Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold59
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 118614
ACGTcount: A:0.24, C:0.26, G:0.26, T:0.24
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:96 original size:31 final size:30
Alignment explanation
Indices: 61--171 Score: 113
Period size: 31 Copynumber: 3.7 Consensus size: 30
51 GGTAGAAGGG
61 TGGCTGACCACGGCCACCCTGGTGTAGGGGA
1 TGGCTGACCACGGCCACCC-GGTGTAGGGGA
* *
92 TGGCTGACCACGGTCATCC--TG-AGGGG-
1 TGGCTGACCACGGCCACCCGGTGTAGGGGA
* * *
118 TGGGCTGACGATGGCCACCCCGGTGTAGAGGA
1 T-GGCTGACCACGGCCA-CCCGGTGTAGGGGA
150 TGGCTGACCACGGCCATCCCGG
1 TGGCTGACCACGGCCA-CCCGG
172 CGGGGAGGCC
Statistics
Matches: 64, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
26 1 0.02
27 17 0.27
28 4 0.06
30 2 0.03
31 39 0.61
32 1 0.02
ACGTcount: A:0.16, C:0.30, G:0.38, T:0.16
Consensus pattern (30 bp):
TGGCTGACCACGGCCACCCGGTGTAGGGGA
Left flanking sequence: Indices 1 -- 60
GGGGTGGCCACCGTCGGCCATCCCGCCGGGTGGGCCGACGACCACTCCGGGGTAGAAGGG
Right flanking sequence: Indices 172 -- 671
CGGGGAGGCCGACGGGTGGCCCCTCCGGTGTAGGAGGGTAGCTACGGCCGGCCCTGAGTAGGCGG
GTGGGCCGACCACGGCCACCGCGCAGTAGGAGGCGGCTACGGTCAGCGCTCTGTAGGCGGGTGGG
CCGGTACGGTCACCCCGATGTAGGAAACGGGGTGGGCCCCCTACGGCCCCTCCGTTTTGTGACCT
AGGGAGAACCCCCTACGGTCACAACGTTTCATGGTCACCGGGGAGAGCCCCCTACGGTCAGTCCG
TTTTTTCGATTTTTCGGCCTTTTTTTCAACAGTCGCTTAATTTTTCGGTTAAAAAATATGTCATT
TCGATCTTGAGGTGCATGAGTAGAAGCCACTGGCCGTTAGAGTGTACTTTTCGGGGGGATTCCTA
AGATACATTCTGGTTCATTCACCTTAAAGAAACGTTTCCTTCAAGATTGCCACAGCAGAATGGTC
TCTACACTCTTTAATTAAACCCAATACAATTAAATATGGCACAGG
Found at i:134 original size:58 final size:57
Alignment explanation
Indices: 58--168 Score: 168
Period size: 58 Copynumber: 1.9 Consensus size: 57
48 CGGGGTAGAA
* * *
58 GGGTGGCTGACCACGGCCACCCTGGTGTAGGGGATGGCTGACCACGGTCATCCTGAG
1 GGGTGGCTGACCACGGCCACCCCGGTGTAGAGGATGGCTGACCACGGCCATCCTGAG
* *
115 GGGTGGGCTGACGATGGCCACCCCGGTGTAGAGGATGGCTGACCACGGCCATCC
1 GGGT-GGCTGACCACGGCCACCCCGGTGTAGAGGATGGCTGACCACGGCCATCC
169 CGGCGGGGAG
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 4 0.08
58 44 0.92
ACGTcount: A:0.16, C:0.29, G:0.39, T:0.16
Consensus pattern (57 bp):
GGGTGGCTGACCACGGCCACCCCGGTGTAGAGGATGGCTGACCACGGCCATCCTGAG
Left flanking sequence: Indices 1 -- 57
GGGGTGGCCACCGTCGGCCATCCCGCCGGGTGGGCCGACGACCACTCCGGGGTAGAA
Right flanking sequence: Indices 169 -- 668
CGGCGGGGAGGCCGACGGGTGGCCCCTCCGGTGTAGGAGGGTAGCTACGGCCGGCCCTGAGTAGG
CGGGTGGGCCGACCACGGCCACCGCGCAGTAGGAGGCGGCTACGGTCAGCGCTCTGTAGGCGGGT
GGGCCGGTACGGTCACCCCGATGTAGGAAACGGGGTGGGCCCCCTACGGCCCCTCCGTTTTGTGA
CCTAGGGAGAACCCCCTACGGTCACAACGTTTCATGGTCACCGGGGAGAGCCCCCTACGGTCAGT
CCGTTTTTTCGATTTTTCGGCCTTTTTTTCAACAGTCGCTTAATTTTTCGGTTAAAAAATATGTC
ATTTCGATCTTGAGGTGCATGAGTAGAAGCCACTGGCCGTTAGAGTGTACTTTTCGGGGGGATTC
CTAAGATACATTCTGGTTCATTCACCTTAAAGAAACGTTTCCTTCAAGATTGCCACAGCAGAATG
GTCTCTACACTCTTTAATTAAACCCAATACAATTAAATATGGCAC
Found at i:962 original size:24 final size:24
Alignment explanation
Indices: 935--1002 Score: 73
Period size: 24 Copynumber: 2.8 Consensus size: 24
925 CTATCAAAAC
* *
935 ATTTGACCAGAGTTCTAACCAGAT
1 ATTTAACCAGACTTCTAACCAGAT
* *
959 ATTTAACCAGTCTTCTAACCAGAC
1 ATTTAACCAGACTTCTAACCAGAT
* * *
983 ATCTCACCAGACATCTAACC
1 ATTTAACCAGACTTCTAACC
1003 TGATTTCTAC
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.34, C:0.29, G:0.10, T:0.26
Consensus pattern (24 bp):
ATTTAACCAGACTTCTAACCAGAT
Left flanking sequence: Indices 435 -- 934
TTTCGATTTTTCGGCCTTTTTTTCAACAGTCGCTTAATTTTTCGGTTAAAAAATATGTCATTTCG
ATCTTGAGGTGCATGAGTAGAAGCCACTGGCCGTTAGAGTGTACTTTTCGGGGGGATTCCTAAGA
TACATTCTGGTTCATTCACCTTAAAGAAACGTTTCCTTCAAGATTGCCACAGCAGAATGGTCTCT
ACACTCTTTAATTAAACCCAATACAATTAAATATGGCACAGGTGCTGACGCTCCTGATAGCGGGG
CTTTTTGAGATCGTGGTGCTGACGTCGGTGACTGGGCGCACTGTCGCTTGGAGTAAAGATGGACG
CAGGGGTTTTGAGGGGTTGAAAGTGATCCATCCGCTGCCGATAGCGCTAGAGGACGACCCGGTAG
GCAACGGGAGCCAGGAGAGTGAAAAAGGTCACTAGACCACAAGGCTAGAGTTCAGACCAGAAAGC
AGACAAAAAATATAACCAGAGGTTTAACCAGGTATCTATCAAAAC
Right flanking sequence: Indices 1003 -- 1502
TGATTTCTACCAAGCCTTTTACCCAGCCCACCAAAAATGGACACAAAGTACCCATTGTAAGTGGC
ATCGCTATTGCCAACGGCAACACCGCCAGCGACCCCTACCTCGAGCTCTTGAAACAAAACATTTT
GAGCGTGACCGGTGACCCGCACCGGGCTTGCATTATCGCCGGGATGATAGGGGGCGATCTGATTG
CCGCCAAACACGAGATGATCACCAACCCTTTCCTGTCCACCAAAAACTATGGTCTGAAAACACCC
TGAAGTTCACTCCCGCGTCATTGGCCAAGTACAACACCTGTGCACTAAAGCTAGGTATGCGGGTG
CTGGTGCTGGTGATGGCTGCCGTGGAACCTAAATCCTGCAGTGATATGAAGGTCCCAACCGCTGT
TGCACCGGTCAGTGATGCCCTGACGCGTTAGGCGGCAAGGGTTTACCCTGTTGACCAACCCCCAG
TATTTGCATGTTTCCGCGAACATCCCTACTCGGCGGGTGTTGCTC
Found at i:1614 original size:21 final size:21
Alignment explanation
Indices: 1590--1639 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
1580 AAGACAATGG
1590 CGGAGAGCACGGCGAA-GGCCA
1 CGGAGAGCACGGC-AATGGCCA
1611 CGGAGAGCACGGCAATGGCCA
1 CGGAGAGCACGGCAATGGCCA
1632 CGGAGAGC
1 CGGAGAGC
1640 GTGGCCCGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
20 2 0.07
21 26 0.93
ACGTcount: A:0.28, C:0.28, G:0.42, T:0.02
Consensus pattern (21 bp):
CGGAGAGCACGGCAATGGCCA
Left flanking sequence: Indices 1090 -- 1589
CCGCCAGCGACCCCTACCTCGAGCTCTTGAAACAAAACATTTTGAGCGTGACCGGTGACCCGCAC
CGGGCTTGCATTATCGCCGGGATGATAGGGGGCGATCTGATTGCCGCCAAACACGAGATGATCAC
CAACCCTTTCCTGTCCACCAAAAACTATGGTCTGAAAACACCCTGAAGTTCACTCCCGCGTCATT
GGCCAAGTACAACACCTGTGCACTAAAGCTAGGTATGCGGGTGCTGGTGCTGGTGATGGCTGCCG
TGGAACCTAAATCCTGCAGTGATATGAAGGTCCCAACCGCTGTTGCACCGGTCAGTGATGCCCTG
ACGCGTTAGGCGGCAAGGGTTTACCCTGTTGACCAACCCCCAGTATTTGCATGTTTCCGCGAACA
TCCCTACTCGGCGGGTGTTGCTCAGTTTCAGGAAGAGCACGGCGGACAAGTGGATGCATAATTCC
TAGGTTTTAACAAGGTAATTATACTCCATAACATGAAGACAATGG
Right flanking sequence: Indices 1640 -- 2139
GTGGCCCGTTTAAGCGGCAACCAACCGGCTGGTGGATACTTGTGCCGGCGCCGACCTTGGCGCCC
AGCGTTTGGAGACTGGCTGCACCAACAAGCACCACCTGATCGAGAAAGGGAATCCCAAAGGTTAG
CCCGCCGCAAATGTCAGCAAGAACAGTCGGTATAACGCGTTTTGGCTGTTCCGGAAATTGAGCTG
GGTGTCCCACATTGTTTCCATCACCACTTCCAGAAGCGGAATCTCCTCCGTCCAGGCTTTGAAGA
GCAGCGAGTTGGCGTGGCACATGGTAACGCGACACGAACCACGGGTTCACCTCCTCGCGTAGTAG
GCGGTGGTATGGGTGGCTCTGCAAGCGCCTACACACGATGGTACATGTGACAGAACTGGTCCCGA
CCGTTCCAGAGGAGACTCTGGTCTAAATGAGACCCCATTCGCCGGTACACTCCCCGAGTTCCCAC
CGATCGCTCTGTTCCTGAATTGATTATCTGTTCTGACCTTGTTCG
Found at i:9398 original size:15 final size:15
Alignment explanation
Indices: 9378--9410 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
9368 CCCCTTAGTG
9378 CTCGCTTTCCTACTT
1 CTCGCTTTCCTACTT
9393 CTCGCTTTCCTACTT
1 CTCGCTTTCCTACTT
9408 CTC
1 CTC
9411 TACCACGTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.06, C:0.42, G:0.06, T:0.45
Consensus pattern (15 bp):
CTCGCTTTCCTACTT
Left flanking sequence: Indices 8878 -- 9377
