sallet_2.scaffold.fasta.s55.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold63
Parameters: 2 7 7 80 10 50 500
Length:  166181

Tables:   1   

This is table  1  of  1  ( 93 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--145	39	3.7	39	92	3	231	22	41	20	16	1.90
86--276	102	1.9	102	88	2	294	19	39	20	19	1.92
34664--34708	13	3.0	16	78	18	60	22	48	8	20	1.76
35097--35131	13	2.8	13	86	4	54	22	60	17	0	1.37
37530--37587	24	2.4	24	79	0	62	1	31	41	25	1.66
37549--37589	9	4.9	9	80	17	52	0	26	43	29	1.55
39077--39148	14	4.9	14	77	9	54	15	2	47	34	1.60
39074--39117	17	2.6	17	96	0	79	13	0	52	34	1.41
39092--39146	28	2.0	28	81	0	65	16	3	47	32	1.64
40295--40401	15	7.3	15	87	6	139	36	8	50	4	1.54
40290--40373	27	3.0	27	87	5	114	36	10	48	3	1.55
40290--40334	12	3.5	12	77	16	54	40	15	42	2	1.59
40295--40388	42	2.2	43	86	5	127	37	8	50	4	1.53
40515--40570	15	3.7	15	73	17	53	44	16	30	8	1.78
40479--40570	30	3.1	30	80	0	103	40	19	29	10	1.86
40580--40612	15	2.3	14	94	5	57	48	36	9	6	1.60
40587--40633	15	3.1	15	81	0	58	51	31	10	6	1.62
41257--41305	18	2.7	18	90	0	71	8	18	57	16	1.63
41233--41266	6	5.7	6	89	0	50	0	23	52	23	1.47
41262--41305	9	4.9	9	82	0	61	9	20	56	13	1.64
42974--43009	18	2.0	18	88	0	54	44	5	47	2	1.41
43043--43089	18	2.6	18	82	0	58	38	4	48	8	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44476--44551	29	2.6	29	81	10	91	53	6	28	10	1.60
44487--44551	15	4.4	15	80	3	78	53	6	30	9	1.57
47363--47391	14	2.0	15	93	6	51	20	41	10	27	1.85
56877--56906	3	10.0	3	92	0	51	0	36	30	33	1.58
79222--79262	21	2.0	21	85	0	55	14	26	46	12	1.80
79254--79306	21	2.5	21	75	9	63	20	18	50	9	1.74
79301--79346	12	3.8	12	91	0	74	6	36	23	32	1.81
79306--79354	24	2.0	24	84	7	64	8	32	28	30	1.86
82389--82416	14	2.0	14	100	0	56	7	21	35	35	1.81
86946--86977	16	2.0	16	100	0	64	31	6	25	37	1.81
93623--93680	13	4.5	13	79	10	66	18	0	60	20	1.36
94149--94182	12	2.8	12	95	4	59	23	5	52	17	1.66
94579--94617	12	3.2	12	96	0	69	7	23	56	12	1.62
96466--96530	15	4.3	15	86	2	85	41	47	0	10	1.38
96593--96627	12	2.9	12	91	0	52	0	48	5	45	1.26
97370--97421	21	2.5	21	87	0	68	15	48	36	0	1.45
101495--101570	12	6.3	12	96	0	116	38	34	27	0	1.57
101501--101572	6	12.0	6	81	0	90	41	33	25	0	1.55
101873--101904	6	5.3	6	100	0	64	53	31	15	0	1.43
104122--104162	16	2.6	16	92	0	64	46	0	36	17	1.48
104153--104202	12	4.1	12	84	2	55	24	2	50	24	1.60
107356--107395	11	3.5	12	86	10	57	2	42	0	55	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107380--107444	8	7.9	8	82	5	76	3	47	0	49	1.17
108462--108518	17	3.4	17	75	0	69	29	54	1	14	1.50
108445--108524	34	2.4	34	82	0	106	32	47	1	18	1.57
108445--108521	17	4.5	17	73	0	64	33	48	1	16	1.55
115460--115489	15	2.0	15	100	0	60	13	33	0	53	1.40
120111--120249	36	3.8	36	76	12	122	33	46	15	5	1.68
120109--120224	9	12.9	9	69	10	67	32	45	16	5	1.69
120212--120236	12	2.1	12	100	0	50	32	60	8	0	1.26
120111--120249	18	7.6	18	74	7	102	33	46	15	5	1.68
120972--121060	45	2.0	45	81	0	106	24	30	28	16	1.97
121425--121835	45	9.1	45	80	5	384	19	27	33	19	1.96
121425--121835	135	3.0	134	79	4	443	19	27	33	19	1.96
121620--121689	21	3.2	21	67	25	63	21	27	38	12	1.90
122292--122350	14	4.1	14	91	2	82	33	45	0	20	1.51
124195--124247	22	2.4	22	78	6	63	16	13	33	35	1.88
126494--126530	17	2.2	17	90	0	56	18	21	32	27	1.97
128458--128517	18	3.3	18	88	0	84	13	31	38	16	1.87
131307--131367	25	2.4	25	94	2	104	4	16	37	40	1.70
132844--132907	18	3.4	18	89	4	92	26	4	35	32	1.77
132899--132931	12	2.8	12	95	0	57	21	6	27	45	1.75
135945--135983	13	3.0	13	92	0	69	33	15	30	20	1.94
136490--136549	18	3.3	18	83	0	84	18	21	16	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145280--145324	12	4.1	11	81	18	58	2	35	20	42	1.64
145283--145327	21	2.1	21	95	0	81	2	35	17	44	1.62
147283--147335	18	3.0	18	86	5	72	32	16	22	28	1.96
153172--154908	33	49.1	33	75	11	759	19	32	23	24	1.98
153379--154806	144	10.0	143	74	13	975	19	32	23	24	1.98
153241--154576	72	18.9	72	73	15	570	19	31	23	25	1.98
154098--154356	75	3.5	75	82	6	307	18	33	25	22	1.97
153547--154849	72	18.4	69	72	13	462	19	32	24	24	1.98
157253--157392	27	5.2	27	97	0	262	28	45	7	18	1.77
158999--159028	10	3.0	10	100	0	60	20	0	70	10	1.16
159447--159485	11	3.5	11	92	0	60	5	41	12	41	1.65
159475--159526	17	3.2	16	89	10	79	5	36	11	46	1.64
159475--159517	15	2.7	15	92	7	68	6	37	11	44	1.68
159479--159536	8	7.2	8	79	14	66	3	37	12	46	1.58
159939--159964	9	2.9	9	100	0	52	23	57	7	11	1.59
160312--160349	18	2.1	18	90	0	58	28	23	44	2	1.67
160292--160326	12	2.9	12	82	0	52	40	17	42	0	1.49
160513--160549	18	2.1	18	94	0	65	35	16	35	13	1.88
160891--160921	15	2.1	15	93	0	53	38	25	35	0	1.56
161004--161038	18	1.9	18	94	0	61	37	8	54	0	1.31
161114--161151	15	2.5	15	86	0	58	21	23	52	2	1.59
163076--163147	10	7.2	10	90	0	108	36	9	20	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
165755--165890	48	2.8	48	86	2	184	10	33	25	30	1.89
165851--165901	15	3.4	15	78	10	50	13	31	25	29	1.94
165818--165953	63	2.2	63	86	2	184	9	33	25	31	1.88
165760--165999	111	2.2	111	87	1	347	10	34	25	30	1.89
165881--166181	48	6.3	48	94	0	494	8	34	25	31	1.86

Tables:   1

The End!