Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold13

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 426

Length: 710
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:565 original size:32 final size:31

Alignment explanation


    Indices: 524--586  Score: 117
    Period size: 32  Copynumber: 2.0  Consensus size: 31

        514 TTGTGAAGTT

                                           
        524 TCTTTTAGTTCCCGGGGTATAGTTAACATGC
          1 TCTTTTAGTTCCCGGGGTATAGTTAACATGC

                                            
        555 NTCTTTTAGTTCCCGGGGTATAGTTAACATGC
          1 -TCTTTTAGTTCCCGGGGTATAGTTAACATGC

        587 GAGTAATTAC


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  32   31  1.00

ACGTcount: A:0.19, C:0.19, G:0.22, T:0.38


Consensus pattern (31 bp):   
TCTTTTAGTTCCCGGGGTATAGTTAACATGC

Left flanking sequence: Indices 24 -- 523
GTTTGCCTACTTTGACGTCCTCAACCCCTCCCAACTCTGCTGTAGCTTGACTTCCCAACACCTAC
CATGGTCACCTAGTGCGCACCAAAATAGTCAGCCGCACAAATGCGGCTCGTTTGCTTTTTATATT
ATTCGCTTCTATGTATATGCGGCGTGGGGCCCCTGGGAGGGGTGAAAAACGCAAAAATTTGAATG
TTTTGTTGAAAAATGCCATCAGCTGGTGGGATAGCTTTCGAAGGAGGGTCAATCATAGAAGTAAC
TCTTATCTGTTCACTTAATCAATGGGATAGTCTCGAATATAGGCTCTTCGCTAAATGAATAATCT
CATGCACAACTAGTCGCTGCCTTGATCTTGTGCTAATACGACGGGTAGTATTATGAATGTCGGAA
TTATGGGTTAAGCCTTTGGCTGTATTGATCCGTAAAATTATTATGGTATGGAAGGCGTACTTTGC
TATACGGTCATACTAAGGTGTAAAGTCCGTTACCATTGTGAAGTT


Right flanking sequence: Indices 587 -- 710
GAGTAATTACAGTGAAATACTAGCCTGCTGTCATATCATATCCCAACAGTTTTTAATAGATCCAT
TATATCCCAAAGTTACGACAATGATTTGAAAAACATTCTATGCATAGTGTTTCGAAGCA


Done.