size:8 final size:8
Alignment explanation
Indices: 145963--145997 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
145953 GATGTGTTCT
*
145963 AGAAATTG
1 AGAAATAG
145971 AGAAATAG
1 AGAAATAG
145979 AGAAATAG
1 AGAAATAG
145987 AGAAATAG
1 AGAAATAG
145995 AGA
1 AGA
145998 TTGCTAGAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.60, C:0.00, G:0.26, T:0.14
Consensus pattern (8 bp):
AGAAATAG
Left flanking sequence: Indices 145463 -- 145962
TCAACCTGAACCGGATTATTGAGGGCTACTTGAAGGACTACCACGCGCAGTTGTTGGGGCTGGTG
TTGTCTTACGACGAGGCGTTTGTGCTGGATGACATTACTATGGCGGCTGCTTTGTGGCGTAACGT
GTTCAACGGTGACCCCAACGTCGACATGCGCCACCTTGAGGCCCTCACCGGGTACGTGCGCGGCC
AGTTGTACGTGTTGGACCAGATGTCGGACCGCGAGTTTGGCTTTGGCCAGTTCCGGTTTGTGCCG
CCCAACGAGGTGGTGAAGCCGTTGACGCTGTCCCAGCGGGCGGAGATCCGCGAGCGTGTCCACAA
CGAGTTTGCCAAGATGGACTTGCCGTCGCAGCGGTCGCAGTTGTCGTTGGACGAGTAAATGTATA
TAGTAATGGGACATTGGTAGAAGAGCTGGGATGGAGGCGGCAATGGAACGCAGTGTGGGGTATGA
TCACCACAGGGGAGGCTAGAATTTGGAAAGAGACTGATGTGTTCT
Right flanking sequence: Indices 145998 -- 146497
TTGCTAGAACACAATATAGAGGGACCGAAGGACAGTAAAAGAGACGAACATTGCTAACAAGCCGT
GATACTAAAAATGTGATACTAACAAAAAGGCTTGGACAATAGAACAATGTGTCACCTGATGATCT
CGCATCGGTACGATTTACTTCACGTCGTCTAACCATTCAGTGCTATTCGTACTACTCATTCAGTT
CGTGCTATTCGTGGTCGTGCATTCATGCTATCATATGTCATTACCTAAAGCTTGGTCTCCTTGCG
CCAGTCGCGTCCCTGGGTCCCCCGGATCATCACGTTCATGATCGCATAGTCCTTCCCCTCAACGG
CCCCGTCAAACTTGTTCCCAAGCACAATGTCCTCGACCATCCAAAAGTCAAAGCGTTCATAAATA
GGAATGTTCGCGGGCGACAGCGACTCCAAATAGCAAATGGTATCGGGCTCGGCATCAATAAAGTT
GTCAAACATGTAGGTAAACAACTTGCGCAAGTTACCCTTGCCCCT
Found at i:149126 original size:12 final size:12
Alignment explanation
Indices: 149091--149141 Score: 75
Period size: 12 Copynumber: 4.2 Consensus size: 12
149081 TTGAGTGTCC
149091 CGTTGGCGGTCT
1 CGTTGGCGGTCT
149103 CGTTGGCGGTCT
1 CGTTGGCGGTCT
*
149115 CGTTGGCTGTCT
1 CGTTGGCGGTCT
* *
149127 CGTTTGCAGTCT
1 CGTTGGCGGTCT
149139 CGT
1 CGT
149142 CCGCGTCGTG
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 36 1.00
ACGTcount: A:0.02, C:0.25, G:0.35, T:0.37
Consensus pattern (12 bp):
CGTTGGCGGTCT
Left flanking sequence: Indices 148591 -- 149090
CTCGAGGCAGTACTCGATGTGGGCTCGCACCACTTTGCCGGTGCTGAGCAAGTCAATGATGATCA
TGAGGATGTGGACCCGGAGCGTGGGCAGCACCAGCTTGTACCAGCGCTCCAAAATCTTCAGCGGA
GTGGGGGTGGGGTCGTCAGCCGGAGTAAGCACGGAAAACGCCTCTTCGGCCGTGGTCTTGCACTG
AGGGATGTGCTCAACCAACAGCAACACCCCGAGCACAATGCACTGCCAGTTGCCGTCCTTGAAGT
TGCGCTTTTGCAAGCGCTCCCACCACGGGGTGTTGCGGTAGTTAAGCACATGCTGGAGCGGTGTC
GGTTCCTCCTCGTCTTCGGAGGCCAGGGCGGGAGCTGGCAGCTCGGTGCGGGCACGTTTCAGCGG
CGGGCGGCCGCGGCCACGCCCGTTGCGGGTTCGTTTGCCCGAGGGGGCCACTTCGTCCTCGGAGT
CCGACACCTCCACCACGTGACCGTTGGCGTCGCCGTTGAGTGTCC
Right flanking sequence: Indices 149142 -- 149641
CCGCGTCGTGATTGTCTTCCTTTTCCTCCTTATCGTCCTTATCGTCCTTTTCTTCGTCCTTTTCT
TCTTTGTCTTCCTCCTCCTCGTCCTCACTCTCCTCCTCCGCGGGCACGGTCACAAGCAAGTCCAT
CTCCTTCTTGGGAGCGTTCAGAGCCACCGCGCCCAACACCGCACAGAAGATCTCGTCCACAAGCA
CGCAGTTGCCGTGCTCGTCGTAGTCGTCCCAGTCCCACCGCATAGCCACCACAAAGTCGTCAAAC
GTGAACGCATCGATTTTGAGCGCAACGTGGAAAATGTTGATGAACGACCAGCACCGGAGGGCGTC
AGCAATCACGTCGGCAAACACCTTTTCGCGCTTGCCCTCGGGACGGACGTCGCCGGCGGGTGCTG
TGAGAGTCAAATCCTCCACCACCTGCTTGGCACTGCCCACATGGTCCAAGTTCTTGGGCTTTCTG
TCCTTGTCGCGTCGTCTGCCGTCGGGAACGGGGGTTCCACCCGCA
Found at i:149198 original size:12 final size:12
Alignment explanation
