Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold33
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 188308
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
File 1 of 2
Found at i:1403 original size:154 final size:153
Alignment explanation
Indices: 1103--1538 Score: 493
Period size: 154 Copynumber: 2.8 Consensus size: 153
1093 GAAAGTAAGG
* * * * * * *
1103 CACCTTCCCCGCT-TTGAAGATAGCAAGTAAAAGGTGTTTAGGGAACTCGAGCTTAAGGCGGGGC
1 CACCTACCCCGCTATTGAAGATAGAAAGTACAAGGTGTTTAGGGAATTGGAGCCTCAGGCGGGGC
* * * * * * *
1167 TCTAACC-CAATAGCTTGGGAGAAAGAATAACAACCCGAGGCAAGAATAGTTTGCGAGGAAGGTC
66 CCT-ACCACAGTAGATT-GGAGAAAGAGTAACAAGCCGGGGCAAGAATAGTTTGCGAGGAAAGTC
* *
1231 GAGTAGTGCGTCGAGGAAAGTGGAA
129 GAGTAGCGCGTCGAGGAAAGTAGAA
* * *
1256 CTCCTACCCCGCTATTGTAGATAGTAAGTACAAGGTGTTTAGGGAATTGGAGCCTCAGGCGGGGC
1 CACCTACCCCGCTATTGAAGATAGAAAGTACAAGGTGTTTAGGGAATTGGAGCCTCAGGCGGGGC
* * *
1321 CCTACCACAGCAGTTTAGGAGAAAGAGTAACAAGCCGGGGCAAGAATAGTTTGCGAGGAAAGTTG
66 CCTACCACAGTAGATT-GGAGAAAGAGTAACAAGCCGGGGCAAGAATAGTTTGCGAGGAAAGTCG
1386 AGTAGCGCGTC-AGGGAAAGTAGAA
130 AGTAGCGCGTCGA-GGAAAGTAGAA
* * * * *
1410 CACCTTCCCCGCCAGTGAAGAAAGAAAGTACAGGGTGTTTAGGGAATTGGAGCCTCAGGCGGGGC
1 CACCTACCCCGCTATTGAAGATAGAAAGTACAAGGTGTTTAGGGAATTGGAGCCTCAGGCGGGGC
* * * * *
1475 CCAACCACAGTAGCATTGTAGAAAGTGTAACAAGCTGGGGCAA-AGACAGTTTGCGAAGGAAAGT
66 CCTACCACAGTAG-ATTGGAGAAAGAGTAACAAGCCGGGGCAAGA-ATAGTTTGCG-AGGAAAGT
1539 GGAATGGTGC
Statistics
Matches: 241, Mismatches: 36, Indels: 10
0.84 0.13 0.03
Matches are distributed among these distances:
153 16 0.07
154 215 0.89
155 10 0.04
ACGTcount: A:0.31, C:0.19, G:0.31, T:0.19
Consensus pattern (153 bp):
CACCTACCCCGCTATTGAAGATAGAAAGTACAAGGTGTTTAGGGAATTGGAGCCTCAGGCGGGGC
CCTACCACAGTAGATTGGAGAAAGAGTAACAAGCCGGGGCAAGAATAGTTTGCGAGGAAAGTCGA
GTAGCGCGTCGAGGAAAGTAGAA
Left flanking sequence: Indices 603 -- 1102
TGCAGACTTGGGCAGAGTCCCAACTAGTGGTAGAAACTTTAGTTACTCCTGTTGTGGTAAGAGCA
GCGTAGTCTTACCCCACTCAAGCGTAGTAGGCATGTGGAGACGTGGTTGCGTATGCGGGTGAAAA
CCCAAGATGTCGATAGGTCAAATCTATCAAATCTATCAGGGGTATGTAGATCCACAATCTAGATC
GGATCATGCTCGATGTTTCGGGGCTTCAATTGAAGACGATTCCATGGATTGGCGAGAAATCGCAG
TTGAGCTTGGAGAGTAGTGGGAAACTCTTACACATGCACCGTCTACTCCACGTCGATAATTGGGG
AATTTTAGTAGTACTTGCGTCTGTTTGTTAAAGGGAACTGGAGAGCTGCATACCCAGGATTCTAA
TGGTAAGTCTAATTTATTCAGGAAGGTAGGGTGGCTGCATTGTCAAATTAAGAAAATCCCAGGGA
AATTTTAGTTGTAAATGCATTTTCATTGTCCTTAGGAAAGTAAGG
Right flanking sequence: Indices 1539 -- 2038
GGAATGGTGCGTCAAAAATGGTCCGCATCATGCAGTGAGACGTCCCAGAGCTCCAACAACGGCCC
ATTGGCCGATCCAAAACGTCCTGGTGGCGATCCACCCGTATCTAATGCCCCAAAACTTCCCAGGC
TCCGATCGGGAATCTTCTCGCTTAGTTAGCGACATTTTGCAGCCATTCCAAACACGAAAGTGGGG
AAGGCTTGAAACCCGCCTTTCTCTGCGAGCCCTACGGGCCCTACGGTTGGCGAGCCAGCTACGGT
CATCCCATATTTGCACCTAGAAGGGTCACCCACGGTCGGGTGGATGTAGGACCCACAGAGGGCCA
CGTACGGTATCCATGGAGGACCGCGTACGGTATCCACGGAGGGCCACCTACGGCCACCTGGGGTA
TAGCTTTGCAGAGAAAGTACGAATACTGAGGTACGAACTCTGTTGGAACTACGCTCACCGAGGTG
CAACACCTTGTAAAACACCGTCACCGGGGTGGTATTGCAGAGCAT
Found at i:1915 original size:23 final size:23
Alignment explanation
Indices: 1851--1916 Score: 87
Period size: 23 Copynumber: 2.9 Consensus size: 23
1841 GATGTAGGAC
*
1851 CCACAGAGGGCCACGTACGGTAT
1 CCACGGAGGGCCACGTACGGTAT
* * *
1874 CCATGGAGGACCGCGTACGGTAT
1 CCACGGAGGGCCACGTACGGTAT
*
1897 CCACGGAGGGCCACCTACGG
1 CCACGGAGGGCCACGTACGG
1917 CCACCTGGGG
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.23, C:0.32, G:0.33, T:0.12
Consensus pattern (23 bp):
CCACGGAGGGCCACGTACGGTAT
Left flanking sequence: Indices 1351 -- 1850
CAAGCCGGGGCAAGAATAGTTTGCGAGGAAAGTTGAGTAGCGCGTCAGGGAAAGTAGAACACCTT
CCCCGCCAGTGAAGAAAGAAAGTACAGGGTGTTTAGGGAATTGGAGCCTCAGGCGGGGCCCAACC
ACAGTAGCATTGTAGAAAGTGTAACAAGCTGGGGCAAAGACAGTTTGCGAAGGAAAGTGGAATGG
TGCGTCAAAAATGGTCCGCATCATGCAGTGAGACGTCCCAGAGCTCCAACAACGGCCCATTGGCC
GATCCAAAACGTCCTGGTGGCGATCCACCCGTATCTAATGCCCCAAAACTTCCCAGGCTCCGATC
GGGAATCTTCTCGCTTAGTTAGCGACATTTTGCAGCCATTCCAAACACGAAAGTGGGGAAGGCTT
GAAACCCGCCTTTCTCTGCGAGCCCTACGGGCCCTACGGTTGGCGAGCCAGCTACGGTCATCCCA
TATTTGCACCTAGAAGGGTCACCCACGGTCGGGTGGATGTAGGAC
Right flanking sequence: Indices 1917 -- 2416
CCACCTGGGGTATAGCTTTGCAGAGAAAGTACGAATACTGAGGTACGAACTCTGTTGGAACTACG
CTCACCGAGGTGCAACACCTTGTAAAACACCGTCACCGGGGTGGTATTGCAGAGCATCGTCACCA
GGGTGAGAAGCCAAGAGAAGTCACGTAAAAGAGGGGCCAACGCCCCATCGCTAAAATCATGATGT
TTATGCTATGCTATTTGCTGCCCATGCGTCGGCGTTTGGACTCACTCACCATCTCAATGTCGTCG
TCGCCCAGCGAGCCCACCAGGAGCCCGCGAACACTGCTGTTGATGGCCGACACGGGCTCGTCGTC
GCTGATTTCCAACGGCTCGTCCTTGGGCCGCTGTCGCTTGTCCGGGATCTTACCCGACCGCGTAC
GACCGTTGCTGAGGGGACCGCTAGGGCTAGGCTGCTCGTGGGTGATGGCACAGTCGTCGTCGGAG
TCAACTTCGTCGGCGGAGCGCTTTCGTGAATTGTCAAACAGCCCA
Found at i:2615 original size:18 final size:18
Alignment explanation
Indices: 2592--2640 Score: 62
Period size: 18 Copynumber: 2.7 Consensus size: 18
2582 AGCACCATAT
2592 GGGTTCGAGACTCCAAAC
1 GGGTTCGAGACTCCAAAC
* * *
2610 GGGTTCTAGACTCCAGAT
1 GGGTTCGAGACTCCAAAC
*
2628 GGGTTCGGGACTC
1 GGGTTCGAGACTC
2641 GTCCCGGTGG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.20, C:0.24, G:0.33, T:0.22
Consensus pattern (18 bp):
GGGTTCGAGACTCCAAAC
Left flanking sequence: Indices 2092 -- 2591
CATCGCTAAAATCATGATGTTTATGCTATGCTATTTGCTGCCCATGCGTCGGCGTTTGGACTCAC
TCACCATCTCAATGTCGTCGTCGCCCAGCGAGCCCACCAGGAGCCCGCGAACACTGCTGTTGATG
GCCGACACGGGCTCGTCGTCGCTGATTTCCAACGGCTCGTCCTTGGGCCGCTGTCGCTTGTCCGG
GATCTTACCCGACCGCGTACGACCGTTGCTGAGGGGACCGCTAGGGCTAGGCTGCTCGTGGGTGA
TGGCACAGTCGTCGTCGGAGTCAACTTCGTCGGCGGAGCGCTTTCGTGAATTGTCAAACAGCCCA
GAAAGGGTGATTGGGTGAGCCTCGTCCCCCTGGCGAGGAGACGAGAGACTGGGTGGGGACTTGCG
CGATCCAGAAGGCGATAAGCGGGACTGCAGAGATCGTGCCACCTTTAAAGTGGGAGCCAGTGGCT
GATGAGGTTCCTTTGACTCTTGGGAGGACTGAGACAGCACCATAT
Right flanking sequence: Indices 2641 -- 3140
GTCCCGGTGGCCTGGACTCTTGCGGTTGAGGTGAGAGACCTTGTCGTTGCGGACCCTGAGAACAG
GCTCCTCAAGGACCATGTCCGGCTCGGTCAGGCGGAGAGCCGCGAGGAAGCCGTCGCCAATGGCA
GCCGGCGCCTCTGGCAGCGGCTCTTTGCTGTCAGCTGGGAGGACCGACGACCCCTCTTCGAACTC
CTCGTCGGACTCGATAAGCGCCGCGTGCCTGGCTGGAGGCGACGATGGCGGGGTCGACGGTGGCT
TGGCCTTCCTGTTGTTTTTGGCCTCCTCTCGTCGCTGTCTCAGCTGCGCCTTTAATAAGTCATAC
ACCCCAGGGTTGGTCTTCTCTGTCTTTTCGGGCTTTTCGGACTTTTTGGCTGCTTTTTTAGGTGG
CATTTCAGCTGGTCTTTCAGCTAGTCTTTCAGCTGGCCTTTCTGGCCTTTCTGGCCTTTCTGGCC
TTTCTGGCATTTCAGCTGGCCTTTCAACTGGCCTTTCAGCCAGCT
Found at i:3077 original size:9 final size:9
Alignment explanation
Indices: 3063--3108 Score: 83
Period size: 9 Copynumber: 5.1 Consensus size: 9
3053 AGTCTTTCAG
3063 CTGGCCTTT
1 CTGGCCTTT
3072 CTGGCCTTT
1 CTGGCCTTT
3081 CTGGCCTTT
1 CTGGCCTTT
3090 CTGGCCTTT
1 CTGGCCTTT
*
3099 CTGGCATTT
1 CTGGCCTTT
3108 C
1 C
3109 AGCTGGCCTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 36 1.00
ACGTcount: A:0.02, C:0.33, G:0.22, T:0.43
Consensus pattern (9 bp):
CTGGCCTTT
Left flanking sequence: Indices 2563 -- 3062
CTCTTGGGAGGACTGAGACAGCACCATATGGGTTCGAGACTCCAAACGGGTTCTAGACTCCAGAT
GGGTTCGGGACTCGTCCCGGTGGCCTGGACTCTTGCGGTTGAGGTGAGAGACCTTGTCGTTGCGG
ACCCTGAGAACAGGCTCCTCAAGGACCATGTCCGGCTCGGTCAGGCGGAGAGCCGCGAGGAAGCC
GTCGCCAATGGCAGCCGGCGCCTCTGGCAGCGGCTCTTTGCTGTCAGCTGGGAGGACCGACGACC
CCTCTTCGAACTCCTCGTCGGACTCGATAAGCGCCGCGTGCCTGGCTGGAGGCGACGATGGCGGG
GTCGACGGTGGCTTGGCCTTCCTGTTGTTTTTGGCCTCCTCTCGTCGCTGTCTCAGCTGCGCCTT
TAATAAGTCATACACCCCAGGGTTGGTCTTCTCTGTCTTTTCGGGCTTTTCGGACTTTTTGGCTG
CTTTTTTAGGTGGCATTTCAGCTGGTCTTTCAGCTAGTCTTTCAG
Right flanking sequence: Indices 3109 -- 3608
AGCTGGCCTTTCAACTGGCCTTTCAGCCAGCTTCCCGGACTTTTTCGAGTCCTCAACCGGTGCAA
CCAGTGCTTCGACCTTCTGGTCAGGCTTTTCCACAGACTCCTTCTCAAGCACAACCTTTGGCTTC
TCAAGCCCCTCCTTTGGCTTCTTATCGCCGTCCCCCGCCGTCTTCTCTGGTTCCTGCTCTTCCAC
CTCCATGACGTCATCGTCCTCCTCGTCTTCCTCGCGAGCCTCCCCCTTGGGCACCGCTCCGTGGA
GCCTCTGCAACACCCCAATCAACTGGCGCCGAGAGCCCACCCTCAGTGCTGCGGGAAACACCCGC
TTCATATCCTGGCGCTTCGGATGGCGCCAGTAGCGCTCCACGCCCGCGGGATCACGCGCCCACGC
TCTCACGTTCAAGATTACGTGGATGCCGCAGTCGTTGAAGTTGTTTTGCTTGGGAACCAGCACGT
TCTTCACCAAAATCATCGCCTTTTCCACCTCCACCTGGTGTCGCT
Found at i:3120 original size:12 final size:12
Alignment explanation
Indices: 3028--3135 Score: 78
Period size: 12 Copynumber: 10.0 Consensus size: 12
3018 CTTTTTTAGG
*
3028 TGGCATTTCAGC
1 TGGCCTTTCAGC
*
3040 TGGTCTTTCAGC
1 TGGCCTTTCAGC
* *
3052 TAGTCTTTCAGC
1 TGGCCTTTCAGC
3064 TGGCCTTT---C
1 TGGCCTTTCAGC
3073 TGGCCTTT---C
1 TGGCCTTTCAGC
3082 TGGCCTTT---C
1 TGGCCTTTCAGC
3091 TGGCCTTT---C
1 TGGCCTTTCAGC
*
3100 TGGCATTTCAGC
1 TGGCCTTTCAGC
*
3112 TGGCCTTTCAAC
1 TGGCCTTTCAGC
3124 TGGCCTTTCAGC
1 TGGCCTTTCAGC
3136 CAGCTTCCCG
Statistics
Matches: 84, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
9 35 0.42
12 49 0.58
ACGTcount: A:0.09, C:0.30, G:0.22, T:0.39
Consensus pattern (12 bp):
TGGCCTTTCAGC
Left flanking sequence: Indices 2528 -- 3027
AAAGTGGGAGCCAGTGGCTGATGAGGTTCCTTTGACTCTTGGGAGGACTGAGACAGCACCATATG
GGTTCGAGACTCCAAACGGGTTCTAGACTCCAGATGGGTTCGGGACTCGTCCCGGTGGCCTGGAC
TCTTGCGGTTGAGGTGAGAGACCTTGTCGTTGCGGACCCTGAGAACAGGCTCCTCAAGGACCATG
TCCGGCTCGGTCAGGCGGAGAGCCGCGAGGAAGCCGTCGCCAATGGCAGCCGGCGCCTCTGGCAG
CGGCTCTTTGCTGTCAGCTGGGAGGACCGACGACCCCTCTTCGAACTCCTCGTCGGACTCGATAA
GCGCCGCGTGCCTGGCTGGAGGCGACGATGGCGGGGTCGACGGTGGCTTGGCCTTCCTGTTGTTT
TTGGCCTCCTCTCGTCGCTGTCTCAGCTGCGCCTTTAATAAGTCATACACCCCAGGGTTGGTCTT
CTCTGTCTTTTCGGGCTTTTCGGACTTTTTGGCTGCTTTTTTAGG
Right flanking sequence: Indices 3136 -- 3635
CAGCTTCCCGGACTTTTTCGAGTCCTCAACCGGTGCAACCAGTGCTTCGACCTTCTGGTCAGGCT
TTTCCACAGACTCCTTCTCAAGCACAACCTTTGGCTTCTCAAGCCCCTCCTTTGGCTTCTTATCG
CCGTCCCCCGCCGTCTTCTCTGGTTCCTGCTCTTCCACCTCCATGACGTCATCGTCCTCCTCGTC
TTCCTCGCGAGCCTCCCCCTTGGGCACCGCTCCGTGGAGCCTCTGCAACACCCCAATCAACTGGC
GCCGAGAGCCCACCCTCAGTGCTGCGGGAAACACCCGCTTCATATCCTGGCGCTTCGGATGGCGC
CAGTAGCGCTCCACGCCCGCGGGATCACGCGCCCACGCTCTCACGTTCAAGATTACGTGGATGCC
GCAGTCGTTGAAGTTGTTTTGCTTGGGAACCAGCACGTTCTTCACCAAAATCATCGCCTTTTCCA
CCTCCACCTGGTGTCGCTCGGCACAGTAGTCGATGATGAACAGCT
Found at i:3238 original size:21 final size:21
Alignment explanation
Indices: 3214--3260 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
3204 CCACAGACTC
3214 CTTCTCAAGCACAACCTTTGG
1 CTTCTCAAGCACAACCTTTGG
* **
3235 CTTCTCAAGCCCCTCCTTTGG
1 CTTCTCAAGCACAACCTTTGG
3256 CTTCT
1 CTTCT
3261 TATCGCCGTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.15, C:0.38, G:0.13, T:0.34
Consensus pattern (21 bp):
CTTCTCAAGCACAACCTTTGG
Left flanking sequence: Indices 2714 -- 3213
AGGACCATGTCCGGCTCGGTCAGGCGGAGAGCCGCGAGGAAGCCGTCGCCAATGGCAGCCGGCGC
CTCTGGCAGCGGCTCTTTGCTGTCAGCTGGGAGGACCGACGACCCCTCTTCGAACTCCTCGTCGG
ACTCGATAAGCGCCGCGTGCCTGGCTGGAGGCGACGATGGCGGGGTCGACGGTGGCTTGGCCTTC
CTGTTGTTTTTGGCCTCCTCTCGTCGCTGTCTCAGCTGCGCCTTTAATAAGTCATACACCCCAGG
GTTGGTCTTCTCTGTCTTTTCGGGCTTTTCGGACTTTTTGGCTGCTTTTTTAGGTGGCATTTCAG
CTGGTCTTTCAGCTAGTCTTTCAGCTGGCCTTTCTGGCCTTTCTGGCCTTTCTGGCCTTTCTGGC
ATTTCAGCTGGCCTTTCAACTGGCCTTTCAGCCAGCTTCCCGGACTTTTTCGAGTCCTCAACCGG
TGCAACCAGTGCTTCGACCTTCTGGTCAGGCTTTTCCACAGACTC
Right flanking sequence: Indices 3261 -- 3760
TATCGCCGTCCCCCGCCGTCTTCTCTGGTTCCTGCTCTTCCACCTCCATGACGTCATCGTCCTCC
TCGTCTTCCTCGCGAGCCTCCCCCTTGGGCACCGCTCCGTGGAGCCTCTGCAACACCCCAATCAA
CTGGCGCCGAGAGCCCACCCTCAGTGCTGCGGGAAACACCCGCTTCATATCCTGGCGCTTCGGAT
GGCGCCAGTAGCGCTCCACGCCCGCGGGATCACGCGCCCACGCTCTCACGTTCAAGATTACGTGG
ATGCCGCAGTCGTTGAAGTTGTTTTGCTTGGGAACCAGCACGTTCTTCACCAAAATCATCGCCTT
TTCCACCTCCACCTGGTGTCGCTCGGCACAGTAGTCGATGATGAACAGCTTGAGCGGGTTCAGTA
TGTTTTTGTGCTGCTGGGAAAGCGAGTCAAACACGAAGATCTCGGCCTTCTCGACGTTGAGCGGG
GTCTCCGTCTCGGTGTCAAACGACGAGCCAGCGTCTTTCGCCAGC
Found at i:4014 original size:12 final size:12
Alignment explanation
Indices: 3989--4022 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
3979 GAGGTTGAGC
* *
3989 GACGGGGTGTGT
1 GACGGCGTGGGT
4001 GACGGCGTGGGT
1 GACGGCGTGGGT
4013 GACGGCGTGG
1 GACGGCGTGG
4023 AGTGGCTGGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.09, C:0.15, G:0.59, T:0.18
Consensus pattern (12 bp):
GACGGCGTGGGT
Left flanking sequence: Indices 3489 -- 3988
GCGCCCACGCTCTCACGTTCAAGATTACGTGGATGCCGCAGTCGTTGAAGTTGTTTTGCTTGGGA
ACCAGCACGTTCTTCACCAAAATCATCGCCTTTTCCACCTCCACCTGGTGTCGCTCGGCACAGTA
GTCGATGATGAACAGCTTGAGCGGGTTCAGTATGTTTTTGTGCTGCTGGGAAAGCGAGTCAAACA
CGAAGATCTCGGCCTTCTCGACGTTGAGCGGGGTCTCCGTCTCGGTGTCAAACGACGAGCCAGCG
TCTTTCGCCAGCTGCTGGCGTTTCGCCCGAGCCAAGAGCCCGGGAAGCCCCCGGATCACACACCC
GTACCAGTGCGAGTTCTCGTTGATGGGGATCACCACGCTTTCGTAGGACATCACGTCGTCCATTT
TCGCGAGCCAGCGGCGGACGTTGGCGTAGTGGTCTGCGGACGACGTGAGCTTGCGGAAGAAGAAC
GAGTTGAACGCGTAGGTTTTGCCTGCGGACGCTGCGAGGTTGAGC
Right flanking sequence: Indices 4023 -- 4522
AGTGGCTGGCCTGGGAAAGAGAGTGCTCAGACGGTAGAAAGGAGACGGAAGAAGGGTTGGGGTCA
GACGTAGTGTCTGCTGCGTCCGCGGTGTCGCTGGTTTCGCCCGAGCCAAGGTTGATTGTGTCTCG
CGTGGTGTCTACGGAGCTCTCACGGGAGCCACTGGCTTCCAGCTCCAAAAGTGCTTTCTTACTTT
CTTCCAGCCCGTTTCCACTCTCACCAAACCCATTTCCACTCTCACCAAATCCAGCCTTACCCTCT
ACCAGCCCATTTCCACCCTCTACTAGCCCATTCCCACCCTCTACCAGCCCAGTATTACCCTTAAT
TCCCCCGTTCTTCGCATCCGCAAGCTCGTATTGCACAAAAAAGTCAATGATGGTATCGTTCACCC
AGTCATTATTGTACAACGTCTTGAAATCAGCAAAACCCACCTCGATGCTCGACGCTCCAAACTGC
GCCCGTAGCGGCGGGCTGAACAGCGCCGGGTCCTCGCGCGCCGTC
Found at i:4300 original size:21 final size:21
Alignment explanation
Indices: 4276--4333 Score: 98
Period size: 21 Copynumber: 2.8 Consensus size: 21
4266 ATCCAGCCTT
*
4276 ACCCTCTACCAGCCCATTTCC
1 ACCCTCTACCAGCCCATTCCC
*
4297 ACCCTCTACTAGCCCATTCCC
1 ACCCTCTACCAGCCCATTCCC
4318 ACCCTCTACCAGCCCA
1 ACCCTCTACCAGCCCA
4334 GTATTACCCT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.21, C:0.53, G:0.05, T:0.21
Consensus pattern (21 bp):
ACCCTCTACCAGCCCATTCCC
Left flanking sequence: Indices 3776 -- 4275
CGAGCCAAGAGCCCGGGAAGCCCCCGGATCACACACCCGTACCAGTGCGAGTTCTCGTTGATGGG
GATCACCACGCTTTCGTAGGACATCACGTCGTCCATTTTCGCGAGCCAGCGGCGGACGTTGGCGT
AGTGGTCTGCGGACGACGTGAGCTTGCGGAAGAAGAACGAGTTGAACGCGTAGGTTTTGCCTGCG
GACGCTGCGAGGTTGAGCGACGGGGTGTGTGACGGCGTGGGTGACGGCGTGGAGTGGCTGGCCTG
GGAAAGAGAGTGCTCAGACGGTAGAAAGGAGACGGAAGAAGGGTTGGGGTCAGACGTAGTGTCTG
CTGCGTCCGCGGTGTCGCTGGTTTCGCCCGAGCCAAGGTTGATTGTGTCTCGCGTGGTGTCTACG
GAGCTCTCACGGGAGCCACTGGCTTCCAGCTCCAAAAGTGCTTTCTTACTTTCTTCCAGCCCGTT
TCCACTCTCACCAAACCCATTTCCACTCTCACCAAATCCAGCCTT
Right flanking sequence: Indices 4334 -- 4833
GTATTACCCTTAATTCCCCCGTTCTTCGCATCCGCAAGCTCGTATTGCACAAAAAAGTCAATGAT
GGTATCGTTCACCCAGTCATTATTGTACAACGTCTTGAAATCAGCAAAACCCACCTCGATGCTCG
ACGCTCCAAACTGCGCCCGTAGCGGCGGGCTGAACAGCGCCGGGTCCTCGCGCGCCGTCTTCTTG
AACTCCCAGCTGTCGTCCTCGTGGTCCAAGTCCACCACCTGGTGGCGGGTGCTCGTCAGAAGCCG
CAGCGACCGGCGCGTGCCCTCGGGCGCGGTTTCCTTGGCCCGGCGGGCCATCGCGGCCCGCTTGA
TCTGCCGCTTGAGCCCCGCGATCGTCTCCGGGGTCACAAGCAGCTCGGTGTCCACTTTCAGGCTC
CCCCGCCACTCCGGGTGGGTTCGGAAGTGCTCGCGGAGCGGGGCGTCCAGCGCGTTGTGGTGGAT
GAGCGCGTAGCGGTGCTCGGGCTCGTTCTGGAGCTCGATCACCAC
Found at i:4342 original size:21 final size:19
Alignment explanation
Indices: 4274--4343 Score: 68
Period size: 21 Copynumber: 3.4 Consensus size: 19
4264 AAATCCAGCC
4274 TTACCCTCTACCAGCCCAT
1 TTACCCTCTACCAGCCCAT
*
4293 TTCCACCCTCTACTAGCCCAT
1 TT--ACCCTCTACCAGCCCAT
*
4314 TCCCACCCTCTACCAGCCCAGT
1 T--TACCCTCTACCAGCCCA-T
4336 ATTACCCT
1 -TTACCCT
4344 TAATTCCCCC
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
19 2 0.05
21 37 0.90
22 1 0.02
23 1 0.02
ACGTcount: A:0.20, C:0.49, G:0.06, T:0.26
Consensus pattern (19 bp):
TTACCCTCTACCAGCCCAT
Left flanking sequence: Indices 3774 -- 4273
CCCGAGCCAAGAGCCCGGGAAGCCCCCGGATCACACACCCGTACCAGTGCGAGTTCTCGTTGATG
GGGATCACCACGCTTTCGTAGGACATCACGTCGTCCATTTTCGCGAGCCAGCGGCGGACGTTGGC
GTAGTGGTCTGCGGACGACGTGAGCTTGCGGAAGAAGAACGAGTTGAACGCGTAGGTTTTGCCTG