TAAGTGGATCTCGGGGATTAGCCCCAGTTCAACGAAACGTCCCGACTTTCCCCCGGGCCGCCTGG
TTCCATCGCGTGGTCCTGCAAGGCAATGCACACCGAGAGGTCGTACGTAAGAAGGTTATCTATCG
GGAAGTGATCCCTCGAGTCGTGACACAAAGCCGGTCCCGGCAGACACGAATGCCAGGCTAAAGTG
AAACGGTGCGGGGGCAGTGTCCCCCCCATCCCCCACTTGGTCAAGAAGTTCTTGGTTTAAACGGT
CCTGCCAAGAATTGCTCTTTTTTCACTGGCTGGATCCCCCACGCTAGTCTATTTGCAGCCACGGA
ATAATTTTGCGCAGGTGAGATTCATGTACGCTGATAAGAAGAACAAACGTGAACAGACGATAGAA
AGCAATCAGCGGCAACAGAAGGGTATCATGGGGTACAATCTGGGATGCGCAGCCACAGTTATCCT
TGGCAGCGCTATCGCTTATTTATTCCACGAATTCGCCCCTTAGTG
Right flanking sequence: Indices 9411 -- 9910
TACCACGTCCTCCACGGTTCTGACCGGGTGACAACGGGTGGTATTGTACGTAGCCCGGAGATCAT
GTCAAGAATGCATACACTAACCGGGAGGGGAAACCCGATGGAAACGGGAACAAGGGCAATTCAGG
GGCAAACATCATACGATTCGGGGTCTCACATGCTCTGCCACGGTTGCCACACACTTCCCCCACCC
CGTCTCCCTCCTTATATCACGCTTCAGCCCCCCCACCCGCACGCTGTCTGCACCAGTTGACTCAG
GTTGCGAGCCCGCGGAGCCAACGTCCATGCTTATCGGCCAATCACCCGTCACGATAACACATGCA
CCGGCTCATGGGAGACTACGAGACTAGTTAATAAGAACGGCTATCGCAGCCGAAACGACGACATG
GACGACTTGGCCGTCAACGATCTCTGGAAAATATTCAGGGTGGCCCGTCATACCCATATGCACCA
ACCTCGGCTCGAAAACATGGCCCGTCGGATGATGTTCCTAAAACA
Found at i:12265 original size:18 final size:18
Alignment explanation
Indices: 12244--12297 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
12234 CACTAATCTA
*
12244 TCCCTCCCTACTACTTTC
1 TCCCTCCCTACTACTCTC
*
12262 TCCCTTCCTACTACTCTC
1 TCCCTCCCTACTACTCTC
* *
12280 TCCTTCCCCCACTACTCT
1 TCCCT-CCCTACTACTCT
12298 TGATCTGCAC
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
18 20 0.67
19 10 0.33
ACGTcount: A:0.11, C:0.52, G:0.00, T:0.37
Consensus pattern (18 bp):
TCCCTCCCTACTACTCTC
Left flanking sequence: Indices 11744 -- 12243
CCCGCACCCCAAATAAGGTTCGCCAGATCGATTACGTATCGGGTGGTTTCAGATATACGGTGAAA
CGTGGTTTCAAACACTGGCTACGTTGACGGCGTGCGGTCTGACGCCGCCCCAAGGTCCTGATCTG
GTAACTGCGGCGTGCTCCTGCCCAATACGACGTCGGAGACCATGCAGCGCACCCCATTGGGGCTA
TCGTGACAAAGCTACGTCCTAGACGAGCTACAATCTCTAACCACTTCTCTTACATTTACATAAGC
CGGCTCGGCAGCCGGTGATGCAGACATTGTGTCGGGCGGTCCACCGTCAAGCAGTGGGTGAAGCT
ATTCCGCTGGTGTACCCACCAATGGCCTCGTGCCACCACGTTTATGCCTCGTCACCACTCACCCC
CACCCGTAACCACCAATCATCAATTAGTCCTCATAACCCCACTACCACTATCTTCCAAACTATTG
CTACATACCACCCGCTATCGACGCTATTCTCTACCCACTAATCTA
Right flanking sequence: Indices 12298 -- 12797
TGATCTGCACTCGCCTACGATCACAATCTCGCTCAGTTGCCTTCCGGACTAGCCTCTCCGAAGCT
CCGCGCTAAGAATCAGGCAACACGTACGACAGCAAGGTAAGTTTAGGCGGCCTGTCAGAGCAACC
CAGAACCCCCGCCACCCCACCGTAGCACCACCCCACCCGCTGCCCACCTCTGGCTCGCTGTCTCC
TACCCCGTATCCCCCACTATCCCCCACCTTTTTTCTCGTTTAGCCCTAGTCCACCACCCTGACCC
ACTCTGACCCACCTCCAGATCACCCACCCACAGAAGACCCACCAAAAAAAAACACCGTAGCTACA
AACTAGACCCCCAATTACCCCAGTAACCCGCCAGCCCGCTCCCACCTCCACCCGCGGACCCCCCA
TACACGCTTCCGGTTTCTCGCACTACGTGTCCCACCCAGAAATTTTTCACAGATCACCATACCAA
CCCCACCATGAGTGTCCTTCCTGGCGACGTGCACGCGCTGCTTCT
Found at i:23811 original size:19 final size:19
Alignment explanation
Indices: 23783--23819 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
23773 ATAATCTTCC
*
23783 ACAATTTCTACCACATTTG
1 ACAATATCTACCACATTTG
*
23802 ACAATATCTACCCCATTT
1 ACAATATCTACCACATTT
23820 TAGAAATTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.30, G:0.03, T:0.35
Consensus pattern (19 bp):
ACAATATCTACCACATTTG
Left flanking sequence: Indices 23283 -- 23782
GCAAGTGGTACATAGGGTTTCAACGGAAGGTAGAGAGAGTACGCACTCGGTGCCTTTGGACCACG
CCCAATGCCTATACACAACCTCGGTAATGTTTTGCCCCGCTTGATCAGGGGTGTCAGGCTATAAT
TCAACGCTGCGGTTGTCAGCCGAATGTGGGGATTAGATCATCTTGCACCCTTGTACTTTCGCGTC
AAGTTCGGGTTACGTCATGGTGAGTGGTTCCAAGGAACAACAATAGATGGTCGCGTTTTGTGACG
AGCGTCTGTTTTGGTTTCAAACAATCGTGTTCCTAGCGGGCTACGGGGCTTTGCTAGCATGGTGT
CGTACTGCATCTGAGTTTTCGGATGGTGGTTCTAGTGAAACGGACGAAGTGTAGTTGAGGGAAGC
GTAGTGTTGACAACAAAACGAGTTCATTGAAACGCTTAATGTGTTCACGTGAGAAACCAGGAATA
ATCGGTAGTTACGTATCACGACGTTTTCTGTTATAATAATCTTCC
Right flanking sequence: Indices 23820 -- 24319
TAGAAATTTTTACAAATTCAATAATTTTCATGCATTTTGTAGATGCCTCCACTTTCAAAACTACT
GGGTATTTATGTATTCGTAAAGTCATTAAAAGCTAGCCACGTAGGGGTGGTCTAGTAAAGCCGTG
GCAGTGGCCCGGTCGCTGGCGTCCCAGATAAAGATCTGCGACAAAAACAGAATGAACGGCGACAG
CCGCGTACAGTGCAAGTGCACCTCCAACGGGCGGGCCGACGGCTTGAAATGCCGCTTGTGCGCCT
GGGCATTGGCCAAGTACTGGCCAAAGATCAGCTGGTTGAGCCGGCCCTGGGCATCAAAGATTTTA
AACAAAAGCGTGCGCTTGGCAGCCTTCTCAGACAGCGTCCCCTCAAAGTTGAGCGTCAGCTTCTG
GCAGCTCTTCAAGAGCTGGCGACGGTAGTTGAGAATGGTGGCGGGCTTGGGGCACCCCAAAAGCT
CAACAATGAGCCCGCACTGCTCAATCTCGGACCGTCCAGCCAAAA
Found at i:25764 original size:9 final size:9
Alignment explanation
Indices: 25756--25840 Score: 57
Period size: 9 Copynumber: 9.4 Consensus size: 9
25746 CACACCGTTG
*
25756 AGTGTGTTG
1 AGTGTGTTC
25765 AGTGTGCTTAC
1 AGTGTG-TT-C
*
25776 CGTGT-T-C
1 AGTGTGTTC
25783 AGTGTGTTC
1 AGTGTGTTC
*
25792 AGGGTGTTC
1 AGTGTGTTC
25801 AGTGTGTTC
1 AGTGTGTTC
* *
25810 GGTGTTTTC
1 AGTGTGTTC
* *
25819 AGGGTGTTT
1 AGTGTGTTC
* *
25828 AGGGTGTGC
1 AGTGTGTTC
25837 AGTG
1 AGTG
25841 AGTCCAGCAA
Statistics
Matches: 58, Mismatches: 14, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
7 5 0.09
8 1 0.02
9 46 0.79
10 2 0.03
11 4 0.07
ACGTcount: A:0.11, C:0.11, G:0.39, T:0.40
Consensus pattern (9 bp):
AGTGTGTTC
Left flanking sequence: Indices 25256 -- 25755
GCAGCGGAGCCACCCGGGGAAGCCGTGGCCGCGGGGTCTCGGGCTCGGGCGTGTTGGCGTCGCTG
GCGCCGAACGAGCGGCTCGTTTTGCGGGTCTGGCGCGGAGGAGCCTGGTTCTTGAGCACGCCGTA
GTCGGGTGCCTTGCGAGGCCGGGTGGGGCCTGGGTAGAGTCGCGAGAACACGTCCAGCTCCGAGC
GAGGCATTGCGGGGATCAGCTGGGACTTTTTGAGTCTCCTGGGCGGCGGGCCGCGTGGCGAGCCC
GGGTACGGTGCCGGGTGGGCCACGAGCGGTGGTGCCAACGCGGTCTGGACCTTCTTTTCGGGCGA
GGCCAGCATGGGTTTCGGTTCTCGAAGCGGTGGTTTGCCCAGGGTGTCTCGAACGGGTTCGCGAA
GGGGTGTTTTTGCGAGGGTGTCTCGAATGGGTGTTTTCAGGGTGGGGGTGAGCGACGGAAGCGTG
GACGGGTTCAAAGTGGTGTTTTTGGTGGCCGCGTTCACACCGTTG
Right flanking sequence: Indices 25841 -- 26340
AGTCCAGCAAGTTCAGCGTGTTTGCCGTATTCACTGCGTTTATCGAGTTCACCGCGTTCACCGCG
TTCACTCCGTTCACTCCGTTGGGTCCACTGGTCCCGTTGGACCTGTTCTTGCCCGAGACCCGCCG
CCGGGCGGTCTTCGAAGGCGAACTGCGCTCCTCGGGCTCAATTGACCCCTCCTTCGGCGAGGTCA
GACCCCGCACGCGGGCCCGGTAGTGGTGCATTCCCTTGCGATCGCCACTGGCACCCAGGCTCGGC
GTCAGCGGAGGCAGCAGCAGCGAGCGAGGAGTAAGCGGAGCCCTCGCAGGAGCCAACAGCCGGAG
CGGGTGGGCTCGCGACTCGACCTTGGTGCGTTTGAACTCCTTTTTCTTCTGGAGCAGCAGCGTGG
TCTCCCGCATGAACCCGAAGTTGGTCGACTCCGCTAGCACTGGCGACTTGGCTGTGCCCGGGGGC
TGTGCGGGTCCGTGGCTGCTCCGGGCGATGTTGATTTGCAGGAAC
Found at i:25807 original size:27 final size:27
Alignment explanation
Indices: 25777--25840 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 27
25767 TGTGCTTACC
*
25777 GTGTTCAGTGTGTTCAGGGTGTTCAGT
1 GTGTTCAGTGTGTTCAGGGTGTTCAGG
* * *
25804 GTGTTCGGTGTTTTCAGGGTGTTTAGG
1 GTGTTCAGTGTGTTCAGGGTGTTCAGG
*
25831 GTGTGCAGTG
1 GTGTTCAGTG
25841 AGTCCAGCAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.09, C:0.09, G:0.41, T:0.41