Indices: 149183--149208 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
149173 ATCGTCCTTA
149183 TCGTCCTTTTCT
1 TCGTCCTTTTCT
149195 TCGTCCTTTTCT
1 TCGTCCTTTTCT
149207 TC
1 TC
149209 TTTGTCTTCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.35, G:0.08, T:0.58
Consensus pattern (12 bp):
TCGTCCTTTTCT
Left flanking sequence: Indices 148683 -- 149182
GCACCAGCTTGTACCAGCGCTCCAAAATCTTCAGCGGAGTGGGGGTGGGGTCGTCAGCCGGAGTA
AGCACGGAAAACGCCTCTTCGGCCGTGGTCTTGCACTGAGGGATGTGCTCAACCAACAGCAACAC
CCCGAGCACAATGCACTGCCAGTTGCCGTCCTTGAAGTTGCGCTTTTGCAAGCGCTCCCACCACG
GGGTGTTGCGGTAGTTAAGCACATGCTGGAGCGGTGTCGGTTCCTCCTCGTCTTCGGAGGCCAGG
GCGGGAGCTGGCAGCTCGGTGCGGGCACGTTTCAGCGGCGGGCGGCCGCGGCCACGCCCGTTGCG
GGTTCGTTTGCCCGAGGGGGCCACTTCGTCCTCGGAGTCCGACACCTCCACCACGTGACCGTTGG
CGTCGCCGTTGAGTGTCCCGTTGGCGGTCTCGTTGGCGGTCTCGTTGGCTGTCTCGTTTGCAGTC
TCGTCCGCGTCGTGATTGTCTTCCTTTTCCTCCTTATCGTCCTTA
Right flanking sequence: Indices 149209 -- 149708
TTTGTCTTCCTCCTCCTCGTCCTCACTCTCCTCCTCCGCGGGCACGGTCACAAGCAAGTCCATCT
CCTTCTTGGGAGCGTTCAGAGCCACCGCGCCCAACACCGCACAGAAGATCTCGTCCACAAGCACG
CAGTTGCCGTGCTCGTCGTAGTCGTCCCAGTCCCACCGCATAGCCACCACAAAGTCGTCAAACGT
GAACGCATCGATTTTGAGCGCAACGTGGAAAATGTTGATGAACGACCAGCACCGGAGGGCGTCAG
CAATCACGTCGGCAAACACCTTTTCGCGCTTGCCCTCGGGACGGACGTCGCCGGCGGGTGCTGTG
AGAGTCAAATCCTCCACCACCTGCTTGGCACTGCCCACATGGTCCAAGTTCTTGGGCTTTCTGTC
CTTGTCGCGTCGTCTGCCGTCGGGAACGGGGGTTCCACCCGCAGGAGTCGCGGGAACGGGTACTC
CGGGTGTCAGCTCAGCGTACTGCAACAAGTCTTCCGGGTAGTCCT
Found at i:184633 original size:23 final size:24
Alignment explanation
Indices: 184606--184651 Score: 76
Period size: 23 Copynumber: 1.9 Consensus size: 24
184596 TGTGGGGTAG
184606 GGTGGGGAGTG-GAAGTGAGAGGT
1 GGTGGGGAGTGTGAAGTGAGAGGT
184629 GGTGGGGAGTGTTGAAGTGAGAG
1 GGTGGGGAGTG-TGAAGTGAGAG
184652 AGGCTGGGTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 11 0.52
25 10 0.48
ACGTcount: A:0.22, C:0.00, G:0.59, T:0.20
Consensus pattern (24 bp):
GGTGGGGAGTGTGAAGTGAGAGGT
Left flanking sequence: Indices 184106 -- 184605
CGCTGCCAAGTGTGCGAATATCAGTCGAGATGCAGGGCGGGCCCGTACGATCACGGTGGGCGGGG
GGTGGTGCCGGTATGCTACGGGCGGGGTGGTTACGAGGGCGGGGTCGCCTACGGGTTTTGTAGCG
GTGGTTCCCAGGTAGTGCTGTCGGGCACCGGGTGAGCTCACCGGGTGGGCTCGTCAAATGAAACG
CATTTTTTGTTTACATGGTGCCCGATTGGGACAAAAGGAAGGAGGGCCACGGGTGGGCCAGGGGT
GCCCGCAGCAAGGGCCAGGCACCGCCAGCTGGTGGCCCGGGGTCCGGGCGACGCTCTCCCTGCAC
GCCTTCCCGGTTGCGGCAACCCAGCCGTGCCTGACCCACCCATTATAGCCCCTATCGGCTGCGGG
GCTGCTAACCGCACCGTTGCCACACGACAATAGCCAGTCACTCGCGTCATCGCCTGGCATTTTCC
GAGCCGCGCGAGCTAATGGGACCTAGCGATGGGTGTGTGGGGTAG
Right flanking sequence: Indices 184652 -- 185151
AGGCTGGGTAGGGGTATGGTTGAGAGTGTAGTGGAGAGAATAGTAGAGGTTTTTGGGCGATTATA
GTGGGGATTAGTAAAGATAGCAGACTACTTGAGATGAGATGAGTAATGATTATTGTGTCCAGACG
TGTCCAAACCATCAGTACACCTGCCGATATCTTCAGGTGATCACACGAACACTGGCAGACTGTGT
GACTAGTGGCTACGTGACCGCCCTGTGACGCTACGCGACCTGTGACGCTACGCGATTGTGACGAT
ACGCGATTGTGACACACCCGATAAACCCGTTCATTAATCAATTACTACACTCCGTCTAATACTTC
GACTTGTCCAGCACCAACTGCAAGAGCAAGTCCTGCAACTGGCGACGGCCCTTGGCCGCCTTCCA
GATTTTGTGGTTCAGGTTCTCGGCAATCACCCACTCGATGCAGTGCGAACTCAACTTGGAGAGCT
CGCGCTGCCACTTGCCCCAGTTCAACGACGTCTTGATCATGTAGT
Found at i:184659 original size:25 final size:23
Alignment explanation
Indices: 184608--184659 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 23
184598 TGGGGTAGGG
*
184608 TGGGGAGTGGAAGTGAGAGGTGG