CGGACGCTGCGAGGTTGAGCGACGGGGTGTGTGACGGCGTGGGTGACGGCGTGGAGTGGCTGGCC
TGGGAAAGAGAGTGCTCAGACGGTAGAAAGGAGACGGAAGAAGGGTTGGGGTCAGACGTAGTGTC
TGCTGCGTCCGCGGTGTCGCTGGTTTCGCCCGAGCCAAGGTTGATTGTGTCTCGCGTGGTGTCTA
CGGAGCTCTCACGGGAGCCACTGGCTTCCAGCTCCAAAAGTGCTTTCTTACTTTCTTCCAGCCCG
TTTCCACTCTCACCAAACCCATTTCCACTCTCACCAAATCCAGCC
Right flanking sequence: Indices 4344 -- 4843
TAATTCCCCCGTTCTTCGCATCCGCAAGCTCGTATTGCACAAAAAAGTCAATGATGGTATCGTTC
ACCCAGTCATTATTGTACAACGTCTTGAAATCAGCAAAACCCACCTCGATGCTCGACGCTCCAAA
CTGCGCCCGTAGCGGCGGGCTGAACAGCGCCGGGTCCTCGCGCGCCGTCTTCTTGAACTCCCAGC
TGTCGTCCTCGTGGTCCAAGTCCACCACCTGGTGGCGGGTGCTCGTCAGAAGCCGCAGCGACCGG
CGCGTGCCCTCGGGCGCGGTTTCCTTGGCCCGGCGGGCCATCGCGGCCCGCTTGATCTGCCGCTT
GAGCCCCGCGATCGTCTCCGGGGTCACAAGCAGCTCGGTGTCCACTTTCAGGCTCCCCCGCCACT
CCGGGTGGGTTCGGAAGTGCTCGCGGAGCGGGGCGTCCAGCGCGTTGTGGTGGATGAGCGCGTAG
CGGTGCTCGGGCTCGTTCTGGAGCTCGATCACCACCTCGTTGTCG
Found at i:5776 original size:18 final size:18
Alignment explanation
Indices: 5753--5787 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
5743 GGGGGCGAGA
5753 GTATGGAAGTGGTTGGGG
1 GTATGGAAGTGGTTGGGG
*
5771 GTATGGAGGTGGTTGGG
1 GTATGGAAGTGGTTGGG
5788 TTGGGGCTCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.14, C:0.00, G:0.57, T:0.29
Consensus pattern (18 bp):
GTATGGAAGTGGTTGGGG
Left flanking sequence: Indices 5253 -- 5752
GACCAGAAAACGGACCTGCGCTGATGGTTATGTGTCTGTCAGGCAGCCGAGAGTCCTTTCTCGGG
CGTCCTGGGCCGCTCCGGATCCGGGCCCGTGCCTGGTCGTCAAGGATGCGTTTGCGGTCGGGCTT
CGCAAGGGGCACGCCCCGGGCCTCGTCCAACCGGTTAAGCTCGCTCACTATGCGTCTCAGCCGCT
CCACGGCGGTTTCCGTCAGCGCTTTCGGGTCTTCGACGGTTATCTTCAGGGCCGTGAGCTTGTTT
GTGGGCTGGGGGAGGCCCAGCGCCACTTTGCGGCGGCCCGGCGGCTGGATCAGGCCTAGCCCGCC
CAGGACCTTGTCTTTTAGCGAGCTAGACATGCTCTGGGGGGTGGTTGGCGGGGATGGGGAGGTGG
TGGTGGAGCTGATGGTGGTGAGGGATTGATCTGGGTGTGTGCAGGAGCGAGAAACGATGGAGACG
GTGAAGCAGGTGTTGTGAAGTGGTGTGGGGAATGTGGGGGCGAGA
Right flanking sequence: Indices 5788 -- 6287
TTGGGGCTCTTTGGGGCTTTGTTTCTTTTTGGCGTTTTAAAACTTGGTTTTGTGGGCTCCGTTGA
GAACGATGGAGATATCGTGGTGGGACGCGAGAAGGACGCGAGTAGGACGACTACCAGCCGGAGAG
GACAGGAAGGTGGTATTGAAGGGGGAAGATGAGTGAGAGGGTGAGAATGGGTGAGAAAGAAATGA
GATGTGTTAGACCAGCGGGGGTAGAATAGTGCGAATGGTGCTGAGACTGAGTGGGTAATATTGTT
GGAGGTAAGGCTTTTATCCACTTCAGTGGACCAAGGTGTAGTGTAACGTAGTAGAGCTAGAAAGC
TAGCCAGGCAATAGGGGACTGTGCTAGCCAGAGCGTGGTAGTTTCTTACTTGTAATGATGTAACA
GAGGATCTAAAGTGTCCGTGCTCTATCTTCAACCCACGCTACATCAATCATTGACAGGTGCTACT
ATGCCACTAGCCAAGAACCTAACCTACTCCTTATCACTCACGTGT
Found at i:9005 original size:22 final size:22
Alignment explanation
Indices: 8973--9020 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
8963 GTGGTTGTGT
*
8973 GGTGCTAGTGAGGTGCTAGTGA
1 GGTGCTAGTGAGGTGCTAGTCA
* *
8995 GGTGCTCGTGAGGTGCTCGTCA
1 GGTGCTAGTGAGGTGCTAGTCA
9017 GGTG
1 GGTG
9021 TTTGGTGTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.12, C:0.15, G:0.46, T:0.27
Consensus pattern (22 bp):
GGTGCTAGTGAGGTGCTAGTCA
Left flanking sequence: Indices 8473 -- 8972
AATCAGGGCCGCAGCAGCCTCGCCCTGGTGCGGCTGGACAAACCGCGAGCTTTGGCTCGTACGCA
AGTCCTTTTTGAGCCCAACCAACACGTAGGGTGTGGCTGGACAGTACTTTTTGACCTCCTGGACC
CACTTGGTGCAGGCGTTGTCCAACAGATCGGGCACATCGAGGGCAAACGCAATGAGGATGACGTG
GGAGTTGGCGTAGCTCAAGGGACGCAACCGCTCGTACTCTTCCTGGCCCGCGGTGTCCCAGAGCG
CGAGCCGTACGGGCTTTCCGTCGACCCGGCAGTCGGTGACGTAGTTCTCAAACACCGTGGGGTGG
TACTCCGTGGGGAACTCTCCAAGGGTAAAGACGTAAAGAAGCGAGGTTTTGCCGCAGGCTCCGTC
GCCTACAATCACGAGCTTGCGCTTTACGGCGTCGTCCGACATGGAATGGTGGTTTTGGATGGTTG
AGGTGGGATCGGAGGGTGGTTCCGACAATGGGTACGTGGTTGTGT
Right flanking sequence: Indices 9021 -- 9520
TTTGGTGTCACCACGTACGTTCAACCTAGCGGTGGTACAGCAAGACCTGGGGGTGTGTCGCTGGC
GGAGACCCGGTTGCCAACCCTAGGTAACGGGATGGTGGAGCGAGTGGCTCTGGAGGGCCCTAGTG
GACGCGGGTGGAGTGGGGTGCGTTGATGTGCCCAGACTCCGGAGAGTTGTGGTGCGTGCGCTTGG
GGACTGGGGTACAGCTGGAACAGGACCTCCGGATGGCGTTCAGGGGTCAACAGGAACAGCTGGGG
ACAGCGCTGGGGTTTCTGGCAACGAGCACGGGGGTTTGCACTAGCAATTCGCCCGCAATTTCTGG
TGGTTTGTGTGTGAAACGACAATGGCTGCACACAACGATCTGCATGGACACAGAGGTGCCGACCC
TACGACGGACAGAAAAAAGGTGGGGGCAGCGCAGGGAAGGAGCAGAGCGTTGAGAGAAACGGGTG
GAAAGAACAACAATGGGGCTTGGGTGGTGGGCCGTGTTTTCAGTA
Found at i:9020 original size:11 final size:11
Alignment explanation
Indices: 8973--9011 Score: 69
Period size: 11 Copynumber: 3.5 Consensus size: 11
8963 GTGGTTGTGT
8973 GGTGCTAGTGA
1 GGTGCTAGTGA
8984 GGTGCTAGTGA
1 GGTGCTAGTGA
*
8995 GGTGCTCGTGA
1 GGTGCTAGTGA
9006 GGTGCT
1 GGTGCT
9012 CGTCAGGTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 27 1.00
ACGTcount: A:0.13, C:0.13, G:0.46, T:0.28
Consensus pattern (11 bp):
GGTGCTAGTGA
Left flanking sequence: Indices 8473 -- 8972
AATCAGGGCCGCAGCAGCCTCGCCCTGGTGCGGCTGGACAAACCGCGAGCTTTGGCTCGTACGCA
AGTCCTTTTTGAGCCCAACCAACACGTAGGGTGTGGCTGGACAGTACTTTTTGACCTCCTGGACC
CACTTGGTGCAGGCGTTGTCCAACAGATCGGGCACATCGAGGGCAAACGCAATGAGGATGACGTG
GGAGTTGGCGTAGCTCAAGGGACGCAACCGCTCGTACTCTTCCTGGCCCGCGGTGTCCCAGAGCG
CGAGCCGTACGGGCTTTCCGTCGACCCGGCAGTCGGTGACGTAGTTCTCAAACACCGTGGGGTGG
TACTCCGTGGGGAACTCTCCAAGGGTAAAGACGTAAAGAAGCGAGGTTTTGCCGCAGGCTCCGTC
GCCTACAATCACGAGCTTGCGCTTTACGGCGTCGTCCGACATGGAATGGTGGTTTTGGATGGTTG
AGGTGGGATCGGAGGGTGGTTCCGACAATGGGTACGTGGTTGTGT
Right flanking sequence: Indices 9012 -- 9511
CGTCAGGTGTTTGGTGTCACCACGTACGTTCAACCTAGCGGTGGTACAGCAAGACCTGGGGGTGT
GTCGCTGGCGGAGACCCGGTTGCCAACCCTAGGTAACGGGATGGTGGAGCGAGTGGCTCTGGAGG
GCCCTAGTGGACGCGGGTGGAGTGGGGTGCGTTGATGTGCCCAGACTCCGGAGAGTTGTGGTGCG
TGCGCTTGGGGACTGGGGTACAGCTGGAACAGGACCTCCGGATGGCGTTCAGGGGTCAACAGGAA
CAGCTGGGGACAGCGCTGGGGTTTCTGGCAACGAGCACGGGGGTTTGCACTAGCAATTCGCCCGC
AATTTCTGGTGGTTTGTGTGTGAAACGACAATGGCTGCACACAACGATCTGCATGGACACAGAGG
TGCCGACCCTACGACGGACAGAAAAAAGGTGGGGGCAGCGCAGGGAAGGAGCAGAGCGTTGAGAG
AAACGGGTGGAAAGAACAACAATGGGGCTTGGGTGGTGGGCCGTG
Found at i:11222 original size:12 final size:12
Alignment explanation
Indices: 11202--11235 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
11192 TATTAAACTG
*
11202 CCTGGCTTTTGT
1 CCTGACTTTTGT
11214 CCTGACTTTTGT
1 CCTGACTTTTGT
11226 CCTGACTTTT
1 CCTGACTTTT
11236 CCTGCCTCAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.06, C:0.26, G:0.18, T:0.50
Consensus pattern (12 bp):
CCTGACTTTTGT
Left flanking sequence: Indices 10702 -- 11201
CGTGACCGAAGAGTGATTTGGAAAGGCTCCATTAGCGATCTAAAAAGCGTAACAAAACATAGGGC
TGTGCATGACTTCTAAAGCGGTATCTCCGAACTGGCTTCACATTGGAAGGACGACCTCAATTGCA
ATTGGTGATGTTGGTTCGTGTGAAGAGTGATGTGAAATCACGAAAACTGTGCCATTGAGCCTAGT
CCAGGGTTTCACACCCCCATTCGACGATAGAGGCCAGCTGCAACATGCCTCACCTATACAGTTTA
GACCGGTCGTCTGCGACTACGCTATTAAAAATGCTACAAAATAGCCATGTCTACATTGATAAAAA
CCAGGGGTACTTATTTGTTTTGATACCGAGGTCAAAGAATTTAAAAGACACCATTCATCATACAT
GCTCGCTTTAAGTGTAAAAAATAACCCAATTAGGCAATTGTTCAGGCTGTGTATACAATGAAATC
CAAAGGAAGCATGGTCATTCTCTATAAAATGACATTATTAAACTG
Right flanking sequence: Indices 11236 -- 11735
CCTGCCTCACATTTTCGTTCTCACCCGCATATTGACACCTTCGGTGCATACTGGCCCTGCACCAC
CAAATACAAGTGTATACAACTACCCCACTCATAAATTATTGTTACTTACCACCCCGACTCATTGA
TTCTTGTTGACCACCCCTCCTTTACGCCTCCTACGTCTCTTTCCATCTCCATCCGTCTCTTACGT
CCCTACTCTTACGTCCATATCATTACACACCTAGTTCCACAACGACCGGGTCCCGTACTGTCCCA
AAAGGTCCGGCTGGGCAAACTGCGGCAGCAGCGCAAACGGCACCTGGCTGATCTGGCCCGGAGCA
GGGTTCCCCAGCAGCGGCAGCACCTTGACATGGGTCACCGTGCCCACGTCGTCGTAAATAATGTC
GAACGTGTAGTGGTGGGACGTCCGGATCAGCGTCAAGAACTGCCCGAGGGTGAGCAGCGCACCCA
CGAGCGTCCGCACCTGGGCAAAGAGCTTCAGCACGGGGGCCACGC
Found at i:11936 original size:21 final size:21
Alignment explanation
Indices: 11906--11953 Score: 87
Period size: 21 Copynumber: 2.3 Consensus size: 21
11896 GCCGAGATTT
*
11906 TGGGATTGGCCGAGCCCGGTC
1 TGGGACTGGCCGAGCCCGGTC
11927 TGGGACTGGCCGAGCCCGGTC
1 TGGGACTGGCCGAGCCCGGTC
11948 TGGGAC
1 TGGGAC
11954 AGATTCAATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.10, C:0.29, G:0.44, T:0.17
Consensus pattern (21 bp):
TGGGACTGGCCGAGCCCGGTC
Left flanking sequence: Indices 11406 -- 11905
TTCCATCTCCATCCGTCTCTTACGTCCCTACTCTTACGTCCATATCATTACACACCTAGTTCCAC
AACGACCGGGTCCCGTACTGTCCCAAAAGGTCCGGCTGGGCAAACTGCGGCAGCAGCGCAAACGG
CACCTGGCTGATCTGGCCCGGAGCAGGGTTCCCCAGCAGCGGCAGCACCTTGACATGGGTCACCG
TGCCCACGTCGTCGTAAATAATGTCGAACGTGTAGTGGTGGGACGTCCGGATCAGCGTCAAGAAC
TGCCCGAGGGTGAGCAGCGCACCCACGAGCGTCCGCACCTGGGCAAAGAGCTTCAGCACGGGGGC
CACGCCAAACTCGAGCGCGCCCTGCTGCTGCAACTGGTGATAGGCGTTGTAGGTGGCCAACTGGA
TGACGTCGGCGTCGCCGCCGGCCACCAGCAGCACCATGGGCGACGACGAGTTGAGCGAGGCAAGC
AGGGGCTGGGGCTGGGTCTGGGACGGTTGAGACTGGCCGAGATTT
Right flanking sequence: Indices 11954 -- 12453
AGATTCAATCCGTTGCCTAAACCCTGGTTCTGGCCTAGGCCTTGGGTCTGGCCTAATCCTTGAGT
CTGACCCAAGCCCTGGTTCTGACCCAAGCCCTGGTTCTGGCCCAATCCTTGGCTCATCCCTTGAC
CCAAGCCTTGACCCATCCCCTGGCTCTGACTCATCCCAAAGCCCAGTTGCGAGAGCGTCCGTGGC
ATCATCTGAGGCGTGGCCAGCCCCAGCTGCGAGCCCCAGAGCAGCGGCAGCGCCGTCTGGCCCGG
CTGCGGCCCCAGAAGTGACGTCTGACGGGTGCTGGGCTGGCTCCAGATCAGGTTGCGCTGGGGAG
TGGCTTGGCCAGCACTGGACCCGGCCCACTGGGACCCAAAAGGCTCGGAGAACGGCGAGAATTGC
AGCGGCTGGCCCAACAACGGGTTGGCCAGCGCCAAGAACGGCAGTGCTCCGCCCAACGTCAGGCC
CCCGAGGATGGGGGTGCCGCTCACGAGCAGCGCCAGCGTCGTCCA
Found at i:12014 original size:18 final size:18
Alignment explanation
Indices: 11968--12021 Score: 54
Period size: 18 Copynumber: 3.0 Consensus size: 18
11958 TCAATCCGTT
* *
11968 GCCTAAACCCTGGTTCTG
1 GCCTAAACCTTGGGTCTG
**
11986 GCCTAGGCCTTGGGTCTG
1 GCCTAAACCTTGGGTCTG
* *
12004 GCCTAATCCTTGAGTCTG
1 GCCTAAACCTTGGGTCTG
12022 ACCCAAGCCC
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.13, C:0.30, G:0.28, T:0.30
Consensus pattern (18 bp):
GCCTAAACCTTGGGTCTG
Left flanking sequence: Indices 11468 -- 11967
CACAACGACCGGGTCCCGTACTGTCCCAAAAGGTCCGGCTGGGCAAACTGCGGCAGCAGCGCAAA
CGGCACCTGGCTGATCTGGCCCGGAGCAGGGTTCCCCAGCAGCGGCAGCACCTTGACATGGGTCA
CCGTGCCCACGTCGTCGTAAATAATGTCGAACGTGTAGTGGTGGGACGTCCGGATCAGCGTCAAG
AACTGCCCGAGGGTGAGCAGCGCACCCACGAGCGTCCGCACCTGGGCAAAGAGCTTCAGCACGGG
GGCCACGCCAAACTCGAGCGCGCCCTGCTGCTGCAACTGGTGATAGGCGTTGTAGGTGGCCAACT
GGATGACGTCGGCGTCGCCGCCGGCCACCAGCAGCACCATGGGCGACGACGAGTTGAGCGAGGCA
AGCAGGGGCTGGGGCTGGGTCTGGGACGGTTGAGACTGGCCGAGATTTTGGGATTGGCCGAGCCC
GGTCTGGGACTGGCCGAGCCCGGTCTGGGACAGATTCAATCCGTT
Right flanking sequence: Indices 12022 -- 12521
ACCCAAGCCCTGGTTCTGACCCAAGCCCTGGTTCTGGCCCAATCCTTGGCTCATCCCTTGACCCA
AGCCTTGACCCATCCCCTGGCTCTGACTCATCCCAAAGCCCAGTTGCGAGAGCGTCCGTGGCATC
ATCTGAGGCGTGGCCAGCCCCAGCTGCGAGCCCCAGAGCAGCGGCAGCGCCGTCTGGCCCGGCTG
CGGCCCCAGAAGTGACGTCTGACGGGTGCTGGGCTGGCTCCAGATCAGGTTGCGCTGGGGAGTGG
CTTGGCCAGCACTGGACCCGGCCCACTGGGACCCAAAAGGCTCGGAGAACGGCGAGAATTGCAGC
GGCTGGCCCAACAACGGGTTGGCCAGCGCCAAGAACGGCAGTGCTCCGCCCAACGTCAGGCCCCC
GAGGATGGGGGTGCCGCTCACGAGCAGCGCCAGCGTCGTCCACGGCAGCAGCAGGCCCCGCAGGC
CCAGCCCGCGGTAGGCGGGCCCGTTGGCCTGGGAGGTTCCGGGGG
Found at i:12039 original size:18 final size:18
Alignment explanation
Indices: 12018--12063 Score: 83
Period size: 18 Copynumber: 2.6 Consensus size: 18
12008 AATCCTTGAG
12018 TCTGACCCAAGCCCTGGT
1 TCTGACCCAAGCCCTGGT
12036 TCTGACCCAAGCCCTGGT
1 TCTGACCCAAGCCCTGGT
*
12054 TCTGGCCCAA
1 TCTGACCCAA
12064 TCCTTGGCTC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.17, C:0.39, G:0.22, T:0.22
Consensus pattern (18 bp):
TCTGACCCAAGCCCTGGT
Left flanking sequence: Indices 11518 -- 12017
CGGCAGCAGCGCAAACGGCACCTGGCTGATCTGGCCCGGAGCAGGGTTCCCCAGCAGCGGCAGCA
CCTTGACATGGGTCACCGTGCCCACGTCGTCGTAAATAATGTCGAACGTGTAGTGGTGGGACGTC
CGGATCAGCGTCAAGAACTGCCCGAGGGTGAGCAGCGCACCCACGAGCGTCCGCACCTGGGCAAA
GAGCTTCAGCACGGGGGCCACGCCAAACTCGAGCGCGCCCTGCTGCTGCAACTGGTGATAGGCGT
TGTAGGTGGCCAACTGGATGACGTCGGCGTCGCCGCCGGCCACCAGCAGCACCATGGGCGACGAC
GAGTTGAGCGAGGCAAGCAGGGGCTGGGGCTGGGTCTGGGACGGTTGAGACTGGCCGAGATTTTG
GGATTGGCCGAGCCCGGTCTGGGACTGGCCGAGCCCGGTCTGGGACAGATTCAATCCGTTGCCTA
AACCCTGGTTCTGGCCTAGGCCTTGGGTCTGGCCTAATCCTTGAG
Right flanking sequence: Indices 12064 -- 12563
TCCTTGGCTCATCCCTTGACCCAAGCCTTGACCCATCCCCTGGCTCTGACTCATCCCAAAGCCCA
GTTGCGAGAGCGTCCGTGGCATCATCTGAGGCGTGGCCAGCCCCAGCTGCGAGCCCCAGAGCAGC
GGCAGCGCCGTCTGGCCCGGCTGCGGCCCCAGAAGTGACGTCTGACGGGTGCTGGGCTGGCTCCA
GATCAGGTTGCGCTGGGGAGTGGCTTGGCCAGCACTGGACCCGGCCCACTGGGACCCAAAAGGCT
CGGAGAACGGCGAGAATTGCAGCGGCTGGCCCAACAACGGGTTGGCCAGCGCCAAGAACGGCAGT
GCTCCGCCCAACGTCAGGCCCCCGAGGATGGGGGTGCCGCTCACGAGCAGCGCCAGCGTCGTCCA
CGGCAGCAGCAGGCCCCGCAGGCCCAGCCCGCGGTAGGCGGGCCCGTTGGCCTGGGAGGTTCCGG
GGGGTCCCGGGTTGAGTCCCGGGGGCGGCAGCGGGGTGTACTTGG
Found at i:12898 original size:18 final size:18
Alignment explanation
Indices: 12836--12882 Score: 85
Period size: 18 Copynumber: 2.6 Consensus size: 18
12826 TTGGGGGCCA
12836 GACTGGGCATTGGCACCG
1 GACTGGGCATTGGCACCG
12854 GACTGGGCATTGGCACCG
1 GACTGGGCATTGGCACCG
*
12872 GCCTGGGCATT
1 GACTGGGCATT
12883 CGAGCCCGAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.15, C:0.28, G:0.38, T:0.19
Consensus pattern (18 bp):
GACTGGGCATTGGCACCG
Left flanking sequence: Indices 12336 -- 12835
AGAATTGCAGCGGCTGGCCCAACAACGGGTTGGCCAGCGCCAAGAACGGCAGTGCTCCGCCCAAC
GTCAGGCCCCCGAGGATGGGGGTGCCGCTCACGAGCAGCGCCAGCGTCGTCCACGGCAGCAGCAG
GCCCCGCAGGCCCAGCCCGCGGTAGGCGGGCCCGTTGGCCTGGGAGGTTCCGGGGGGTCCCGGGT
TGAGTCCCGGGGGCGGCAGCGGGGTGTACTTGGGGCCGCGCACCGCGTCCAACGGTGCCAGTTGT
TGGTACAACAGATCGAGCAACGGGTTGGATCCGAGCGGGTGGTCGTCGCCGAACCCCTCGAGGGG
CGTGGGGAGCTGGGACGGGTGCGACCCGAGCCCGGGGGGGCCCGCCATCACGGGGCGGGGTCCGT
AGGGGGACCCGGTGGCGGCGTCGGTGCCCCGGGGCACGGTGTGCGGGTCCACAGGGGACTCGCGG
CCCGGGCGGGAAGGCTGGGTGGAGGCGTGGCTGGGTTGGGGGCCA
Right flanking sequence: Indices 12883 -- 13382
CGAGCCCGACTGGGCAGAGCCCTGGCGTGCCTTCTCCCGGGCCTCCTCCCGTCGCACCTCTTCCC
GTCTCTTCTCCTCTTTTCGCTCCTCCTTCTTCCGCTCCTCCTTCTTCCGCTCCTCTTCTCTCCTC
TCCTCCTCCCTTCTCTCCTCTTCTCGTCGCTCCTCCTCCTCCACCCGCGCGCGCTCCTCGTCCTC
CTTGCGCCGCTTCTCCTCCTCCTTGCGCCGCATCTCCTCGATCCGCCGCCGCTTCTCCTCGTCCT
TCTTCTGCTGCTTCTCCTCCTTGCGCCGGCGCTGCTCGGCCCTTTGTGCCTCCTGGCGCGCGCGC
ACCTCCTCCTCCTCCTTGGCCGCCGCCTCCGCCGCCGCCCGGCGCTCCTCCTCCTTGGCCGCCGC
CGCCAACTTCTTCTTCTCGCGCTGGCGCTCCTTCTGGCGCGCCTTCTTGGCCTCGCGCTCCTTCT
TGGCCGTCTCCTCCGCCTCCAACTCCTCGATCAACTGCTGGGTGC
Found at i:12983 original size:15 final size:15
Alignment explanation
Indices: 12965--13019 Score: 85
Period size: 15 Copynumber: 3.7 Consensus size: 15
12955 CTCCTCTTTT
12965 CGCTCCTCCTTCTTC
1 CGCTCCTCCTTCTTC
12980 CGCTCCTCCTTCTTC
1 CGCTCCTCCTTCTTC
12995 CGCTCCT-CTTCTCTC
1 CGCTCCTCCTTCT-TC
*
13010 CTCTCCTCCT
1 CGCTCCTCCT
13020 CCCTTCTCTC
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
14 5 0.14
15 30 0.81
16 2 0.05
ACGTcount: A:0.00, C:0.55, G:0.05, T:0.40
Consensus pattern (15 bp):
CGCTCCTCCTTCTTC
Left flanking sequence: Indices 12465 -- 12964
GGCCCCGCAGGCCCAGCCCGCGGTAGGCGGGCCCGTTGGCCTGGGAGGTTCCGGGGGGTCCCGGG
TTGAGTCCCGGGGGCGGCAGCGGGGTGTACTTGGGGCCGCGCACCGCGTCCAACGGTGCCAGTTG
TTGGTACAACAGATCGAGCAACGGGTTGGATCCGAGCGGGTGGTCGTCGCCGAACCCCTCGAGGG
GCGTGGGGAGCTGGGACGGGTGCGACCCGAGCCCGGGGGGGCCCGCCATCACGGGGCGGGGTCCG
TAGGGGGACCCGGTGGCGGCGTCGGTGCCCCGGGGCACGGTGTGCGGGTCCACAGGGGACTCGCG
GCCCGGGCGGGAAGGCTGGGTGGAGGCGTGGCTGGGTTGGGGGCCAGACTGGGCATTGGCACCGG
ACTGGGCATTGGCACCGGCCTGGGCATTCGAGCCCGACTGGGCAGAGCCCTGGCGTGCCTTCTCC
CGGGCCTCCTCCCGTCGCACCTCTTCCCGTCTCTTCTCCTCTTTT
Right flanking sequence: Indices 13020 -- 13519
CCCTTCTCTCCTCTTCTCGTCGCTCCTCCTCCTCCACCCGCGCGCGCTCCTCGTCCTCCTTGCGC
CGCTTCTCCTCCTCCTTGCGCCGCATCTCCTCGATCCGCCGCCGCTTCTCCTCGTCCTTCTTCTG
CTGCTTCTCCTCCTTGCGCCGGCGCTGCTCGGCCCTTTGTGCCTCCTGGCGCGCGCGCACCTCCT
CCTCCTCCTTGGCCGCCGCCTCCGCCGCCGCCCGGCGCTCCTCCTCCTTGGCCGCCGCCGCCAAC
TTCTTCTTCTCGCGCTGGCGCTCCTTCTGGCGCGCCTTCTTGGCCTCGCGCTCCTTCTTGGCCGT
CTCCTCCGCCTCCAACTCCTCGATCAACTGCTGGGTGCGGTCCTCGGCCACCTTGGCCTTGTAGG
CGTTCTTCAACCGCTCCTGGAACAACTTGATCACCTGGATGAGAAACAACCGCCGGATCTCCTGC