Consensus pattern (27 bp):
GTGTTCAGTGTGTTCAGGGTGTTCAGG
Left flanking sequence: Indices 25277 -- 25776
GCCGTGGCCGCGGGGTCTCGGGCTCGGGCGTGTTGGCGTCGCTGGCGCCGAACGAGCGGCTCGTT
TTGCGGGTCTGGCGCGGAGGAGCCTGGTTCTTGAGCACGCCGTAGTCGGGTGCCTTGCGAGGCCG
GGTGGGGCCTGGGTAGAGTCGCGAGAACACGTCCAGCTCCGAGCGAGGCATTGCGGGGATCAGCT
GGGACTTTTTGAGTCTCCTGGGCGGCGGGCCGCGTGGCGAGCCCGGGTACGGTGCCGGGTGGGCC
ACGAGCGGTGGTGCCAACGCGGTCTGGACCTTCTTTTCGGGCGAGGCCAGCATGGGTTTCGGTTC
TCGAAGCGGTGGTTTGCCCAGGGTGTCTCGAACGGGTTCGCGAAGGGGTGTTTTTGCGAGGGTGT
CTCGAATGGGTGTTTTCAGGGTGGGGGTGAGCGACGGAAGCGTGGACGGGTTCAAAGTGGTGTTT
TTGGTGGCCGCGTTCACACCGTTGAGTGTGTTGAGTGTGCTTACC
Right flanking sequence: Indices 25841 -- 26340
AGTCCAGCAAGTTCAGCGTGTTTGCCGTATTCACTGCGTTTATCGAGTTCACCGCGTTCACCGCG
TTCACTCCGTTCACTCCGTTGGGTCCACTGGTCCCGTTGGACCTGTTCTTGCCCGAGACCCGCCG
CCGGGCGGTCTTCGAAGGCGAACTGCGCTCCTCGGGCTCAATTGACCCCTCCTTCGGCGAGGTCA
GACCCCGCACGCGGGCCCGGTAGTGGTGCATTCCCTTGCGATCGCCACTGGCACCCAGGCTCGGC
GTCAGCGGAGGCAGCAGCAGCGAGCGAGGAGTAAGCGGAGCCCTCGCAGGAGCCAACAGCCGGAG
CGGGTGGGCTCGCGACTCGACCTTGGTGCGTTTGAACTCCTTTTTCTTCTGGAGCAGCAGCGTGG
TCTCCCGCATGAACCCGAAGTTGGTCGACTCCGCTAGCACTGGCGACTTGGCTGTGCCCGGGGGC
TGTGCGGGTCCGTGGCTGCTCCGGGCGATGTTGATTTGCAGGAAC
Found at i:25819 original size:18 final size:18
Alignment explanation
Indices: 25777--25840 Score: 76
Period size: 18 Copynumber: 3.6 Consensus size: 18
25767 TGTGCTTACC
25777 GTGTTCAGTGTGTTCAGG
1 GTGTTCAGTGTGTTCAGG
25795 GTGTTCAGTGTGTTC-GG
1 GTGTTCAGTGTGTTCAGG
* * *
25812 TGTTTTCAGGGTGTTTAGG
1 -GTGTTCAGTGTGTTCAGG
*
25831 GTGTGCAGTG
1 GTGTTCAGTG
25841 AGTCCAGCAA
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
17 2 0.05
18 34 0.89
19 2 0.05
ACGTcount: A:0.09, C:0.09, G:0.41, T:0.41
Consensus pattern (18 bp):
GTGTTCAGTGTGTTCAGG
Left flanking sequence: Indices 25277 -- 25776
GCCGTGGCCGCGGGGTCTCGGGCTCGGGCGTGTTGGCGTCGCTGGCGCCGAACGAGCGGCTCGTT
TTGCGGGTCTGGCGCGGAGGAGCCTGGTTCTTGAGCACGCCGTAGTCGGGTGCCTTGCGAGGCCG
GGTGGGGCCTGGGTAGAGTCGCGAGAACACGTCCAGCTCCGAGCGAGGCATTGCGGGGATCAGCT
GGGACTTTTTGAGTCTCCTGGGCGGCGGGCCGCGTGGCGAGCCCGGGTACGGTGCCGGGTGGGCC
ACGAGCGGTGGTGCCAACGCGGTCTGGACCTTCTTTTCGGGCGAGGCCAGCATGGGTTTCGGTTC
TCGAAGCGGTGGTTTGCCCAGGGTGTCTCGAACGGGTTCGCGAAGGGGTGTTTTTGCGAGGGTGT
CTCGAATGGGTGTTTTCAGGGTGGGGGTGAGCGACGGAAGCGTGGACGGGTTCAAAGTGGTGTTT
TTGGTGGCCGCGTTCACACCGTTGAGTGTGTTGAGTGTGCTTACC
Right flanking sequence: Indices 25841 -- 26340
AGTCCAGCAAGTTCAGCGTGTTTGCCGTATTCACTGCGTTTATCGAGTTCACCGCGTTCACCGCG
TTCACTCCGTTCACTCCGTTGGGTCCACTGGTCCCGTTGGACCTGTTCTTGCCCGAGACCCGCCG
CCGGGCGGTCTTCGAAGGCGAACTGCGCTCCTCGGGCTCAATTGACCCCTCCTTCGGCGAGGTCA
GACCCCGCACGCGGGCCCGGTAGTGGTGCATTCCCTTGCGATCGCCACTGGCACCCAGGCTCGGC
GTCAGCGGAGGCAGCAGCAGCGAGCGAGGAGTAAGCGGAGCCCTCGCAGGAGCCAACAGCCGGAG
CGGGTGGGCTCGCGACTCGACCTTGGTGCGTTTGAACTCCTTTTTCTTCTGGAGCAGCAGCGTGG
TCTCCCGCATGAACCCGAAGTTGGTCGACTCCGCTAGCACTGGCGACTTGGCTGTGCCCGGGGGC
TGTGCGGGTCCGTGGCTGCTCCGGGCGATGTTGATTTGCAGGAAC
Found at i:25901 original size:9 final size:9
Alignment explanation
Indices: 25887--25919 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
25877 CGTTTATCGA
25887 GTTCACCGC
1 GTTCACCGC
25896 GTTCACCGC
1 GTTCACCGC
25905 GTTCACTC-C
1 GTTCAC-CGC
25914 GTTCAC
1 GTTCAC
25920 TCCGTTGGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 22 0.96
10 1 0.04
ACGTcount: A:0.12, C:0.42, G:0.18, T:0.27
Consensus pattern (9 bp):
GTTCACCGC
Left flanking sequence: Indices 25387 -- 25886
TCGGGTGCCTTGCGAGGCCGGGTGGGGCCTGGGTAGAGTCGCGAGAACACGTCCAGCTCCGAGCG
AGGCATTGCGGGGATCAGCTGGGACTTTTTGAGTCTCCTGGGCGGCGGGCCGCGTGGCGAGCCCG
GGTACGGTGCCGGGTGGGCCACGAGCGGTGGTGCCAACGCGGTCTGGACCTTCTTTTCGGGCGAG
GCCAGCATGGGTTTCGGTTCTCGAAGCGGTGGTTTGCCCAGGGTGTCTCGAACGGGTTCGCGAAG
GGGTGTTTTTGCGAGGGTGTCTCGAATGGGTGTTTTCAGGGTGGGGGTGAGCGACGGAAGCGTGG
ACGGGTTCAAAGTGGTGTTTTTGGTGGCCGCGTTCACACCGTTGAGTGTGTTGAGTGTGCTTACC
GTGTTCAGTGTGTTCAGGGTGTTCAGTGTGTTCGGTGTTTTCAGGGTGTTTAGGGTGTGCAGTGA
GTCCAGCAAGTTCAGCGTGTTTGCCGTATTCACTGCGTTTATCGA
Right flanking sequence: Indices 25920 -- 26419
TCCGTTGGGTCCACTGGTCCCGTTGGACCTGTTCTTGCCCGAGACCCGCCGCCGGGCGGTCTTCG
AAGGCGAACTGCGCTCCTCGGGCTCAATTGACCCCTCCTTCGGCGAGGTCAGACCCCGCACGCGG
GCCCGGTAGTGGTGCATTCCCTTGCGATCGCCACTGGCACCCAGGCTCGGCGTCAGCGGAGGCAG
CAGCAGCGAGCGAGGAGTAAGCGGAGCCCTCGCAGGAGCCAACAGCCGGAGCGGGTGGGCTCGCG
ACTCGACCTTGGTGCGTTTGAACTCCTTTTTCTTCTGGAGCAGCAGCGTGGTCTCCCGCATGAAC
CCGAAGTTGGTCGACTCCGCTAGCACTGGCGACTTGGCTGTGCCCGGGGGCTGTGCGGGTCCGTG
GCTGCTCCGGGCGATGTTGATTTGCAGGAACCGGTGGTTTAGGTCCATACCGGAGCAGGGGTGGG
TTCAGCAGCAAATATAGACGAGCAGGTGAGGCGCAACAGCGGTTT
Found at i:29535 original size:12 final size:12
Alignment explanation
Indices: 29520--29560 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
29510 CACCGAGGCC
29520 AAGGACGAGAAG
1 AAGGACGAGAAG
29532 AAGGA-G-GAA-
1 AAGGACGAGAAG
*
29541 AAGGAAGAGAAG
1 AAGGACGAGAAG
29553 AAGGACGA
1 AAGGACGA
29561 CGACGACTCC
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
9 5 0.20
10 4 0.16
11 4 0.16
12 12 0.48
ACGTcount: A:0.54, C:0.05, G:0.41, T:0.00
Consensus pattern (12 bp):
AAGGACGAGAAG
Left flanking sequence: Indices 29020 -- 29519
ACGACGACGTGTTGGCGTTGTTGTTGCCGTTGGTGTCCGACACCGAGGTGCTGTTGGAGGTGCTG
CTGTTGGCGGCGTTGGCGCTCGGGCACGTGTTTGTCGGCACCTGCCACGGCGACATCACGCTGAC
GATTTTGCAGACGCTCTTGGAGCGTGACTTCAACGCGTTGGCCAACAAATACATCAAGTTCATGC
TGCTTGGGTTGGGGCTCTTGTACATGCTGAAGACCGAGGCAGTGGAGGACGTGTTGGAGACCATC
GACGCCATCGAGCACCCCATCGCCAAGACCCTCAAGGTGTTGGTCAACATCTGTGCCTACGCGGG
CACCGGCAACGTGTTGCAGATCCAGCTGTTGTTGCAGATGTGCACCGCGCGCCCGAAGGAGGCGG
CGAAGCCGGTGGAGGACGACGACGAGCCCGCGGACGCGAAGCCCGACCCGGTGCTTGGCGACGGC
GACGTCGAGATGGCCGACGCCGACGCCTCCGAGCCCACCGAGGCC
Right flanking sequence: Indices 29561 -- 30060
CGACGACTCCGACGACGACTCCGAAGAAGAGCTCTACCAGGGCATCGCCGTGCTCGGGCTCGCGC
TCATCGCCATGGGCGAGGACATCGGCCAGGACATGCTGTTGCGCCACTTTGCCCACCTCATGCAC
TACGGCAACCCCCTCATCAAGCGCGCGGTGCCGCTTGCCATGGGCCTTGTGCTGGCGCTGAACCC
GCAGATGAAGGTGTTTGACACGTTGCTGCGGTACTCGCACGACCCCGACCTCGAGGTGGCCCAGA
ACGCCATCTACCTGATGGGGTTGGTGGGTGCGGGCACCAACAACGCCCGGTTGGCGCAGTTGTTG
CGCCAGTTGGCGCTGTACTACGTCAAGCTGCCCGACTCGTTGTTCATGGTGCGGATTGCCCAGGG
GCTCTTGCACATGGGCAAGGGCACGCTCACGCTCAACCCGTTCAACTGCGAGCGGCTGATTCTCT
CCAAGGTGCTGTTGGCGTCGTTGCTCACCATCCTGGTGGCGCTCT
Found at i:29573 original size:12 final size:12
Alignment explanation
Indices: 29558--29584 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
29548 AGAAGAAGGA
29558 CGACGACGACTC
1 CGACGACGACTC
29570 CGACGACGACTC
1 CGACGACGACTC
29582 CGA
1 CGA
29585 AGAAGAGCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.41, G:0.26, T:0.07
Consensus pattern (12 bp):
CGACGACGACTC
Left flanking sequence: Indices 29058 -- 29557