1 TGGGGAGTGGAAGTGAGAGGTGC
184631 TGGGGAGTGTTGAAGTGAGAGAG-GC
1 TGGGGAGTG--GAAGTGAGAG-GTGC
184656 TGGG
1 TGGG
184660 TAGGGGTATG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
23 9 0.36
25 15 0.60
26 1 0.04
ACGTcount: A:0.21, C:0.02, G:0.58, T:0.19
Consensus pattern (23 bp):
TGGGGAGTGGAAGTGAGAGGTGC
Left flanking sequence: Indices 184108 -- 184607
CTGCCAAGTGTGCGAATATCAGTCGAGATGCAGGGCGGGCCCGTACGATCACGGTGGGCGGGGGG
TGGTGCCGGTATGCTACGGGCGGGGTGGTTACGAGGGCGGGGTCGCCTACGGGTTTTGTAGCGGT
GGTTCCCAGGTAGTGCTGTCGGGCACCGGGTGAGCTCACCGGGTGGGCTCGTCAAATGAAACGCA
TTTTTTGTTTACATGGTGCCCGATTGGGACAAAAGGAAGGAGGGCCACGGGTGGGCCAGGGGTGC
CCGCAGCAAGGGCCAGGCACCGCCAGCTGGTGGCCCGGGGTCCGGGCGACGCTCTCCCTGCACGC
CTTCCCGGTTGCGGCAACCCAGCCGTGCCTGACCCACCCATTATAGCCCCTATCGGCTGCGGGGC
TGCTAACCGCACCGTTGCCACACGACAATAGCCAGTCACTCGCGTCATCGCCTGGCATTTTCCGA
GCCGCGCGAGCTAATGGGACCTAGCGATGGGTGTGTGGGGTAGGG
Right flanking sequence: Indices 184660 -- 185159
TAGGGGTATGGTTGAGAGTGTAGTGGAGAGAATAGTAGAGGTTTTTGGGCGATTATAGTGGGGAT
TAGTAAAGATAGCAGACTACTTGAGATGAGATGAGTAATGATTATTGTGTCCAGACGTGTCCAAA
CCATCAGTACACCTGCCGATATCTTCAGGTGATCACACGAACACTGGCAGACTGTGTGACTAGTG
GCTACGTGACCGCCCTGTGACGCTACGCGACCTGTGACGCTACGCGATTGTGACGATACGCGATT
GTGACACACCCGATAAACCCGTTCATTAATCAATTACTACACTCCGTCTAATACTTCGACTTGTC
CAGCACCAACTGCAAGAGCAAGTCCTGCAACTGGCGACGGCCCTTGGCCGCCTTCCAGATTTTGT
GGTTCAGGTTCTCGGCAATCACCCACTCGATGCAGTGCGAACTCAACTTGGAGAGCTCGCGCTGC
CACTTGCCCCAGTTCAACGACGTCTTGATCATGTAGTCCGACGAG
Found at i:184890 original size:17 final size:17
Alignment explanation
Indices: 184868--184917 Score: 75
Period size: 17 Copynumber: 3.0 Consensus size: 17
184858 ACGTGACCGC
184868 CCTGTGACGCTACGCGA
1 CCTGTGACGCTACGCGA
184885 CCTGTGACGCTACGCGA
1 CCTGTGACGCTACGCGA
* *
184902 -TTGTGACGATACGCGA
1 CCTGTGACGCTACGCGA
184918 TTGTGACACA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
16 14 0.45
17 17 0.55
ACGTcount: A:0.20, C:0.30, G:0.30, T:0.20
Consensus pattern (17 bp):
CCTGTGACGCTACGCGA
Left flanking sequence: Indices 184368 -- 184867
CCGCAGCAAGGGCCAGGCACCGCCAGCTGGTGGCCCGGGGTCCGGGCGACGCTCTCCCTGCACGC
CTTCCCGGTTGCGGCAACCCAGCCGTGCCTGACCCACCCATTATAGCCCCTATCGGCTGCGGGGC
TGCTAACCGCACCGTTGCCACACGACAATAGCCAGTCACTCGCGTCATCGCCTGGCATTTTCCGA
GCCGCGCGAGCTAATGGGACCTAGCGATGGGTGTGTGGGGTAGGGTGGGGAGTGGAAGTGAGAGG
TGGTGGGGAGTGTTGAAGTGAGAGAGGCTGGGTAGGGGTATGGTTGAGAGTGTAGTGGAGAGAAT
AGTAGAGGTTTTTGGGCGATTATAGTGGGGATTAGTAAAGATAGCAGACTACTTGAGATGAGATG
AGTAATGATTATTGTGTCCAGACGTGTCCAAACCATCAGTACACCTGCCGATATCTTCAGGTGAT
CACACGAACACTGGCAGACTGTGTGACTAGTGGCTACGTGACCGC
Right flanking sequence: Indices 184918 -- 185417
TTGTGACACACCCGATAAACCCGTTCATTAATCAATTACTACACTCCGTCTAATACTTCGACTTG
TCCAGCACCAACTGCAAGAGCAAGTCCTGCAACTGGCGACGGCCCTTGGCCGCCTTCCAGATTTT
GTGGTTCAGGTTCTCGGCAATCACCCACTCGATGCAGTGCGAACTCAACTTGGAGAGCTCGCGCT
GCCACTTGCCCCAGTTCAACGACGTCTTGATCATGTAGTCCGACGAGATCACCCCCAACGGCACG
TCGCGGAGATCGGCCCCGCGCACCTCGTTGTACGAGAGAATGCCCAGCGTCAACTGCTCCTGCAA
CCGCGCTCTAATGTACTTCAGACTCCACCGCATGTCGCGGCCATAAATCCGGTTCTTGCTCGAAT
AACTCCGCGGGTGGAACAACCAGTGGAACTCGGGCACAACGCCAAACGGCGAGAAAATGCCCCGG
AGCCACAACCGGAACCCGGTCAAGTTGTTCATGAACTCCAAGATC
Found at i:184908 original size:16 final size:16
Alignment explanation
Indices: 184870--184924 Score: 83
Period size: 16 Copynumber: 3.4 Consensus size: 16
184860 GTGACCGCCC
*
184870 TGTGACGCTACGCGACC