ATCTTCTCTTCCTCCAGGATCTCCAGCTCGGTGTCGCTGACGGCG
Found at i:12989 original size:30 final size:29
Alignment explanation
Indices: 12955--13050 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 29
12945 CCCGTCTCTT
12955 CTCCTCTTTTCGCTCCTCCTTCTTCCGCTC
1 CTCCTCTTTTCGCTCCT-CTTCTTCCGCTC
* *
12985 CTCCT-TCTTCCGCTCCTCTTCTCTCCTCTC
1 CTCCTCT-TTTCGCTCCTCTTCT-TCCGCTC
** *
13015 CTCCTCCCTTCTCTCCTCTTC-TCGTCGCTC
1 CTCCTCTTTTCGCTCCTCTTCTTC--CGCTC
13045 CTCCTC
1 CTCCTC
13051 CTCCACCCGC
Statistics
Matches: 54, Mismatches: 7, Indels: 10
0.76 0.10 0.14
Matches are distributed among these distances:
28 2 0.04
29 6 0.11
30 46 0.85
ACGTcount: A:0.00, C:0.53, G:0.05, T:0.42
Consensus pattern (29 bp):
CTCCTCTTTTCGCTCCTCTTCTTCCGCTC
Left flanking sequence: Indices 12455 -- 12954
GGCAGCAGCAGGCCCCGCAGGCCCAGCCCGCGGTAGGCGGGCCCGTTGGCCTGGGAGGTTCCGGG
GGGTCCCGGGTTGAGTCCCGGGGGCGGCAGCGGGGTGTACTTGGGGCCGCGCACCGCGTCCAACG
GTGCCAGTTGTTGGTACAACAGATCGAGCAACGGGTTGGATCCGAGCGGGTGGTCGTCGCCGAAC
CCCTCGAGGGGCGTGGGGAGCTGGGACGGGTGCGACCCGAGCCCGGGGGGGCCCGCCATCACGGG
GCGGGGTCCGTAGGGGGACCCGGTGGCGGCGTCGGTGCCCCGGGGCACGGTGTGCGGGTCCACAG
GGGACTCGCGGCCCGGGCGGGAAGGCTGGGTGGAGGCGTGGCTGGGTTGGGGGCCAGACTGGGCA
TTGGCACCGGACTGGGCATTGGCACCGGCCTGGGCATTCGAGCCCGACTGGGCAGAGCCCTGGCG
TGCCTTCTCCCGGGCCTCCTCCCGTCGCACCTCTTCCCGTCTCTT
Right flanking sequence: Indices 13051 -- 13550
CTCCACCCGCGCGCGCTCCTCGTCCTCCTTGCGCCGCTTCTCCTCCTCCTTGCGCCGCATCTCCT
CGATCCGCCGCCGCTTCTCCTCGTCCTTCTTCTGCTGCTTCTCCTCCTTGCGCCGGCGCTGCTCG
GCCCTTTGTGCCTCCTGGCGCGCGCGCACCTCCTCCTCCTCCTTGGCCGCCGCCTCCGCCGCCGC
CCGGCGCTCCTCCTCCTTGGCCGCCGCCGCCAACTTCTTCTTCTCGCGCTGGCGCTCCTTCTGGC
GCGCCTTCTTGGCCTCGCGCTCCTTCTTGGCCGTCTCCTCCGCCTCCAACTCCTCGATCAACTGC
TGGGTGCGGTCCTCGGCCACCTTGGCCTTGTAGGCGTTCTTCAACCGCTCCTGGAACAACTTGAT
CACCTGGATGAGAAACAACCGCCGGATCTCCTGCATCTTCTCTTCCTCCAGGATCTCCAGCTCGG
TGTCGCTGACGGCGTCCTCCAGGAGCTCGCCCTCGGACTCCAGGA
Found at i:13012 original size:10 final size:10
Alignment explanation
Indices: 12997--13037 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
12987 CCTTCTTCCG
12997 CTCCTCTTCT
1 CTCCTCTTCT
*
13007 CTCCTCTCCT
1 CTCCTCTTCT
13017 CCTCC-CTTCT
1 -CTCCTCTTCT
13027 CTCCTCTTCT
1 CTCCTCTTCT
13037 C
1 C
13038 GTCGCTCCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
9 4 0.15
10 19 0.70
11 4 0.15
ACGTcount: A:0.00, C:0.56, G:0.00, T:0.44
Consensus pattern (10 bp):
CTCCTCTTCT
Left flanking sequence: Indices 12497 -- 12996
CCGTTGGCCTGGGAGGTTCCGGGGGGTCCCGGGTTGAGTCCCGGGGGCGGCAGCGGGGTGTACTT
GGGGCCGCGCACCGCGTCCAACGGTGCCAGTTGTTGGTACAACAGATCGAGCAACGGGTTGGATC
CGAGCGGGTGGTCGTCGCCGAACCCCTCGAGGGGCGTGGGGAGCTGGGACGGGTGCGACCCGAGC
CCGGGGGGGCCCGCCATCACGGGGCGGGGTCCGTAGGGGGACCCGGTGGCGGCGTCGGTGCCCCG
GGGCACGGTGTGCGGGTCCACAGGGGACTCGCGGCCCGGGCGGGAAGGCTGGGTGGAGGCGTGGC
TGGGTTGGGGGCCAGACTGGGCATTGGCACCGGACTGGGCATTGGCACCGGCCTGGGCATTCGAG
CCCGACTGGGCAGAGCCCTGGCGTGCCTTCTCCCGGGCCTCCTCCCGTCGCACCTCTTCCCGTCT
CTTCTCCTCTTTTCGCTCCTCCTTCTTCCGCTCCTCCTTCTTCCG
Right flanking sequence: Indices 13038 -- 13537
GTCGCTCCTCCTCCTCCACCCGCGCGCGCTCCTCGTCCTCCTTGCGCCGCTTCTCCTCCTCCTTG
CGCCGCATCTCCTCGATCCGCCGCCGCTTCTCCTCGTCCTTCTTCTGCTGCTTCTCCTCCTTGCG
CCGGCGCTGCTCGGCCCTTTGTGCCTCCTGGCGCGCGCGCACCTCCTCCTCCTCCTTGGCCGCCG
CCTCCGCCGCCGCCCGGCGCTCCTCCTCCTTGGCCGCCGCCGCCAACTTCTTCTTCTCGCGCTGG
CGCTCCTTCTGGCGCGCCTTCTTGGCCTCGCGCTCCTTCTTGGCCGTCTCCTCCGCCTCCAACTC
CTCGATCAACTGCTGGGTGCGGTCCTCGGCCACCTTGGCCTTGTAGGCGTTCTTCAACCGCTCCT
GGAACAACTTGATCACCTGGATGAGAAACAACCGCCGGATCTCCTGCATCTTCTCTTCCTCCAGG
ATCTCCAGCTCGGTGTCGCTGACGGCGTCCTCCAGGAGCTCGCCC
Found at i:13051 original size:30 final size:31
Alignment explanation
Indices: 12965--13051 Score: 101
Period size: 30 Copynumber: 2.9 Consensus size: 31
12955 CTCCTCTTTT
*
12965 CGCTCCTCCTTCT-TCCGCTCCTCCT-TCTTC
1 CGCTCCT-CTTCTCTCCGCTCCTCCTCCCTTC
*
12995 CGCTCCTCTTCTCTCCTCTCCTCCTCCCTT-
1 CGCTCCTCTTCTCTCCGCTCCTCCTCCCTTC
*
13025 CTCTCCTCTTCTCGT-CGCTCCTCCTCC
1 CGCTCCTCTTCTC-TCCGCTCCTCCTCC
13052 TCCACCCGCG
Statistics
Matches: 50, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
29 5 0.10
30 41 0.82
31 4 0.08
ACGTcount: A:0.00, C:0.55, G:0.06, T:0.39
Consensus pattern (31 bp):
CGCTCCTCTTCTCTCCGCTCCTCCTCCCTTC
Left flanking sequence: Indices 12465 -- 12964
GGCCCCGCAGGCCCAGCCCGCGGTAGGCGGGCCCGTTGGCCTGGGAGGTTCCGGGGGGTCCCGGG
TTGAGTCCCGGGGGCGGCAGCGGGGTGTACTTGGGGCCGCGCACCGCGTCCAACGGTGCCAGTTG
TTGGTACAACAGATCGAGCAACGGGTTGGATCCGAGCGGGTGGTCGTCGCCGAACCCCTCGAGGG
GCGTGGGGAGCTGGGACGGGTGCGACCCGAGCCCGGGGGGGCCCGCCATCACGGGGCGGGGTCCG
TAGGGGGACCCGGTGGCGGCGTCGGTGCCCCGGGGCACGGTGTGCGGGTCCACAGGGGACTCGCG
GCCCGGGCGGGAAGGCTGGGTGGAGGCGTGGCTGGGTTGGGGGCCAGACTGGGCATTGGCACCGG
ACTGGGCATTGGCACCGGCCTGGGCATTCGAGCCCGACTGGGCAGAGCCCTGGCGTGCCTTCTCC
CGGGCCTCCTCCCGTCGCACCTCTTCCCGTCTCTTCTCCTCTTTT
Right flanking sequence: Indices 13052 -- 13551
TCCACCCGCGCGCGCTCCTCGTCCTCCTTGCGCCGCTTCTCCTCCTCCTTGCGCCGCATCTCCTC
GATCCGCCGCCGCTTCTCCTCGTCCTTCTTCTGCTGCTTCTCCTCCTTGCGCCGGCGCTGCTCGG
CCCTTTGTGCCTCCTGGCGCGCGCGCACCTCCTCCTCCTCCTTGGCCGCCGCCTCCGCCGCCGCC
CGGCGCTCCTCCTCCTTGGCCGCCGCCGCCAACTTCTTCTTCTCGCGCTGGCGCTCCTTCTGGCG
CGCCTTCTTGGCCTCGCGCTCCTTCTTGGCCGTCTCCTCCGCCTCCAACTCCTCGATCAACTGCT
GGGTGCGGTCCTCGGCCACCTTGGCCTTGTAGGCGTTCTTCAACCGCTCCTGGAACAACTTGATC
ACCTGGATGAGAAACAACCGCCGGATCTCCTGCATCTTCTCTTCCTCCAGGATCTCCAGCTCGGT
GTCGCTGACGGCGTCCTCCAGGAGCTCGCCCTCGGACTCCAGGAG
Found at i:13088 original size:21 final size:21
Alignment explanation
Indices: 13045--13116 Score: 76
Period size: 21 Copynumber: 3.4 Consensus size: 21
13035 CTCGTCGCTC
* *
13045 CTCCTCCTCCACC-CGCGCGCG
1 CTCCTCCTCCTCCTTGCGC-CG
*
13066 CTCCTCGTCCTCCTTGCGCCG
1 CTCCTCCTCCTCCTTGCGCCG
*
13087 CTTCTCCTCCTCCTTGCGCCG
1 CTCCTCCTCCTCCTTGCGCCG
13108 CAT-CTCCTC
1 C-TCCTCCTC
13117 GATCCGCCGC
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
21 39 0.89
22 5 0.11
ACGTcount: A:0.03, C:0.56, G:0.15, T:0.26
Consensus pattern (21 bp):
CTCCTCCTCCTCCTTGCGCCG
Left flanking sequence: Indices 12545 -- 13044
GGCAGCGGGGTGTACTTGGGGCCGCGCACCGCGTCCAACGGTGCCAGTTGTTGGTACAACAGATC
GAGCAACGGGTTGGATCCGAGCGGGTGGTCGTCGCCGAACCCCTCGAGGGGCGTGGGGAGCTGGG
ACGGGTGCGACCCGAGCCCGGGGGGGCCCGCCATCACGGGGCGGGGTCCGTAGGGGGACCCGGTG
GCGGCGTCGGTGCCCCGGGGCACGGTGTGCGGGTCCACAGGGGACTCGCGGCCCGGGCGGGAAGG
CTGGGTGGAGGCGTGGCTGGGTTGGGGGCCAGACTGGGCATTGGCACCGGACTGGGCATTGGCAC
CGGCCTGGGCATTCGAGCCCGACTGGGCAGAGCCCTGGCGTGCCTTCTCCCGGGCCTCCTCCCGT
CGCACCTCTTCCCGTCTCTTCTCCTCTTTTCGCTCCTCCTTCTTCCGCTCCTCCTTCTTCCGCTC
CTCTTCTCTCCTCTCCTCCTCCCTTCTCTCCTCTTCTCGTCGCTC
Right flanking sequence: Indices 13117 -- 13616
GATCCGCCGCCGCTTCTCCTCGTCCTTCTTCTGCTGCTTCTCCTCCTTGCGCCGGCGCTGCTCGG
CCCTTTGTGCCTCCTGGCGCGCGCGCACCTCCTCCTCCTCCTTGGCCGCCGCCTCCGCCGCCGCC
CGGCGCTCCTCCTCCTTGGCCGCCGCCGCCAACTTCTTCTTCTCGCGCTGGCGCTCCTTCTGGCG
CGCCTTCTTGGCCTCGCGCTCCTTCTTGGCCGTCTCCTCCGCCTCCAACTCCTCGATCAACTGCT
GGGTGCGGTCCTCGGCCACCTTGGCCTTGTAGGCGTTCTTCAACCGCTCCTGGAACAACTTGATC
ACCTGGATGAGAAACAACCGCCGGATCTCCTGCATCTTCTCTTCCTCCAGGATCTCCAGCTCGGT
GTCGCTGACGGCGTCCTCCAGGAGCTCGCCCTCGGACTCCAGGAGCTCGTCGTCGGGGTGCGGGT
GGCTGTGCGGGTCGTCCCAGTGCCGCGGCTCGTGCTCCGGGTGCT
Found at i:13093 original size:24 final size:24
Alignment explanation
Indices: 13066--13161 Score: 82
Period size: 21 Copynumber: 4.2 Consensus size: 24
13056 CCCGCGCGCG
13066 CTCCTCGTCCTCCTTGCGCCGCTT
1 CTCCTCGTCCTCCTTGCGCCGCTT
*
13090 CT-C-C-TCCTCCTTGCGCCGCAT
1 CTCCTCGTCCTCCTTGCGCCGCTT
*
13111 CTCCTCG--ATCC--GCCGCCGCTT
1 CTCCTCGTCCTCCTTG-CGCCGCTT
* *
13132 CTCCTCGTCCTTCTT-CTGCTGCTT
1 CTCCTCGTCCTCCTTGC-GCCGCTT
13156 CTCCTC
1 CTCCTC
13162 CTTGCGCCGG
Statistics
Matches: 57, Mismatches: 6, Indels: 18
0.70 0.07 0.22
Matches are distributed among these distances:
20 1 0.02
21 32 0.56
22 5 0.09
23 5 0.09
24 14 0.25
ACGTcount: A:0.02, C:0.50, G:0.15, T:0.33
Consensus pattern (24 bp):
CTCCTCGTCCTCCTTGCGCCGCTT
Left flanking sequence: Indices 12566 -- 13065
CCGCGCACCGCGTCCAACGGTGCCAGTTGTTGGTACAACAGATCGAGCAACGGGTTGGATCCGAG
CGGGTGGTCGTCGCCGAACCCCTCGAGGGGCGTGGGGAGCTGGGACGGGTGCGACCCGAGCCCGG
GGGGGCCCGCCATCACGGGGCGGGGTCCGTAGGGGGACCCGGTGGCGGCGTCGGTGCCCCGGGGC
ACGGTGTGCGGGTCCACAGGGGACTCGCGGCCCGGGCGGGAAGGCTGGGTGGAGGCGTGGCTGGG
TTGGGGGCCAGACTGGGCATTGGCACCGGACTGGGCATTGGCACCGGCCTGGGCATTCGAGCCCG
ACTGGGCAGAGCCCTGGCGTGCCTTCTCCCGGGCCTCCTCCCGTCGCACCTCTTCCCGTCTCTTC
TCCTCTTTTCGCTCCTCCTTCTTCCGCTCCTCCTTCTTCCGCTCCTCTTCTCTCCTCTCCTCCTC
CCTTCTCTCCTCTTCTCGTCGCTCCTCCTCCTCCACCCGCGCGCG
Right flanking sequence: Indices 13162 -- 13661
CTTGCGCCGGCGCTGCTCGGCCCTTTGTGCCTCCTGGCGCGCGCGCACCTCCTCCTCCTCCTTGG
CCGCCGCCTCCGCCGCCGCCCGGCGCTCCTCCTCCTTGGCCGCCGCCGCCAACTTCTTCTTCTCG
CGCTGGCGCTCCTTCTGGCGCGCCTTCTTGGCCTCGCGCTCCTTCTTGGCCGTCTCCTCCGCCTC
CAACTCCTCGATCAACTGCTGGGTGCGGTCCTCGGCCACCTTGGCCTTGTAGGCGTTCTTCAACC
GCTCCTGGAACAACTTGATCACCTGGATGAGAAACAACCGCCGGATCTCCTGCATCTTCTCTTCC
TCCAGGATCTCCAGCTCGGTGTCGCTGACGGCGTCCTCCAGGAGCTCGCCCTCGGACTCCAGGAG
CTCGTCGTCGGGGTGCGGGTGGCTGTGCGGGTCGTCCCAGTGCCGCGGCTCGTGCTCCGGGTGCT
GGCACTGGCTGTCGTGGTAGTGGCCGTCGCGGTGGTCGTCGTCGT
Found at i:13966 original size:9 final size:9
Alignment explanation
Indices: 13952--14005 Score: 63
Period size: 9 Copynumber: 6.0 Consensus size: 9
13942 GGCGTTGGTG
13952 TTGGTTGCA
1 TTGGTTGCA
*
13961 TTGGTTGCG
1 TTGGTTGCA
*
13970 TTGGTGGCA
1 TTGGTTGCA
* *
13979 ATGGTTGCG
1 TTGGTTGCA
*
13988 TTGGTTGCG
1 TTGGTTGCA
13997 TTGGTTGCA
1 TTGGTTGCA
14006 ATGGCATTGG
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
9 37 1.00
ACGTcount: A:0.07, C:0.11, G:0.41, T:0.41
Consensus pattern (9 bp):
TTGGTTGCA
Left flanking sequence: Indices 13452 -- 13951
GAAACAACCGCCGGATCTCCTGCATCTTCTCTTCCTCCAGGATCTCCAGCTCGGTGTCGCTGACG
GCGTCCTCCAGGAGCTCGCCCTCGGACTCCAGGAGCTCGTCGTCGGGGTGCGGGTGGCTGTGCGG
GTCGTCCCAGTGCCGCGGCTCGTGCTCCGGGTGCTGGCACTGGCTGTCGTGGTAGTGGCCGTCGC
GGTGGTCGTCGTCGTCGCCGCCGTCGTCCAGCTCGTCTGCGAGCTCGCGGGCGAGCTGCTCGGAG
AACATCTTCACCCGCGGGTCCACCGGGTGGCCGTCGTCGTCGGGCATCTTGAGGAGCTCCTCGCG
GGCCAGGCGCAGCTCCAGCAACAGCTCCATCATCTCGATGAACAGGTGGCCGTCGTTCTTGAGGA
GGTCCTCGGCGAAGCTCAGGAGGCCCTGCGAGAACTGGCCAAACAGGTCCAGCGGGAGCGTGGGC
GGCGGTGGTGCCACAGGGAGGGTGGTGATGGCGTTGGCGTTGGTG
Right flanking sequence: Indices 14006 -- 14505
ATGGCATTGGTGGCATTGGCTGTGCTGGTGCTGGTGTTTGCACCTGCACTGGTACCGGCACTCGC
ACTGGTACCGGCACTCGCACTGGCACTGGCACTGGCACCTGTATTCGCATTCGCACTGGAACCGG
CACTCGCACTTGCGTTCGCACTCGCAATGGCACCTGTGTGTGCACTCACATCACTCCCATTACCT
GCCTGGCCCTCCTGGGCCGCCGTCAAGATCTTGCCCATGCTCTGCAAGAACGACATCCCCTTCTC
CAACTGCACCTTGTCGGCGCGATGGAGGTCGCGGATGATCTCCCGCAAGCTCAGCGCCTTCTGCA
AAAGATTCACCAGGTTGGCATCGGTGTTGACGTCGCGAAGCTTGTCAAAGTCGAGGTTCTCAAGC
GCCTCAAAGAGTTTGGGGTCCAACAACTTGTGGAACACCTTCTGCTCGTCGACCGAGAGCAGTGA
CGGTAGCGATGGGAGGCCCGTGGCGGTGGCGGTGGCGTTGGTGCG
Found at i:13974 original size:18 final size:18
Alignment explanation
Indices: 13951--14004 Score: 81
Period size: 18 Copynumber: 3.0 Consensus size: 18
13941 TGGCGTTGGT
13951 GTTGGTTGCATTGGTTGC
1 GTTGGTTGCATTGGTTGC
* *
13969 GTTGGTGGCAATGGTTGC
1 GTTGGTTGCATTGGTTGC
*
13987 GTTGGTTGCGTTGGTTGC
1 GTTGGTTGCATTGGTTGC
14005 AATGGCATTG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.06, C:0.11, G:0.43, T:0.41
Consensus pattern (18 bp):
GTTGGTTGCATTGGTTGC
Left flanking sequence: Indices 13451 -- 13950
AGAAACAACCGCCGGATCTCCTGCATCTTCTCTTCCTCCAGGATCTCCAGCTCGGTGTCGCTGAC
GGCGTCCTCCAGGAGCTCGCCCTCGGACTCCAGGAGCTCGTCGTCGGGGTGCGGGTGGCTGTGCG
GGTCGTCCCAGTGCCGCGGCTCGTGCTCCGGGTGCTGGCACTGGCTGTCGTGGTAGTGGCCGTCG
CGGTGGTCGTCGTCGTCGCCGCCGTCGTCCAGCTCGTCTGCGAGCTCGCGGGCGAGCTGCTCGGA
GAACATCTTCACCCGCGGGTCCACCGGGTGGCCGTCGTCGTCGGGCATCTTGAGGAGCTCCTCGC
GGGCCAGGCGCAGCTCCAGCAACAGCTCCATCATCTCGATGAACAGGTGGCCGTCGTTCTTGAGG
AGGTCCTCGGCGAAGCTCAGGAGGCCCTGCGAGAACTGGCCAAACAGGTCCAGCGGGAGCGTGGG
CGGCGGTGGTGCCACAGGGAGGGTGGTGATGGCGTTGGCGTTGGT
Right flanking sequence: Indices 14005 -- 14504
AATGGCATTGGTGGCATTGGCTGTGCTGGTGCTGGTGTTTGCACCTGCACTGGTACCGGCACTCG
CACTGGTACCGGCACTCGCACTGGCACTGGCACTGGCACCTGTATTCGCATTCGCACTGGAACCG
GCACTCGCACTTGCGTTCGCACTCGCAATGGCACCTGTGTGTGCACTCACATCACTCCCATTACC
TGCCTGGCCCTCCTGGGCCGCCGTCAAGATCTTGCCCATGCTCTGCAAGAACGACATCCCCTTCT
CCAACTGCACCTTGTCGGCGCGATGGAGGTCGCGGATGATCTCCCGCAAGCTCAGCGCCTTCTGC
AAAAGATTCACCAGGTTGGCATCGGTGTTGACGTCGCGAAGCTTGTCAAAGTCGAGGTTCTCAAG
CGCCTCAAAGAGTTTGGGGTCCAACAACTTGTGGAACACCTTCTGCTCGTCGACCGAGAGCAGTG
ACGGTAGCGATGGGAGGCCCGTGGCGGTGGCGGTGGCGTTGGTGC
Found at i:13991 original size:27 final size:27
Alignment explanation
Indices: 13953--14009 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
13943 GCGTTGGTGT
13953 TGGTTGCATTGGTTGCGTTGGTGGCAA
1 TGGTTGCATTGGTTGCGTTGGTGGCAA
* *
13980 TGGTTGCGTTGGTTGCGTTGGTTGCAA
1 TGGTTGCATTGGTTGCGTTGGTGGCAA
14007 TGG
1 TGG
14010 CATTGGTGGC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.09, C:0.11, G:0.42, T:0.39
Consensus pattern (27 bp):
TGGTTGCATTGGTTGCGTTGGTGGCAA
Left flanking sequence: Indices 13453 -- 13952
AAACAACCGCCGGATCTCCTGCATCTTCTCTTCCTCCAGGATCTCCAGCTCGGTGTCGCTGACGG
CGTCCTCCAGGAGCTCGCCCTCGGACTCCAGGAGCTCGTCGTCGGGGTGCGGGTGGCTGTGCGGG
TCGTCCCAGTGCCGCGGCTCGTGCTCCGGGTGCTGGCACTGGCTGTCGTGGTAGTGGCCGTCGCG
GTGGTCGTCGTCGTCGCCGCCGTCGTCCAGCTCGTCTGCGAGCTCGCGGGCGAGCTGCTCGGAGA
ACATCTTCACCCGCGGGTCCACCGGGTGGCCGTCGTCGTCGGGCATCTTGAGGAGCTCCTCGCGG
GCCAGGCGCAGCTCCAGCAACAGCTCCATCATCTCGATGAACAGGTGGCCGTCGTTCTTGAGGAG
GTCCTCGGCGAAGCTCAGGAGGCCCTGCGAGAACTGGCCAAACAGGTCCAGCGGGAGCGTGGGCG
GCGGTGGTGCCACAGGGAGGGTGGTGATGGCGTTGGCGTTGGTGT
Right flanking sequence: Indices 14010 -- 14509
CATTGGTGGCATTGGCTGTGCTGGTGCTGGTGTTTGCACCTGCACTGGTACCGGCACTCGCACTG
GTACCGGCACTCGCACTGGCACTGGCACTGGCACCTGTATTCGCATTCGCACTGGAACCGGCACT
CGCACTTGCGTTCGCACTCGCAATGGCACCTGTGTGTGCACTCACATCACTCCCATTACCTGCCT
GGCCCTCCTGGGCCGCCGTCAAGATCTTGCCCATGCTCTGCAAGAACGACATCCCCTTCTCCAAC
TGCACCTTGTCGGCGCGATGGAGGTCGCGGATGATCTCCCGCAAGCTCAGCGCCTTCTGCAAAAG
ATTCACCAGGTTGGCATCGGTGTTGACGTCGCGAAGCTTGTCAAAGTCGAGGTTCTCAAGCGCCT
CAAAGAGTTTGGGGTCCAACAACTTGTGGAACACCTTCTGCTCGTCGACCGAGAGCAGTGACGGT
AGCGATGGGAGGCCCGTGGCGGTGGCGGTGGCGTTGGTGCGGTTG
Found at i:14066 original size:18 final size:18
Alignment explanation
Indices: 14051--14145 Score: 104
Period size: 18 Copynumber: 5.3 Consensus size: 18
14041 GTTTGCACCT
14051 GCACTGGTACCGGCACTC
1 GCACTGGTACCGGCACTC
14069 GCACTGGTACCGGCACTC
1 GCACTGGTACCGGCACTC
* * *
14087 GCACTGGCACTGGCACTG
1 GCACTGGTACCGGCACTC
* *
14105 GCACCT-GTATTC-GCATTC
1 GCA-CTGGTA-CCGGCACTC
*
14123 GCACTGGAACCGGCACTC
1 GCACTGGTACCGGCACTC
14141 GCACT
1 GCACT
14146 TGCGTTCGCA
Statistics
Matches: 62, Mismatches: 11, Indels: 8
0.77 0.14 0.10
Matches are distributed among these distances:
17 3 0.05
18 57 0.92
19 2 0.03
ACGTcount: A:0.18, C:0.37, G:0.26, T:0.19
Consensus pattern (18 bp):
GCACTGGTACCGGCACTC
Left flanking sequence: Indices 13551 -- 14050
GCTCGTCGTCGGGGTGCGGGTGGCTGTGCGGGTCGTCCCAGTGCCGCGGCTCGTGCTCCGGGTGC
TGGCACTGGCTGTCGTGGTAGTGGCCGTCGCGGTGGTCGTCGTCGTCGCCGCCGTCGTCCAGCTC
GTCTGCGAGCTCGCGGGCGAGCTGCTCGGAGAACATCTTCACCCGCGGGTCCACCGGGTGGCCGT
CGTCGTCGGGCATCTTGAGGAGCTCCTCGCGGGCCAGGCGCAGCTCCAGCAACAGCTCCATCATC
TCGATGAACAGGTGGCCGTCGTTCTTGAGGAGGTCCTCGGCGAAGCTCAGGAGGCCCTGCGAGAA
CTGGCCAAACAGGTCCAGCGGGAGCGTGGGCGGCGGTGGTGCCACAGGGAGGGTGGTGATGGCGT
TGGCGTTGGTGTTGGTTGCATTGGTTGCGTTGGTGGCAATGGTTGCGTTGGTTGCGTTGGTTGCA
ATGGCATTGGTGGCATTGGCTGTGCTGGTGCTGGTGTTTGCACCT
Right flanking sequence: Indices 14146 -- 14645
TGCGTTCGCACTCGCAATGGCACCTGTGTGTGCACTCACATCACTCCCATTACCTGCCTGGCCCT
CCTGGGCCGCCGTCAAGATCTTGCCCATGCTCTGCAAGAACGACATCCCCTTCTCCAACTGCACC