GACACCGAGGTGCTGTTGGAGGTGCTGCTGTTGGCGGCGTTGGCGCTCGGGCACGTGTTTGTCGG
CACCTGCCACGGCGACATCACGCTGACGATTTTGCAGACGCTCTTGGAGCGTGACTTCAACGCGT
TGGCCAACAAATACATCAAGTTCATGCTGCTTGGGTTGGGGCTCTTGTACATGCTGAAGACCGAG
GCAGTGGAGGACGTGTTGGAGACCATCGACGCCATCGAGCACCCCATCGCCAAGACCCTCAAGGT
GTTGGTCAACATCTGTGCCTACGCGGGCACCGGCAACGTGTTGCAGATCCAGCTGTTGTTGCAGA
TGTGCACCGCGCGCCCGAAGGAGGCGGCGAAGCCGGTGGAGGACGACGACGAGCCCGCGGACGCG
AAGCCCGACCCGGTGCTTGGCGACGGCGACGTCGAGATGGCCGACGCCGACGCCTCCGAGCCCAC
CGAGGCCAAGGACGAGAAGAAGGAGGAAAAGGAAGAGAAGAAGGA
Right flanking sequence: Indices 29585 -- 30084
AGAAGAGCTCTACCAGGGCATCGCCGTGCTCGGGCTCGCGCTCATCGCCATGGGCGAGGACATCG
GCCAGGACATGCTGTTGCGCCACTTTGCCCACCTCATGCACTACGGCAACCCCCTCATCAAGCGC
GCGGTGCCGCTTGCCATGGGCCTTGTGCTGGCGCTGAACCCGCAGATGAAGGTGTTTGACACGTT
GCTGCGGTACTCGCACGACCCCGACCTCGAGGTGGCCCAGAACGCCATCTACCTGATGGGGTTGG
TGGGTGCGGGCACCAACAACGCCCGGTTGGCGCAGTTGTTGCGCCAGTTGGCGCTGTACTACGTC
AAGCTGCCCGACTCGTTGTTCATGGTGCGGATTGCCCAGGGGCTCTTGCACATGGGCAAGGGCAC
GCTCACGCTCAACCCGTTCAACTGCGAGCGGCTGATTCTCTCCAAGGTGCTGTTGGCGTCGTTGC
TCACCATCCTGGTGGCGCTCTTGGACCCCAAGCTGTTTGTGTTGT
Found at i:30491 original size:11 final size:11
Alignment explanation
Indices: 30475--30507 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
30465 AGTGGTGGAG
30475 GGTGCACTGGT
1 GGTGCACTGGT
30486 GGTGCACTGGT
1 GGTGCACTGGT
*
30497 GGTGTACTGGT
1 GGTGCACTGGT
30508 ATTGAAGTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.09, C:0.15, G:0.45, T:0.30
Consensus pattern (11 bp):
GGTGCACTGGT
Left flanking sequence: Indices 29975 -- 30474
GCTCACGCTCAACCCGTTCAACTGCGAGCGGCTGATTCTCTCCAAGGTGCTGTTGGCGTCGTTGC
TCACCATCCTGGTGGCGCTCTTGGACCCCAAGCTGTTTGTGTTGTCGGACGCGGCCGGCGAGACC
TCGCACGAGGTGTTGTACTACTTGTGTCCCGCGATCAAGCCGCGGATGCTCATCACCGTGGACGA
GGAGTTGAATCCCGTCAAGGTGAACGTGCGGGTGGGCCAGCTGGTGGACGTGGTGGGCCAGGCAG
GCAAGCCCAAGACCATCACCGGGTGGGTGACCCAGCTGACGCCCGTGTTGCTCAACTACGGCGAG
CGGGCGGAGTTGGAGAACGACGAGTGGTTGGCGTTGTCGCACTCGTTGGAGGGGGTGGTGATTTT
GAAGAAGAACCCGGAGTACGAGGAGGCGTAACCGCCATGACTGATGAACGCGTATACATAATTGA
TAAAGAAGGTATAGAAGGGGTGAACGTGTGGTTGTAGTGGTGGAG
Right flanking sequence: Indices 30508 -- 31007
ATTGAAGTGGTTATAGTGGTGGATATAGTGGGTGGATGTAGTGGGTGGTTAGAGTAGGTGGTTAG
AGTAGGTGGTTAGAGTGGGTGGTTGAAGTGGGTAGTTAGAGTGAGTGATCAGAGTAGGTGGTGGT
CAGAACGAGTGGGGTCAAACGGCTTGCAATTGGTGGACTTGAATTTCAGCAGACTTGAATTTCAG
CAGTCGCACCCGTCGTATTTGGGTTGTGTTAGATGACTAGTCGCAGTTGACTCACGCGATATCTG
CGTGTGGTAGACTAGTGAACTAATGGGAAACCAACGTCCAGAGAATTAAAAAGGCGACTGGGTGT
TTGTGGCCAGGCATTGGGACGTTGTTCCATTCGAACCACCTTTCCGATCCCATTCCCCGGATTGT
CTCCACGAAAAAGATTTGAGCTATGACGTCAAATAATACGAGCGGTCGGAATGACGTGGGGACGA
CAAAACCTTATTATAACACATATATAAACCTTCCATTTGGGACAT
Found at i:30543 original size:13 final size:13
Alignment explanation
Indices: 30514--30634 Score: 104
Period size: 13 Copynumber: 9.4 Consensus size: 13
30504 TGGTATTGAA
*
30514 GTGGTTATAGT-G
1 GTGGTTAGAGTGG
* *
30526 GTGGATATAGTGG
1 GTGGTTAGAGTGG
*
30539 GTGGAT-GTAGTGG
1 GTGGTTAG-AGTGG
*
30552 GTGGTTAGAGTAG
1 GTGGTTAGAGTGG
*
30565 GTGGTTAGAGTAG
1 GTGGTTAGAGTGG
30578 GTGGTTAGAGTGG
1 GTGGTTAGAGTGG
30591 GTGGTT-GAAGTGG
1 GTGGTTAG-AGTGG
* *
30604 GTAGTTAGAGTGA
1 GTGGTTAGAGTGG
* * *
30617 GTGATCAGAGTAG
1 GTGGTTAGAGTGG
30630 GTGGT
1 GTGGT
30635 GGTCAGAACG
Statistics
Matches: 91, Mismatches: 13, Indels: 9
0.81 0.12 0.08
Matches are distributed among these distances:
12 11 0.12
13 78 0.86
14 2 0.02
ACGTcount: A:0.21, C:0.01, G:0.47, T:0.31
Consensus pattern (13 bp):
GTGGTTAGAGTGG
Left flanking sequence: Indices 30014 -- 30513
CTCCAAGGTGCTGTTGGCGTCGTTGCTCACCATCCTGGTGGCGCTCTTGGACCCCAAGCTGTTTG
TGTTGTCGGACGCGGCCGGCGAGACCTCGCACGAGGTGTTGTACTACTTGTGTCCCGCGATCAAG
CCGCGGATGCTCATCACCGTGGACGAGGAGTTGAATCCCGTCAAGGTGAACGTGCGGGTGGGCCA
GCTGGTGGACGTGGTGGGCCAGGCAGGCAAGCCCAAGACCATCACCGGGTGGGTGACCCAGCTGA
CGCCCGTGTTGCTCAACTACGGCGAGCGGGCGGAGTTGGAGAACGACGAGTGGTTGGCGTTGTCG
CACTCGTTGGAGGGGGTGGTGATTTTGAAGAAGAACCCGGAGTACGAGGAGGCGTAACCGCCATG
ACTGATGAACGCGTATACATAATTGATAAAGAAGGTATAGAAGGGGTGAACGTGTGGTTGTAGTG
GTGGAGGGTGCACTGGTGGTGCACTGGTGGTGTACTGGTATTGAA
Right flanking sequence: Indices 30635 -- 31134
GGTCAGAACGAGTGGGGTCAAACGGCTTGCAATTGGTGGACTTGAATTTCAGCAGACTTGAATTT
CAGCAGTCGCACCCGTCGTATTTGGGTTGTGTTAGATGACTAGTCGCAGTTGACTCACGCGATAT
CTGCGTGTGGTAGACTAGTGAACTAATGGGAAACCAACGTCCAGAGAATTAAAAAGGCGACTGGG
TGTTTGTGGCCAGGCATTGGGACGTTGTTCCATTCGAACCACCTTTCCGATCCCATTCCCCGGAT
TGTCTCCACGAAAAAGATTTGAGCTATGACGTCAAATAATACGAGCGGTCGGAATGACGTGGGGA
CGACAAAACCTTATTATAACACATATATAAACCTTCCATTTGGGACATCCATAAATCAACACCCT
ACTTTCATTTCCTATGGGCAACACAACTTCTAGACAACGCAGACGCGAGCGCTCTCTGAGCTACA
GTAAGTCGACCACGGGCCGGTCCCGGTACAGTGGCGGTGCTGGAG
Found at i:30694 original size:16 final size:16
Alignment explanation
Indices: 30673--30705 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
30663 GCAATTGGTG
30673 GACTTGAATTTCAGCA
1 GACTTGAATTTCAGCA
30689 GACTTGAATTTCAGCA
1 GACTTGAATTTCAGCA
30705 G
1 G
30706 TCGCACCCGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (16 bp):
GACTTGAATTTCAGCA
Left flanking sequence: Indices 30173 -- 30672
GTTGAATCCCGTCAAGGTGAACGTGCGGGTGGGCCAGCTGGTGGACGTGGTGGGCCAGGCAGGCA
AGCCCAAGACCATCACCGGGTGGGTGACCCAGCTGACGCCCGTGTTGCTCAACTACGGCGAGCGG
GCGGAGTTGGAGAACGACGAGTGGTTGGCGTTGTCGCACTCGTTGGAGGGGGTGGTGATTTTGAA
GAAGAACCCGGAGTACGAGGAGGCGTAACCGCCATGACTGATGAACGCGTATACATAATTGATAA
AGAAGGTATAGAAGGGGTGAACGTGTGGTTGTAGTGGTGGAGGGTGCACTGGTGGTGCACTGGTG
GTGTACTGGTATTGAAGTGGTTATAGTGGTGGATATAGTGGGTGGATGTAGTGGGTGGTTAGAGT
AGGTGGTTAGAGTAGGTGGTTAGAGTGGGTGGTTGAAGTGGGTAGTTAGAGTGAGTGATCAGAGT
AGGTGGTGGTCAGAACGAGTGGGGTCAAACGGCTTGCAATTGGTG
Right flanking sequence: Indices 30706 -- 31205
TCGCACCCGTCGTATTTGGGTTGTGTTAGATGACTAGTCGCAGTTGACTCACGCGATATCTGCGT
GTGGTAGACTAGTGAACTAATGGGAAACCAACGTCCAGAGAATTAAAAAGGCGACTGGGTGTTTG
TGGCCAGGCATTGGGACGTTGTTCCATTCGAACCACCTTTCCGATCCCATTCCCCGGATTGTCTC
CACGAAAAAGATTTGAGCTATGACGTCAAATAATACGAGCGGTCGGAATGACGTGGGGACGACAA
AACCTTATTATAACACATATATAAACCTTCCATTTGGGACATCCATAAATCAACACCCTACTTTC
ATTTCCTATGGGCAACACAACTTCTAGACAACGCAGACGCGAGCGCTCTCTGAGCTACAGTAAGT
CGACCACGGGCCGGTCCCGGTACAGTGGCGGTGCTGGAGGCTTTTTTGGCGGGTTCGGTGGTGGT
GACGGTGGTGGAGGATATGGTGGCGGCGGTGGAGATGGTGGTGGT
Found at i:31202 original size:21 final size:22
Alignment explanation
Indices: 31154--31216 Score: 65
Period size: 21 Copynumber: 2.8 Consensus size: 22
31144 GCGGGTTCGG
* *
31154 TGGTGGTGACGGTGGTGGAGGA
1 TGGTGGTGGCGGCGGTGGAGGA
* *
31176 T-ATGGTGGCGGCGGTGGAGATGG
1 TGGTGGTGGCGGCGGTGGAG--GA
31199 TGGTGGTGGCGGCGGTGG
1 TGGTGGTGGCGGCGGTGG
31217 TTGCGGAGGC
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
21 15 0.45
22 1 0.03
23 2 0.06
24 15 0.45