1 TGTGACGCTACGCGA-T
184887 TGTGACGCTACGCGAT
1 TGTGACGCTACGCGAT
*
184903 TGTGACGATACGCGAT
1 TGTGACGCTACGCGAT
184919 TGTGAC
1 TGTGAC
184925 ACACCCGATA
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
16 21 0.58
17 15 0.42
ACGTcount: A:0.20, C:0.25, G:0.31, T:0.24
Consensus pattern (16 bp):
TGTGACGCTACGCGAT
Left flanking sequence: Indices 184370 -- 184869
GCAGCAAGGGCCAGGCACCGCCAGCTGGTGGCCCGGGGTCCGGGCGACGCTCTCCCTGCACGCCT
TCCCGGTTGCGGCAACCCAGCCGTGCCTGACCCACCCATTATAGCCCCTATCGGCTGCGGGGCTG
CTAACCGCACCGTTGCCACACGACAATAGCCAGTCACTCGCGTCATCGCCTGGCATTTTCCGAGC
CGCGCGAGCTAATGGGACCTAGCGATGGGTGTGTGGGGTAGGGTGGGGAGTGGAAGTGAGAGGTG
GTGGGGAGTGTTGAAGTGAGAGAGGCTGGGTAGGGGTATGGTTGAGAGTGTAGTGGAGAGAATAG
TAGAGGTTTTTGGGCGATTATAGTGGGGATTAGTAAAGATAGCAGACTACTTGAGATGAGATGAG
TAATGATTATTGTGTCCAGACGTGTCCAAACCATCAGTACACCTGCCGATATCTTCAGGTGATCA
CACGAACACTGGCAGACTGTGTGACTAGTGGCTACGTGACCGCCC
Right flanking sequence: Indices 184925 -- 185424
ACACCCGATAAACCCGTTCATTAATCAATTACTACACTCCGTCTAATACTTCGACTTGTCCAGCA
CCAACTGCAAGAGCAAGTCCTGCAACTGGCGACGGCCCTTGGCCGCCTTCCAGATTTTGTGGTTC
AGGTTCTCGGCAATCACCCACTCGATGCAGTGCGAACTCAACTTGGAGAGCTCGCGCTGCCACTT
GCCCCAGTTCAACGACGTCTTGATCATGTAGTCCGACGAGATCACCCCCAACGGCACGTCGCGGA
GATCGGCCCCGCGCACCTCGTTGTACGAGAGAATGCCCAGCGTCAACTGCTCCTGCAACCGCGCT
CTAATGTACTTCAGACTCCACCGCATGTCGCGGCCATAAATCCGGTTCTTGCTCGAATAACTCCG
CGGGTGGAACAACCAGTGGAACTCGGGCACAACGCCAAACGGCGAGAAAATGCCCCGGAGCCACA
ACCGGAACCCGGTCAAGTTGTTCATGAACTCCAAGATCCCCTTGA
Found at i:188330 original size:14 final size:14
Alignment explanation
Indices: 188311--188345 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
188301 TGGATGGGTG
188311 CACCTACCATGATA
1 CACCTACCATGATA
188325 CACCTACCATGATA
1 CACCTACCATGATA
188339 CACCTAC
1 CACCTAC
188346 AACATACACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.34, C:0.40, G:0.06, T:0.20
Consensus pattern (14 bp):
CACCTACCATGATA
Left flanking sequence: Indices 187811 -- 188310
CAGAAGCAGATCCACAAGGACCAGGACCACGAGGTGGAGCAGTTACGCGAGATCGTCGCTCGCCA
GCGGCAATTGGGCCAGGCGATCGGGGACGAGGTCGACTCGCAGAACGAGATGATGGACCAGTTCA
GCGAGGAGATCGACCGCACCAAGGACAAGTTGGCGGGCGCCCGCGAGCGAGCGAAAAAGTTTACA
TAGCATTATAGAAAGAAAGAGGGATTGAAGCTGGGTTTAACCGTACTTGAGTATGGGTCTGCCCT
GATTGTTGCAGCCACGGCACGTGATCCGGGTAACTGGGCGCGTATAAAAGCCATTGCGAAAAAGT
TTATTGTCAACGACAACCGTATGTATCCACGAATAATTCAGATGATGTGAACACTTTGCCTTACC
GAAAGTCATGAGGATTCAACAAGTTTACACCAAGATCTACGCTGATGTCTTATCCAACGATTTAC
TAACAGAAAAGAATAGGAAATATCGGATGAAGTAATGGATGGGTG
Right flanking sequence: Indices 188346 -- 188845
AACATACACAGCTCTAGCATGCGTCACTACCCTGGCTCCACGCGTCACTCTTCTCACATCCCACG
TTTCTCCCATTCCCAATGAGCCCCTTTCCTTTCTATCTCTATTATTGATCTATGCATCTAAGTCT
GTAAACTCCGTGGTCAACATGATCACCAGGTCGCCCAGCACCGACGAGCGCGCGGTGCGCGCCAA
CGGGTCGTCTAGAACCTCCTTTTGGTGGCGCTTGATCTCTTCGCCCCAGAGCTTGATCCCAGCCT
CGATGTCCTCGGGCTCAAGGTACAGAATCAGCAACCGCACACAGTTCTTGCCCCAGCCCACGGGA
TCGCCCACCACCTCGAAGTTAGCCCCCAGGGCAAGCACCACCCCGTGCTTCTCGAGCGCAGTAAC
AACGGACTGGTGGTTGTCCACCCCCTCAACACGCACCCACAAAAAGTAGCCACCGTCGCCGCCCC
AGCTCTGTGTTCCAGCAGGCAAGTACTTCGCAATGGCGTCCTTGG
Found at i:207698 original size:20 final size:20
Alignment explanation
Indices: 207673--207713 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
207663 ATTTATAACT
207673 CATATGATCCAAGCGATCCA
1 CATATGATCCAAGCGATCCA
*
207693 CATATGATCCAAGCGGTCCA
1 CATATGATCCAAGCGATCCA