TTGTCGGCGCGATGGAGGTCGCGGATGATCTCCCGCAAGCTCAGCGCCTTCTGCAAAAGATTCAC
CAGGTTGGCATCGGTGTTGACGTCGCGAAGCTTGTCAAAGTCGAGGTTCTCAAGCGCCTCAAAGA
GTTTGGGGTCCAACAACTTGTGGAACACCTTCTGCTCGTCGACCGAGAGCAGTGACGGTAGCGAT
GGGAGGCCCGTGGCGGTGGCGGTGGCGTTGGTGCGGTTGGCAATGGCCCCGTGCGCCATGGGCGC
GCTGTGTGCGTGGGCACCGGCACTGTGCGCCGCGGCACCGGCACCGGCACTGGGCGCACCCGGGT
GGTGTGCACTGGCACCCACCCGCGGCGGACTGCGCCGCGCCTGGC
Found at i:14084 original size:12 final size:12
Alignment explanation
Indices: 14045--14109 Score: 51
Period size: 12 Copynumber: 5.4 Consensus size: 12
14035 GCTGGTGTTT
*
14045 GCACCTGCACTG
1 GCACCGGCACTG
* *
14057 GTACCGGCACTC
1 GCACCGGCACTG
* * *
14069 GCACTGGTACCG
1 GCACCGGCACTG
14081 GCACTC-GCACTG
1 GCAC-CGGCACTG
*
14093 GCACTGGCACTG
1 GCACCGGCACTG
14105 GCACC
1 GCACC
14110 TGTATTCGCA
Statistics
Matches: 38, Mismatches: 13, Indels: 4
0.69 0.24 0.07
Matches are distributed among these distances:
12 38 1.00
ACGTcount: A:0.17, C:0.40, G:0.28, T:0.15
Consensus pattern (12 bp):
GCACCGGCACTG
Left flanking sequence: Indices 13545 -- 14044
CCAGGAGCTCGTCGTCGGGGTGCGGGTGGCTGTGCGGGTCGTCCCAGTGCCGCGGCTCGTGCTCC
GGGTGCTGGCACTGGCTGTCGTGGTAGTGGCCGTCGCGGTGGTCGTCGTCGTCGCCGCCGTCGTC
CAGCTCGTCTGCGAGCTCGCGGGCGAGCTGCTCGGAGAACATCTTCACCCGCGGGTCCACCGGGT
GGCCGTCGTCGTCGGGCATCTTGAGGAGCTCCTCGCGGGCCAGGCGCAGCTCCAGCAACAGCTCC
ATCATCTCGATGAACAGGTGGCCGTCGTTCTTGAGGAGGTCCTCGGCGAAGCTCAGGAGGCCCTG
CGAGAACTGGCCAAACAGGTCCAGCGGGAGCGTGGGCGGCGGTGGTGCCACAGGGAGGGTGGTGA
TGGCGTTGGCGTTGGTGTTGGTTGCATTGGTTGCGTTGGTGGCAATGGTTGCGTTGGTTGCGTTG
GTTGCAATGGCATTGGTGGCATTGGCTGTGCTGGTGCTGGTGTTT
Right flanking sequence: Indices 14110 -- 14609
TGTATTCGCATTCGCACTGGAACCGGCACTCGCACTTGCGTTCGCACTCGCAATGGCACCTGTGT
GTGCACTCACATCACTCCCATTACCTGCCTGGCCCTCCTGGGCCGCCGTCAAGATCTTGCCCATG
CTCTGCAAGAACGACATCCCCTTCTCCAACTGCACCTTGTCGGCGCGATGGAGGTCGCGGATGAT
CTCCCGCAAGCTCAGCGCCTTCTGCAAAAGATTCACCAGGTTGGCATCGGTGTTGACGTCGCGAA
GCTTGTCAAAGTCGAGGTTCTCAAGCGCCTCAAAGAGTTTGGGGTCCAACAACTTGTGGAACACC
TTCTGCTCGTCGACCGAGAGCAGTGACGGTAGCGATGGGAGGCCCGTGGCGGTGGCGGTGGCGTT
GGTGCGGTTGGCAATGGCCCCGTGCGCCATGGGCGCGCTGTGTGCGTGGGCACCGGCACTGTGCG
CCGCGGCACCGGCACCGGCACTGGGCGCACCCGGGTGGTGTGCAC
Found at i:14090 original size:24 final size:24
Alignment explanation
Indices: 14063--14145 Score: 67
Period size: 24 Copynumber: 3.2 Consensus size: 24
14053 ACTGGTACCG
*
14063 GCACTCGCACTGGTACCGGCACTC
1 GCACTCGCACTGGAACCGGCACTC
* * *
14087 GCACTGGCACTGGCACTGGCACCTGTATTC
1 GCACTCGCACTGGAACCGGCA-C-----TC
*
14117 GCATTCGCACTGGAACCGGCACTC
1 GCACTCGCACTGGAACCGGCACTC
14141 GCACT
1 GCACT
14146 TGCGTTCGCA
Statistics
Matches: 45, Mismatches: 8, Indels: 12
0.69 0.12 0.18
Matches are distributed among these distances:
24 24 0.53
25 1 0.02
29 1 0.02
30 19 0.42
ACGTcount: A:0.18, C:0.37, G:0.25, T:0.19
Consensus pattern (24 bp):
GCACTCGCACTGGAACCGGCACTC
Left flanking sequence: Indices 13563 -- 14062
GGTGCGGGTGGCTGTGCGGGTCGTCCCAGTGCCGCGGCTCGTGCTCCGGGTGCTGGCACTGGCTG
TCGTGGTAGTGGCCGTCGCGGTGGTCGTCGTCGTCGCCGCCGTCGTCCAGCTCGTCTGCGAGCTC
GCGGGCGAGCTGCTCGGAGAACATCTTCACCCGCGGGTCCACCGGGTGGCCGTCGTCGTCGGGCA
TCTTGAGGAGCTCCTCGCGGGCCAGGCGCAGCTCCAGCAACAGCTCCATCATCTCGATGAACAGG
TGGCCGTCGTTCTTGAGGAGGTCCTCGGCGAAGCTCAGGAGGCCCTGCGAGAACTGGCCAAACAG
GTCCAGCGGGAGCGTGGGCGGCGGTGGTGCCACAGGGAGGGTGGTGATGGCGTTGGCGTTGGTGT
TGGTTGCATTGGTTGCGTTGGTGGCAATGGTTGCGTTGGTTGCGTTGGTTGCAATGGCATTGGTG
GCATTGGCTGTGCTGGTGCTGGTGTTTGCACCTGCACTGGTACCG
Right flanking sequence: Indices 14146 -- 14645
TGCGTTCGCACTCGCAATGGCACCTGTGTGTGCACTCACATCACTCCCATTACCTGCCTGGCCCT
CCTGGGCCGCCGTCAAGATCTTGCCCATGCTCTGCAAGAACGACATCCCCTTCTCCAACTGCACC
TTGTCGGCGCGATGGAGGTCGCGGATGATCTCCCGCAAGCTCAGCGCCTTCTGCAAAAGATTCAC
CAGGTTGGCATCGGTGTTGACGTCGCGAAGCTTGTCAAAGTCGAGGTTCTCAAGCGCCTCAAAGA
GTTTGGGGTCCAACAACTTGTGGAACACCTTCTGCTCGTCGACCGAGAGCAGTGACGGTAGCGAT
GGGAGGCCCGTGGCGGTGGCGGTGGCGTTGGTGCGGTTGGCAATGGCCCCGTGCGCCATGGGCGC
GCTGTGTGCGTGGGCACCGGCACTGTGCGCCGCGGCACCGGCACCGGCACTGGGCGCACCCGGGT
GGTGTGCACTGGCACCCACCCGCGGCGGACTGCGCCGCGCCTGGC
Found at i:14127 original size:30 final size:30
Alignment explanation
Indices: 14093--14172 Score: 74
Period size: 30 Copynumber: 2.7 Consensus size: 30
14083 ACTCGCACTG
14093 GCACTGGCACTGGCACCTGTA-TTCGCATTC
1 GCACTGGCACTGGCACCTGTACTT-GCATTC
* * * *
14123 GCACTGGAACCGGCA-CTCGCACTTGCGTTC
1 GCACTGGCACTGGCACCT-GTACTTGCATTC
* *
14153 GCACTCGCAATGGCACCTGT
1 GCACTGGCACTGGCACCTGT
14173 GTGTGCACTC
Statistics
Matches: 38, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
29 2 0.05
30 32 0.84
31 4 0.11
ACGTcount: A:0.17, C:0.35, G:0.25, T:0.23
Consensus pattern (30 bp):
GCACTGGCACTGGCACCTGTACTTGCATTC
Left flanking sequence: Indices 13593 -- 14092
GCCGCGGCTCGTGCTCCGGGTGCTGGCACTGGCTGTCGTGGTAGTGGCCGTCGCGGTGGTCGTCG
TCGTCGCCGCCGTCGTCCAGCTCGTCTGCGAGCTCGCGGGCGAGCTGCTCGGAGAACATCTTCAC
CCGCGGGTCCACCGGGTGGCCGTCGTCGTCGGGCATCTTGAGGAGCTCCTCGCGGGCCAGGCGCA
GCTCCAGCAACAGCTCCATCATCTCGATGAACAGGTGGCCGTCGTTCTTGAGGAGGTCCTCGGCG
AAGCTCAGGAGGCCCTGCGAGAACTGGCCAAACAGGTCCAGCGGGAGCGTGGGCGGCGGTGGTGC
CACAGGGAGGGTGGTGATGGCGTTGGCGTTGGTGTTGGTTGCATTGGTTGCGTTGGTGGCAATGG
TTGCGTTGGTTGCGTTGGTTGCAATGGCATTGGTGGCATTGGCTGTGCTGGTGCTGGTGTTTGCA
CCTGCACTGGTACCGGCACTCGCACTGGTACCGGCACTCGCACTG
Right flanking sequence: Indices 14173 -- 14672
GTGTGCACTCACATCACTCCCATTACCTGCCTGGCCCTCCTGGGCCGCCGTCAAGATCTTGCCCA
TGCTCTGCAAGAACGACATCCCCTTCTCCAACTGCACCTTGTCGGCGCGATGGAGGTCGCGGATG
ATCTCCCGCAAGCTCAGCGCCTTCTGCAAAAGATTCACCAGGTTGGCATCGGTGTTGACGTCGCG
AAGCTTGTCAAAGTCGAGGTTCTCAAGCGCCTCAAAGAGTTTGGGGTCCAACAACTTGTGGAACA
CCTTCTGCTCGTCGACCGAGAGCAGTGACGGTAGCGATGGGAGGCCCGTGGCGGTGGCGGTGGCG
TTGGTGCGGTTGGCAATGGCCCCGTGCGCCATGGGCGCGCTGTGTGCGTGGGCACCGGCACTGTG
CGCCGCGGCACCGGCACCGGCACTGGGCGCACCCGGGTGGTGTGCACTGGCACCCACCCGCGGCG
GACTGCGCCGCGCCTGGCGCTTCTGTAGCTTGTGCTCCTCCTCCA
Found at i:14154 original size:36 final size:34
Alignment explanation
Indices: 14051--14161 Score: 105
Period size: 36 Copynumber: 3.1 Consensus size: 34
14041 GTTTGCACCT
* *
14051 GCACTGGTACCGGCACTCGCACTGGTACCGGCACTC
1 GCACTGGAACCGGCACTCGCACTGGT-TC-GCACTC
* * * * *
14087 GCACTGGCACTGGCACTGGCACCTGTATTCGCATTC
1 GCACTGGAACCGGCACTCGCA-CTG-GTTCGCACTC
14123 GCACTGGAACCGGCACTCGCACTTGCGTTCGCACTC
1 GCACTGGAACCGGCACTCGCAC-TG-GTTCGCACTC
14159 GCA
1 GCA
14162 ATGGCACCTG
Statistics
Matches: 60, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
35 1 0.02
36 54 0.90
37 4 0.07
38 1 0.02
ACGTcount: A:0.17, C:0.37, G:0.26, T:0.20
Consensus pattern (34 bp):
GCACTGGAACCGGCACTCGCACTGGTTCGCACTC
Left flanking sequence: Indices 13551 -- 14050
GCTCGTCGTCGGGGTGCGGGTGGCTGTGCGGGTCGTCCCAGTGCCGCGGCTCGTGCTCCGGGTGC
TGGCACTGGCTGTCGTGGTAGTGGCCGTCGCGGTGGTCGTCGTCGTCGCCGCCGTCGTCCAGCTC
GTCTGCGAGCTCGCGGGCGAGCTGCTCGGAGAACATCTTCACCCGCGGGTCCACCGGGTGGCCGT
CGTCGTCGGGCATCTTGAGGAGCTCCTCGCGGGCCAGGCGCAGCTCCAGCAACAGCTCCATCATC
TCGATGAACAGGTGGCCGTCGTTCTTGAGGAGGTCCTCGGCGAAGCTCAGGAGGCCCTGCGAGAA
CTGGCCAAACAGGTCCAGCGGGAGCGTGGGCGGCGGTGGTGCCACAGGGAGGGTGGTGATGGCGT
TGGCGTTGGTGTTGGTTGCATTGGTTGCGTTGGTGGCAATGGTTGCGTTGGTTGCGTTGGTTGCA
ATGGCATTGGTGGCATTGGCTGTGCTGGTGCTGGTGTTTGCACCT
Right flanking sequence: Indices 14162 -- 14661
ATGGCACCTGTGTGTGCACTCACATCACTCCCATTACCTGCCTGGCCCTCCTGGGCCGCCGTCAA
GATCTTGCCCATGCTCTGCAAGAACGACATCCCCTTCTCCAACTGCACCTTGTCGGCGCGATGGA
GGTCGCGGATGATCTCCCGCAAGCTCAGCGCCTTCTGCAAAAGATTCACCAGGTTGGCATCGGTG
TTGACGTCGCGAAGCTTGTCAAAGTCGAGGTTCTCAAGCGCCTCAAAGAGTTTGGGGTCCAACAA
CTTGTGGAACACCTTCTGCTCGTCGACCGAGAGCAGTGACGGTAGCGATGGGAGGCCCGTGGCGG
TGGCGGTGGCGTTGGTGCGGTTGGCAATGGCCCCGTGCGCCATGGGCGCGCTGTGTGCGTGGGCA
CCGGCACTGTGCGCCGCGGCACCGGCACCGGCACTGGGCGCACCCGGGTGGTGTGCACTGGCACC
CACCCGCGGCGGACTGCGCCGCGCCTGGCGCTTCTGTAGCTTGTG
Found at i:14872 original size:15 final size:15
Alignment explanation
Indices: 14854--14883 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
14844 CGTAGTGCGG
14854 GTGGGTGCTGTGCCC
1 GTGGGTGCTGTGCCC
14869 GTGGGTGCTGTGCCC
1 GTGGGTGCTGTGCCC
14884 ATGCGCCGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.00, C:0.27, G:0.47, T:0.27
Consensus pattern (15 bp):
GTGGGTGCTGTGCCC
Left flanking sequence: Indices 14354 -- 14853
GTGTTGACGTCGCGAAGCTTGTCAAAGTCGAGGTTCTCAAGCGCCTCAAAGAGTTTGGGGTCCAA
CAACTTGTGGAACACCTTCTGCTCGTCGACCGAGAGCAGTGACGGTAGCGATGGGAGGCCCGTGG
CGGTGGCGGTGGCGTTGGTGCGGTTGGCAATGGCCCCGTGCGCCATGGGCGCGCTGTGTGCGTGG
GCACCGGCACTGTGCGCCGCGGCACCGGCACCGGCACTGGGCGCACCCGGGTGGTGTGCACTGGC
ACCCACCCGCGGCGGACTGCGCCGCGCCTGGCGCTTCTGTAGCTTGTGCTCCTCCTCCAACATGT
GGAACCCGCCAAACAACAACCCGGGCAACGCGTTCAAGTCGTTGATGTCACGCACCTCGTGGATA
AAGTCGATGATGTCGTCAAAGTGGTTCTCGTAGATCAGATCCAACTCGTCCTCGATGACGTTGTT
GCGGCGCCCGCAGTACTTGCAGGTGCACCCGCCCCCGTAGTGCGG
Right flanking sequence: Indices 14884 -- 15383
ATGCGCCGGGTGCCCGTGGGCGTCGCGGTCGCGCGACTCGCGCCGGAACAACTCCATGATCAGTT
TCTTGTCGATCTTGACCAACTCCATCTTGTGCTGCTGGTCCAACAGCTCCCAGAACGCCTTCAAG
TTCTCCTGCTCCTGGGCCAGCTCGCGGTCCCACAACCGCTCCGGGCGCCGGGGCTCGTCGTCCAA
CAGCTCGACAATGACGTCGCCGTTGGCCGCCTGCTTGATCACCCGCAGCTGGGGGTAGTCGTCGT
CGGGGCGGTGCAAGTGCGCCTCGGGGGCCCGCTTGGTGCGCTTCTTTTTCTTCTTGGCGCCGGCG
GGGGGCGGCGGTGGGGGGGCAGGCACCGCGTCCAGGTACTCGAAATGGACGTCGGCCCCGTTCTT
ATACAGCGCTCGATCACTCATGCGCCTGGTGGGGGTGTGGATGGGGGTCGGGTCTGGTGGTGGAG
GTGCTAATGGCAGGACAAAAAAAATGAAGCAAGGGCGCGTGCACA
Found at i:15461 original size:23 final size:25
Alignment explanation
Indices: 15425--15487 Score: 73
Period size: 23 Copynumber: 2.7 Consensus size: 25
15415 ATGGCGGCCT
*
15425 GGTGGTAG-GTAGGGTGG-TGGCTA-
1 GGTGGTAGAG-AGGGTGGTTGGCGAG
15448 GGTGGTAGAGAGGG-GGTTGGCGAG
1 GGTGGTAGAGAGGGTGGTTGGCGAG
15472 GGTGGTAGAG-GGGTGG
1 GGTGGTAGAGAGGGTGG
15488 GTGTTACGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
22 2 0.06
23 20 0.57
24 13 0.37
ACGTcount: A:0.14, C:0.03, G:0.62, T:0.21
Consensus pattern (25 bp):
GGTGGTAGAGAGGGTGGTTGGCGAG
Left flanking sequence: Indices 14925 -- 15424
GCCGGAACAACTCCATGATCAGTTTCTTGTCGATCTTGACCAACTCCATCTTGTGCTGCTGGTCC
AACAGCTCCCAGAACGCCTTCAAGTTCTCCTGCTCCTGGGCCAGCTCGCGGTCCCACAACCGCTC
CGGGCGCCGGGGCTCGTCGTCCAACAGCTCGACAATGACGTCGCCGTTGGCCGCCTGCTTGATCA
CCCGCAGCTGGGGGTAGTCGTCGTCGGGGCGGTGCAAGTGCGCCTCGGGGGCCCGCTTGGTGCGC
TTCTTTTTCTTCTTGGCGCCGGCGGGGGGCGGCGGTGGGGGGGCAGGCACCGCGTCCAGGTACTC
GAAATGGACGTCGGCCCCGTTCTTATACAGCGCTCGATCACTCATGCGCCTGGTGGGGGTGTGGA
TGGGGGTCGGGTCTGGTGGTGGAGGTGCTAATGGCAGGACAAAAAAAATGAAGCAAGGGCGCGTG
CACACGAGCCCGGTGCAGTGGTGAGAGGGGCGTAGATGGCGGCCT
Right flanking sequence: Indices 15488 -- 15987
GTGTTACGTTGGTGGGGTGGTGGGTGTGGGTGTGGTGAGTGTGCTGGAGGTGTGGGTGGGTGCGA
GAATTGACGGGTGTGGTCTCAGATCGGGTTTCGGTGCGACCTCCAGTGACGTACCAAGCGATCTT
TTTTCCGGAGACAGTAATCCCCGCAATGGGAAGTGGGAGAGACGGTGTGGCTACGGGGCCGTGGG
GGCTTACGCGGTGGTGGGTGGGGCAATTGGTGTGGTTTGGTGGGATCTGGTGGTGTTTGTGTGTG
TGGGGTGAAGAGGTGTTTAGAGGTGTAGAGGTGTAGAGTGCGGGTAGTTTTTTAGTGTGGTGACA
GTATAACCACGGAGGTAGGTGGTGTGGTGGGCACAGGGGTAGTGGGATCGGGCAGGTGCGTAGTG
GGATCGGGTATAGTGGTTGTTGGGTGCATAGACCGCGGCTGTTTTGATTGTGGAGGGGCTTAGAT
CCGGTGATGGTTGTCACTGTTTCAGGGGTCACCTGTGGAATGTGT
Found at i:18575 original size:14 final size:14
Alignment explanation
Indices: 18556--18646 Score: 137
Period size: 14 Copynumber: 6.4 Consensus size: 14
18546 AAGATTCAAG
*
18556 ACTCGAACATTTAC
1 ACTCGAAGATTTAC
18570 ACTCGAAGATTTTAC
1 ACTCGAAGA-TTTAC
18585 ACTCGAAGATTTAC
1 ACTCGAAGATTTAC
*
18599 ACTCAAAGATTTAC
1 ACTCGAAGATTTAC
*
18613 ACTCGAAGGTTTAC
1 ACTCGAAGATTTAC
*
18627 ACTCGACGATTTAC
1 ACTCGAAGATTTAC
18641 ACTCGA
1 ACTCGA
18647 GGCTACCATG
Statistics
Matches: 70, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
14 56 0.80
15 14 0.20
ACGTcount: A:0.34, C:0.24, G:0.13, T:0.29
Consensus pattern (14 bp):
ACTCGAAGATTTAC
Left flanking sequence: Indices 18056 -- 18555
GTAAATGATCCAGGCGTCGTAGCTGCTATTGTTTAGCGTCTAAAAGTTGCTCATAACCTGGACCC
GGTAAGCCGAAATTGGCACTTGGTGCTAACAATAGCACAATCCATGTGAATGGGGAGTGTGTTAC
ACGCCCCTGGCTTGTTGAGTGTTGTCCGGTGGGCCCTGTGGGCTCTCGGGGCCTGGAACCAGCCA
AAACTGCTGGTGGTCCGATTAGATGCGAGATCGGCTAAACCGTGGATAGACTGCCTAGACTGGCA
ACACAGGCAGAAACAAGGTTTTAGCGCCAGCGAAGGTGCCTAAAGTTCCGGTTAAAACTGCCCGG
GCCCGGTAAAGGGGTTGGAAGGGGGAAGACGCCACGTCAAGGCCAAGAAATTGCCGCAAACAGCA
GCTGTCGTCATTCATCAGGGCCTTGTCTCTAACTGGCTCAATACCCACCCTACTATGGGGAATTT
ATCACTGGAAAATTAATACTCAAAATTAATACCCGAAGATTCAAG
Right flanking sequence: Indices 18647 -- 19146
GGCTACCATGCCTTACTACGCTTTTATTCAGTCCTTCTTCGTTTTATTGAGTCCTTCTTCGCGTT
ATTCAGTCCTTCTTCGCGTTATTCAGTCCTCTTCGCATTATTCAGTCCTTCTTCTGGTCCTTCTT
GTCCTTGTCCTCCACCAACTGCTCCACCAACTTCGTCAACTTGTCGACCCGCTCGTAGAGCCCGT
ACATGTCCCACGGCACCCCCTTCTGGCTTGCCTCGTGCACAGGCTGCACCACCTCGTCGATCTCC
TGGCGGAACTTCTCCAAATCGATGGAAAACTCGGGGTCCTGGCGTTCGCCTTCCCGCTGCAGCTC
CAACGCAAGGGCCACTTCCTCGTTCCGCTCACGGATCCCGTCCCAAGCCAGGCCACCGGACACGT
CGTACCCGTCCACAAGGTCCCACTGGCAGTCCAACTCGTTGGCATCGTCGGGCAACCGCTTGTAG
CGGTTGTACTGGATGCGACGAGCGTTGCCAAGCTCGTACCAGGTG
Found at i:18693 original size:20 final size:20
Alignment explanation
Indices: 18670--18765 Score: 149
Period size: 20 Copynumber: 4.8 Consensus size: 20
18660 TACTACGCTT
**
18670 TTATTCAGTCCTTCTTCGTT
1 TTATTCAGTCCTTCTTCGCG
*
18690 TTATTGAGTCCTTCTTCGCG
1 TTATTCAGTCCTTCTTCGCG
18710 TTATTCAGTCCTTCTTCGCG
1 TTATTCAGTCCTTCTTCGCG
*
18730 TTATTCAGTCC-TCTTCGCA
1 TTATTCAGTCCTTCTTCGCG
18749 TTATTCAGTCCTTCTTC
1 TTATTCAGTCCTTCTTC
18766 TGGTCCTTCT
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
19 18 0.26
20 52 0.74
ACGTcount: A:0.11, C:0.28, G:0.12, T:0.48
Consensus pattern (20 bp):
TTATTCAGTCCTTCTTCGCG
Left flanking sequence: Indices 18170 -- 18669
ATGGGGAGTGTGTTACACGCCCCTGGCTTGTTGAGTGTTGTCCGGTGGGCCCTGTGGGCTCTCGG
GGCCTGGAACCAGCCAAAACTGCTGGTGGTCCGATTAGATGCGAGATCGGCTAAACCGTGGATAG
ACTGCCTAGACTGGCAACACAGGCAGAAACAAGGTTTTAGCGCCAGCGAAGGTGCCTAAAGTTCC
GGTTAAAACTGCCCGGGCCCGGTAAAGGGGTTGGAAGGGGGAAGACGCCACGTCAAGGCCAAGAA
ATTGCCGCAAACAGCAGCTGTCGTCATTCATCAGGGCCTTGTCTCTAACTGGCTCAATACCCACC
CTACTATGGGGAATTTATCACTGGAAAATTAATACTCAAAATTAATACCCGAAGATTCAAGACTC
GAACATTTACACTCGAAGATTTTACACTCGAAGATTTACACTCAAAGATTTACACTCGAAGGTTT
ACACTCGACGATTTACACTCGAGGCTACCATGCCTTACTACGCTT
Right flanking sequence: Indices 18766 -- 19265
TGGTCCTTCTTGTCCTTGTCCTCCACCAACTGCTCCACCAACTTCGTCAACTTGTCGACCCGCTC
GTAGAGCCCGTACATGTCCCACGGCACCCCCTTCTGGCTTGCCTCGTGCACAGGCTGCACCACCT
CGTCGATCTCCTGGCGGAACTTCTCCAAATCGATGGAAAACTCGGGGTCCTGGCGTTCGCCTTCC
CGCTGCAGCTCCAACGCAAGGGCCACTTCCTCGTTCCGCTCACGGATCCCGTCCCAAGCCAGGCC
ACCGGACACGTCGTACCCGTCCACAAGGTCCCACTGGCAGTCCAACTCGTTGGCATCGTCGGGCA
ACCGCTTGTAGCGGTTGTACTGGATGCGACGAGCGTTGCCAAGCTCGTACCAGGTGACAAACACC
AACATGGGAGCGTACAACACGATCATAAGCACCCGGTTGATCAGCTTGTAGGTGGAATGCGAGGT
GACAAAGGCGATGGGCGAAATGACCACCTCCACGAGGTTCAACGG
Found at i:21176 original size:20 final size:20
Alignment explanation
Indices: 21151--21190 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
21141 GGGTGGTATG
21151 TTAAGGGTTGGACAAAACTT
1 TTAAGGGTTGGACAAAACTT
21171 TTAAGGGTTGGACAAAACTT
1 TTAAGGGTTGGACAAAACTT
21191 GACGGTCGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.30
Consensus pattern (20 bp):
TTAAGGGTTGGACAAAACTT
Left flanking sequence: Indices 20651 -- 21150
AGGTGCCCGTGAACTGGTGGGGAGCACCCACCTCCAGCAGCTCGACGTCCAGGGCCATGAATTGC
GCCAGGGTGGTCATCTTCCAGATGGTTGCTGTCGCCAATGGCTCGGATAGGAAGAATAGCTGGGT
CTCGGGGTGCGCGCACGGTGCGTGGTCGGTGCGTCGCAGGTGCGCGTCATGCAGGGAGGCACGGC
GATGAGAATGTAGAGGGACAGGAGAAGAGAAGGAGAAGAGAGGGAAAAGAGAGGGGGATTGTGAG
AGATGTGGATGGTTTGGTGGTACAGAGTGTGGTTCAGAGTGGTGTTATCGTGATTAGGTGTTGAT
CATTGCTTCCGCAGTTTCGTTTCTGGGTCTATGGGCTAGATTGCGTGGAGAAGCTCCTCAGCGGG