ACGTcount: A:0.10, C:0.08, G:0.60, T:0.22
Consensus pattern (22 bp):
TGGTGGTGGCGGCGGTGGAGGA
Left flanking sequence: Indices 30654 -- 31153
AAACGGCTTGCAATTGGTGGACTTGAATTTCAGCAGACTTGAATTTCAGCAGTCGCACCCGTCGT
ATTTGGGTTGTGTTAGATGACTAGTCGCAGTTGACTCACGCGATATCTGCGTGTGGTAGACTAGT
GAACTAATGGGAAACCAACGTCCAGAGAATTAAAAAGGCGACTGGGTGTTTGTGGCCAGGCATTG
GGACGTTGTTCCATTCGAACCACCTTTCCGATCCCATTCCCCGGATTGTCTCCACGAAAAAGATT
TGAGCTATGACGTCAAATAATACGAGCGGTCGGAATGACGTGGGGACGACAAAACCTTATTATAA
CACATATATAAACCTTCCATTTGGGACATCCATAAATCAACACCCTACTTTCATTTCCTATGGGC
AACACAACTTCTAGACAACGCAGACGCGAGCGCTCTCTGAGCTACAGTAAGTCGACCACGGGCCG
GTCCCGGTACAGTGGCGGTGCTGGAGGCTTTTTTGGCGGGTTCGG
Right flanking sequence: Indices 31217 -- 31716
TTGCGGAGGCGGAGGCGGAGACGGCGGCGGCGGCGGCGGCGGCTGTTGATGATAACAGGTTGAGA
TTATGTATTAATGAAAATTGTGAGCATATGTGGGATTGATGTAGGAGTCGGGCCTTGGGCGTACT
AAAAGTACAGTGTCAAGTGGAAGCAGATCTAACCATAGATTCAATCTCGGCGGTTCGACCAAGTT
AGTTCTAACCGGTGACTCAATGACCGCATTACGAACCCCAGCCGTTACTACCACCCTAAAACACC
ACTCTTCTACCTTCAATTGCTCAATTAAACCGACGCACGCTTTCTCACACCCCGTCAACCCCACC
TACAGTTCCCGGACCTTTGCCACCAATCGTGCTCACCACGTCTGGACCACAAAAATACCACACTA
CCACAGCACACCACACCAACAGGTTATCAGCAACACCACCACACCTGCTGTCGCCACCTTCTTCA
CCCCACACCCAACTTCTCACCCACTACCCACCTTATCGCCCTTGC
Found at i:31259 original size:12 final size:12
Alignment explanation
Indices: 31219--31258 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
31209 GGCGGTGGTT
*
31219 GCGGAGGCGGAG
1 GCGGAGGCGGCG
*
31231 GCGGAGACGGCG
1 GCGGAGGCGGCG
*
31243 GCGGCGGCGGCG
1 GCGGAGGCGGCG
31255 GCGG
1 GCGG
31259 CTGTTGATGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.10, C:0.25, G:0.65, T:0.00
Consensus pattern (12 bp):
GCGGAGGCGGCG
Left flanking sequence: Indices 30719 -- 31218
ATTTGGGTTGTGTTAGATGACTAGTCGCAGTTGACTCACGCGATATCTGCGTGTGGTAGACTAGT
GAACTAATGGGAAACCAACGTCCAGAGAATTAAAAAGGCGACTGGGTGTTTGTGGCCAGGCATTG
GGACGTTGTTCCATTCGAACCACCTTTCCGATCCCATTCCCCGGATTGTCTCCACGAAAAAGATT
TGAGCTATGACGTCAAATAATACGAGCGGTCGGAATGACGTGGGGACGACAAAACCTTATTATAA
CACATATATAAACCTTCCATTTGGGACATCCATAAATCAACACCCTACTTTCATTTCCTATGGGC
AACACAACTTCTAGACAACGCAGACGCGAGCGCTCTCTGAGCTACAGTAAGTCGACCACGGGCCG
GTCCCGGTACAGTGGCGGTGCTGGAGGCTTTTTTGGCGGGTTCGGTGGTGGTGACGGTGGTGGAG
GATATGGTGGCGGCGGTGGAGATGGTGGTGGTGGCGGCGGTGGTT
Right flanking sequence: Indices 31259 -- 31758
CTGTTGATGATAACAGGTTGAGATTATGTATTAATGAAAATTGTGAGCATATGTGGGATTGATGT
AGGAGTCGGGCCTTGGGCGTACTAAAAGTACAGTGTCAAGTGGAAGCAGATCTAACCATAGATTC
AATCTCGGCGGTTCGACCAAGTTAGTTCTAACCGGTGACTCAATGACCGCATTACGAACCCCAGC
CGTTACTACCACCCTAAAACACCACTCTTCTACCTTCAATTGCTCAATTAAACCGACGCACGCTT
TCTCACACCCCGTCAACCCCACCTACAGTTCCCGGACCTTTGCCACCAATCGTGCTCACCACGTC
TGGACCACAAAAATACCACACTACCACAGCACACCACACCAACAGGTTATCAGCAACACCACCAC
ACCTGCTGTCGCCACCTTCTTCACCCCACACCCAACTTCTCACCCACTACCCACCTTATCGCCCT
TGCAGCAACGCGCGCTCGACACTTAAACTCCAGCACGTTTACCAC
Found at i:57005 original size:30 final size:30
Alignment explanation
Indices: 56936--57077 Score: 182
Period size: 30 Copynumber: 4.8 Consensus size: 30
56926 GGAAGAGGAA
* * * *
56936 GAGGGGGTAGTGGAGGGGGCAGTGGT--AG
1 GAGGGGGTGGTGGTGGGAGCAGTGGTGGAC
* * * * *
56964 GA-GGAGTGGTGGTGGGCGCACTGGTCGTC
1 GAGGGGGTGGTGGTGGGAGCAGTGGTGGAC
56993 GAGGGGGTGGTGGTGGGAGCAGTGGTGGAC
1 GAGGGGGTGGTGGTGGGAGCAGTGGTGGAC
57023 GAGGGGGTGGTGGTGGGAGCAGTGGTGGAC
1 GAGGGGGTGGTGGTGGGAGCAGTGGTGGAC
57053 GAGGGGGTGGTGGTGGGAGCAGTGG
1 GAGGGGGTGGTGGTGGGAGCAGTGG
57078 AGGCCGAGCT
Statistics
Matches: 99, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
27 18 0.18
28 2 0.02
29 2 0.02
30 77 0.78
ACGTcount: A:0.13, C:0.08, G:0.62, T:0.17
Consensus pattern (30 bp):
GAGGGGGTGGTGGTGGGAGCAGTGGTGGAC
Left flanking sequence: Indices 56436 -- 56935
ACTTGGGGAGCACGTTCTCCTTGGCCCGGGACATGATGTTACCCTTGGGAGTGTACTCACACACA
ATGTACCAGCCATTGCCCTCAGCAGCACAATTCTTAGCGGCACAGCCCAAGCCAAGCGACAGCTT
CCACACCATCTGGGTGAAGTGCAGCGCCTTGGGGTTGTTGTAGTCGTAGTCAGTGTTTTCGTCAT
ACCACACCTGGACACCCTGGAGCGGGTTGGAAGGGGACCAGCCCATCGAGAGGTTCTCACCAAAC
GGGTTGTTGCTGGAGTGGGTAAGCGAGTAGTCATTGCAGTCTTTGGCATCCACCATCTTCTTGGC
ATAGTCAAACGCCTCTGACGACCACGACATGGGGCACGCGTGGTGGTCCTTACGCTTCTCGTTGT
GGAAGTCCAAGATCAGGCGGGCAAAGGTCTCGTTGACACCAGAAGAGCTGGCAATTTGGTCGTAG
AGACCGGTGGTGACACAGCTGTCAGACAGAGTAGAGGAAGAGGAA
Right flanking sequence: Indices 57078 -- 57577
AGGCCGAGCTGCCAGTAGAAGTACCGCTGGTACCATCAGTAGCAGCACCGGTACCCGAGTTGCCG
TCAGTGGCCGCACCAGTGCCCGAGTTGCCGTCGGTAGCAGCGCCAGTACCAGAGTTACCGTCGGT
TGCAGAACCCGTTCCAGAGTTACCACCAGTAGCCGATCCGGTGGGCTTCAGACCCGACAACGAAT
CGTCAGTGGGGGCGACCACACCGGAGCCAGTATCAGAGGGGTTACCAGTGGGGCCAGAGGGGTTG
CCGGTAGGGTTCCCAGAGGGGTTTCCCGAGGTGTTGCCGGTGGGCTTGGGACCTTCACCAGTGTC
GGTCTCCACGGGACCAACGACACCACCGCCATTGGAGTTAGGGTTGATCTCCACAGTCGTGGTGC
AAGCACCAGTCTTGGGGCAAATAATCACCGTGGTGGTGGGATTGCCAGGAGGAGGAATAATCTTC
GTGGTACAAACTCCATCGAGCTGGCAGTACACTTCGCCCTTCTTG
Found at i:57017 original size:15 final size:15
Alignment explanation
Indices: 56999--57077 Score: 58
Period size: 15 Copynumber: 5.3 Consensus size: 15
56989 CGTCGAGGGG
56999 GTGGTGGTGGGAGCA
1 GTGGTGGTGGGAGCA
* *
57014 GTGGTGGACGAGG-G-G
1 GTGGTGG-TG-GGAGCA
57029 GTGGTGGTGGGAGCA
1 GTGGTGGTGGGAGCA
* *
57044 GTGGTGGACGAGG-G-G
1 GTGGTGG-TG-GGAGCA
57059 GTGGTGGTGGGAGCA
1 GTGGTGGTGGGAGCA
57074 GTGG
1 GTGG
57078 AGGCCGAGCT
Statistics
Matches: 48, Mismatches: 8, Indels: 16
0.67 0.11 0.22
Matches are distributed among these distances:
13 4 0.08
14 4 0.08
15 32 0.67
16 4 0.08
17 4 0.08
ACGTcount: A:0.13, C:0.06, G:0.63, T:0.18
Consensus pattern (15 bp):
GTGGTGGTGGGAGCA
Left flanking sequence: Indices 56499 -- 56998
CAATGTACCAGCCATTGCCCTCAGCAGCACAATTCTTAGCGGCACAGCCCAAGCCAAGCGACAGC
TTCCACACCATCTGGGTGAAGTGCAGCGCCTTGGGGTTGTTGTAGTCGTAGTCAGTGTTTTCGTC
ATACCACACCTGGACACCCTGGAGCGGGTTGGAAGGGGACCAGCCCATCGAGAGGTTCTCACCAA
ACGGGTTGTTGCTGGAGTGGGTAAGCGAGTAGTCATTGCAGTCTTTGGCATCCACCATCTTCTTG
GCATAGTCAAACGCCTCTGACGACCACGACATGGGGCACGCGTGGTGGTCCTTACGCTTCTCGTT
GTGGAAGTCCAAGATCAGGCGGGCAAAGGTCTCGTTGACACCAGAAGAGCTGGCAATTTGGTCGT
AGAGACCGGTGGTGACACAGCTGTCAGACAGAGTAGAGGAAGAGGAAGAGGGGGTAGTGGAGGGG
GCAGTGGTAGGAGGAGTGGTGGTGGGCGCACTGGTCGTCGAGGGG
Right flanking sequence: Indices 57078 -- 57577
AGGCCGAGCTGCCAGTAGAAGTACCGCTGGTACCATCAGTAGCAGCACCGGTACCCGAGTTGCCG
TCAGTGGCCGCACCAGTGCCCGAGTTGCCGTCGGTAGCAGCGCCAGTACCAGAGTTACCGTCGGT
TGCAGAACCCGTTCCAGAGTTACCACCAGTAGCCGATCCGGTGGGCTTCAGACCCGACAACGAAT
CGTCAGTGGGGGCGACCACACCGGAGCCAGTATCAGAGGGGTTACCAGTGGGGCCAGAGGGGTTG
CCGGTAGGGTTCCCAGAGGGGTTTCCCGAGGTGTTGCCGGTGGGCTTGGGACCTTCACCAGTGTC
GGTCTCCACGGGACCAACGACACCACCGCCATTGGAGTTAGGGTTGATCTCCACAGTCGTGGTGC
AAGCACCAGTCTTGGGGCAAATAATCACCGTGGTGGTGGGATTGCCAGGAGGAGGAATAATCTTC
GTGGTACAAACTCCATCGAGCTGGCAGTACACTTCGCCCTTCTTG
