Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold73
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 15949
ACGTcount: A:0.25, C:0.25, G:0.27, T:0.23
Found at i:4080 original size:18 final size:18
Alignment explanation
Indices: 4054--4092 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
4044 GTGAACAGGA
4054 CCGGACAAAGACCTAACT
1 CCGGACAAAGACCTAACT
*
4072 CCGGGCAAAGACCTAACT
1 CCGGACAAAGACCTAACT
4090 CCG
1 CCG
4093 TTATCGAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.33, C:0.36, G:0.21, T:0.10
Consensus pattern (18 bp):
CCGGACAAAGACCTAACT
Left flanking sequence: Indices 3554 -- 4053
GGATTGATAGTGTAGAAGTAGTCCTGGCCAATTCTAGCTCCAAATGCACCGTTTCCAGGCATGAT
TCCCCCGGGAAACGCAAATGACTCTACTGGCACCTTCCCCTGACACTCACGATACAATGCTTTGT
ATATATCCCTTAATTCGACACAATCATAACGACATTTAAAGCTCCCAGGGGCAACTGTGAAAGTG
AAAGTGTCATTGTTCCAGACTCCCAATGTATTCATCTCGGCGTTTCCACGACTAATCTCCAGGCC
GTGGTCATCGGAGTAGGAATGGTCGTCGTACAGGGCCGCGACAGTTAGCGTTAGTAATAGTAACA
ATCTGAACATGTCAGCACTTGTGCTGAAAATGCATTATATGTTAAAAAAGAATGGGCACCACCAC
AAGCATTATTTTTTTACATCGTTGTCCCGACATGACGCAACGGGGCATCGTGGTGGTAGAAAACA
TGGGGTAAGCCTGTAAGGAGTGGGGTGCTGGCGCAGTGAACAGGA
Right flanking sequence: Indices 4093 -- 4592
TTATCGAATTCTGGATTGCAAATACAAACCTGAGCGATCATTCCTATGGGCTGATTTAAACGGTT
TAACGGCGCCAACGTTGCATTGTTAGTCTCGTAAACCTTAATGATGGCAGACATTTTCTGTATGG
CGTCTTCGGGTTATTGACGCACACGCTGGTTTGGAGCATCCATTTGGGGTGCGACTGTCCCTAGC
CATGCTTCTATATTGCAGCTGCTTGCGTGTTTACCTTCCCGCCGGTTTTGATCGATTGTTTGCGC
GTATTCTGTCGTTTTTTCAAGTGACAGTTACATCCGTGAAACGTTCCGGATACACCACTAACGTC
AGGGTGGGTTAAAGGCTTATAAGTGTGTTACTATTTTTGCTTACGGGGGCCACTCTCATAGGTGC
CCTTCTGTGCACATGTTTAAGAGACAAGAAATAATCCTATCGATCAGGGCGGACCAAGGATGGCC
AGGTGGTGCCTACCTTCCGGGTCGAATAGCTCCGCCCGTTTACCC
Done.