GTACCTGAAACGAGGCTAAGCCTTCCACACGTAGTTGACAGGAGACGGGTCGGAGAAGCGATCTC
TGGCCTGGTATTGAACGATTGTAGCGCTGGAGACAGGGTGGTATG
Right flanking sequence: Indices 21191 -- 21690
GACGGTCGAAGGTTCTTGGTAGGGACTGAGGAGAGACCGACGAAAGTCGGTAAGATCGCAAAACT
GGGTCGAATTTCGACTTGGTCGGAGACGAACCAGTACGCCCATCAACGCTCCCATGACAACCGTT
ACGACTCGTAATTATTCGACCCCCTACCGTCAAGACACCGTTATCCTGTGATTGTAGTGGCAGTG
ACTGAACCACTCGGAGTCTGTTGCGAAGACAACGATTTACGAGAATAAGGCGATAATTGCGGTTC
TGTGTCAGGAACACACCCAGAGTGGTGAGATCTCACAGGGGTTTGCTCCTTGCTCCGTGGTAGTT
CCCGAGTCTGTCTGAAGCCACACGAAGGAGGTAGCCAAGAAATCCACCGGCTCCGCGACCATTGT
CTGTCTACGCCAATGTCACGGTGGCCAAGCACCACAACTATAGCCGTAAACACCGTCGACGCGCT
CATTGTCACTTACGCGTCCGCCAGACACGAACTAAGTGTCCAGCA
Found at i:21728 original size:18 final size:18
Alignment explanation
Indices: 21681--21767 Score: 133
Period size: 18 Copynumber: 4.9 Consensus size: 18
21671 CACGAACTAA
21681 GTGTCCAGCATTGTAC-C
1 GTGTCCAGCATTGTACTC
21698 GTGT-CAGCATTGTACTC
1 GTGTCCAGCATTGTACTC
*
21715 GTGTCCAGCGTTGTACTC
1 GTGTCCAGCATTGTACTC
* *
21733 GTGTCCAGCGTTGTACCC
1 GTGTCCAGCATTGTACTC
21751 GTGTCCAGCATTGTACT
1 GTGTCCAGCATTGTACT
21768 GCTTGTTGAC
Statistics
Matches: 64, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
16 11 0.17
17 9 0.14
18 44 0.69
ACGTcount: A:0.15, C:0.28, G:0.25, T:0.32
Consensus pattern (18 bp):
GTGTCCAGCATTGTACTC
Left flanking sequence: Indices 21181 -- 21680
GACAAAACTTGACGGTCGAAGGTTCTTGGTAGGGACTGAGGAGAGACCGACGAAAGTCGGTAAGA
TCGCAAAACTGGGTCGAATTTCGACTTGGTCGGAGACGAACCAGTACGCCCATCAACGCTCCCAT
GACAACCGTTACGACTCGTAATTATTCGACCCCCTACCGTCAAGACACCGTTATCCTGTGATTGT
AGTGGCAGTGACTGAACCACTCGGAGTCTGTTGCGAAGACAACGATTTACGAGAATAAGGCGATA
ATTGCGGTTCTGTGTCAGGAACACACCCAGAGTGGTGAGATCTCACAGGGGTTTGCTCCTTGCTC
CGTGGTAGTTCCCGAGTCTGTCTGAAGCCACACGAAGGAGGTAGCCAAGAAATCCACCGGCTCCG
CGACCATTGTCTGTCTACGCCAATGTCACGGTGGCCAAGCACCACAACTATAGCCGTAAACACCG
TCGACGCGCTCATTGTCACTTACGCGTCCGCCAGACACGAACTAA
Right flanking sequence: Indices 21768 -- 22267
GCTTGTTGACCAGCCACGCGTGAGAGGCTACCGCATCCGGCAGTTAGACATCATCACAGGCACGT
CGTATTTGCTTCTGTTCTCGTCGAAAGTTTTTGTATTACGTCAGCATCGGTTACGCTGGTTCCCC
TCAACACCGACGCCATTGGTCAGGCGCACCCGACGGGAGCGGTACCCCAGTTCCTCAAACGGGGA
TCGTGCGGGCTGTGATGACGTCCTTCTGTGCTATTGTTCTATTGTTGGCTTTCGACACAAGGCGG
GATCCGGTCCTATTCGAGGCAGCCCGCGTGCTTTTTTAGTCATCGGGCTAGCGTAGGCACCCCTG
AGCCTCTCGGTCGGCGCTCCTGCCGTCGCTGTGACGTGAATGTCCACGCTGGGCAGGCACGCCGT
AACACGTTGGCCAAGGACTGGAGTGATCCGGTTGGGGGCGGGATCGCGCCACCGGTGGCGTGGCC
AAACAAGCTCTGACACAATCTAGAGATACGAGTGGGCAACCCTGG
Found at i:22982 original size:10 final size:10
Alignment explanation
Indices: 22967--23003 Score: 74
Period size: 10 Copynumber: 3.7 Consensus size: 10
22957 CCCAAAGCCG
22967 TACCAAACAC
1 TACCAAACAC
22977 TACCAAACAC
1 TACCAAACAC
22987 TACCAAACAC
1 TACCAAACAC
22997 TACCAAA
1 TACCAAA
23004 GAACTATACT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.51, C:0.38, G:0.00, T:0.11
Consensus pattern (10 bp):
TACCAAACAC
Left flanking sequence: Indices 22467 -- 22966
CGGCCCAATCGGGAAATAAATCGTGCAGCCCCGTTTGTGTCATCATCGCGGTAGCACACCGTTTG
GGACGGGCGTGCTCTAAGTTGGGCCACCCCAGGTTTTAGTGGCGCCTGCTTCGGGGTGGCACGAC
GGCTCCGTCGGGTTTCACACGAGGAAACCCGTCGCAACCTCGAGGTGAAAAATATCCCCGCAGGA
ACGCCCAACGGCTGCAAAATGACGTGATGGTGATGGAGCATGAATGGCGAAGAACAAGGTGACGG
GATGACGTACAGAAGTGCTTGTGTGTGTATTGCGGTGCTGGATGCGTTCCCGTGGCGTTCTGGCT
CCGATTAGACGCGTTGTACCGGTGATTCCACCACGTTGCGATCGTCATGGCACCTGCGTTTCATC
TGGCCCGCGGGCAGTAGCCCTGGCGGTGCCTGGAACCCAGAAACGCAGCAGCACCAGGTAACAGA
AGCCGTGCTACAGGAACGAAAGCACGGTTACACAGCCCAAAGCCG
Right flanking sequence: Indices 23004 -- 23503
GAACTATACTAAAGACCACAGACTCCACAGACTCCCCATTCAACCGCCCATCACCTTATCACCTC
TTCTTCATCTCCTCCTTCTCATCCCTTCTCATCTCAAACCCAGTATAGGACGACTTTTCTCCACT
CCTGAAACTACCCCTGAATTCTTCCACCGACCCGAATAGCCCACTAACAGAAACTAACCCGCGTC
TAACCCGCCACTAACCCACGACTAACTACTAATCCATTACTAAACCACTACGCTTCCACTACTGC
ACCCACAACCGCTCACTACACTTCACTCTATCCCCTTACCCATCTCCCTTCACTCATCTACCCTT
ACTCATCACTACGTACCATAAAACCTACACACCAAAAAGTAACCACCACCACACACCACCACCAC
TACCACAGCACTCCCCGCCGCCGGCTACAGTTGCCGTGCTGCCCCCGTCCGCCTTGTGCCGTCCA
AGCAACCGGTCGCGTCCGTGGCGGGCCCGCTGCATAGCGCGATAA
Found at i:23085 original size:25 final size:24
Alignment explanation
Indices: 23057--23103 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 24
23047 CCGCCCATCA
23057 CCTTATCA-CCTCTTCTTCATCTCCT
1 CCTTATCATCC-CTTC-TCATCTCCT
*
23082 CCTTCTCATCCCTTCTCATCTC
1 CCTTATCATCCCTTCTCATCTC
23104 AAACCCAGTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 7 0.35
25 11 0.55
26 2 0.10
ACGTcount: A:0.11, C:0.47, G:0.00, T:0.43
Consensus pattern (24 bp):
CCTTATCATCCCTTCTCATCTCCT
Left flanking sequence: Indices 22557 -- 23056
ACCCCAGGTTTTAGTGGCGCCTGCTTCGGGGTGGCACGACGGCTCCGTCGGGTTTCACACGAGGA
AACCCGTCGCAACCTCGAGGTGAAAAATATCCCCGCAGGAACGCCCAACGGCTGCAAAATGACGT
GATGGTGATGGAGCATGAATGGCGAAGAACAAGGTGACGGGATGACGTACAGAAGTGCTTGTGTG
TGTATTGCGGTGCTGGATGCGTTCCCGTGGCGTTCTGGCTCCGATTAGACGCGTTGTACCGGTGA
TTCCACCACGTTGCGATCGTCATGGCACCTGCGTTTCATCTGGCCCGCGGGCAGTAGCCCTGGCG
GTGCCTGGAACCCAGAAACGCAGCAGCACCAGGTAACAGAAGCCGTGCTACAGGAACGAAAGCAC
GGTTACACAGCCCAAAGCCGTACCAAACACTACCAAACACTACCAAACACTACCAAAGAACTATA
CTAAAGACCACAGACTCCACAGACTCCCCATTCAACCGCCCATCA
Right flanking sequence: Indices 23104 -- 23603
AAACCCAGTATAGGACGACTTTTCTCCACTCCTGAAACTACCCCTGAATTCTTCCACCGACCCGA
ATAGCCCACTAACAGAAACTAACCCGCGTCTAACCCGCCACTAACCCACGACTAACTACTAATCC
ATTACTAAACCACTACGCTTCCACTACTGCACCCACAACCGCTCACTACACTTCACTCTATCCCC
TTACCCATCTCCCTTCACTCATCTACCCTTACTCATCACTACGTACCATAAAACCTACACACCAA
AAAGTAACCACCACCACACACCACCACCACTACCACAGCACTCCCCGCCGCCGGCTACAGTTGCC
GTGCTGCCCCCGTCCGCCTTGTGCCGTCCAAGCAACCGGTCGCGTCCGTGGCGGGCCCGCTGCAT
AGCGCGATAAGCAAACATCCTTTATATAGTGACATCGCCTAGGCAGGCCCCAGGCTGGGCTAACC
GGTGCATAGCTATTGTTAGACTGCATAGTCATCGGTCGTCCTGTT
Found at i:23222 original size:11 final size:11
Alignment explanation
Indices: 23186--23224 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
23176 ACTAACAGAA
23186 ACTAACCCGCG
1 ACTAACCCGCG
* *
23197 TCTAACCCGCC
1 ACTAACCCGCG
*
23208 ACTAACCCACG
1 ACTAACCCGCG
23219 ACTAAC
1 ACTAAC
23225 TACTAATCCA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.31, C:0.46, G:0.10, T:0.13
Consensus pattern (11 bp):
ACTAACCCGCG
Left flanking sequence: Indices 22686 -- 23185
TGATGGTGATGGAGCATGAATGGCGAAGAACAAGGTGACGGGATGACGTACAGAAGTGCTTGTGT
GTGTATTGCGGTGCTGGATGCGTTCCCGTGGCGTTCTGGCTCCGATTAGACGCGTTGTACCGGTG
ATTCCACCACGTTGCGATCGTCATGGCACCTGCGTTTCATCTGGCCCGCGGGCAGTAGCCCTGGC
GGTGCCTGGAACCCAGAAACGCAGCAGCACCAGGTAACAGAAGCCGTGCTACAGGAACGAAAGCA
CGGTTACACAGCCCAAAGCCGTACCAAACACTACCAAACACTACCAAACACTACCAAAGAACTAT
ACTAAAGACCACAGACTCCACAGACTCCCCATTCAACCGCCCATCACCTTATCACCTCTTCTTCA
TCTCCTCCTTCTCATCCCTTCTCATCTCAAACCCAGTATAGGACGACTTTTCTCCACTCCTGAAA
CTACCCCTGAATTCTTCCACCGACCCGAATAGCCCACTAACAGAA
Right flanking sequence: Indices 23225 -- 23724
TACTAATCCATTACTAAACCACTACGCTTCCACTACTGCACCCACAACCGCTCACTACACTTCAC
TCTATCCCCTTACCCATCTCCCTTCACTCATCTACCCTTACTCATCACTACGTACCATAAAACCT
ACACACCAAAAAGTAACCACCACCACACACCACCACCACTACCACAGCACTCCCCGCCGCCGGCT
ACAGTTGCCGTGCTGCCCCCGTCCGCCTTGTGCCGTCCAAGCAACCGGTCGCGTCCGTGGCGGGC
CCGCTGCATAGCGCGATAAGCAAACATCCTTTATATAGTGACATCGCCTAGGCAGGCCCCAGGCT
GGGCTAACCGGTGCATAGCTATTGTTAGACTGCATAGTCATCGGTCGTCCTGTTCTCACCGCCGT
TTGCACCGCTCACACCGTTTTGTTCACGTTTTGTCGGTGCTGTCTGAGCCTTCTTCCGTCTGATT
TTTCAAAGCACGCCTCCGCCACCCGCTACGCGTCAACAGCTGAGG
Found at i:23321 original size:14 final size:13
Alignment explanation
Indices: 23296--23335 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 13
23286 TCACTCTATC
*
23296 CCCTTACCCATCT
1 CCCTTACTCATCT
23309 CCCTTCACTCATCT
1 CCCTT-ACTCATCT
23323 ACCCTTACTCATC
1 -CCCTTACTCATC
23336 ACTACGTACC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
13 5 0.21
14 14 0.58
15 5 0.21
ACGTcount: A:0.17, C:0.50, G:0.00, T:0.33
Consensus pattern (13 bp):
CCCTTACTCATCT
Left flanking sequence: Indices 22796 -- 23295
TTAGACGCGTTGTACCGGTGATTCCACCACGTTGCGATCGTCATGGCACCTGCGTTTCATCTGGC
CCGCGGGCAGTAGCCCTGGCGGTGCCTGGAACCCAGAAACGCAGCAGCACCAGGTAACAGAAGCC
GTGCTACAGGAACGAAAGCACGGTTACACAGCCCAAAGCCGTACCAAACACTACCAAACACTACC
AAACACTACCAAAGAACTATACTAAAGACCACAGACTCCACAGACTCCCCATTCAACCGCCCATC
ACCTTATCACCTCTTCTTCATCTCCTCCTTCTCATCCCTTCTCATCTCAAACCCAGTATAGGACG
ACTTTTCTCCACTCCTGAAACTACCCCTGAATTCTTCCACCGACCCGAATAGCCCACTAACAGAA
ACTAACCCGCGTCTAACCCGCCACTAACCCACGACTAACTACTAATCCATTACTAAACCACTACG
CTTCCACTACTGCACCCACAACCGCTCACTACACTTCACTCTATC
Right flanking sequence: Indices 23336 -- 23835
ACTACGTACCATAAAACCTACACACCAAAAAGTAACCACCACCACACACCACCACCACTACCACA
GCACTCCCCGCCGCCGGCTACAGTTGCCGTGCTGCCCCCGTCCGCCTTGTGCCGTCCAAGCAACC
GGTCGCGTCCGTGGCGGGCCCGCTGCATAGCGCGATAAGCAAACATCCTTTATATAGTGACATCG
CCTAGGCAGGCCCCAGGCTGGGCTAACCGGTGCATAGCTATTGTTAGACTGCATAGTCATCGGTC
GTCCTGTTCTCACCGCCGTTTGCACCGCTCACACCGTTTTGTTCACGTTTTGTCGGTGCTGTCTG
AGCCTTCTTCCGTCTGATTTTTCAAAGCACGCCTCCGCCACCCGCTACGCGTCAACAGCTGAGGT
TCGGAATTTGATTAGCACCAGGTGAAACACCGCCCTACCCTGAGCACTCGCATCGCCCGCGACTT
GAAACAACCCAGTCGCCGTGACCCGTGGCACCCATCTCCCACCGT
Found at i:24006 original size:11 final size:11
Alignment explanation
Indices: 23976--24035 Score: 61
Period size: 11 Copynumber: 5.4 Consensus size: 11
23966 GACTACCAAC
*
23976 CACCAGCACCAG
1 CACCAGCA-CTG
23988 CACCAGCACTG
1 CACCAGCACTG
*
23999 CACTAGCACTG
1 CACCAGCACTG
24010 CACCCA-CACTG
1 CA-CCAGCACTG
24021 CACCCA-CACTG
1 CA-CCAGCACTG
24032 CACC
1 CACC
24036 CACACCACAC
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
10 2 0.05
11 32 0.73
12 10 0.23
ACGTcount: A:0.28, C:0.50, G:0.13, T:0.08
Consensus pattern (11 bp):
CACCAGCACTG
Left flanking sequence: Indices 23476 -- 23975
GTGGCGGGCCCGCTGCATAGCGCGATAAGCAAACATCCTTTATATAGTGACATCGCCTAGGCAGG
CCCCAGGCTGGGCTAACCGGTGCATAGCTATTGTTAGACTGCATAGTCATCGGTCGTCCTGTTCT
CACCGCCGTTTGCACCGCTCACACCGTTTTGTTCACGTTTTGTCGGTGCTGTCTGAGCCTTCTTC
CGTCTGATTTTTCAAAGCACGCCTCCGCCACCCGCTACGCGTCAACAGCTGAGGTTCGGAATTTG
ATTAGCACCAGGTGAAACACCGCCCTACCCTGAGCACTCGCATCGCCCGCGACTTGAAACAACCC
AGTCGCCGTGACCCGTGGCACCCATCTCCCACCGTTAGCACCCGTGCCTGTGTTTATTAGCACGG
CCAACCCAGACTATCCGATAAGCGCTGTCTACGCGTTGAGAGGACACCTGTGACCCAGATCAAGC
ATTGTTGGAGAGACCGTGCCGTACTGCTACGCCACGACTACCAAC
Right flanking sequence: Indices 24036 -- 24535
CACACCACACTAGCACTGTTACAGTCGCCAGTCTGTCAAGTCGCCAGTCTGTCAAGTCGCCAGTG
TCAAAGCTAGTCTGTCAAAGTAACAGACACCACGCTAGTCTGCCAGCCACCACTGCTACCACTGC
TAGCCACCACTGCCAGTATCTGCCAGTACCACTGCACTAGCCACCACTACCCTCCACCACCCTTG
ATTTCTAGTATGACCACCTACACCGAGATGGCCCCGCTGTGCTTGGACCCCAAGACACGGCCCCA
GGGCCCCGCTCCGCGCTCGTACTACACCACCACCACCACCTCGCACCGCAAACCGCCCCCCGACG
ACGACCTGGGCCTCGATCTCGAGCTCGACTTGGGCCTGTCGCTCGACGCCGACCTCGGGTTCAGC
GACTACTTGCTCGGGTCGCTGCCCCAGCTGGTGTACCGCAACGAGCACGGGCTGACGCTGGGCCC
GCTCCCCCACCCCGACGACGACCTCGTCGACTCTCCCGAGTTAGG
Found at i:24013 original size:22 final size:22
Alignment explanation
Indices: 23994--24053 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 22
23984 CCAGCACCAG
23994 CACTGCACTAGCACTGCACCCA
1 CACTGCACTAGCACTGCACCCA
*
24016 CACTGCACCCA-CACTGCACCCA
1 CACTGCA-CTAGCACTGCACCCA
**
24038 CACCACACTAGCACTG
1 CACTGCACTAGCACTG
24054 TTACAGTCGC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
21 2 0.06
22 28 0.88
23 2 0.06
ACGTcount: A:0.28, C:0.48, G:0.12, T:0.12
Consensus pattern (22 bp):
CACTGCACTAGCACTGCACCCA
Left flanking sequence: Indices 23494 -- 23993
AGCGCGATAAGCAAACATCCTTTATATAGTGACATCGCCTAGGCAGGCCCCAGGCTGGGCTAACC
GGTGCATAGCTATTGTTAGACTGCATAGTCATCGGTCGTCCTGTTCTCACCGCCGTTTGCACCGC
TCACACCGTTTTGTTCACGTTTTGTCGGTGCTGTCTGAGCCTTCTTCCGTCTGATTTTTCAAAGC
ACGCCTCCGCCACCCGCTACGCGTCAACAGCTGAGGTTCGGAATTTGATTAGCACCAGGTGAAAC
ACCGCCCTACCCTGAGCACTCGCATCGCCCGCGACTTGAAACAACCCAGTCGCCGTGACCCGTGG
CACCCATCTCCCACCGTTAGCACCCGTGCCTGTGTTTATTAGCACGGCCAACCCAGACTATCCGA
TAAGCGCTGTCTACGCGTTGAGAGGACACCTGTGACCCAGATCAAGCATTGTTGGAGAGACCGTG
CCGTACTGCTACGCCACGACTACCAACCACCAGCACCAGCACCAG
Right flanking sequence: Indices 24054 -- 24553
TTACAGTCGCCAGTCTGTCAAGTCGCCAGTCTGTCAAGTCGCCAGTGTCAAAGCTAGTCTGTCAA
AGTAACAGACACCACGCTAGTCTGCCAGCCACCACTGCTACCACTGCTAGCCACCACTGCCAGTA
TCTGCCAGTACCACTGCACTAGCCACCACTACCCTCCACCACCCTTGATTTCTAGTATGACCACC
TACACCGAGATGGCCCCGCTGTGCTTGGACCCCAAGACACGGCCCCAGGGCCCCGCTCCGCGCTC
GTACTACACCACCACCACCACCTCGCACCGCAAACCGCCCCCCGACGACGACCTGGGCCTCGATC
TCGAGCTCGACTTGGGCCTGTCGCTCGACGCCGACCTCGGGTTCAGCGACTACTTGCTCGGGTCG
CTGCCCCAGCTGGTGTACCGCAACGAGCACGGGCTGACGCTGGGCCCGCTCCCCCACCCCGACGA
CGACCTCGTCGACTCTCCCGAGTTAGGAGCCCCGTCCGCGACCAA
Found at i:24036 original size:11 final size:11
Alignment explanation
Indices: 24005--24040 Score: 72
Period size: 11 Copynumber: 3.3 Consensus size: 11
23995 ACTGCACTAG
24005 CACTGCACCCA
1 CACTGCACCCA
24016 CACTGCACCCA
1 CACTGCACCCA
24027 CACTGCACCCA
1 CACTGCACCCA
24038 CAC
1 CAC
24041 CACACTAGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 25 1.00
ACGTcount: A:0.28, C:0.56, G:0.08, T:0.08
Consensus pattern (11 bp):
CACTGCACCCA
Left flanking sequence: Indices 23505 -- 24004
CAAACATCCTTTATATAGTGACATCGCCTAGGCAGGCCCCAGGCTGGGCTAACCGGTGCATAGCT
ATTGTTAGACTGCATAGTCATCGGTCGTCCTGTTCTCACCGCCGTTTGCACCGCTCACACCGTTT
TGTTCACGTTTTGTCGGTGCTGTCTGAGCCTTCTTCCGTCTGATTTTTCAAAGCACGCCTCCGCC
ACCCGCTACGCGTCAACAGCTGAGGTTCGGAATTTGATTAGCACCAGGTGAAACACCGCCCTACC
CTGAGCACTCGCATCGCCCGCGACTTGAAACAACCCAGTCGCCGTGACCCGTGGCACCCATCTCC
CACCGTTAGCACCCGTGCCTGTGTTTATTAGCACGGCCAACCCAGACTATCCGATAAGCGCTGTC
TACGCGTTGAGAGGACACCTGTGACCCAGATCAAGCATTGTTGGAGAGACCGTGCCGTACTGCTA
CGCCACGACTACCAACCACCAGCACCAGCACCAGCACTGCACTAG
Right flanking sequence: Indices 24041 -- 24540
CACACTAGCACTGTTACAGTCGCCAGTCTGTCAAGTCGCCAGTCTGTCAAGTCGCCAGTGTCAAA
GCTAGTCTGTCAAAGTAACAGACACCACGCTAGTCTGCCAGCCACCACTGCTACCACTGCTAGCC
ACCACTGCCAGTATCTGCCAGTACCACTGCACTAGCCACCACTACCCTCCACCACCCTTGATTTC
TAGTATGACCACCTACACCGAGATGGCCCCGCTGTGCTTGGACCCCAAGACACGGCCCCAGGGCC
CCGCTCCGCGCTCGTACTACACCACCACCACCACCTCGCACCGCAAACCGCCCCCCGACGACGAC
CTGGGCCTCGATCTCGAGCTCGACTTGGGCCTGTCGCTCGACGCCGACCTCGGGTTCAGCGACTA
CTTGCTCGGGTCGCTGCCCCAGCTGGTGTACCGCAACGAGCACGGGCTGACGCTGGGCCCGCTCC
CCCACCCCGACGACGACCTCGTCGACTCTCCCGAGTTAGGAGCCC
Found at i:24079 original size:16 final size:16
Alignment explanation
Indices: 24058--24099 Score: 84
Period size: 16 Copynumber: 2.6 Consensus size: 16
24048 GCACTGTTAC
24058 AGTCGCCAGTCTGTCA
1 AGTCGCCAGTCTGTCA
24074 AGTCGCCAGTCTGTCA
1 AGTCGCCAGTCTGTCA
24090 AGTCGCCAGT
1 AGTCGCCAGT
24100 GTCAAAGCTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.19, C:0.31, G:0.26, T:0.24
Consensus pattern (16 bp):
AGTCGCCAGTCTGTCA
Left flanking sequence: Indices 23558 -- 24057
CGGTGCATAGCTATTGTTAGACTGCATAGTCATCGGTCGTCCTGTTCTCACCGCCGTTTGCACCG
CTCACACCGTTTTGTTCACGTTTTGTCGGTGCTGTCTGAGCCTTCTTCCGTCTGATTTTTCAAAG
CACGCCTCCGCCACCCGCTACGCGTCAACAGCTGAGGTTCGGAATTTGATTAGCACCAGGTGAAA
CACCGCCCTACCCTGAGCACTCGCATCGCCCGCGACTTGAAACAACCCAGTCGCCGTGACCCGTG
GCACCCATCTCCCACCGTTAGCACCCGTGCCTGTGTTTATTAGCACGGCCAACCCAGACTATCCG
ATAAGCGCTGTCTACGCGTTGAGAGGACACCTGTGACCCAGATCAAGCATTGTTGGAGAGACCGT
GCCGTACTGCTACGCCACGACTACCAACCACCAGCACCAGCACCAGCACTGCACTAGCACTGCAC
CCACACTGCACCCACACTGCACCCACACCACACTAGCACTGTTAC
Right flanking sequence: Indices 24100 -- 24599
GTCAAAGCTAGTCTGTCAAAGTAACAGACACCACGCTAGTCTGCCAGCCACCACTGCTACCACTG
CTAGCCACCACTGCCAGTATCTGCCAGTACCACTGCACTAGCCACCACTACCCTCCACCACCCTT
GATTTCTAGTATGACCACCTACACCGAGATGGCCCCGCTGTGCTTGGACCCCAAGACACGGCCCC
AGGGCCCCGCTCCGCGCTCGTACTACACCACCACCACCACCTCGCACCGCAAACCGCCCCCCGAC