Found at i:57147 original size:30 final size:30
Alignment explanation
Indices: 57113--57204 Score: 112
Period size: 30 Copynumber: 3.1 Consensus size: 30
57103 GCTGGTACCA
*
57113 TCAGTAGCAGCACCGGTACCCGAGTTGCCG
1 TCAGTAGCAGCACCAGTACCCGAGTTGCCG
* * *
57143 TCAGTGGCCGCACCAGTGCCCGAGTTGCCG
1 TCAGTAGCAGCACCAGTACCCGAGTTGCCG
* * * *
57173 TCGGTAGCAGCGCCAGTACCAGAGTTACCG
1 TCAGTAGCAGCACCAGTACCCGAGTTGCCG
57203 TC
1 TC
57205 GGTTGCAGAA
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 51 1.00
ACGTcount: A:0.18, C:0.34, G:0.30, T:0.17
Consensus pattern (30 bp):
TCAGTAGCAGCACCAGTACCCGAGTTGCCG
Left flanking sequence: Indices 56613 -- 57112
AGTCAGTGTTTTCGTCATACCACACCTGGACACCCTGGAGCGGGTTGGAAGGGGACCAGCCCATC
GAGAGGTTCTCACCAAACGGGTTGTTGCTGGAGTGGGTAAGCGAGTAGTCATTGCAGTCTTTGGC
ATCCACCATCTTCTTGGCATAGTCAAACGCCTCTGACGACCACGACATGGGGCACGCGTGGTGGT
CCTTACGCTTCTCGTTGTGGAAGTCCAAGATCAGGCGGGCAAAGGTCTCGTTGACACCAGAAGAG
CTGGCAATTTGGTCGTAGAGACCGGTGGTGACACAGCTGTCAGACAGAGTAGAGGAAGAGGAAGA
GGGGGTAGTGGAGGGGGCAGTGGTAGGAGGAGTGGTGGTGGGCGCACTGGTCGTCGAGGGGGTGG
TGGTGGGAGCAGTGGTGGACGAGGGGGTGGTGGTGGGAGCAGTGGTGGACGAGGGGGTGGTGGTG
GGAGCAGTGGAGGCCGAGCTGCCAGTAGAAGTACCGCTGGTACCA
Right flanking sequence: Indices 57205 -- 57704
GGTTGCAGAACCCGTTCCAGAGTTACCACCAGTAGCCGATCCGGTGGGCTTCAGACCCGACAACG
AATCGTCAGTGGGGGCGACCACACCGGAGCCAGTATCAGAGGGGTTACCAGTGGGGCCAGAGGGG
TTGCCGGTAGGGTTCCCAGAGGGGTTTCCCGAGGTGTTGCCGGTGGGCTTGGGACCTTCACCAGT
GTCGGTCTCCACGGGACCAACGACACCACCGCCATTGGAGTTAGGGTTGATCTCCACAGTCGTGG
TGCAAGCACCAGTCTTGGGGCAAATAATCACCGTGGTGGTGGGATTGCCAGGAGGAGGAATAATC
TTCGTGGTACAAACTCCATCGAGCTGGCAGTACACTTCGCCCTTCTTGGGAGGGTCGGTGGTGGT
GGGAGGGGACACAATCGTCGTGGTACACACAACGTTCTGGTCGTTGGTGTAGGTGACGGTTTGGG
TGGGGGGGGTCACAAACGCCCCGTTGCTGGCCTTGGAGCAGCACT
Found at i:57205 original size:30 final size:30
Alignment explanation
Indices: 57116--57231 Score: 106
Period size: 30 Copynumber: 3.9 Consensus size: 30
57106 GGTACCATCA
* * * *
57116 GTAGCAGCACCGGTACCCGAGTTGCCGTCA
1 GTAGCAGCACCAGTACCAGAGTTACCGTCG
* * * * *
57146 GTGGCCGCACCAGTGCCCGAGTTGCCGTCG
1 GTAGCAGCACCAGTACCAGAGTTACCGTCG
*
57176 GTAGCAGCGCCAGTACCAGAGTTACCGTCG
1 GTAGCAGCACCAGTACCAGAGTTACCGTCG
* * * *
57206 GTTGCAGAACCCGTTCCAGAGTTACC
1 GTAGCAGCACCAGTACCAGAGTTACC
57232 ACCAGTAGCC
Statistics
Matches: 70, Mismatches: 16, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 70 1.00
ACGTcount: A:0.19, C:0.33, G:0.30, T:0.18
Consensus pattern (30 bp):
GTAGCAGCACCAGTACCAGAGTTACCGTCG
Left flanking sequence: Indices 56616 -- 57115
CAGTGTTTTCGTCATACCACACCTGGACACCCTGGAGCGGGTTGGAAGGGGACCAGCCCATCGAG
AGGTTCTCACCAAACGGGTTGTTGCTGGAGTGGGTAAGCGAGTAGTCATTGCAGTCTTTGGCATC
CACCATCTTCTTGGCATAGTCAAACGCCTCTGACGACCACGACATGGGGCACGCGTGGTGGTCCT
TACGCTTCTCGTTGTGGAAGTCCAAGATCAGGCGGGCAAAGGTCTCGTTGACACCAGAAGAGCTG
GCAATTTGGTCGTAGAGACCGGTGGTGACACAGCTGTCAGACAGAGTAGAGGAAGAGGAAGAGGG
GGTAGTGGAGGGGGCAGTGGTAGGAGGAGTGGTGGTGGGCGCACTGGTCGTCGAGGGGGTGGTGG
TGGGAGCAGTGGTGGACGAGGGGGTGGTGGTGGGAGCAGTGGTGGACGAGGGGGTGGTGGTGGGA
GCAGTGGAGGCCGAGCTGCCAGTAGAAGTACCGCTGGTACCATCA
Right flanking sequence: Indices 57232 -- 57731
ACCAGTAGCCGATCCGGTGGGCTTCAGACCCGACAACGAATCGTCAGTGGGGGCGACCACACCGG
AGCCAGTATCAGAGGGGTTACCAGTGGGGCCAGAGGGGTTGCCGGTAGGGTTCCCAGAGGGGTTT
CCCGAGGTGTTGCCGGTGGGCTTGGGACCTTCACCAGTGTCGGTCTCCACGGGACCAACGACACC
ACCGCCATTGGAGTTAGGGTTGATCTCCACAGTCGTGGTGCAAGCACCAGTCTTGGGGCAAATAA
TCACCGTGGTGGTGGGATTGCCAGGAGGAGGAATAATCTTCGTGGTACAAACTCCATCGAGCTGG
CAGTACACTTCGCCCTTCTTGGGAGGGTCGGTGGTGGTGGGAGGGGACACAATCGTCGTGGTACA
CACAACGTTCTGGTCGTTGGTGTAGGTGACGGTTTGGGTGGGGGGGGTCACAAACGCCCCGTTGC
TGGCCTTGGAGCAGCACTTGTAAATAGTGACTGTTTTCTGGGCAG
Found at i:60657 original size:15 final size:15
Alignment explanation
Indices: 60637--60668 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
60627 TCTACTCGGA
60637 CTTTTTCTCCTTCTT
1 CTTTTTCTCCTTCTT
*
60652 CTTTTTCTCCTTTTT
1 CTTTTTCTCCTTCTT
60667 CT
1 CT
60669 CCTTCTTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (15 bp):
CTTTTTCTCCTTCTT
Left flanking sequence: Indices 60137 -- 60636
CAGAGCGTCGTTGAGATCAAGTGGATTCTGCTCACGAGACTGGATTTGCCGGCCCAACTTGGTGA
TACTGGAAATAAAATCGGTGTCATACGTCAGGGTGCCATCCATTTGGGGGTCCATACCGTCCTTC
CCTGGTGGCATAGGAGGCATGGGACCTCCGGACCCCTTGTTTTTGAGCTTCTTCGTGAGCTTTGC
GGCATCAAACTGAAGAGCACCTGGCAGCTGAGACTGGCCGTGAGCCTGGGGTTGGGGGGTGAACG
GAGGTTGTGTGGGAGGGTTCAAAGGGAGTTGCGGTGTCTCCTTTAGCGGGGTAGTTGCCTTGGAT
ATAGTCTTCCCTAGCTGGCGCTGGGTGCTTGGTTTGTTGCCCATTGTGGTCAAGCTTATGATTTT
CGGAGGCTTTATGCAGCGCGAATGGTAAGCAATGTGTACCCAGAGAGAACCCAAACAGGGGTTCG
AATAATACAAAACAGGTTCATTATATGCAAATCTATCTACTCGGA
Right flanking sequence: Indices 60669 -- 61168
CCTTCTTTTCCTTCTTCTCCTTCTTATCGCTCTTGGACTCCTTATCACTCTTGTCTGTCTTTGAC
TTCTTCTTTTTCAGCTCCCCGCCATCTGCCGAACGCTTTTTCAGAACCACAGGCGCAGCCTCGGA
GTAGTCAGCAGCCCCATAACCCGTGGGGAAGTGGCGCATCCGGAGGTCGTCCACCTGCTCAACGT
CAACCCTTTGAACACGAGCAGCGTCAAAGTCAATTTCGGGAATGACAGCCCGCTCACGAATATTG
TAGAACCGCGAAATGGGCGCTTTGCATCGCTTGGTCAGGCCTGACTTGTCACCAGCGAGGATAGT
GTATTTGTCGGTGTCCACGTCTGCGGTCAAAAACTCCTCGTTGACAGTGAAGTTGGCGCCACCCG
AGGTGAACGACTTGGGGTTGTGTGAGAGCAGCTTAGCAGCAAACAGAACGGGAAGGGCTTTGAGC
TTGTCCATCTTAAACCCTTTAGGAGCCTTGATCAACCAAACTTCC
Found at i:60683 original size:24 final size:24
Alignment explanation
Indices: 60637--60690 Score: 72
Period size: 24 Copynumber: 2.1 Consensus size: 24
60627 TCTACTCGGA
*
60637 CTTTTTCTCCTTCTTCTTTTTCTC
1 CTTTTTCTCCTTCTTCTTCTTCTC
60661 CTTTTTCTCCTTCTTTTCCTTCTTCTC
1 CTTTTTCTCCTTC--TT-CTTCTTCTC
60688 CTT
1 CTT
60691 CTTATCGCTC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
24 13 0.50
26 2 0.08
27 11 0.42
ACGTcount: A:0.00, C:0.35, G:0.00, T:0.65
Consensus pattern (24 bp):
CTTTTTCTCCTTCTTCTTCTTCTC
Left flanking sequence: Indices 60137 -- 60636
CAGAGCGTCGTTGAGATCAAGTGGATTCTGCTCACGAGACTGGATTTGCCGGCCCAACTTGGTGA
TACTGGAAATAAAATCGGTGTCATACGTCAGGGTGCCATCCATTTGGGGGTCCATACCGTCCTTC
CCTGGTGGCATAGGAGGCATGGGACCTCCGGACCCCTTGTTTTTGAGCTTCTTCGTGAGCTTTGC
GGCATCAAACTGAAGAGCACCTGGCAGCTGAGACTGGCCGTGAGCCTGGGGTTGGGGGGTGAACG
GAGGTTGTGTGGGAGGGTTCAAAGGGAGTTGCGGTGTCTCCTTTAGCGGGGTAGTTGCCTTGGAT
ATAGTCTTCCCTAGCTGGCGCTGGGTGCTTGGTTTGTTGCCCATTGTGGTCAAGCTTATGATTTT
CGGAGGCTTTATGCAGCGCGAATGGTAAGCAATGTGTACCCAGAGAGAACCCAAACAGGGGTTCG
AATAATACAAAACAGGTTCATTATATGCAAATCTATCTACTCGGA
Right flanking sequence: Indices 60691 -- 61190
CTTATCGCTCTTGGACTCCTTATCACTCTTGTCTGTCTTTGACTTCTTCTTTTTCAGCTCCCCGC
CATCTGCCGAACGCTTTTTCAGAACCACAGGCGCAGCCTCGGAGTAGTCAGCAGCCCCATAACCC
GTGGGGAAGTGGCGCATCCGGAGGTCGTCCACCTGCTCAACGTCAACCCTTTGAACACGAGCAGC
GTCAAAGTCAATTTCGGGAATGACAGCCCGCTCACGAATATTGTAGAACCGCGAAATGGGCGCTT
TGCATCGCTTGGTCAGGCCTGACTTGTCACCAGCGAGGATAGTGTATTTGTCGGTGTCCACGTCT