207713 C
1 C
207714 TCATCTCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.32, C:0.32, G:0.17, T:0.20
Consensus pattern (20 bp):
CATATGATCCAAGCGATCCA
Left flanking sequence: Indices 207173 -- 207672
CTGCTCGGGATCGGCCACCGGGTGTACAAGGGCCGCCCGTGCTTGGACCACCGGTACTTGGACTG
GTGTATCAACGAGGGGTTCACCCAGTGTCTGGGACCCGTCCACGACGGCGACAACTTGGTGTGCT
GTCGAGCGGTGCAACCGAACCGGGTCCGCGAGCAGAACTTAGACCCGAGCAAGGTGTGGGTGGTT
TCCGCGGGTCCGCTGGGCCTTGTGAAGAACGTGAGCTTGTGGGCCTCGCAAAACGGACTCAATTT
CCACGAGGAGTCCTTCAGTGTTTAGCAATGCATATGGCGATTCGCCAATAGACGATCACACGAGT
TTTAGGGGAAGGCTCTACCGAGGAGTAGGTGTGGAGCATGGCTCTACATAAAATTCAGTTACTAC
ACGTATTAGTCTTTTTCTTTGCGACTAATGTAGACTCGGCTCTCATGCCCCTACTATTACAATGT
TTCTTAACTATACAGGGTGTTGGTAGCCAACATGCATTTATAACT
Right flanking sequence: Indices 207714 -- 208213
TCATCTCAACAGCCTGACGCGATCATTTGTGGGCGGCCCCAGGGCCGTCCGGGTGCCGTGGCACG
TAGAACTCCTTCTCCAAGTACTCGTCCTGGCGCAACTGGTTCTCCACCAACAACTGCTTCCGAAG
CTTGTATTTCGCCTCGTCCATGGTCCACGACATCGCCACCACGTTCCAGCACACCACGTACGCTA
CCTTGTACGCGGGACGGAAGAACCGGACGTTGTGGCCGTGGTTGTAGCGGTAGTTGAGGAACCAC
CCGGTGACGAGCCCGGCGAGCGTTCCTTGTAGCACCCCGCGCACGGCAGCGTGGGTCATCACCGA
CTGGTACTCCTCCACACGGCGATCCCGTGTCTCCTTGTTTGTTTCAAATGGCATGGTTCGGGCGC
AATGGCAAACTCCGATCACTGTCCGATAAGCGGCCCGAGCTACAAATCAGGGGTTTGAAAAGATG
CAAAACCCGCGAGTGAGCAAATTAGGGGACGAGGAAGGGAAGCAC
Found at i:220195 original size:11 final size:11
Alignment explanation
Indices: 220179--220208 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
220169 GTGGTCCGAG
220179 AACGGGCCCAA
1 AACGGGCCCAA
*
220190 AACGGGCCCTA
1 AACGGGCCCAA
220201 AACGGGCC
1 AACGGGCC
220209 GCCCAACTTG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.30, C:0.37, G:0.30, T:0.03
Consensus pattern (11 bp):
AACGGGCCCAA
Left flanking sequence: Indices 219679 -- 220178
CATCGGAATGGGGTTAGACGTCTTGTGAGCCACATCTACCAAGGCGGCGTGGCTTAAACCGTCGT
GTAATTGGCTTGACGGCTCGTATCAGGCGGTGGATCAACGACACCGGGACAATATCGCCACACCT
GTACCAGTGAGGGTCCCACAACAGTTTGGAGCCGAACCACCAGGCACGGCTGAAGCCATGGCCCT
GTTTCCGTGTTTGGCTTGGGCCGCCGGTGTGGCGGGGATACCGTCCTAGGAAGTGGCCGCCCCGA
TAACACCCTAGTTCGTTTTTGCACCGCCAACTACCCATTGTCCCAATGTCTCAATGTGGCTGCTG
CGACCCACGCCATAGTTTAGCACAGTGGCGACATGAACCCAATTGCGGAAAAGCCGACTTGGCAG
CGATGGCACCACATTCCGCACGCTAGCCAAAAGCTCGTCTGATCGGCCCTAACCGAAAACCACCG
TGTCCACCTTACGGTTCCACACTTCCAAATGCGGTGTGGTCCGAG
Right flanking sequence: Indices 220209 -- 220708
GCCCAACTTGAAACGCCGGGAGAACTACGAAAATGATCGCCACGAACACCGGTTACAAAATAGAA
CTCTAGGGACGGACGGTTACCCGTTATAGCAACCGCCACCGGAACATCGGTTGCTTCCACAATGA
AGCAATCTGGTCCACAGCAAACAATTGCACGGCAGTGGCGGTAAGGGGGGTTACACAATAAACTA
AAGACAAAGAATAGAGTCATCGACGCCCCCGTGGTCTCTACAACCTCGTCAGCCGTGTCGGTGAC
GTAGCCGTCAGACACTCCCGAAGCACCTGAAGACCCGTAGATTTACGTCACTTCTATTTTCCGCG
ATTATCGGGTGTGCGACAAAGTGCAATTTTTCATGGCGATTTCTACATACCACGTGACATCTCGC
TGGAGGGTAAACGCCACCAACGGGTCGCATGAGCTTAAGATACCCGCTGGTGGCTTGTAATTACT
GTTGTTTGACACCATTTTCTTCGTCTTCTCTGGAGCCCGCTTATC
Found at i:244162 original size:12 final size:12
Alignment explanation
Indices: 244147--244195 Score: 55
Period size: 12 Copynumber: 4.1 Consensus size: 12
244137 GCGCGGGCGA
*
244147 GCTGGTGGTGCT
1 GCTGGCGGTGCT
*
244159 GCTGGCAGTGCT
1 GCTGGCGGTGCT
244171 GCTGGCGGTGCT
1 GCTGGCGGTGCT
*
244183 AG-TGGTGGTGCT
1 -GCTGGCGGTGCT
244195 G
1 G
244196 GCAGCCGGGC
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
11 1 0.03