GACGACCTGGGCCTCGATCTCGAGCTCGACTTGGGCCTGTCGCTCGACGCCGACCTCGGGTTCAG
CGACTACTTGCTCGGGTCGCTGCCCCAGCTGGTGTACCGCAACGAGCACGGGCTGACGCTGGGCC
CGCTCCCCCACCCCGACGACGACCTCGTCGACTCTCCCGAGTTAGGAGCCCCGTCCGCGACCAAG
GCGACCAAGGCTCCTAACTCGATGCTCCTAACCGGAGACACCCAG
Found at i:26423 original size:19 final size:19
Alignment explanation
Indices: 26399--26447 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
26389 GTGAATGTGG
**
26399 AGTCAGCCAGTGGGCTCGA
1 AGTCAGCCAGTACGCTCGA
*
26418 AGTCAGCCAGTACGCTCTA
1 AGTCAGCCAGTACGCTCGA
26437 AGTCAGCCAGT
1 AGTCAGCCAGT
26448 TGGCACCATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.24, C:0.29, G:0.29, T:0.18
Consensus pattern (19 bp):
AGTCAGCCAGTACGCTCGA
Left flanking sequence: Indices 25899 -- 26398
GACGACGACGACGACGAGTCGCACGGCGAGTTGTGGTACCGCGACCCGGACCCGGCGCTGATCGC
GGTGGAGCGCGACACCCCGTTCCCGCCGGTGTTGGCGGTGTACCGCCCGCACAACCCGCGGATCC
GCCGCAAGTTGGCGCTGCTGTTTGCCAAGAACCGCCGGGTGGGCGCTCCCGGGGTGGTCAACGCC
AAGTTCCGGCTGCTGGAGCTCGCCGAGGACCTAGGCGCCGGGCTGGGCGTGGACAACTACTACGC
GGGCGGCGACGGGCTCTACTTTGTCGAGAACCCCAGCGACGACCTGCCCGACGACGACAAGCTCG
GGTGGATCACCGTGTACGAGGACACGCGGGTGTTTGGCAGCCACAACAAGGGGATGTTCGACATG
GTGGTGGGGTTGACGTTGGCCGCGGGCCTCGACGCGAGCCCGGCGTGAGCTGTGCGGGGTGTTTG
AGCCACGTTTGGGTCCATTGAGCCTGGTGAACTGGGTGAATGTGG
Right flanking sequence: Indices 26448 -- 26947
TGGCACCATTTGAAACGCAACACCTGCTTATGAAGTCAGGATATATAGTCATATGAACATAATAC
CAATGCAATAAACGTAATCGAAGACCGGAGCACCTAGCCTGAAGCACCTAGTCTGGAGCACATAG
CCTGGCTGGGGGGCCGCAGGCGGCGCCCCCCAGACCCCCCAACGCTTTCTGTTTCTCAGGCCGTT
CAGGTATTTCTCGCGGTATTGGTGCGATCCGCAGTTTGGTTGCAAAACGCCTGATTGGAATTCGG
AATGAGCCATCGAGAAAAAGCAAGTCTATGGGTTGTTTCCTTGGTTTTTCTGTTGACTTTCTGTT
GATTTTCTGCTGATTCGACAGGTTTTAGAATTTCATTGGGTCTTTCTCTGATTCGATCCGAGCGA
TCGATGTTTCATTTATTCCATGGGCACATTTTCAACCTCACCAGTTGCGACGAGAATGTTGGCTC
ATTCTCAACACTACGAAATGCCCAATGCTATTGACTACACTGTGG
Found at i:26582 original size:14 final size:14
Alignment explanation
Indices: 26539--26582 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
26529 ATCGAAGACC
26539 GGAGCACCTAGCCT
1 GGAGCACCTAGCCT
* *
26553 GAAGCACCTAGTCT
1 GGAGCACCTAGCCT
*
26567 GGAGCACATAGCCT
1 GGAGCACCTAGCCT
26581 GG
1 GG
26583 CTGGGGGGCC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.25, C:0.30, G:0.30, T:0.16
Consensus pattern (14 bp):
GGAGCACCTAGCCT
Left flanking sequence: Indices 26039 -- 26538
GGCGCTGCTGTTTGCCAAGAACCGCCGGGTGGGCGCTCCCGGGGTGGTCAACGCCAAGTTCCGGC
TGCTGGAGCTCGCCGAGGACCTAGGCGCCGGGCTGGGCGTGGACAACTACTACGCGGGCGGCGAC
GGGCTCTACTTTGTCGAGAACCCCAGCGACGACCTGCCCGACGACGACAAGCTCGGGTGGATCAC
CGTGTACGAGGACACGCGGGTGTTTGGCAGCCACAACAAGGGGATGTTCGACATGGTGGTGGGGT
TGACGTTGGCCGCGGGCCTCGACGCGAGCCCGGCGTGAGCTGTGCGGGGTGTTTGAGCCACGTTT
GGGTCCATTGAGCCTGGTGAACTGGGTGAATGTGGAGTCAGCCAGTGGGCTCGAAGTCAGCCAGT
ACGCTCTAAGTCAGCCAGTTGGCACCATTTGAAACGCAACACCTGCTTATGAAGTCAGGATATAT
AGTCATATGAACATAATACCAATGCAATAAACGTAATCGAAGACC
Right flanking sequence: Indices 26583 -- 27082
CTGGGGGGCCGCAGGCGGCGCCCCCCAGACCCCCCAACGCTTTCTGTTTCTCAGGCCGTTCAGGT
ATTTCTCGCGGTATTGGTGCGATCCGCAGTTTGGTTGCAAAACGCCTGATTGGAATTCGGAATGA
GCCATCGAGAAAAAGCAAGTCTATGGGTTGTTTCCTTGGTTTTTCTGTTGACTTTCTGTTGATTT
TCTGCTGATTCGACAGGTTTTAGAATTTCATTGGGTCTTTCTCTGATTCGATCCGAGCGATCGAT
GTTTCATTTATTCCATGGGCACATTTTCAACCTCACCAGTTGCGACGAGAATGTTGGCTCATTCT
CAACACTACGAAATGCCCAATGCTATTGACTACACTGTGGTTGGCCCAGTTTTGCCGTGCCAGGG
GTGAATAACTCCGGGTCTTGGTAAGCAAAACACCGGCTATTTATACCGTAGACTGGTTGCCATTC
TCTAATGGGACTACAATATGCAGATGAGCTAACGGACGAGTCCGG
Found at i:26786 original size:11 final size:11
Alignment explanation
Indices: 26753--26787 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
26743 TTTCCTTGGT
26753 TTTTCTGTTGA
1 TTTTCTGTTGA
*
26764 CTTTCTGTTGA
1 TTTTCTGTTGA
*
26775 TTTTCTGCTGA
1 TTTTCTGTTGA
26786 TT
1 TT
26788 CGACAGGTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.09, C:0.14, G:0.17, T:0.60
Consensus pattern (11 bp):
TTTTCTGTTGA
Left flanking sequence: Indices 26253 -- 26752
GTGTTTGGCAGCCACAACAAGGGGATGTTCGACATGGTGGTGGGGTTGACGTTGGCCGCGGGCCT
CGACGCGAGCCCGGCGTGAGCTGTGCGGGGTGTTTGAGCCACGTTTGGGTCCATTGAGCCTGGTG
AACTGGGTGAATGTGGAGTCAGCCAGTGGGCTCGAAGTCAGCCAGTACGCTCTAAGTCAGCCAGT
TGGCACCATTTGAAACGCAACACCTGCTTATGAAGTCAGGATATATAGTCATATGAACATAATAC
CAATGCAATAAACGTAATCGAAGACCGGAGCACCTAGCCTGAAGCACCTAGTCTGGAGCACATAG
CCTGGCTGGGGGGCCGCAGGCGGCGCCCCCCAGACCCCCCAACGCTTTCTGTTTCTCAGGCCGTT
CAGGTATTTCTCGCGGTATTGGTGCGATCCGCAGTTTGGTTGCAAAACGCCTGATTGGAATTCGG
AATGAGCCATCGAGAAAAAGCAAGTCTATGGGTTGTTTCCTTGGT
Right flanking sequence: Indices 26788 -- 27287
CGACAGGTTTTAGAATTTCATTGGGTCTTTCTCTGATTCGATCCGAGCGATCGATGTTTCATTTA
TTCCATGGGCACATTTTCAACCTCACCAGTTGCGACGAGAATGTTGGCTCATTCTCAACACTACG
AAATGCCCAATGCTATTGACTACACTGTGGTTGGCCCAGTTTTGCCGTGCCAGGGGTGAATAACT
CCGGGTCTTGGTAAGCAAAACACCGGCTATTTATACCGTAGACTGGTTGCCATTCTCTAATGGGA
CTACAATATGCAGATGAGCTAACGGACGAGTCCGGGGTAAATACGAGCAACGGAGGTCAAACGAG
GTTGTTTCGCGAGTTTAGGCTTTTAATGGGGTTGTTGGTCCAGGGATTGTGTCCTCGACAACGTT
GAATCACTGGCTGTCACCTTGACAACGGGGTGTATTTCGTGTTGCCAATTGGACCTCGTACCAGG
TGGTTGCCTATTTCAACGTCGACCGTCGCTATCTACGACGTTTAT
Found at i:27936 original size:33 final size:35
Alignment explanation
Indices: 27848--27939 Score: 122
Period size: 33 Copynumber: 2.7 Consensus size: 35
27838 CGGTCACAGT
27848 TCAAAAGCGGCTGAAATGGTTGCAAATGGCCAAAAC
1 TCAAAAGCGGCTGAAATGGTTGCAAATGGCC-AAAC
*
27884 TCAAAA--GGCTGAAAT-GTTGCAAAT-GCC-ACC
1 TCAAAAGCGGCTGAAATGGTTGCAAATGGCCAAAC
*
27914 TCAAAAGCGGCTGCAATGGTTGCAAA
1 TCAAAAGCGGCTGAAATGGTTGCAAA
27940 ACTGCTAGCC
Statistics
Matches: 51, Mismatches: 2, Indels: 9
0.82 0.03 0.15
Matches are distributed among these distances:
30 8 0.16
32 11 0.22
33 17 0.33
34 9 0.18
36 6 0.12
ACGTcount: A:0.37, C:0.21, G:0.24, T:0.18
Consensus pattern (35 bp):
TCAAAAGCGGCTGAAATGGTTGCAAATGGCCAAAC
Left flanking sequence: Indices 27348 -- 27847
GGTGGTGCATTAAAATCACAGCTACCTGAAGCCAAAAAAACAGAAAGTGGCATCTAGTTGACTTA
GCTACCATTAAAACTTCATTAAAAACTTCTTCAAAATTACTGAGAGCTTCAACGCCGAGGAGATT
CTTTCTTGATCGGGTACCCTGAATTTTAAATAAATCGATTTTGAAAAATTCAAACACTCCCGGTA
CTCGGATCTCTGGGCACAGCTATTTTTCATCCACACGTGTGAGGTGCGTCTTTCTCTACTTCCCT
GATTTTTTCCTCTACACGGTGGCTGCGTGGCTGCGTTATGACTGCGCTATGGCTGCAAATGGCTG
CAAATGGTCACAGTTCAAAAGCGGCTGAACTGGCTGCAAATGGTCACTACTCAAGATTGGCTAAA
TTGGCCACAGCTGCTGAAATGGTTGCACATGGTCACAATTCAAACGCGCTGTAATGGTTGCAATT
AGTCTCAATTTGAAAGCGGCTCAAATGGCTGCAATCGGTCACAGT
Right flanking sequence: Indices 27940 -- 28439
ACTGCTAGCCGGTCTGCAACCAAAACCCAGTAATAAATCGCTAGGCCACCTACTCAATCGCTACC
TACTCAATACCTTCATTTGTTATTAATATACACGCGGTTTAACGCAAGTAGTCGCGCAAGTACGA
CCCCAACTTGGTGGCGCCCTCCTCCAACGCATCCTTCAACACGTCCAAGTCCTGGCCGGCGTTGC
CCGAAAACCGCAGGGCAAACTCCCGGGCCTGCAGCTCGATGTCCTGCAAATTGAGCAGCCCCAGC
GCCGCCCGCCCTCTAGGCTGGTCGGGCTCACCAAAGTACAGCTGCGACGAGATCAGCTGGGCGCC
GTTGAACAGCTGCAACTTCAGCTGGGCCTCGCGGCGCGCGTCCTCGTCAAACCGCGGCCCCCGCC
CAAAGAACTCGTCGGACGAGATCCCCTTCTGGGTGCCGTACTTCAGCGACACCTCCCCGGTGTAC
TTGACCTCCTTGTACTGCTTCTTGGGGCCCTGGTCCAAGTTGTTG
Found at i:30474 original size:22 final size:23
Alignment explanation
Indices: 30416--30485 Score: 106
Period size: 23 Copynumber: 3.1 Consensus size: 23
30406 ACCACCTTAT
* *
30416 ACCACCATATCTAACCATCATCT
1 ACCACCATATCTAACCATAATCC
*
30439 ACCTCCATATCTAACCATAATCC
1 ACCACCATATCTAACCATAATCC
30462 ACCACC-TATCTAACCATAATCC
1 ACCACCATATCTAACCATAATCC
30484 AC
1 AC
30486 TACCCACCTA
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
22 18 0.42
23 25 0.58
ACGTcount: A:0.36, C:0.40, G:0.00, T:0.24
Consensus pattern (23 bp):
ACCACCATATCTAACCATAATCC
Left flanking sequence: Indices 29916 -- 30415
CACACTTGGTCGTTACCACGTTGAAGTGACGAAACTGAGAAACGTCAATGGTTAGGGTCCTGTCA
ACTAAAAGCGTTCAATTGAAACGGTTGAGGCGTGGATTGATTGGTTGGTGTCTATGGTTGACGCC
TATGGTAAGGTTGGTTACCTAGTAGTGTTGTTTTTCACACCCATTTTTTAAAGTCGAGAGACAAT
CACTAGTGTACGTCTATCGTGTCTTCCGTCAACTCTACGACGGTCTAAATCACAACACGAAACGA
CCCAAATGTGGCTTGGTATCAATTGCCTTATCCAAACAATGTTTTGCCAAATCGTCTCCGTCGCC
CTTTTGTCCCATTTCCAGCATTTTTGTACCATTCTTGTAAAATCAAAGAATCCACCAAACTGAAA
GAAAACTTCATTCAAACTCAAACCAATATCACCACTAATCTACACAACCTCACAATACCCACCAT
CACTACAACTACCATCATACACCACTACCCATATAACCACCTTAT
Right flanking sequence: Indices 30486 -- 30985
TACCCACCTAACCACCACCCACCTACCTCCCCACACTCTTCCTTCTCTATCTGTGCAATTCATTA
TATACATAAATGAGGCCGGGGCCTGGGGACTAGTGGAAGGGACGCGACCCACCACGGGCAAACTC
AATCACCTTCCACCCGTCGGTGGTCTTGTTGTCAAACTCCTCGGGGATCCGCGTGAACACCATCG
CGTACGTCAGCATCTGGATGTTGTCCTCGGTACCGGCAGCGATCTCGCCGTCCTTTTTGCGGTAC
AAGTGGATCTCCTGGGCCCGGCACAGCGCCACAATCACGGGGGTGTCGTTGGGCTGCAACATCTT
GCAGGTGACAATGTCCACCCCGCGGATGTCCTGGATCTTCAGGTCGGAAAACAACCCCTGCTCGA
CAAACTGCTTGTTGTTGGCCTGCCACACGTTGAACGGCGCCTCGGAAAACCACTCCTTGAGCACC
GCCTCGTCGTTCTTGAGGTACGCCTCCACGAGCTCGGGCACAATG
Found at i:30492 original size:26 final size:22
Alignment explanation
Indices: 30416--30499 Score: 96
Period size: 22 Copynumber: 3.7 Consensus size: 22
30406 ACCACCTTAT
* *
30416 ACCACCATATCTAACCATCATCT
1 ACCACC-TATCTAACCATAATCC
*
30439 ACCTCCATATCTAACCATAATCC
1 ACCACC-TATCTAACCATAATCC
30462 ACCACCTATCTAACCATAATCC
1 ACCACCTATCTAACCATAATCC
* * *
30484 ACTACCCACCTAACCA
1 ACCACCTATCTAACCA
30500 CCACCCACCT
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
22 29 0.54
23 25 0.46
ACGTcount: A:0.36, C:0.42, G:0.00, T:0.23
Consensus pattern (22 bp):
ACCACCTATCTAACCATAATCC
Left flanking sequence: Indices 29916 -- 30415
CACACTTGGTCGTTACCACGTTGAAGTGACGAAACTGAGAAACGTCAATGGTTAGGGTCCTGTCA
ACTAAAAGCGTTCAATTGAAACGGTTGAGGCGTGGATTGATTGGTTGGTGTCTATGGTTGACGCC
TATGGTAAGGTTGGTTACCTAGTAGTGTTGTTTTTCACACCCATTTTTTAAAGTCGAGAGACAAT
CACTAGTGTACGTCTATCGTGTCTTCCGTCAACTCTACGACGGTCTAAATCACAACACGAAACGA
CCCAAATGTGGCTTGGTATCAATTGCCTTATCCAAACAATGTTTTGCCAAATCGTCTCCGTCGCC
CTTTTGTCCCATTTCCAGCATTTTTGTACCATTCTTGTAAAATCAAAGAATCCACCAAACTGAAA
GAAAACTTCATTCAAACTCAAACCAATATCACCACTAATCTACACAACCTCACAATACCCACCAT
CACTACAACTACCATCATACACCACTACCCATATAACCACCTTAT
Right flanking sequence: Indices 30500 -- 30999
CCACCCACCTACCTCCCCACACTCTTCCTTCTCTATCTGTGCAATTCATTATATACATAAATGAG
GCCGGGGCCTGGGGACTAGTGGAAGGGACGCGACCCACCACGGGCAAACTCAATCACCTTCCACC
CGTCGGTGGTCTTGTTGTCAAACTCCTCGGGGATCCGCGTGAACACCATCGCGTACGTCAGCATC
TGGATGTTGTCCTCGGTACCGGCAGCGATCTCGCCGTCCTTTTTGCGGTACAAGTGGATCTCCTG
GGCCCGGCACAGCGCCACAATCACGGGGGTGTCGTTGGGCTGCAACATCTTGCAGGTGACAATGT
CCACCCCGCGGATGTCCTGGATCTTCAGGTCGGAAAACAACCCCTGCTCGACAAACTGCTTGTTG
TTGGCCTGCCACACGTTGAACGGCGCCTCGGAAAACCACTCCTTGAGCACCGCCTCGTCGTTCTT
GAGGTACGCCTCCACGAGCTCGGGCACAATGTAGTTGACAAGCGT
Found at i:31481 original size:12 final size:12
Alignment explanation
Indices: 31464--31489 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
31454 GCGACATCGG
31464 CGGTGGTGCGCA
1 CGGTGGTGCGCA
31476 CGGTGGTGCGCA
1 CGGTGGTGCGCA
31488 CG
1 CG
31490 CCACGGCCCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.27, G:0.50, T:0.15
Consensus pattern (12 bp):
CGGTGGTGCGCA
Left flanking sequence: Indices 30964 -- 31463
CTCCACGAGCTCGGGCACAATGTAGTTGACAAGCGTCTTCTGGAAGTCGGTCAACCGGAACAGCG
GGTCCATCAACTTGAACTGCTTCACCACCTTGGCCTGCTCGGTCTCGGAAAAGAAGCCCGTGACC
TTCTCGATGATGGTCCGCACCAACGAGATGAGCCCGTTCTCCAGCTCCTCCCACCGCTCCTGCAA
GTAGGTGATGCCCTTGCCTGCAGGCGAGGTGCGCTTGAACTTGTCCCACTTCTCGCCCACCAGGG
GACCGGTGGGCTTGTGGTCAGTGGCCACAAGCGCCCCGCCGGCCTCCTCGTTCTCCCGCACGGGC
CCCTTCCACCCGGCGGCAATCTTCTTCTTGAGCTCGCGGTTGCGCAACTCGCGACGCTGCTCCTT
GGTCAAGTAGCCCCCGTACAGCGTCAGCAGCCCGTCGTCAATCACCTCGGACACGTCCTTGTACA
CCTGGGTCTGGCGCACGGGCTCAAACGCCTTGTCGGCGACATCGG
Right flanking sequence: Indices 31490 -- 31989
CCACGGCCCACGGGCGAGTCCCACGCCTTGACGGCCGCGCCACCCACCGTCTCCGCGGTCTTTTT
CGCCACCTTGCCCACCGCCAGCGCTCCCTTTTGCGAGCGGTCGTAGGCCTCCTTGGCCCGTTTGA
ACGACTCCAGCTCGGCCATGCGGCCCGTCTCGTCCTGGAGCGCCTTGATGTTGTCCTTCAACTCC
GCTGACAGCTTCACTTCCTTCTTGAAGGTGTCCAAAAACACTTTGAGCGGCAGCTGCTGGCCCTG
CCACACAGCAGGGGCCGGGTGGAACGCGCGCACCATGGGCGCGATCGAACGCGCACTGCGGGTGC
TTCTGGAGATCATTGTCCGACTATGTACAGAGGCCAGGGATGGACAGTGGTTGGGGTCAGCCCGG
CTGAAAAATTTTGGAAGAGGTTCGCGGCCGTGTGCAGGAGCAACGGAGATCGAGCTGGGTTAAAC
GCCGAGATGGTGGCGACGGGGGCGGGTGGCGCGGGGCTGGAGAGC
Found at i:32593 original size:16 final size:16
Alignment explanation
Indices: 32572--32602 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
32562 GAATCAACAC
32572 ACCTGTAGCTTTTCAA
1 ACCTGTAGCTTTTCAA
32588 ACCTGTAGCTTTTCA
1 ACCTGTAGCTTTTCA
32603 TTCTTGAAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.23, C:0.26, G:0.13, T:0.39
Consensus pattern (16 bp):
ACCTGTAGCTTTTCAA
Left flanking sequence: Indices 32072 -- 32571
GGGTTCGGAAATTGCCGTGACCACCGGGACGGGGGCCACAAAAGGGCCAGCGGAGCGGGGCAGCG
GAAGAGGGGCGTGTGGCGGGCAAAGCTTGTGGGCATGTGGGGGCTGTGGTTGTAGATTAGGGGGA
TGGATGGTGGAATTGGGCGGTGGGAGAGGCGTGTGGGTGGTGGTTTAGGGGGGTTTAGAGGCTGG
GGCGCCCGGAAGCGCTCCGGATTTGTGTAGGGTAGTTCTAAAGGGGCCAGGGCGGTGGATTGAAG
GCTACTTTTGACTCTCTGTCAGTGCTAGCGGGTGTAGGCACGTAATAGCATACAGATCTAGCAAG
CGACATACGAGGGCACTATGCAGGTCGTGATGGTGGATAGCAGTAGAACCCAAGGCCGAAACGGG
CCATGGCACAGGGCCAGGACACATCTATGCGAACTCATCAAAGAGAGCCCGTTAAGCGCCAATAT
GCAATGTCCGGGTTAGATGCTTACACCGTGGACCCGAATCAACAC
Right flanking sequence: Indices 32603 -- 33102
TTCTTGAAGCCTTTCGTACCCGCCTTCAACCATCCTCACTAGTTTCGACAACCGTATTAGCAATC
CGCCCAGCCTTTGTTTCCTAAGCAACAGACGGCACTCTTCCTCGCCAAGCTCATCATCCATTGCC
TGATGAATGACCTGTATGTCCCACCATGCCCAAATCCCATTGTACCGCCCACCAGTCAACTTTAA
CCGTGTGTCTCGGATCACTTCAGCACACCGACTCGCTAGGGATATCGCATCATCGGCTATCGCAA
GGAGCCAAGTCACCGGAACAGACTGATCACCGACCTCACCACCTCCTACGCCCAGATGGGCCCAC
TGCTTTAATGTCGCCGCTAGCACCACCACCCGAATGTCGCCTCTCACAACCACCACTCGACTCGA
CATCATCCCTAATCCAGCAATCCACCACCCTCCTACCGCTCACACCATAGTACGATTACCCCACA
TTTCCCCCGTTCTGGCGTGATGGCTCTGATGAGCACTAGTTTGTT
Found at i:40065 original size:12 final size:12
Alignment explanation
Indices: 40036--40087 Score: 52
Period size: 12 Copynumber: 4.3 Consensus size: 12
40026 GATGACTCGG
40036 CCGATGACTCAC-
1 CCGATGAC-CACT
*
40048 CTGATGACCACT
1 CCGATGACCACT
*
40060 CCGATGACGACT
1 CCGATGACCACT
* *
40072 CCGACGACGACT
1 CCGATGACCACT
40084 CCGA
1 CCGA
40088 CGACGAGGGT
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
11 3 0.09
12 32 0.91
ACGTcount: A:0.25, C:0.38, G:0.21, T:0.15
Consensus pattern (12 bp):
CCGATGACCACT
Left flanking sequence: Indices 39536 -- 40035
TGCATCAACTGTCCTTACTCTTCTACTTTCGTGTGTCCATTGTCTTCTTTGTTTCGATTCCCTAG
AGTTTTTCAGATCTCGATTGTAATTTCTTGGTTGCCATGCATACCCACCTTAACGTCCACTCGAG
TAGCGAAAAGGTATATAAAGAGGACCATTTCAGCCCTTATTTCATCACAACATGTTCTACCAATT
ACTCATTCTCGCTTCTTCTGTCTTCGCTGACGACATTGTCCAGTGGATCGACGGCCACAAATACT
ACACGGGCTCGCCCGCGGTAGTGGGCAAGATCCTCCACCACAAGTACGACGACGCCTACGCCAAC
TCGGTGGTTTCTGCCTACACTTCTTTGTACGACGAAACCAACGGCAAGGTGCCGCTGACCCGGAT
TTCTTTGTGGAAGAAGGGCGACGACTTTGACAGCGACTATGACAGCCCCGATGACAGAAACTCCG
CTGACGAAAAGGATGATTCAGGTGACGAGTCTGCTGATGACTCGG
Right flanking sequence: Indices 40088 -- 40587
CGACGAGGGTGTCTCGCGTCGCTCGAAGCGTTCCACGAGACGCATGAAGATCATCAAGCGGGACG
ACGACTCCGACGATTCTGGTGATGATGACTCTGGTGATGACCAGTCTGACGATGAGTCTGACGAC
GATCTTGACACTCGCAAGATTGCCAGAAAAGTCACCCGTCGTTCCAGAAAGATCAAGCGTGTCGA
TGATTCTGACGACTCTGGTGACGACCACGACTCTGCCGACTCTGGCGACGACGACAACTCAGATG
ATGACTCCGACGACGACCTCAAGCGAGTGAAGGTTCGGAAGTTGACCCGTCGTTCCAAACACATC
AAGCGTGACGAATCGGACGACGAGTCTGCGGACGACAACAGCGTTGACGAGAACTCCGCTGACGA
CAACTCGGACGACTCTGGCGACGACTCTGATGATGATCTCGCTCGTAGAGTGACCAAAAAGGCTC
GCCGTAAGGTTGCTAAGCGTGGAGACGACTCCGACGACGACTCCG
Found at i:40088 original size:12 final size:12
Alignment explanation
Indices: 40057--40093 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
40047 CCTGATGACC
*
40057 ACTCCGATGACG