GCGGTCAAAAACTCCTCGTTGACAGTGAAGTTGGCGCCACCCGAGGTGAACGACTTGGGGTTGTG
TGAGAGCAGCTTAGCAGCAAACAGAACGGGAAGGGCTTTGAGCTTGTCCATCTTAAACCCTTTAG
GAGCCTTGATCAACCAAACTTCCTTGTCACCAATCTTGGAGGCAA
Found at i:60691 original size:9 final size:9
Alignment explanation
Indices: 60641--60693 Score: 67
Period size: 9 Copynumber: 6.2 Consensus size: 9
60631 CTCGGACTTT
60641 TTCTCCTTC
1 TTCTCCTTC
60650 TTCT--TT-
1 TTCTCCTTC
*
60656 TTCTCCTTT
1 TTCTCCTTC
60665 TTCTCCTTC
1 TTCTCCTTC
*
60674 TTTTCCTTC
1 TTCTCCTTC
60683 TTCTCCTTC
1 TTCTCCTTC
60692 TT
1 TT
60694 ATCGCTCTTG
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
6 4 0.11
7 2 0.05
8 2 0.05
9 30 0.79
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (9 bp):
TTCTCCTTC
Left flanking sequence: Indices 60141 -- 60640
GCGTCGTTGAGATCAAGTGGATTCTGCTCACGAGACTGGATTTGCCGGCCCAACTTGGTGATACT
GGAAATAAAATCGGTGTCATACGTCAGGGTGCCATCCATTTGGGGGTCCATACCGTCCTTCCCTG
GTGGCATAGGAGGCATGGGACCTCCGGACCCCTTGTTTTTGAGCTTCTTCGTGAGCTTTGCGGCA
TCAAACTGAAGAGCACCTGGCAGCTGAGACTGGCCGTGAGCCTGGGGTTGGGGGGTGAACGGAGG
TTGTGTGGGAGGGTTCAAAGGGAGTTGCGGTGTCTCCTTTAGCGGGGTAGTTGCCTTGGATATAG
TCTTCCCTAGCTGGCGCTGGGTGCTTGGTTTGTTGCCCATTGTGGTCAAGCTTATGATTTTCGGA
GGCTTTATGCAGCGCGAATGGTAAGCAATGTGTACCCAGAGAGAACCCAAACAGGGGTTCGAATA
ATACAAAACAGGTTCATTATATGCAAATCTATCTACTCGGACTTT
Right flanking sequence: Indices 60694 -- 61193
ATCGCTCTTGGACTCCTTATCACTCTTGTCTGTCTTTGACTTCTTCTTTTTCAGCTCCCCGCCAT
CTGCCGAACGCTTTTTCAGAACCACAGGCGCAGCCTCGGAGTAGTCAGCAGCCCCATAACCCGTG
GGGAAGTGGCGCATCCGGAGGTCGTCCACCTGCTCAACGTCAACCCTTTGAACACGAGCAGCGTC
AAAGTCAATTTCGGGAATGACAGCCCGCTCACGAATATTGTAGAACCGCGAAATGGGCGCTTTGC
ATCGCTTGGTCAGGCCTGACTTGTCACCAGCGAGGATAGTGTATTTGTCGGTGTCCACGTCTGCG
GTCAAAAACTCCTCGTTGACAGTGAAGTTGGCGCCACCCGAGGTGAACGACTTGGGGTTGTGTGA
GAGCAGCTTAGCAGCAAACAGAACGGGAAGGGCTTTGAGCTTGTCCATCTTAAACCCTTTAGGAG
CCTTGATCAACCAAACTTCCTTGTCACCAATCTTGGAGGCAAGGC
Found at i:91912 original size:12 final size:12
Alignment explanation
Indices: 91874--91916 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
91864 ATCTGTTGCT
*
91874 GGTGCTGTTGAG
1 GGTGTTGTTGAG
*
91886 GATGTTGTTGAG
1 GGTGTTGTTGAG
*
91898 GGTGTTGTTGGG
1 GGTGTTGTTGAG
91910 GGTGTTG
1 GGTGTTG
91917 CTGCGGCGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.07, C:0.02, G:0.51, T:0.40
Consensus pattern (12 bp):
GGTGTTGTTGAG
Left flanking sequence: Indices 91374 -- 91873
CCGAAGAAAATTGCAATCTGAGGATAGCTATACTTTCGTATATTTCAGGAGGATCGAACGATCCG
AGGTTCTCTAAAACAATTCTTGAATGCTTACAGCCGCCTTCAATTGGCGTGGTTGGTATTCATGT
CAGGGGAAATATTGGGGCAGTGCAAGGGTAGTTACCTTTTGGGCTGGCTCAAACCTCTGACCGCC
GCACGTTTGGAGAGTCCTTACTAAAATTCGGATTCCTTATAGTTTGACGTCTACACAGCTTGCCA
ATATTAATACAATTAAATTACACCGATGAACTAAAATCTAAAGACCATCACCCTCGAGGTCCAAC
GCGAAATCGAGTCCCATATCGTACTCGTTGCCATCCAATTTCAAGTCGTCATCGTGCAACAGCAA
CACTGCATCAGGTCCGTCCATGTCCATATTGAGTAATTGGCCCATGTCATCGCCCAGAGGGTGCT
GCATCATTCCCAGCTGGAACATTTCTTGTTGCAGGATCTGTTGCT
Right flanking sequence: Indices 91917 -- 92416
CTGCGGCGGAGGTGGCTGCTGCTGCTGTTGCATATGCTGTTGTTGCTGCTGCTGCCGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGCATCTGCTGCTGCATCATCATCTGGTGG
TGTCGATGCTGCTGTTGCTGTTGTTGCTGCTGCTGTTGCTGCTGTTGAAGGATCGGTGGCTGATG
AGCTGCCTGTTGAGGCATGGCCCGGGGCAAACTTTGAGGCATTCCCTGCTGCATTCCGTGCTGTA
AACTTTGGGGATTCGGAGCCTGGGTTGGAACTGGCGCAGGAACCAGCGGATTAGTTGTCACTTGC
ACTGGCTTAAGCGACCAAGTAGCATCAAACTCTTTGAAATCCAAAATCTTTTCAACCTCAGACAG
AGGGATGTGACCCACCGAGATCTCCCGGAGCTTGTCCAGCGCCAACTCCTCGAGCTCTATGGCGT
CATCATAAACGAACAGTCCCTCCTCATTGTAGATTCGCGCATTGC
Found at i:91937 original size:3 final size:3
Alignment explanation
Indices: 91931--92031 Score: 116
Period size: 3 Copynumber: 33.7 Consensus size: 3
91921 GGCGGAGGTG
* * * * *
91931 GCT GCT GCT GCT GTT GCAT -AT GCT GTT GTT GCT GCT GCT GCC GCT
1 GCT GCT GCT GCT GCT GC-T GCT GCT GCT GCT GCT GCT GCT GCT GCT
*
91976 GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GTT GCAT
1 GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GCT GC-T
92022 -CT GCT GCT GC
1 GCT GCT GCT GC
92032 ATCATCATCT
Statistics
Matches: 84, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
2 2 0.02
3 80 0.95
4 2 0.02
ACGTcount: A:0.03, C:0.30, G:0.32, T:0.36
Consensus pattern (3 bp):
GCT
Left flanking sequence: Indices 91431 -- 91930
ACGATCCGAGGTTCTCTAAAACAATTCTTGAATGCTTACAGCCGCCTTCAATTGGCGTGGTTGGT
ATTCATGTCAGGGGAAATATTGGGGCAGTGCAAGGGTAGTTACCTTTTGGGCTGGCTCAAACCTC
TGACCGCCGCACGTTTGGAGAGTCCTTACTAAAATTCGGATTCCTTATAGTTTGACGTCTACACA
GCTTGCCAATATTAATACAATTAAATTACACCGATGAACTAAAATCTAAAGACCATCACCCTCGA
GGTCCAACGCGAAATCGAGTCCCATATCGTACTCGTTGCCATCCAATTTCAAGTCGTCATCGTGC
AACAGCAACACTGCATCAGGTCCGTCCATGTCCATATTGAGTAATTGGCCCATGTCATCGCCCAG
AGGGTGCTGCATCATTCCCAGCTGGAACATTTCTTGTTGCAGGATCTGTTGCTGGTGCTGTTGAG
GATGTTGTTGAGGGTGTTGTTGGGGGTGTTGCTGCGGCGGAGGTG
Right flanking sequence: Indices 92032 -- 92531
ATCATCATCTGGTGGTGTCGATGCTGCTGTTGCTGTTGTTGCTGCTGCTGTTGCTGCTGTTGAAG
GATCGGTGGCTGATGAGCTGCCTGTTGAGGCATGGCCCGGGGCAAACTTTGAGGCATTCCCTGCT
GCATTCCGTGCTGTAAACTTTGGGGATTCGGAGCCTGGGTTGGAACTGGCGCAGGAACCAGCGGA
TTAGTTGTCACTTGCACTGGCTTAAGCGACCAAGTAGCATCAAACTCTTTGAAATCCAAAATCTT
TTCAACCTCAGACAGAGGGATGTGACCCACCGAGATCTCCCGGAGCTTGTCCAGCGCCAACTCCT
CGAGCTCTATGGCGTCATCATAAACGAACAGTCCCTCCTCATTGTAGATTCGCGCATTGCAAAAC
ATCAAGTGGAGGTCCTCCATGAACTCGCGGATAGACACGTATGTACGCAGGTTGATTCGCTTGCG
CACTGTATCTAACGCAATGGGGTACTTGATAAGCACATAGTAGTC
Found at i:107735 original size:18 final size:18
Alignment explanation
Indices: 107714--107988 Score: 206
Period size: 18 Copynumber: 15.3 Consensus size: 18
107704 ACCTCTGCGG
* *
107714 AGCCCTCCACTACTCAGG
1 AGCCCTCCACTACTGAGC
*
107732 AGCCTTCCACCT-CTGAGC
1 AGCCCTCCA-CTACTGAGC
* * *
107750 AGCCCTCCACCACTCAGG
1 AGCCCTCCACTACTGAGC
*
107768 AGCCCTCTACCT-CTGAGC
1 AGCCCTCCA-CTACTGAGC
* * *
107786 AGCCCTCCACCACTCAGG
1 AGCCCTCCACTACTGAGC
107804 AGCCCTCCACCT-CTGAGC
1 AGCCCTCCA-CTACTGAGC
* * *
107822 AGCCCTCCACCACTCAGG
1 AGCCCTCCACTACTGAGC
*
107840 AGCCCTCTACCT-CTGAGC
1 AGCCCTCCA-CTACTGAGC
* * *
107858 AGCCCTCCACCACTCAGG
1 AGCCCTCCACTACTGAGC
*
107876 AGCCCTCTACCT-CTGAGC
1 AGCCCTCCA-CTACTGAGC
*
107894 AGCCCTCCACCACTGAGC
1 AGCCCTCCACTACTGAGC
*
107912 AGCCCTCTACCT-CTGAGC
1 AGCCCTCCA-CTACTGAGC
*
107930 AGCCCTCCACCACTGAGC
1 AGCCCTCCACTACTGAGC
* *
107948 AGCCCTCTACCT-CTGAGA
1 AGCCCTCCA-CTACTGAGC
*
107966 AGCCCTCCACCT-CTGAGG
1 AGCCCTCCA-CTACTGAGC
107984 AGCCC
1 AGCCC
107989 ACTTCCCAGT
Statistics
Matches: 200, Mismatches: 44, Indels: 26
0.74 0.16 0.10
Matches are distributed among these distances:
17 6 0.03
18 186 0.93
19 8 0.04
ACGTcount: A:0.20, C:0.47, G:0.17, T:0.16
Consensus pattern (18 bp):
AGCCCTCCACTACTGAGC
Left flanking sequence: Indices 107214 -- 107713