12 30 0.94
13 1 0.03
ACGTcount: A:0.04, C:0.18, G:0.49, T:0.29
Consensus pattern (12 bp):
GCTGGCGGTGCT
Left flanking sequence: Indices 243647 -- 244146
GTGTCGAAGTCGGAGGGCGTGAGGCCCACCAAGTGGCGGAGCACGCTCACGTAGGCGGGGTCGGG
CTTGGCCAAGTCCAACCGCCGGCGGTACGCCGCAAGCACCTGTTTGCAGAGGCCCTCGAACGCAG
CCACGCACTTCTCCGACATCGCCACCGGCGGAAGATCGTCCACGGGCACCACGAGGGTGTCCTGG
TGGTCGTACACCACGTGGGTGAACGTCTTGTCCGGGATCGCCGGCGGCGGCGACGTCTTGAAGAG
CTGGTAGTGGCTGACGTAGTCCACGCGCTGCGAGAGCGCCTGGTCCGCGATGTAGAACACCCCGG
GAGTGCAGCACGTGAGGTAGTGGAGCAACACGATGGCCCCCAGCCGTCGCTTCATCTCGTCGATG
TGCGCAAGCACGAGCTCGAGCTTGGCGATGGCGTACACGTGCTGGACCACCCGTGCGTCCTGCGA
CGTGAACTCGGGGCTGAAGTTGTACGCGGGCATGGGCGCGGGCGA
Right flanking sequence: Indices 244196 -- 244695
GCAGCCGGGCTGGCGGTGCTCAAGCTGTCCACGGACCCGTTGTCGGTGGGGGGGTCAATCTTCAC
CGACGGAAGGGTTTTTTCGTCGCCCGAGCCGGAGGCGCTGTCGGGCGGCGTGATCCCGTCGCAGA
CGTCGTCGACCTTGGTGGACGAGGTGGTGGTCAGCGACGGCAGCGCCAACAACAATCCGAGCGCG
TCGTCCATGGTCAAATGTAGCAGCAGCAACACGCCGGCCGCGTCTGTCTCGGAGTCGGACGCCTC
GGGCGAGGGGGTGTGCACAGGCTTAGCGCGGGGTTTCAGCGTGGAGTCCTTGGTGGACTCGGTGC
TTGCGTCCCCTGGTGGTTTGTGGTTCGCTTCGTCTGTGGTGAACCCGCTGGTGTCCTTTGTGGTG
TTGGCTTTGCCAGAGGCGCTATCGTCTTTAGACTTGGGTTTGTTTTCGGTAGAGCTAGCCTTGTT
GGTCTGCTTCGAGTCCTTCTTTGAGTCCACCTTTGAGTCGACCTT
Found at i:244742 original size:21 final size:22
Alignment explanation
Indices: 244706--244758 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
244696 CGGAGATTTC
244706 CCGTCCTCC-TCTGGGGACGTT
1 CCGTCCTCCTTCTGGGGACGTT
***
244727 CCGTCCTCCTTC-GGGGTTTTT
1 CCGTCCTCCTTCTGGGGACGTT
244748 CCGTCCTCCTT
1 CCGTCCTCCTT
244759 AGTATCCTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 26 0.93
22 2 0.07
ACGTcount: A:0.02, C:0.40, G:0.23, T:0.36
Consensus pattern (22 bp):
CCGTCCTCCTTCTGGGGACGTT
Left flanking sequence: Indices 244206 -- 244705
TGGCGGTGCTCAAGCTGTCCACGGACCCGTTGTCGGTGGGGGGGTCAATCTTCACCGACGGAAGG
GTTTTTTCGTCGCCCGAGCCGGAGGCGCTGTCGGGCGGCGTGATCCCGTCGCAGACGTCGTCGAC
CTTGGTGGACGAGGTGGTGGTCAGCGACGGCAGCGCCAACAACAATCCGAGCGCGTCGTCCATGG
TCAAATGTAGCAGCAGCAACACGCCGGCCGCGTCTGTCTCGGAGTCGGACGCCTCGGGCGAGGGG
GTGTGCACAGGCTTAGCGCGGGGTTTCAGCGTGGAGTCCTTGGTGGACTCGGTGCTTGCGTCCCC
TGGTGGTTTGTGGTTCGCTTCGTCTGTGGTGAACCCGCTGGTGTCCTTTGTGGTGTTGGCTTTGC
CAGAGGCGCTATCGTCTTTAGACTTGGGTTTGTTTTCGGTAGAGCTAGCCTTGTTGGTCTGCTTC
GAGTCCTTCTTTGAGTCCACCTTTGAGTCGACCTTCGGAGATTTC
Right flanking sequence: Indices 244759 -- 245258
AGTATCCTTACCGGCCTCCTCAGAGTCCTCTGCGTCCTCCTCAGCATCTCTCCCGTCTTGCTTAG
CATCCTTTCCAGCTTGCTTAGAGCCGTCGATCTCGGGGTCCTTTTCAGCGTCTTTCGCCTCGGAC
TTGTCCTTATCCGAATCCTTCTTCTCCTCACCGTCTCCTCCCGTTGCCTCCTTCGTCTTGGGCTC
CTTCTCTTTTCCCTCGTCAGCCGTTTCCTCCTCTGCAGCCTTGTCGTCGGAGGTTTTTCCGGCAC
CATCGGGTCCTGCCGGGGGTACCTCGCCGCCATTGGCACGCTGGCGGCCGTCAGCGACGGGGTCG
ACCCCCGTGGGGGAAGCGTCGCTTGGTTTGTCACCCATATATCTCGACTCTCACGGGGTTGGGTG
CTGGTAGACCTGGATCGTCCGGGATAAGGGTAGTGCGCGTTAGCTGCGGACGATCACGAACGCGC
GGCTCTAGTAGAGGTTGGAGAAGGGTAGCGCACACCACGGGGCTA
Found at i:244825 original size:21 final size:21
Alignment explanation
Indices: 244801--244844 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
244791 CGTCCTCCTC
*
244801 AGCAT-CTCTCCCGTCTTGCTT
1 AGCATCCTCTCCAG-CTTGCTT
*
244822 AGCATCCTTTCCAGCTTGCTT
1 AGCATCCTCTCCAGCTTGCTT
244843 AG
1 AG
244845 AGCCGTCGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.14, C:0.34, G:0.16, T:0.36