1 ACTCCGACGACG
40069 ACTCCGACGACG
1 ACTCCGACGACG
40081 ACTCCGACGACG
1 ACTCCGACGACG
40093 A
1 A
40094 GGGTGTCTCG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.27, C:0.38, G:0.24, T:0.11
Consensus pattern (12 bp):
ACTCCGACGACG
Left flanking sequence: Indices 39557 -- 40056
TCTACTTTCGTGTGTCCATTGTCTTCTTTGTTTCGATTCCCTAGAGTTTTTCAGATCTCGATTGT
AATTTCTTGGTTGCCATGCATACCCACCTTAACGTCCACTCGAGTAGCGAAAAGGTATATAAAGA
GGACCATTTCAGCCCTTATTTCATCACAACATGTTCTACCAATTACTCATTCTCGCTTCTTCTGT
CTTCGCTGACGACATTGTCCAGTGGATCGACGGCCACAAATACTACACGGGCTCGCCCGCGGTAG
TGGGCAAGATCCTCCACCACAAGTACGACGACGCCTACGCCAACTCGGTGGTTTCTGCCTACACT
TCTTTGTACGACGAAACCAACGGCAAGGTGCCGCTGACCCGGATTTCTTTGTGGAAGAAGGGCGA
CGACTTTGACAGCGACTATGACAGCCCCGATGACAGAAACTCCGCTGACGAAAAGGATGATTCAG
GTGACGAGTCTGCTGATGACTCGGCCGATGACTCACCTGATGACC
Right flanking sequence: Indices 40094 -- 40593
GGGTGTCTCGCGTCGCTCGAAGCGTTCCACGAGACGCATGAAGATCATCAAGCGGGACGACGACT
CCGACGATTCTGGTGATGATGACTCTGGTGATGACCAGTCTGACGATGAGTCTGACGACGATCTT
GACACTCGCAAGATTGCCAGAAAAGTCACCCGTCGTTCCAGAAAGATCAAGCGTGTCGATGATTC
TGACGACTCTGGTGACGACCACGACTCTGCCGACTCTGGCGACGACGACAACTCAGATGATGACT
CCGACGACGACCTCAAGCGAGTGAAGGTTCGGAAGTTGACCCGTCGTTCCAAACACATCAAGCGT
GACGAATCGGACGACGAGTCTGCGGACGACAACAGCGTTGACGAGAACTCCGCTGACGACAACTC
GGACGACTCTGGCGACGACTCTGATGATGATCTCGCTCGTAGAGTGACCAAAAAGGCTCGCCGTA
AGGTTGCTAAGCGTGGAGACGACTCCGACGACGACTCCGCTGACG
Found at i:40342 original size:27 final size:27
Alignment explanation
Indices: 40287--40342 Score: 76
Period size: 27 Copynumber: 2.1 Consensus size: 27
40277 TGTCGATGAT
* *
40287 TCTGACGACTCTGGTGACGACCACGAC
1 TCTGACGACTCTGGCGACGACCACAAC
* *
40314 TCTGCCGACTCTGGCGACGACGACAAC
1 TCTGACGACTCTGGCGACGACCACAAC
40341 TC
1 TC
40343 AGATGATGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.21, C:0.36, G:0.25, T:0.18
Consensus pattern (27 bp):
TCTGACGACTCTGGCGACGACCACAAC
Left flanking sequence: Indices 39787 -- 40286
ACAAATACTACACGGGCTCGCCCGCGGTAGTGGGCAAGATCCTCCACCACAAGTACGACGACGCC
TACGCCAACTCGGTGGTTTCTGCCTACACTTCTTTGTACGACGAAACCAACGGCAAGGTGCCGCT
GACCCGGATTTCTTTGTGGAAGAAGGGCGACGACTTTGACAGCGACTATGACAGCCCCGATGACA
GAAACTCCGCTGACGAAAAGGATGATTCAGGTGACGAGTCTGCTGATGACTCGGCCGATGACTCA
CCTGATGACCACTCCGATGACGACTCCGACGACGACTCCGACGACGAGGGTGTCTCGCGTCGCTC
GAAGCGTTCCACGAGACGCATGAAGATCATCAAGCGGGACGACGACTCCGACGATTCTGGTGATG
ATGACTCTGGTGATGACCAGTCTGACGATGAGTCTGACGACGATCTTGACACTCGCAAGATTGCC
AGAAAAGTCACCCGTCGTTCCAGAAAGATCAAGCGTGTCGATGAT
Right flanking sequence: Indices 40343 -- 40842
AGATGATGACTCCGACGACGACCTCAAGCGAGTGAAGGTTCGGAAGTTGACCCGTCGTTCCAAAC
ACATCAAGCGTGACGAATCGGACGACGAGTCTGCGGACGACAACAGCGTTGACGAGAACTCCGCT
GACGACAACTCGGACGACTCTGGCGACGACTCTGATGATGATCTCGCTCGTAGAGTGACCAAAAA
GGCTCGCCGTAAGGTTGCTAAGCGTGGAGACGACTCCGACGACGACTCCGCTGACGACTCTGTTG
ATGACAACTCCGACGACGACCACTCTGACGACAACTCTGATGACGAAGATGACCTCCGCAAGAGA
GCCATGAATATCGGCCGCCGTGGACGTTTTGCCAAGCGGAGCAAGATGGTTATTCGTGATGACCA
CCAGTCCGACACCGATAACGACGGCGTTGACACCGACAATGATGGAGACTCTGACAACGACTCCA
ACAACAACAACAACAACAACTCTGGTGGCAGCGGTAACTCTGGAA
Found at i:40644 original size:39 final size:39
Alignment explanation
Indices: 40570--40646 Score: 95
Period size: 39 Copynumber: 2.0 Consensus size: 39
40560 CGTGGAGACG
* *
40570 ACTCCGACGACGACTCCGCTGACGACTCTGTTGATGACA
1 ACTCCGACGACGACTCCGCTGACGACACTGCTGATGACA
*
40609 ACTCCGACGACGAC-CACTCTGACGACAACT-CTGATGAC
1 ACTCCGACGACGACTC-CGCTGACGAC-ACTGCTGATGAC
40647 GAAGATGACC
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
38 1 0.03
39 30 0.91
40 2 0.06
ACGTcount: A:0.26, C:0.35, G:0.21, T:0.18
Consensus pattern (39 bp):
ACTCCGACGACGACTCCGCTGACGACACTGCTGATGACA
Left flanking sequence: Indices 40070 -- 40569
CTCCGACGACGACTCCGACGACGAGGGTGTCTCGCGTCGCTCGAAGCGTTCCACGAGACGCATGA
AGATCATCAAGCGGGACGACGACTCCGACGATTCTGGTGATGATGACTCTGGTGATGACCAGTCT
GACGATGAGTCTGACGACGATCTTGACACTCGCAAGATTGCCAGAAAAGTCACCCGTCGTTCCAG
AAAGATCAAGCGTGTCGATGATTCTGACGACTCTGGTGACGACCACGACTCTGCCGACTCTGGCG
ACGACGACAACTCAGATGATGACTCCGACGACGACCTCAAGCGAGTGAAGGTTCGGAAGTTGACC
CGTCGTTCCAAACACATCAAGCGTGACGAATCGGACGACGAGTCTGCGGACGACAACAGCGTTGA
CGAGAACTCCGCTGACGACAACTCGGACGACTCTGGCGACGACTCTGATGATGATCTCGCTCGTA
GAGTGACCAAAAAGGCTCGCCGTAAGGTTGCTAAGCGTGGAGACG
Right flanking sequence: Indices 40647 -- 41146
GAAGATGACCTCCGCAAGAGAGCCATGAATATCGGCCGCCGTGGACGTTTTGCCAAGCGGAGCAA
GATGGTTATTCGTGATGACCACCAGTCCGACACCGATAACGACGGCGTTGACACCGACAATGATG
GAGACTCTGACAACGACTCCAACAACAACAACAACAACAACTCTGGTGGCAGCGGTAACTCTGGA
AGTAGCAACAACCAACTGAGTGGTGCTGGCACTCTCAAGGTTAAGGGCCTTGTGGCTGGCGCCGC
CATCGGGGCTGGTCTCCTTCTTTTGTAGTGGAACTACGACTGTTTGATTTTTAGTTTAGCACATG
TGTCTCTTGTTTATTGAATGGGAAAAGATAAAATCCAAGAATCGTAGGCTTAGGAACTAACTAGC
GTCACTTATTTACTCTTTTTGTTCTACCTTGTTTCTCATTTGCAACCATTTTGCAGCCATTGGGC
GATCTTATCTGAGCCGCACAGATGCGAGATGGCCAAATAACAACC
Found at i:66211 original size:13 final size:13
Alignment explanation
Indices: 66193--66245 Score: 88
Period size: 13 Copynumber: 4.1 Consensus size: 13
66183 GTTCTTCACA
*
66193 CTGGCTGCAAACC
1 CTGGCTGCAAACT
66206 CTGGCTGCAAACT
1 CTGGCTGCAAACT
*
66219 CTGGCTGCAGACT
1 CTGGCTGCAAACT
66232 CTGGCTGCAAACT
1 CTGGCTGCAAACT
66245 C
1 C
66246 CCGGCTTTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
13 37 1.00
ACGTcount: A:0.21, C:0.34, G:0.25, T:0.21
Consensus pattern (13 bp):
CTGGCTGCAAACT
Left flanking sequence: Indices 65693 -- 66192
AAGTACTACGGGGACGTGGTGGACGAGGTGGAGATTGGCATGGGCTTGGGCAGAATCTGCTGCTA
GCCTGGTGCAGCGGTAGATTACCTCACTAGAATACACATATGGTTTCATGTTTCATGTATCATTC
ATTCATTATATAGTTAGCAGCAGCTCTTCTTCGATTTGCAGCCACATTCGCACGAGGTGGAGCCT
GCACCGGCACACGAAGCACACTTGCACGCACAGGCGTCGGAGCCACCGCAAGAGGCGCCGCAGTA
GTTGATCATCTCAGTTCTCATAGTGATTTGTGTTTGTTGAATTGATTGATTTCTCGAAACATTGG
CCCTGGCTTTATACCGTTGCGTTCTTTTCGCCTCGTGCAGGTGCGGGCGTTGTGCCTGGCTTGGC
ACATATGAGAGATTTGTGCGAGCGTGGTTTATGCTGTGCGGGCATTCTGCGGGTGGCAGGGATAT
TCTTTGGTGTACTATGCGGGGTAGCTTCCGTCTATGTTCTTCACA
Right flanking sequence: Indices 66246 -- 66745
CCGGCTTTATTCTCACTGCACTGTAGGTCAGTGTGTAAACACACACCCCTCTAACCAAGATATAA
CCAAGCATACCAACCCAAACTACACAACAAACAGTCCTAGCGTTACTTCTATTCATTATCATTAC
CTAGTTACCAGAACTTCAGCGCCAACACCAAGAAGATCAAGATGATCAACACCGCGATAATCGCG
TACGAAATAAACTTGTTCGCCACTAGCCGACGGCCCATGGTTTTCAATGTGTTGACCGAACGGTC
CACATACAGCTCTGCTTGGGCCAACGTGTTGCGCGACCCCTGGATCTGGTCCCGCTGGTAGGTCA
AGTCGTTGAGGATCCCCAGCCCAATCTGCTCGGTCTCAAGCGCCACGCGCTGCGAGTCCTGCAAT
CGCTGCAGCAGCCGTTCCAACAGCAGGTTGTTCTGCAACAATTGGCGGCGCTGGTCAGCGCTGGC
ATCCCCATCATCGTCCCGGTAGCGCCCCCCGAACAACTCGGCGCG
Found at i:70700 original size:33 final size:35
Alignment explanation
Indices: 70616--70701 Score: 86
Period size: 33 Copynumber: 2.5 Consensus size: 35
70606 CCCCACGGGG
* * **
70616 GTGGTGGTCGGGACAGCGGCAGCCCCAGCAGCTGGG
1 GTGGTGGTCGGGGCAGCGG-AGCCCCAGCAGCCGCA
***
70652 GTGGTGGTTTTGGCAGC-G-GCCCCAGCAGCCGCA
1 GTGGTGGTCGGGGCAGCGGAGCCCCAGCAGCCGCA
70685 GTGGTGGTCGGGGCAGC
1 GTGGTGGTCGGGGCAGC
70702 AGCACCGGCC
Statistics
Matches: 40, Mismatches: 10, Indels: 3
0.75 0.19 0.06
Matches are distributed among these distances:
33 26 0.65
35 1 0.03
36 13 0.32
ACGTcount: A:0.12, C:0.27, G:0.47, T:0.15
Consensus pattern (35 bp):
GTGGTGGTCGGGGCAGCGGAGCCCCAGCAGCCGCA
Left flanking sequence: Indices 70116 -- 70615
TCACCAAGAAGTACTTGGGGATGTGGTTGGCGGACCCCGCGTTGTGGCCACCGCCGCCGCCCGCA
GTGGGCAACCCAGAGGCCGCAGTGCTCGATCTGACCACACGACTGGTGATAAACGTGAGCGACCG
CGTGGCCGGGTCGTTCTCCACCCCGCCAGCGGGAGGCACAGTGGTGTAGGGCGACCCCCCACCGG
TACCGGCGGGCTTGTCCGTCTCGTCGTCAGCGGTGCCGGTAGCAGCAGCCGCAGCAGCAGGGGTG
TCAGTGGCCCCAGCAGCGCCAGCAGCGGCAGGAGGAGTGGTGGTTTTAGCAGTGGTCTTGGTGTC
AGTGTCCGCAGCAGCCGCGGGGAGCGTATCGGTGTCGGCAGCAGCCCCGGCAGCGGGAGTAGTGG
TGGTTTTTCTACCCGTGGTGGTAGCGGCTAACGCGCCAGCAGGGGTGGTGGTGGTCTTAGCAGCA
GCACCGGCCGCAGGCGTGGTTTCAGCCGCAGCAGCCCCCACGGGG
Right flanking sequence: Indices 70702 -- 71201
AGCACCGGCCGCGGGGACAACGTCAGGACCAGCACCAGCGGCAGGAGCAGCAGCCACAGCAGCGG
GAGCAGGGGCTGCGGCACCCACGGCAGGCACGTCAGCGGCAGACACCACGGCAGCAAGAAGAACC
AAAGCGGAGAATCTCATGGCTGGAGAAGGTAGCAAGCGAGCGAGCGAAAGAGAAAGCGAAAGTGA
AGCAGTTAGCACGAAAGCACCAGATAACCTTGATCGATGTTCTAAGCCTTGTCTTTTTTTGGACC
ACCGTGGGCTGTCTGCAGGAATCGAAAAATCAGGTTCATGTCAAACGCGTAGCGAGGCGTCGTGT
GCCGCCCATATTATTTAGGCTTTCCCGATCAAAGGGGCTCTGTTTTCCACATAGCAACTGACTTT
TTTTTGGTGAGGCAACAGTGAGATGAGCTCGAATGGGTTCACTCAGGCCCAGTGGTCACCCTGGG
TGTGGTGGTGTGGTGCAATGGCGGCGGTGGCCGCGGGGGTTAAGG
Found at i:77558 original size:13 final size:13
Alignment explanation
Indices: 77542--77573 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
77532 GAGACTAGCG
77542 GTTGAGACTGATA
1 GTTGAGACTGATA
*
77555 GTTGACACTGATA
1 GTTGAGACTGATA
77568 GTTGAG
1 GTTGAG
77574 CCCAGTAGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.28, C:0.09, G:0.31, T:0.31
Consensus pattern (13 bp):
GTTGAGACTGATA
Left flanking sequence: Indices 77042 -- 77541
AGCAGCTCTTGTACTTTTTGGACCAGAAGTTCAGTGATCCGCAATTGCAAACCCCCGCGGAGGTG
CTTGAGCTTGCCCGGTTGATGTACGCCTACGAGCTTGTGCTCAACCTGTACTGTGTGGCCGAGTT
CAAAAAGGAGATGACGTACGACTTTCTGCCGGTGTTGAACCACCTCGAGAAGGTGGCGGAGACCC
AGCGGGGCCGCGAGATTGCCGAGAAGAACATCGCCTCCATCGCAGAGAGTAACGCCAATGCCAAG
ACGAACGGGAAGCGGAAAGCGCCCGTGAAGAAGGCCCCGGTGAAGAAGGTTGCCAAGGGGCGGGG
TGCCCTCGACAGTTTCTTCAAAGCAGCGTAGGAGACTGACTAGACGAACGGTCTGGCATAGGCGA
ATACCGTGGCTGGTGAGGTTATGACTGGCCTGAGTTTGACCCAACCGGCTAAGCCCAATTACTAA
CACTATTGCTTGAGACGTGGTTAAGATTAGTAGTTGAGACTAGCG
Right flanking sequence: Indices 77574 -- 78073
CCCAGTAGTCGACACTAGTAGTCACTTCCATCAACTGGGCCATGCGGCTTCGAGTGACTTAGTCG
CCTACCAATTAGCTAGGAAATATAGCCCCTACTAATCTAAAATAGACACAGCCTACCCACACCAT
TCATGAGTGCATTACTATTTACATTCGGTTTATTTTTTGTCGTTGGCCTTGACCCCCTTGTAGAG
AGACATCCCCAGCGCCATCAACCCGCCAAGATCGCCCAAGTTCAGGGGAATCACCACGGTGTTGG
TCTCCTTGGCCAACTTGCCGAACTCCTTGATGTAGTCCTGGGCCACCAGCAACTGCACGGCGTTG
TCGCCACCAGGCGAGTTCTCAATGGCGTCGGCCACCTTGCGAATACCCTCAGCGGTAGCCTTCAG
CTTCAAGAGAATCTGCTCCGCATTACCCTTCGCCTCGTTGATCTGCTCTTGCATCTTGGCCTCGG
ACGCCAAAATCACCGCCTGCTTCTCACCCTCGGAGATGTTGATCT
Found at i:80586 original size:13 final size:13
Alignment explanation
Indices: 80568--80593 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
80558 GATACGACAT
80568 TTTGCAGCCACCG
1 TTTGCAGCCACCG
80581 TTTGCAGCCACCG
1 TTTGCAGCCACCG
80594 AAATCTAGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.38, G:0.23, T:0.23
Consensus pattern (13 bp):
TTTGCAGCCACCG
Left flanking sequence: Indices 80068 -- 80567
TTGAACAAGAACCGCGAGCTTATCCAGCTCCTGAAGAACGGAGGGTTGCCCATTGACGCGGGCCA
GTTGGTGGAGTTGTGCTTGGCGTCCAACAAGTACGTGGACGCACTCACCGACTTGATGAACGGAG
AGCTCGAGAAGTGGGAGGCGGCTCACTACAACCCGCTTTTGGAGGGGATGGCCCTGCGCGAGGAG
CACGCGGTGCGGGTCGAGGAGGAGCAAACCGAGCCTACGGTGGGCTCGAAGACGTTGCCTATGGA
GTAATGGAGTCTTTCACAGTGGCGCTGGCCACACCACCACTTTAGCGATTGGCCTCGAATTGAGT
TTGCAGGCCAGATCGTGATTGAATCCAATTAGGTTAATTTTTATCTATTTGATTCTATACCTTGC
ATTTACGGGGCCGTTTGTTGACAGGACGATTGACAGTTGGCCCACCCCTGCTTCGTGACAGATTG
CCTGATCGGTTTCGCATTTCCGCTGCCAAGCCTCGGATACGACAT
Right flanking sequence: Indices 80594 -- 81093
AAATCTAGCAAACCCCATTTTCTATAACCTTGCAAATTCTAATACAATTAAAAGATTAATTAGTC
TAAAGTTTGGCGTCGCCCAACAGGCGCTCCTTGTTTTTGTTGATGATGTCCACCAAGTAGGCAAA
CCGCACCGAGTCCACCGATAACTGCGCCTGGACCACCGACTCCAAAAAGTCGGCCACCACCCGCA
AGTCCTTGGGCTGCATCATCTGAACGAACGCCTTGGTCTTGGCCTTGTTCTTGAAGATCTTGACC
AAGTTCAAGTGGTTCAAGTAGTACAAGTCCAGCAACAAGTATTGTTTGTTGATCAGCTCCACCGG
CTGCTGGTCGCGCAGAGTCTTGATCACGTACTTGAGCAAGTTCTTGGTGGTGGGGTACCGGATGT
CGTTCTCGTCGATGGGCACGTTGGGCTTTTTGGGGTCGTTCTCCTGGATCACCGCGGTGTCGTCG
CGCGGGTTGTACGTCATCAACGACCGGATCAAGTTGACGTACAGC
Found at i:85027 original size:13 final size:13
Alignment explanation
Indices: 85011--85059 Score: 80
Period size: 13 Copynumber: 3.8 Consensus size: 13
85001 GCCCAGCTTC
* *
85011 ACCACCCATACTT
1 ACCACCCAAACTA
85024 ACCACCCAAACTA
1 ACCACCCAAACTA
85037 ACCACCCAAACTA
1 ACCACCCAAACTA
85050 ACCACCCAAA
1 ACCACCCAAA
85060 TCACCACCAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.43, C:0.47, G:0.00, T:0.10
Consensus pattern (13 bp):
ACCACCCAAACTA
Left flanking sequence: Indices 84511 -- 85010
GAGGGGCGCGACTGCGGGGACAGCTGATCGCACGCGGGTTTCACAAGTGGTTCCCCGCCATCGTA
GGCGTCTACTGTGTCTAGTTTCACTGGCTACGTCATTGGGTTTGGATGTTTGCTTACCGTACAAA
CCCCGTTGCAGGAAAAGGAACGCGCCAATTGCGGTGGTGTCATACGATGAGGCGCGATCCATAGT
GGAATGTCGTGTAGAGGAGTGGAAGGTGCAATTGGTGGTTGGCGGGTGCTTGGTTCTACGGGGGA
CTACCGTATCTGGAAAGAAGCCACAGTGTTGCAGGGGTGACATGTGTTATCAGGATTTGCGCGTG
TGACAAGTGCTAGCGTAATCGGGCGTAGAGTCTGAATGGTGGACTCGGAGATGTGGAGGCTAAGG
GCCGACACGATCTGGGCAGCACTGTGCGGGAGCCAATGAGGGCTGAGGAATTGAGTAGAACCAGC
CCACCTGAGTCAACGTAACCGAGTCATTTTAAATAGCCCAGCTTC
Right flanking sequence: Indices 85060 -- 85559
TCACCACCAACCTCACCACCGAACTCACCACTTAATTAACAGTCTGAACTCTCCGTTCGTGCTCA
CCACTCTGTGCTCACCCTACGCTCTACCTGCCTTCCGTAACCTACACTTAACTCCACCCATCACC
TGATCAGCTCACTCGTTTCTCGTTTATAAATAACTGTCTAGAACTTAGCCTTGTCCGGGTTCTCA
AACAAGTTGCCGTCGCCGTACAACACGTCAAAGGTGTCGCGGAAGTGCTTCAACGCCATGGGACG
CTTCAACTTGATGGTGGGAGTCAAAATGTCCCCACCAGGCATCCCCAACGGGTTGATGCCCGCCA
CCACGTTCTTGATCTTCTCGTACAGCTGCAATTTGTCGCCGACAGCCGCGTTGAGCACGGATATG
ATCTTCTTCTTCGCGTCGTTGTTGCCGTTGATGTACTCGCACGCCTCCTGGTGCGAGCCAAACTG
CTGCCCAAGCACCTTGCCGTAGTACTGGAGCGCCACCGTGTCCTC
Found at i:85040 original size:26 final size:25
Alignment explanation
Indices: 85011--85067 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 25
85001 GCCCAGCTTC
* *
85011 ACCACCCATACTTACCACCCAAACTA
1 ACCACCCAAACTAACCACCCAAA-TA
*
85037 ACCACCCAAACTAACCACCCAAATC
1 ACCACCCAAACTAACCACCCAAATA
85062 ACCACC
1 ACCACC
85068 AACCTCACCA
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
25 7 0.25
26 21 0.75
ACGTcount: A:0.40, C:0.49, G:0.00, T:0.11
Consensus pattern (25 bp):
ACCACCCAAACTAACCACCCAAATA
Left flanking sequence: Indices 84511 -- 85010
GAGGGGCGCGACTGCGGGGACAGCTGATCGCACGCGGGTTTCACAAGTGGTTCCCCGCCATCGTA
GGCGTCTACTGTGTCTAGTTTCACTGGCTACGTCATTGGGTTTGGATGTTTGCTTACCGTACAAA
CCCCGTTGCAGGAAAAGGAACGCGCCAATTGCGGTGGTGTCATACGATGAGGCGCGATCCATAGT
GGAATGTCGTGTAGAGGAGTGGAAGGTGCAATTGGTGGTTGGCGGGTGCTTGGTTCTACGGGGGA
CTACCGTATCTGGAAAGAAGCCACAGTGTTGCAGGGGTGACATGTGTTATCAGGATTTGCGCGTG
TGACAAGTGCTAGCGTAATCGGGCGTAGAGTCTGAATGGTGGACTCGGAGATGTGGAGGCTAAGG
GCCGACACGATCTGGGCAGCACTGTGCGGGAGCCAATGAGGGCTGAGGAATTGAGTAGAACCAGC
CCACCTGAGTCAACGTAACCGAGTCATTTTAAATAGCCCAGCTTC
Right flanking sequence: Indices 85068 -- 85567
AACCTCACCACCGAACTCACCACTTAATTAACAGTCTGAACTCTCCGTTCGTGCTCACCACTCTG
TGCTCACCCTACGCTCTACCTGCCTTCCGTAACCTACACTTAACTCCACCCATCACCTGATCAGC
TCACTCGTTTCTCGTTTATAAATAACTGTCTAGAACTTAGCCTTGTCCGGGTTCTCAAACAAGTT
GCCGTCGCCGTACAACACGTCAAAGGTGTCGCGGAAGTGCTTCAACGCCATGGGACGCTTCAACT
TGATGGTGGGAGTCAAAATGTCCCCACCAGGCATCCCCAACGGGTTGATGCCCGCCACCACGTTC
TTGATCTTCTCGTACAGCTGCAATTTGTCGCCGACAGCCGCGTTGAGCACGGATATGATCTTCTT
CTTCGCGTCGTTGTTGCCGTTGATGTACTCGCACGCCTCCTGGTGCGAGCCAAACTGCTGCCCAA
GCACCTTGCCGTAGTACTGGAGCGCCACCGTGTCCTCGATGCCAA
Found at i:85067 original size:12 final size:12
Alignment explanation
Indices: 85009--85090 Score: 58
Period size: 13 Copynumber: 6.6 Consensus size: 12
84999 TAGCCCAGCT
*
85009 TCACCACCCATAC
1 TCACCACCCA-AA
*
85022 TTACCACCCAAA
1 TCACCACCCAAA
*
85034 CTAACCACCCAAA
1 -TCACCACCCAAA
*
85047 CTAACCACCCAAA
1 -TCACCACCCAAA
*
85060 TCACCA-CCAACC
1 TCACCACCCAA-A
* *
85072 TCACCACCGAAC
1 TCACCACCCAAA
85084 TCACCAC
1 TCACCAC
85091 TTAATTAACA
Statistics
Matches: 60, Mismatches: 6, Indels: 7
0.82 0.08 0.10
Matches are distributed among these distances:
11 4 0.07
12 20 0.33
13 36 0.60
ACGTcount: A:0.38, C:0.50, G:0.01, T:0.11
Consensus pattern (12 bp):