TGCTGGTGATGTAGACATCACTGACGACGTCGCCAACCCTTTCCAATGGACGAAGACCTTCACCG
TTCAGGCTGAGAAGAAGGCGTTGCCTTCCAAGCAGAAGCGTGGTAAGATCGAGGATGCTTTCAAC
GAGAATTTCGTGTGCTGTCTTCCCGGTACCTTCGAGATTTTGATTGCCCCCGCCTTCCCCAAGGG
TAAGTCTGCCGCCACCTCTACCATGGCTTCCACTTTCAAATACGGTGTGGAGCCTGTCAACACTT
CCCTGTTGGAGGAAGTTGACCCCTCTTCCACCAAGGCTAGCCTCGACAAGGCTTTGGGTGTTTCC
TTGAGAAAGCGCGGCCCCTTCAACTTCCGTAAGAGAAACGACAAATTGGAGGAGCAATGGTTGAA
GACTACTCAAATGATGTTGCAATACTGTTGGAGCTGTGGTTGTGAGGACCAGTCGTCTAGCTCTA
GCTCTAGCTCTTCCACCACTTCTCTGCAAAGCTCTACCTCTGCGG
Right flanking sequence: Indices 107989 -- 108488
ACTTCCCAGTGTGTTGTGACCGTCACCGAGACCTCGACTGCTCCGCCTGTCACTGTCACTATCAC
TGGTGCCACTAGATTGTTGTAAACAACTGGTACTCTCCCCTACACGACCTCAGTCGTACTCCAAT
TTTCAGTTCACTCAAATTATTTTTAGTTTACCATACCCTTTTATAATTCCGGTTTATTTTTTTTC
GAATATATATAACAGCCATTACCTAGATTTTGTTGAAACAAACCGTGGATTGTGACAGTTTTGGC
CAGTTGTATGGACGGAAACGAACGTGGCAAATTTTTCATCAAAGCAGTTACACACAATCGACTAC
TACATAAATATTTTTGGAGGACGCAATCGAATTGACCTTCAATTCTTCAGGTAACGTGATTCTCT
ATTTTTCAAAATTTTGATAAACACATCCTGAAAAGACTAAACTAAATCAGGAAATCATACAATAA
GGGTGCAAAGCCAGTCTGCCAAAGTAGTCAATGCACTGAATCAAA
Found at i:107744 original size:36 final size:36
Alignment explanation
Indices: 107700--107988 Score: 461
Period size: 36 Copynumber: 8.0 Consensus size: 36
107690 CTCTGCAAAG
* * *
107700 CTCTACCTCTGCGGAGCCCTCCACTACTCAGGAGCC
1 CTCTACCTCTGAGCAGCCCTCCACCACTCAGGAGCC
* *
107736 TTCCACCTCTGAGCAGCCCTCCACCACTCAGGAGCC
1 CTCTACCTCTGAGCAGCCCTCCACCACTCAGGAGCC
107772 CTCTACCTCTGAGCAGCCCTCCACCACTCAGGAGCC
1 CTCTACCTCTGAGCAGCCCTCCACCACTCAGGAGCC
*
107808 CTCCACCTCTGAGCAGCCCTCCACCACTCAGGAGCC
1 CTCTACCTCTGAGCAGCCCTCCACCACTCAGGAGCC
107844 CTCTACCTCTGAGCAGCCCTCCACCACTCAGGAGCC
1 CTCTACCTCTGAGCAGCCCTCCACCACTCAGGAGCC
* *
107880 CTCTACCTCTGAGCAGCCCTCCACCACTGAGCAGCC
1 CTCTACCTCTGAGCAGCCCTCCACCACTCAGGAGCC
* *
107916 CTCTACCTCTGAGCAGCCCTCCACCACTGAGCAGCC
1 CTCTACCTCTGAGCAGCCCTCCACCACTCAGGAGCC
* * *
107952 CTCTACCTCTGAGAAGCCCTCCACCTCTGAGGAGCC
1 CTCTACCTCTGAGCAGCCCTCCACCACTCAGGAGCC
107988 C
1 C
107989 ACTTCCCAGT
Statistics
Matches: 239, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 239 1.00
ACGTcount: A:0.19, C:0.47, G:0.17, T:0.17
Consensus pattern (36 bp):
CTCTACCTCTGAGCAGCCCTCCACCACTCAGGAGCC
Left flanking sequence: Indices 107200 -- 107699
GTCGCTGGTTTGGGTGCTGGTGATGTAGACATCACTGACGACGTCGCCAACCCTTTCCAATGGAC
GAAGACCTTCACCGTTCAGGCTGAGAAGAAGGCGTTGCCTTCCAAGCAGAAGCGTGGTAAGATCG
AGGATGCTTTCAACGAGAATTTCGTGTGCTGTCTTCCCGGTACCTTCGAGATTTTGATTGCCCCC
GCCTTCCCCAAGGGTAAGTCTGCCGCCACCTCTACCATGGCTTCCACTTTCAAATACGGTGTGGA
GCCTGTCAACACTTCCCTGTTGGAGGAAGTTGACCCCTCTTCCACCAAGGCTAGCCTCGACAAGG
CTTTGGGTGTTTCCTTGAGAAAGCGCGGCCCCTTCAACTTCCGTAAGAGAAACGACAAATTGGAG
GAGCAATGGTTGAAGACTACTCAAATGATGTTGCAATACTGTTGGAGCTGTGGTTGTGAGGACCA
GTCGTCTAGCTCTAGCTCTAGCTCTTCCACCACTTCTCTGCAAAG
Right flanking sequence: Indices 107989 -- 108488
ACTTCCCAGTGTGTTGTGACCGTCACCGAGACCTCGACTGCTCCGCCTGTCACTGTCACTATCAC
TGGTGCCACTAGATTGTTGTAAACAACTGGTACTCTCCCCTACACGACCTCAGTCGTACTCCAAT
TTTCAGTTCACTCAAATTATTTTTAGTTTACCATACCCTTTTATAATTCCGGTTTATTTTTTTTC
GAATATATATAACAGCCATTACCTAGATTTTGTTGAAACAAACCGTGGATTGTGACAGTTTTGGC
CAGTTGTATGGACGGAAACGAACGTGGCAAATTTTTCATCAAAGCAGTTACACACAATCGACTAC
TACATAAATATTTTTGGAGGACGCAATCGAATTGACCTTCAATTCTTCAGGTAACGTGATTCTCT
ATTTTTCAAAATTTTGATAAACACATCCTGAAAAGACTAAACTAAATCAGGAAATCATACAATAA
GGGTGCAAAGCCAGTCTGCCAAAGTAGTCAATGCACTGAATCAAA
Found at i:116277 original size:32 final size:32
Alignment explanation
Indices: 116236--116302 Score: 107
Period size: 32 Copynumber: 2.1 Consensus size: 32
116226 GATCTCGTGC
* * *
116236 AAATAGCCTCAGAGACTAAGAGACCACAGTTG
1 AAATAGCCTCAGAAACCAAGAGACCACAGCTG
116268 AAATAGCCTCAGAAACCAAGAGACCACAGCTG
1 AAATAGCCTCAGAAACCAAGAGACCACAGCTG
116300 AAA
1 AAA
116303 AGAATCACAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.45, C:0.24, G:0.19, T:0.12
Consensus pattern (32 bp):
AAATAGCCTCAGAAACCAAGAGACCACAGCTG
Left flanking sequence: Indices 115736 -- 116235
ATTGCTTGAGGTTGAAAGAATACCGCATTAGCCCCACAGATGTTAAATTTGGATCCACCAAAGTT
GTTTAGACAGTCATCGTTGGAACGGACATCCACTCTTTGCGAGAACAAGCTGTGTACTTAGGTGA
AATGTTGTACTTTTGTTCGGTTCTAAGAGGGTAACCTTATCGTGATCAACGAGCCCATATTTCTC
CATTGGATGCCGAGATATATGCTAACGCGACTAGTAGTATGAAGAATTTGAATCAAGAGGCTTAT
ATTGCAGGCAGGGCGAACCGGATGGTAATATGCTAACAAGGCAATACTTACGAGGTGTTAAATCA
TACGCCATTCATGAACGGGACCAACCTTTCTGGTCGAAAACATAATTTTATTGGCTCAGTTACAG
GAGAGATTCTCTAATGTTTGTTTGACTGTGAAATCTCGTGACTATTAGTGAATTGGAAATCTATG
TAAATTAAATTTTGCAATTTGGTTTTCTGTTGATTGATCTCGTGC
Right flanking sequence: Indices 116303 -- 116802
AGAATCACACCAATGATAATCGAATGGCACTGAAGTGGTATCAAACAAACTGTTGAGACCCGACC
TCGGAGTCAGAAGCCAAGGGACCGAAGGTACCGTTGGAGAGTTTCTTGTCGTTTTTAGCCATGGT
GGATTTCTTACTCAATTCGAAGGGTACGAAATGCGGTATGGAATTAGATAGGGATCCCAATAGTC
GGGAAACTCCATTCTATATAGTGGAACAATATTCAGGGATGTAAGTTGCGTTGTCGGGTTTACAT
TCCTGTAACTACCTCATAACTCGATGGCTACCGTATTGGTTGTGTGCGCAACCAGGTATATGGGA
GCCAACACAAACTTCTTACTCAATTAGATGGATGGGGTTCTCGCTTATGGACACTCCGTTGCTCT
CTCGTTTTAAGTTAACGTTCCCCATAATCAAGATTGTATAGGCGGATGAAGACAAATTATAGTTC
TCAACATTAGGTGGTCAATCCAAATTTGAATGATTTCAACTGTTT
Found at i:117184 original size:1 final size:1
Alignment explanation
Indices: 117178--117241 Score: 128
Period size: 1 Copynumber: 64.0 Consensus size: 1
117168 TAAAGCTCCT
117178 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
117242 NACTCAGGAA
Statistics
Matches: 63, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 63 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Left flanking sequence: Indices 116678 -- 117177
ACACTCCGTTGCTCTCTCGTTTTAAGTTAACGTTCCCCATAATCAAGATTGTATAGGCGGATGAA
GACAAATTATAGTTCTCAACATTAGGTGGTCAATCCAAATTTGAATGATTTCAACTGTTTCCTGT
CTCAATGTACTTCGTGCTTATCAAAGCCCGACTTCTGGTTATCTCAAAAATCAAGTGATGTCACC
GTGATCTCTTTTGCAAACAAGTTTACAAAAATATGAAGGATCATCTCACCGTATAATTGTTGGGT
TTCTACTGAATAAGAACCCAACGACATAGCTTTGTCATGGCTAATCTTCGAATTGCTGACAGTGG
CTTCGATCGCATTCAGAGTATACTTGATGGTGGCTTGATCATATCAAATCCAGCATAGCCATGGG
CAGGGAGGTTTCCTAGATCTTTTTTCGAATTGCAATAGCATCGGGTTTTTGCCTGTCCACGGCTC
GAAAGATCTACAGATAGAAGCCTGGCTAAGTGCAATAAAGCTCCT
Right flanking sequence: Indices 117242 -- 117741
NACTCAGGAAGTTCAAAGCCAAGGAGTTCAGGGTCGACTTTAGGCGACATTAATACCATGGAGGA
CAGAATAAGAACTATAATCGAACGCTGTTGAGCTTTGTTTGCAATCCAATGGGTATTTCACAAAA
CGTGGTTTCCATATCAAGAAGTAAGACCGGTTTGTATGGTAAAGATAAGTGGGCCGATAGGAACG
CGTGAAATAGTCAAATAGTCTACCTGATAGTGGACACATTTGGCCTCCTTCTGGTTTTCCCTTGG
TTAGAGTTGTAGACCTATACGACTCAATTATGAGGAAGGGGGAGTTAGAATGGGAAAAACAACAG
AATGCCTATTCGGGCACATTTTCCACCTAATTGAAAGGAGCTGTCTGAAACCACCTCAGTTCCAT
TCGATATACTTTTGGTTGACTCTCTTCGGCTGTGGTCTCTTTGCGGTTAGTGGTCACGTGATTAT
GATGTAGTCTACGGTGGTGATCAATCCACATGATCTAAATCATGT
Done.