Consensus pattern (21 bp):
AGCATCCTCTCCAGCTTGCTT
Left flanking sequence: Indices 244301 -- 244800
TCGGGCGGCGTGATCCCGTCGCAGACGTCGTCGACCTTGGTGGACGAGGTGGTGGTCAGCGACGG
CAGCGCCAACAACAATCCGAGCGCGTCGTCCATGGTCAAATGTAGCAGCAGCAACACGCCGGCCG
CGTCTGTCTCGGAGTCGGACGCCTCGGGCGAGGGGGTGTGCACAGGCTTAGCGCGGGGTTTCAGC
GTGGAGTCCTTGGTGGACTCGGTGCTTGCGTCCCCTGGTGGTTTGTGGTTCGCTTCGTCTGTGGT
GAACCCGCTGGTGTCCTTTGTGGTGTTGGCTTTGCCAGAGGCGCTATCGTCTTTAGACTTGGGTT
TGTTTTCGGTAGAGCTAGCCTTGTTGGTCTGCTTCGAGTCCTTCTTTGAGTCCACCTTTGAGTCG
ACCTTCGGAGATTTCCCGTCCTCCTCTGGGGACGTTCCGTCCTCCTTCGGGGTTTTTCCGTCCTC
CTTAGTATCCTTACCGGCCTCCTCAGAGTCCTCTGCGTCCTCCTC
Right flanking sequence: Indices 244845 -- 245344
AGCCGTCGATCTCGGGGTCCTTTTCAGCGTCTTTCGCCTCGGACTTGTCCTTATCCGAATCCTTC
TTCTCCTCACCGTCTCCTCCCGTTGCCTCCTTCGTCTTGGGCTCCTTCTCTTTTCCCTCGTCAGC
CGTTTCCTCCTCTGCAGCCTTGTCGTCGGAGGTTTTTCCGGCACCATCGGGTCCTGCCGGGGGTA
CCTCGCCGCCATTGGCACGCTGGCGGCCGTCAGCGACGGGGTCGACCCCCGTGGGGGAAGCGTCG
CTTGGTTTGTCACCCATATATCTCGACTCTCACGGGGTTGGGTGCTGGTAGACCTGGATCGTCCG
GGATAAGGGTAGTGCGCGTTAGCTGCGGACGATCACGAACGCGCGGCTCTAGTAGAGGTTGGAGA
AGGGTAGCGCACACCACGGGGCTACGGCGCTATCATCACGGGGGGCCATCCGGATCATGTCTACG
TTGGTTGCTTGGTCTTTGTGTGTGTTCGACTGTGTCATGATCCAC
Found at i:254398 original size:24 final size:24
Alignment explanation
Indices: 254364--254409 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
254354 GTTCTAGTTC
*
254364 AGGAAAGGGTTCAAGCCAAGGCAA
1 AGGAAAAGGTTCAAGCCAAGGCAA
* *
254388 AGGAAAAGGTTCCAGTCAAGGC
1 AGGAAAAGGTTCAAGCCAAGGC
254410 GGAAGTGGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.39, C:0.17, G:0.33, T:0.11
Consensus pattern (24 bp):
AGGAAAAGGTTCAAGCCAAGGCAA
Left flanking sequence: Indices 253864 -- 254363
TGTACTTTGGTACGCAAAAAAGGTCTGGACCAGGAAAGCGCTAGGTTCACCGGAATCATGTCTTT
GTAACAGGCTGTATAAATAAGAGCAGCAAAATCTATCTAAAATAACAAATCAATCAACTACAAAC
ACAATATGAAAGTTTCTACCCTTGCCCCCGCTGCGGCAGCTTACCTTCTTCTCTCCGCCAACGGC
CTTCCGATTCTTGACTGGCGCCGTGGCTTTCGAGACCTGGGTGGTTCTGACCTGGGATCTTCCTT
ATCAGGGGCCAGTACTACTGGGAGTGGTTTTGGTCTGACTCCACTGTCTGGTGGCCGTGGCCTGT
CAGGCTCAGGTAAAGGCTCTGGTTTGGGTTCGCACTCGGGAAAAGGTCTGAAGTCATCAGAGTAT
GGCGGTGGCTCTGGCTCCGATGTGGGTTCTGGGTCCGGCAGTTCTGAAGAACAAGACGACTCGAG
TGCCGATTCAGGCTTGGAAACAAGCTCAGGAATGGGTTCTAGTTC
Right flanking sequence: Indices 254410 -- 254909
GGAAGTGGTGGATTTGGTAAAGGCCAAGGTCAGGGTCAGGGAAGCGGCCAGAGTGACAGTCAAGG
TCAGGGTCAAGGCCAAGGATCTGGCAACTCTTCCCTGTCCACAGAGCTCGAAGGTTCCTTTACGG
GCCAAGCCACATATTTCACCGACTCAATTGGTGCCTGCGGTAACTCCCTTGAACCTAATTCCGAG
TACTTTGTTGCCATTTCGCAAACTTTGTGGAATCAATTGGCTGGTGAGGGAGACACCAATCTGGC
ATGGATGTGCAACGATTACTGGATTGACGTCAGTTACAATGGCAAGAGTGTTTCCGTGAAGTTGG
AAGACTTGTGCGAAAGCTGTGGCGAGAACGATGTCGACCTCTCGCAGAAGGCATTCAGTGACTTG
GCAGAGCTTGATGTTGGCGTTTTGGACGTGACTTGGTCGTGGAGCACTCAGGGAGGCGGCTCCAC
CAGCGGGTCGGGAGCTGCTAGTCCCGTCTCGGGTGAGGATACCTC
Found at i:255452 original size:12 final size:12
Alignment explanation
Indices: 255435--255653 Score: 182
Period size: 12 Copynumber: 18.5 Consensus size: 12
255425 CTGGTGACTT
255435 TGGCTCCTCTGG
1 TGGCTCCTCTGG
*
255447 TGGCTCCTCCGG
1 TGGCTCCTCTGG
**
255459 TGG-T-CT-TAC
1 TGGCTCCTCTGG
*
255468 TGGCTCCTCCGG
1 TGGCTCCTCTGG
*
255480 TGGCTCCTCTAG
1 TGGCTCCTCTGG
* *
255492 CGGCTCCTCTGA
1 TGGCTCCTCTGG
*
255504 TGGCGCCTCTGG
1 TGGCTCCTCTGG
* *
255516 TGG-TCTTACTGA
1 TGGCTCCT-CTGG
255528 TGGCTCCTCTGG
1 TGGCTCCTCTGG
*
255540 TGG-TCTTACTGG
1 TGGCTCCT-CTGG
*
255552 TGGCTCATCTGG
1 TGGCTCCTCTGG
* *
255564 TGG-TACATCTGA
1 TGGCT-CCTCTGG
*
255576 TGGCTCATCTGG
1 TGGCTCCTCTGG
*
255588 TGGCTCTTCTGG
1 TGGCTCCTCTGG
*
255600 TGGCTCTTCTGG
1 TGGCTCCTCTGG
255612 TGGCTCCTCTGG
1 TGGCTCCTCTGG
*
255624 TGACTCCTCTGG
1 TGGCTCCTCTGG
*
255636 TGG-TCTTACTGG
1 TGGCTCCT-CTGG
255648 TGGCTC
1 TGGCTC
255654 TACAAGCGAC
Statistics
Matches: 167, Mismatches: 29, Indels: 21
0.77 0.13 0.10
Matches are distributed among these distances:
9 3 0.02
10 3 0.02
11 12 0.07
12 140 0.84
13 9 0.05
ACGTcount: A:0.06, C:0.29, G:0.31, T:0.34
Consensus pattern (12 bp):
TGGCTCCTCTGG
Left flanking sequence: Indices 254935 -- 255434
TCTATGGAGAATATGGAGAGAGAATTGGAAGATGCTGCGGGCACAAATGTCGAAGTCGAAGAGCC
AATGCCATCCACCAATCCCGTCGACGAGGGTCTGATGGGCACTGGTGGTGGAAAAATTGGCACTG
GTGGAAGGTTTAAAAAAGGTGGCCACCGTGGGCACTCTAAAGGCAACTCTTCTGAGGTGATTGGG
TCTGGCAACAGTACTGCTGGTCACCAGAATGGCCAGGGAGCTGGAACCTCTCTTGAACCTGGTAC
GAACGGTTTCGCAAGAAAGCAAAGCACTGGCGGCTCACAAGCATCTACAATTCCAATGGACATCA
CTGGAATGGAAGGTATGGGCGGTTCTACCTCTGGAGAAGCAGCTAGTGGCCAGCAAGGTGGTGGT
TCCTCTGGCAACGCTGGTGGCATTACCAATGAAACTGGGGAGGCTGAGAATGAGGAGGCAGCTGG
TGGCTTTGGCTCATCCGACGGGTCTTCAAGTGGCTCTGGTGACTT
Right flanking sequence: Indices 255654 -- 256153
TACAAGCGACTCTTCTGACAACGCCACTGGTGACTCCACAGACATCTCCACTGGCGAATCATCTA
ACAGCTCTACCGAGGGTCCCCCTGGTGGCTCCTCTGAATCCTCTGGCACCACCAACACTTCTGGC
GAGTCAGAGGACTGCCACGGTGACTCCGAAACGGGTGACTTCCAAGATAGCGACAGTGAAGAGAG
CGGTGCTCCAACCGACTCAATTCCTGAACTCGACGCTACGGAAACCAGCACGCCCGACCCCCAGG
TAAGCGCGGCGCTCTACGAAGGTGCATAGACTTGGGCCCTGGTTGGTGACCTAAGCCACACGGCA
ACCCTTAGCTTGATTTAGAATATAGTGATACACAAAGCATTTTCTCAGAAAGCACAACAACCAAT
TGCCGACCACCGAACGCTCTACCCATACCCCCCACACCTTATCGCCCCCTGCATTCGCAGCCCCA
TTTGTTCCCCTCGCCATGTGGCACCCAAAATTAGTCGTGCGCAAC
Found at i:268864 original size:39 final size:39
Alignment explanation
Indices: 268814--268968 Score: 206
Period size: 39 Copynumber: 4.0 Consensus size: 39
268804 AGGTCCACGT
* * *
268814 CTCAAACTACGCGTACGACGTCGCTG-ACCACCACTGGTA
1 CTCAGACTACGCCTACCACGTCGCTGCA-CACCACTGGTA
*
268853 CTCAGACTACGCCCACCACGTCGCTGCACACCACTGGTA
1 CTCAGACTACGCCTACCACGTCGCTGCACACCACTGGTA
* * * *
268892 CCCAGACTACGCCTACTACGTCGCTGCACACTACTGGCA
1 CTCAGACTACGCCTACCACGTCGCTGCACACCACTGGTA
268931 CTCAGACTACGCCTACCACGTCGCTG-ACCACCACTGGT
1 CTCAGACTACGCCTACCACGTCGCTGCA-CACCACTGGT
268969 CCTACGACTC
Statistics
Matches: 101, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
38 1 0.01
39 99 0.98
40 1 0.01
ACGTcount: A:0.23, C:0.41, G:0.19, T:0.17
Consensus pattern (39 bp):
CTCAGACTACGCCTACCACGTCGCTGCACACCACTGGTA
Left flanking sequence: Indices 268314 -- 268813
CACGTTCAATGTCAAGGTCACCTACGACCCTCGCACTGGACGCTGTTGCTTACCTCCAACCCTTC
AAATCGATTGTGATTTCATCGATGATGGCAGTGATTGTGTTCGTGCCATTAAGAACACCTGGGGC
CGTTGTGGATGGAGACATAAGCTCGATTGTTATGACAATGTCAAAAAGGTGAAACCGAGAGACTG
CTATTCTCGCATCAAGTCGAGATGGGGCGGCATGTACAAGCGTGAAGAAGACGAAGACCTTGACA
ATGTAAGACGTACTTTTGGACGGTATTCGTACCAAGATTGTTGGGGTGTGTTCACTCGTTGCTCC
CGTGGCCATGGCAAAGTTTTGCAGTATTGCTGGGATTGCCGTTGCGACCCCCCTCCCCATACCAC
CAGAACTACCACGACCACTCTGAGAACTCTGACACCACCTCCCACAACACGGACCACGTCCACGC
GCACCACTTCTGATACCACGTCGCTGACTACCACCAGGTCCACGT
Right flanking sequence: Indices 268969 -- 269022
CCTACGACTCTGACTACGTCTACTGGTCCTACTACGTCGCTGCACACCACTGGT
Done.