TCACCACCCAAA
Left flanking sequence: Indices 84509 -- 85008
GAGAGGGGCGCGACTGCGGGGACAGCTGATCGCACGCGGGTTTCACAAGTGGTTCCCCGCCATCG
TAGGCGTCTACTGTGTCTAGTTTCACTGGCTACGTCATTGGGTTTGGATGTTTGCTTACCGTACA
AACCCCGTTGCAGGAAAAGGAACGCGCCAATTGCGGTGGTGTCATACGATGAGGCGCGATCCATA
GTGGAATGTCGTGTAGAGGAGTGGAAGGTGCAATTGGTGGTTGGCGGGTGCTTGGTTCTACGGGG
GACTACCGTATCTGGAAAGAAGCCACAGTGTTGCAGGGGTGACATGTGTTATCAGGATTTGCGCG
TGTGACAAGTGCTAGCGTAATCGGGCGTAGAGTCTGAATGGTGGACTCGGAGATGTGGAGGCTAA
GGGCCGACACGATCTGGGCAGCACTGTGCGGGAGCCAATGAGGGCTGAGGAATTGAGTAGAACCA
GCCCACCTGAGTCAACGTAACCGAGTCATTTTAAATAGCCCAGCT
Right flanking sequence: Indices 85091 -- 85590
TTAATTAACAGTCTGAACTCTCCGTTCGTGCTCACCACTCTGTGCTCACCCTACGCTCTACCTGC
CTTCCGTAACCTACACTTAACTCCACCCATCACCTGATCAGCTCACTCGTTTCTCGTTTATAAAT
AACTGTCTAGAACTTAGCCTTGTCCGGGTTCTCAAACAAGTTGCCGTCGCCGTACAACACGTCAA
AGGTGTCGCGGAAGTGCTTCAACGCCATGGGACGCTTCAACTTGATGGTGGGAGTCAAAATGTCC
CCACCAGGCATCCCCAACGGGTTGATGCCCGCCACCACGTTCTTGATCTTCTCGTACAGCTGCAA
TTTGTCGCCGACAGCCGCGTTGAGCACGGATATGATCTTCTTCTTCGCGTCGTTGTTGCCGTTGA
TGTACTCGCACGCCTCCTGGTGCGAGCCAAACTGCTGCCCAAGCACCTTGCCGTAGTACTGGAGC
GCCACCGTGTCCTCGATGCCAATGATCCCCACAAGGTAGTTCTGC
Found at i:85077 original size:24 final size:24
Alignment explanation
Indices: 85009--85090 Score: 74
Period size: 26 Copynumber: 3.3 Consensus size: 24
84999 TAGCCCAGCT
* *
85009 TCACCACCCATACTTACCACCCAAA
1 TCACCA-CCAAACTAACCACCCAAA
*
85034 CTAACCACCCAAACTAACCACCCAAA
1 -TCACCA-CCAAACTAACCACCCAAA
* * * *
85060 TCACCACCAACCTCACCACCGAAC
1 TCACCACCAAACTAACCACCCAAA
85084 TCACCAC
1 TCACCAC
85091 TTAATTAACA
Statistics
Matches: 48, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
24 21 0.44
25 5 0.10
26 22 0.46
ACGTcount: A:0.38, C:0.50, G:0.01, T:0.11
Consensus pattern (24 bp):
TCACCACCAAACTAACCACCCAAA
Left flanking sequence: Indices 84509 -- 85008
GAGAGGGGCGCGACTGCGGGGACAGCTGATCGCACGCGGGTTTCACAAGTGGTTCCCCGCCATCG
TAGGCGTCTACTGTGTCTAGTTTCACTGGCTACGTCATTGGGTTTGGATGTTTGCTTACCGTACA
AACCCCGTTGCAGGAAAAGGAACGCGCCAATTGCGGTGGTGTCATACGATGAGGCGCGATCCATA
GTGGAATGTCGTGTAGAGGAGTGGAAGGTGCAATTGGTGGTTGGCGGGTGCTTGGTTCTACGGGG
GACTACCGTATCTGGAAAGAAGCCACAGTGTTGCAGGGGTGACATGTGTTATCAGGATTTGCGCG
TGTGACAAGTGCTAGCGTAATCGGGCGTAGAGTCTGAATGGTGGACTCGGAGATGTGGAGGCTAA
GGGCCGACACGATCTGGGCAGCACTGTGCGGGAGCCAATGAGGGCTGAGGAATTGAGTAGAACCA
GCCCACCTGAGTCAACGTAACCGAGTCATTTTAAATAGCCCAGCT
Right flanking sequence: Indices 85091 -- 85590
TTAATTAACAGTCTGAACTCTCCGTTCGTGCTCACCACTCTGTGCTCACCCTACGCTCTACCTGC
CTTCCGTAACCTACACTTAACTCCACCCATCACCTGATCAGCTCACTCGTTTCTCGTTTATAAAT
AACTGTCTAGAACTTAGCCTTGTCCGGGTTCTCAAACAAGTTGCCGTCGCCGTACAACACGTCAA
AGGTGTCGCGGAAGTGCTTCAACGCCATGGGACGCTTCAACTTGATGGTGGGAGTCAAAATGTCC
CCACCAGGCATCCCCAACGGGTTGATGCCCGCCACCACGTTCTTGATCTTCTCGTACAGCTGCAA
TTTGTCGCCGACAGCCGCGTTGAGCACGGATATGATCTTCTTCTTCGCGTCGTTGTTGCCGTTGA
TGTACTCGCACGCCTCCTGGTGCGAGCCAAACTGCTGCCCAAGCACCTTGCCGTAGTACTGGAGC
GCCACCGTGTCCTCGATGCCAATGATCCCCACAAGGTAGTTCTGC
Found at i:89969 original size:9 final size:9
Alignment explanation
Indices: 89955--89994 Score: 80
Period size: 9 Copynumber: 4.4 Consensus size: 9
89945 GTCTAAAGTT
89955 CTACCAGTG
1 CTACCAGTG
89964 CTACCAGTG
1 CTACCAGTG
89973 CTACCAGTG
1 CTACCAGTG
89982 CTACCAGTG
1 CTACCAGTG
89991 CTAC
1 CTAC
89995 TGCAGTGTCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 31 1.00
ACGTcount: A:0.23, C:0.35, G:0.20, T:0.23
Consensus pattern (9 bp):
CTACCAGTG
Left flanking sequence: Indices 89455 -- 89954
TACACCCCCGCCTCTACGTACCCTGCCTGCACCACGCCCGCCTGAGTCCGCCTTCCGTTCTCAGC
CTGGGACGGCTGCAAAGTAACACGTCCGCATCAAACGCGCATACTGTAGAATTTCAACTCAAATC
GACACGTCAATAGATCACCATGGTAAGTCGTTTGCGCCACACCACCGTCCTTTCAGCAAATACTA
ACGCCCCAGGCCCTTCAGACTCCCAAGCAAAGAGCTGCCAACGCCCGCTTCGAAAAGAAAAACGT
CAACCAGTGGGGTAAGAAGAAGGTTGTCAAGCAGAAGACCGAGTTCCCGATCTCGAGAGGATGGA
TCGCCGCGTTGGTGTTCTTGGTGTGCGGTGGTGCCGTGTTGGAGATCATCCGCTTGCTCTTCTAA
GACGCCGACCCGGTTTCACGCGTGTAGCGTGCCATGTGTTGTACGGGTCATGTGCATGAGTCCGA
GTGCTATCATGAGCTACCAGCTCCGATTACAGGAGGTCTAAAGTT
Right flanking sequence: Indices 89995 -- 90494
TGCAGTGTCACTTGGGTGACAAAGTGTACTACCCCAGCACCACTTGGGTGACAGGTGTACTATGC
CAGTGCCCAGTAGTGCTGTAGTAGTGCCCATTGCCCAGTAGTGCTTTAGTAGTGCCCCAGTACCA
GTGGCTTTGCCGCATTCCGTCCCGTGCCCATGACGCTGTACCACACATGTCTCACTACACCGTGA
TCCCACCGATCCACCCTTCACCCATTGTATTATAGTGCTGTTTATTTTAGTTTAATAAAAACAAG
CTTATGAAAGCTCAAAACAAGCTTATGAAGCCTTAAACAAGCCTACGAAAAGCTTTAACCAAGAA
TATGAAAAGCTTAACAAGCCTATGAAGGTGCCTGCACCCGTTCCTCCAAACACTCCACCAGGTCT
GGCTCGATCACCACCCCGTCGAGCAAGTCGATCTCGGCCACCGACCCCACCCGTGGCGGCACCGG
CTCCGCAAACGGCTTGACCACCGTCACGTCGGACGAGCCCCAGAG
Found at i:90094 original size:28 final size:28
Alignment explanation
Indices: 90063--90116 Score: 99
Period size: 28 Copynumber: 1.9 Consensus size: 28
90053 ACTATGCCAG
90063 TGCCCAGTAGTGCTGTAGTAGTGCCCAT
1 TGCCCAGTAGTGCTGTAGTAGTGCCCAT
*
90091 TGCCCAGTAGTGCTTTAGTAGTGCCC
1 TGCCCAGTAGTGCTGTAGTAGTGCCC
90117 CAGTACCAGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.17, C:0.26, G:0.28, T:0.30
Consensus pattern (28 bp):
TGCCCAGTAGTGCTGTAGTAGTGCCCAT
Left flanking sequence: Indices 89563 -- 90062
CTGTAGAATTTCAACTCAAATCGACACGTCAATAGATCACCATGGTAAGTCGTTTGCGCCACACC
ACCGTCCTTTCAGCAAATACTAACGCCCCAGGCCCTTCAGACTCCCAAGCAAAGAGCTGCCAACG
CCCGCTTCGAAAAGAAAAACGTCAACCAGTGGGGTAAGAAGAAGGTTGTCAAGCAGAAGACCGAG
TTCCCGATCTCGAGAGGATGGATCGCCGCGTTGGTGTTCTTGGTGTGCGGTGGTGCCGTGTTGGA
GATCATCCGCTTGCTCTTCTAAGACGCCGACCCGGTTTCACGCGTGTAGCGTGCCATGTGTTGTA
CGGGTCATGTGCATGAGTCCGAGTGCTATCATGAGCTACCAGCTCCGATTACAGGAGGTCTAAAG
TTCTACCAGTGCTACCAGTGCTACCAGTGCTACCAGTGCTACTGCAGTGTCACTTGGGTGACAAA
GTGTACTACCCCAGCACCACTTGGGTGACAGGTGTACTATGCCAG
Right flanking sequence: Indices 90117 -- 90616
CAGTACCAGTGGCTTTGCCGCATTCCGTCCCGTGCCCATGACGCTGTACCACACATGTCTCACTA
CACCGTGATCCCACCGATCCACCCTTCACCCATTGTATTATAGTGCTGTTTATTTTAGTTTAATA
AAAACAAGCTTATGAAAGCTCAAAACAAGCTTATGAAGCCTTAAACAAGCCTACGAAAAGCTTTA
ACCAAGAATATGAAAAGCTTAACAAGCCTATGAAGGTGCCTGCACCCGTTCCTCCAAACACTCCA
CCAGGTCTGGCTCGATCACCACCCCGTCGAGCAAGTCGATCTCGGCCACCGACCCCACCCGTGGC
GGCACCGGCTCCGCAAACGGCTTGACCACCGTCACGTCGGACGAGCCCCAGAGCGGCGCCGCCTC
GTCAAACACCGCAAACGCCACGTTGTTGTTGTTGACCAAGTTCAAAAACGCAAAACACGTGTCGA
TCTCGGCCTCGGCCATCGGGTCGGCGCCCGTGGGCGTCGGCAGCG
Found at i:90125 original size:28 final size:28
Alignment explanation
Indices: 90059--90126 Score: 84
Period size: 28 Copynumber: 2.4 Consensus size: 28
90049 GTGTACTATG
*
90059 CCAGTGCCCAGTAGTGCTGTAGTAGTGC
1 CCAGTGACCAGTAGTGCTGTAGTAGTGC
* * *
90087 CCATTGCCCAGTAGTGCTTTAGTAGTGCC
1 CCAGTGACCAGTAGTGCTGTAGTAGTG-C
90116 CCAGT-ACCAGT
1 CCAGTGACCAGT
90127 GGCTTTGCCG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 30 0.86
29 5 0.14
ACGTcount: A:0.19, C:0.28, G:0.26, T:0.26
Consensus pattern (28 bp):
CCAGTGACCAGTAGTGCTGTAGTAGTGC
Left flanking sequence: Indices 89559 -- 90058
CATACTGTAGAATTTCAACTCAAATCGACACGTCAATAGATCACCATGGTAAGTCGTTTGCGCCA
CACCACCGTCCTTTCAGCAAATACTAACGCCCCAGGCCCTTCAGACTCCCAAGCAAAGAGCTGCC
AACGCCCGCTTCGAAAAGAAAAACGTCAACCAGTGGGGTAAGAAGAAGGTTGTCAAGCAGAAGAC
CGAGTTCCCGATCTCGAGAGGATGGATCGCCGCGTTGGTGTTCTTGGTGTGCGGTGGTGCCGTGT
TGGAGATCATCCGCTTGCTCTTCTAAGACGCCGACCCGGTTTCACGCGTGTAGCGTGCCATGTGT
TGTACGGGTCATGTGCATGAGTCCGAGTGCTATCATGAGCTACCAGCTCCGATTACAGGAGGTCT
AAAGTTCTACCAGTGCTACCAGTGCTACCAGTGCTACCAGTGCTACTGCAGTGTCACTTGGGTGA
CAAAGTGTACTACCCCAGCACCACTTGGGTGACAGGTGTACTATG
Right flanking sequence: Indices 90127 -- 90626
GGCTTTGCCGCATTCCGTCCCGTGCCCATGACGCTGTACCACACATGTCTCACTACACCGTGATC
CCACCGATCCACCCTTCACCCATTGTATTATAGTGCTGTTTATTTTAGTTTAATAAAAACAAGCT
TATGAAAGCTCAAAACAAGCTTATGAAGCCTTAAACAAGCCTACGAAAAGCTTTAACCAAGAATA
TGAAAAGCTTAACAAGCCTATGAAGGTGCCTGCACCCGTTCCTCCAAACACTCCACCAGGTCTGG
CTCGATCACCACCCCGTCGAGCAAGTCGATCTCGGCCACCGACCCCACCCGTGGCGGCACCGGCT
CCGCAAACGGCTTGACCACCGTCACGTCGGACGAGCCCCAGAGCGGCGCCGCCTCGTCAAACACC
GCAAACGCCACGTTGTTGTTGTTGACCAAGTTCAAAAACGCAAAACACGTGTCGATCTCGGCCTC
GGCCATCGGGTCGGCGCCCGTGGGCGTCGGCAGCGGCAGTGCCCG
Found at i:90343 original size:20 final size:21
Alignment explanation
Indices: 90290--90345 Score: 69
Period size: 22 Copynumber: 2.7 Consensus size: 21
90280 TGAAGCCTTA
*
90290 AACAAGCCTACGAAAAGCTTT
1 AACAAGCCTATGAAAAGCTTT
**
90311 AACCAAGAATATGAAAAGC-TT
1 AA-CAAGCCTATGAAAAGCTTT
90332 AACAAGCCTATGAA
1 AACAAGCCTATGAA
90346 GGTGCCTGCA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
20 10 0.34
21 6 0.21
22 13 0.45
ACGTcount: A:0.48, C:0.20, G:0.14, T:0.18
Consensus pattern (21 bp):
AACAAGCCTATGAAAAGCTTT
Left flanking sequence: Indices 89790 -- 90289
GGTGTTCTTGGTGTGCGGTGGTGCCGTGTTGGAGATCATCCGCTTGCTCTTCTAAGACGCCGACC
CGGTTTCACGCGTGTAGCGTGCCATGTGTTGTACGGGTCATGTGCATGAGTCCGAGTGCTATCAT
GAGCTACCAGCTCCGATTACAGGAGGTCTAAAGTTCTACCAGTGCTACCAGTGCTACCAGTGCTA
CCAGTGCTACTGCAGTGTCACTTGGGTGACAAAGTGTACTACCCCAGCACCACTTGGGTGACAGG
TGTACTATGCCAGTGCCCAGTAGTGCTGTAGTAGTGCCCATTGCCCAGTAGTGCTTTAGTAGTGC
CCCAGTACCAGTGGCTTTGCCGCATTCCGTCCCGTGCCCATGACGCTGTACCACACATGTCTCAC
TACACCGTGATCCCACCGATCCACCCTTCACCCATTGTATTATAGTGCTGTTTATTTTAGTTTAA
TAAAAACAAGCTTATGAAAGCTCAAAACAAGCTTATGAAGCCTTA
Right flanking sequence: Indices 90346 -- 90845
GGTGCCTGCACCCGTTCCTCCAAACACTCCACCAGGTCTGGCTCGATCACCACCCCGTCGAGCAA
GTCGATCTCGGCCACCGACCCCACCCGTGGCGGCACCGGCTCCGCAAACGGCTTGACCACCGTCA
CGTCGGACGAGCCCCAGAGCGGCGCCGCCTCGTCAAACACCGCAAACGCCACGTTGTTGTTGTTG
ACCAAGTTCAAAAACGCAAAACACGTGTCGATCTCGGCCTCGGCCATCGGGTCGGCGCCCGTGGG
CGTCGGCAGCGGCAGTGCCCGGCTCAAGTTGGCCCCGTCGAACCGCGGGTCCTCGGGCACCTTCG
TCGGCAAGTCGTACTGGAAACTGTGGGCGCCGTTGAGCGTGGACACCACCTTGAGCCTGTTTTCG
CGGTCGAGCACCGCCAACAAGTTGGCCAGCGCCAGGCTCGCGTGGGCGCCCACCGGAGCGGGAAT
GGACACGAGCGCGCGTGCGTTGGCTCGTGGGATGATCCAGTCGTC
Found at i:91550 original size:21 final size:21
Alignment explanation
Indices: 91508--91550 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
91498 AAGCGGGTGT
*
91508 TGGCGAACCGGTTGGCGTCTG
1 TGGCGAACCGGTTGGCGCCTG
*
91529 TGGCGAACCGGTTGGTGCCTG
1 TGGCGAACCGGTTGGCGCCTG
91550 T
1 T
91551 CGTGTTCAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.09, C:0.23, G:0.42, T:0.26
Consensus pattern (21 bp):
TGGCGAACCGGTTGGCGCCTG
Left flanking sequence: Indices 91008 -- 91507
CCAGAACACCCGGGTGACTACCGCCAGCGTCTTGCCGCGGGTGAACTTGCCCACCAACGCCACCT
CGCGCGGCAACCGGTACAAGTCCCACATGTAGTACGCGTCGCCTCGGGCGCTCACCAGGAGCAAG
TGGAGGTCGTGCGGCAGCAACAGGAGGTGTGACACCCCACCTGGCGGCTTGAACACCGCGAGGGT
GTGCCCGGAGGCGAGGTCCACCACCTTGACGAGCTGGCAGTCGCCGGGCTGCATGTTTTCCGCGG
TCTTCTGGAGCAGCAGCGCCGTCAGAGCCGCGGTCTGGTACAAGAGCCGGCCCACCAGCCGCAGG
ATCAGCAGCGCGCGGTAGTCGGCCAGCGTGCCCTCGGCCACCGCGCGCTTGAGCCGCTTGGAGCT
GGCGGCAGAGAGCCGCACCAATCCGTCGAGTGCCAGCTTGGAGAACAGCAGGAGCACCCGGGCGA
GCAACGGGCCGCGCGGTGGCATTTTGAGCGGGGTGAAGCGGGTGT
Right flanking sequence: Indices 91551 -- 92050
CGTGTTCAGAGTGGCTTCATTGGCCCTGCTCGCGTTCAGCTTGGCTTCACTGGCCCTGGCTGAGT
TGAGCTTGGCTTCTCTGGAGCCATTCGCCGCGTTCGCTGCGCCCACCGCGTTCGCTTCGCCCCTG
GCGTTCAGCTTGGCCTCGCTGCGGAGCTTGACGTGCTCGGCCCGCGCGGGCGAGTACGCCAACCA
CGCACCGTGCACGGCAAACACCGGGACGTTGTGCTTCGTCATCGACGTGGTGACGCTGTGCACGG
GCTCGAGCTTGGCGTTCATCACGTGCACAAGCCCCACCTCGTCGCCCGCGACGATGTAGTGGTCG
GAGACCGCGAGCTCCACCACCTCGTTGCCCACGTCGGCCTCGGCCACGAGCTCGGAGGTGTTCAG
GTCGCTGTAGATGTGGTGCACCTCGAGGCGCGACAGCCGTGCCACCACGAGCAGGAGGTCGGCGG
TGAGGCGCATGTGGGTGATGGGCTGGTGGCTGGAGGCGTCGGAGG
Found at i:91588 original size:30 final size:29
Alignment explanation
Indices: 91546--91608 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 29
91536 CCGGTTGGTG
* *
91546 CCTGTCGTGTTCAGAGTGGCTTCATTGGC
1 CCTGTCGCGTTCAGAGTGGCTTCACTGGC
**
91575 CCTGCTCGCGTTCAGCTTGGCTTCACTGGC
1 CCTG-TCGCGTTCAGAGTGGCTTCACTGGC
91605 CCTG
1 CCTG
91609 GCTGAGTTGA
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 4 0.14
30 25 0.86
ACGTcount: A:0.08, C:0.32, G:0.29, T:0.32
Consensus pattern (29 bp):
CCTGTCGCGTTCAGAGTGGCTTCACTGGC
Left flanking sequence: Indices 91046 -- 91545
GGGTGAACTTGCCCACCAACGCCACCTCGCGCGGCAACCGGTACAAGTCCCACATGTAGTACGCG
TCGCCTCGGGCGCTCACCAGGAGCAAGTGGAGGTCGTGCGGCAGCAACAGGAGGTGTGACACCCC
ACCTGGCGGCTTGAACACCGCGAGGGTGTGCCCGGAGGCGAGGTCCACCACCTTGACGAGCTGGC
AGTCGCCGGGCTGCATGTTTTCCGCGGTCTTCTGGAGCAGCAGCGCCGTCAGAGCCGCGGTCTGG
TACAAGAGCCGGCCCACCAGCCGCAGGATCAGCAGCGCGCGGTAGTCGGCCAGCGTGCCCTCGGC
CACCGCGCGCTTGAGCCGCTTGGAGCTGGCGGCAGAGAGCCGCACCAATCCGTCGAGTGCCAGCT
TGGAGAACAGCAGGAGCACCCGGGCGAGCAACGGGCCGCGCGGTGGCATTTTGAGCGGGGTGAAG
CGGGTGTTGGCGAACCGGTTGGCGTCTGTGGCGAACCGGTTGGTG
Right flanking sequence: Indices 91609 -- 92108
GCTGAGTTGAGCTTGGCTTCTCTGGAGCCATTCGCCGCGTTCGCTGCGCCCACCGCGTTCGCTTC
GCCCCTGGCGTTCAGCTTGGCCTCGCTGCGGAGCTTGACGTGCTCGGCCCGCGCGGGCGAGTACG
CCAACCACGCACCGTGCACGGCAAACACCGGGACGTTGTGCTTCGTCATCGACGTGGTGACGCTG
TGCACGGGCTCGAGCTTGGCGTTCATCACGTGCACAAGCCCCACCTCGTCGCCCGCGACGATGTA
GTGGTCGGAGACCGCGAGCTCCACCACCTCGTTGCCCACGTCGGCCTCGGCCACGAGCTCGGAGG
TGTTCAGGTCGCTGTAGATGTGGTGCACCTCGAGGCGCGACAGCCGTGCCACCACGAGCAGGAGG
TCGGCGGTGAGGCGCATGTGGGTGATGGGCTGGTGGCTGGAGGCGTCGGAGGTGGGTGCCAGCGC
AGCCAGGGTGCGGGCCAGTTTCTTTGCCAGCGCGATGTCGAGGCG
Found at i:91622 original size:30 final size:30
Alignment explanation
Indices: 91562--91633 Score: 92
Period size: 30 Copynumber: 2.4 Consensus size: 30
91552 GTGTTCAGAG
* *
91562 TGGCTTCATTGGCCCTGCTCGCGTTCAGCT
1 TGGCTTCACTGGCCCTGCTCGAGTTCAGCT
*
91592 TGGCTTCACTGGCCCTGGCT-GAGTTGAGCT
1 TGGCTTCACTGGCCCT-GCTCGAGTTCAGCT
*
91622 TGGCTTCTCTGG
1 TGGCTTCACTGG
91634 AGCCATTCGC
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
30 34 0.92
31 3 0.08
ACGTcount: A:0.07, C:0.29, G:0.31, T:0.33
Consensus pattern (30 bp):
TGGCTTCACTGGCCCTGCTCGAGTTCAGCT
Left flanking sequence: Indices 91062 -- 91561
CAACGCCACCTCGCGCGGCAACCGGTACAAGTCCCACATGTAGTACGCGTCGCCTCGGGCGCTCA
CCAGGAGCAAGTGGAGGTCGTGCGGCAGCAACAGGAGGTGTGACACCCCACCTGGCGGCTTGAAC
ACCGCGAGGGTGTGCCCGGAGGCGAGGTCCACCACCTTGACGAGCTGGCAGTCGCCGGGCTGCAT
GTTTTCCGCGGTCTTCTGGAGCAGCAGCGCCGTCAGAGCCGCGGTCTGGTACAAGAGCCGGCCCA
CCAGCCGCAGGATCAGCAGCGCGCGGTAGTCGGCCAGCGTGCCCTCGGCCACCGCGCGCTTGAGC
CGCTTGGAGCTGGCGGCAGAGAGCCGCACCAATCCGTCGAGTGCCAGCTTGGAGAACAGCAGGAG
CACCCGGGCGAGCAACGGGCCGCGCGGTGGCATTTTGAGCGGGGTGAAGCGGGTGTTGGCGAACC
GGTTGGCGTCTGTGGCGAACCGGTTGGTGCCTGTCGTGTTCAGAG
Right flanking sequence: Indices 91634 -- 92133
AGCCATTCGCCGCGTTCGCTGCGCCCACCGCGTTCGCTTCGCCCCTGGCGTTCAGCTTGGCCTCG
CTGCGGAGCTTGACGTGCTCGGCCCGCGCGGGCGAGTACGCCAACCACGCACCGTGCACGGCAAA
CACCGGGACGTTGTGCTTCGTCATCGACGTGGTGACGCTGTGCACGGGCTCGAGCTTGGCGTTCA
TCACGTGCACAAGCCCCACCTCGTCGCCCGCGACGATGTAGTGGTCGGAGACCGCGAGCTCCACC
ACCTCGTTGCCCACGTCGGCCTCGGCCACGAGCTCGGAGGTGTTCAGGTCGCTGTAGATGTGGTG
CACCTCGAGGCGCGACAGCCGTGCCACCACGAGCAGGAGGTCGGCGGTGAGGCGCATGTGGGTGA
TGGGCTGGTGGCTGGAGGCGTCGGAGGTGGGTGCCAGCGCAGCCAGGGTGCGGGCCAGTTTCTTT
GCCAGCGCGATGTCGAGGCGGTGGACGAGGCACAACTGCGAGCCG
Found at i:91686 original size:18 final size:18
Alignment explanation
Indices: 91643--91677 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
91633 GAGCCATTCG
*
91643 CCGCGTTCGCTGCGCCCA
1 CCGCGTTCGCTTCGCCCA
91661 CCGCGTTCGCTTCGCCC
1 CCGCGTTCGCTTCGCCC
91678 CTGGCGTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.03, C:0.51, G:0.26, T:0.20
Consensus pattern (18 bp):
CCGCGTTCGCTTCGCCCA
Left flanking sequence: Indices 91143 -- 91642
GTCGTGCGGCAGCAACAGGAGGTGTGACACCCCACCTGGCGGCTTGAACACCGCGAGGGTGTGCC
CGGAGGCGAGGTCCACCACCTTGACGAGCTGGCAGTCGCCGGGCTGCATGTTTTCCGCGGTCTTC
TGGAGCAGCAGCGCCGTCAGAGCCGCGGTCTGGTACAAGAGCCGGCCCACCAGCCGCAGGATCAG
CAGCGCGCGGTAGTCGGCCAGCGTGCCCTCGGCCACCGCGCGCTTGAGCCGCTTGGAGCTGGCGG
CAGAGAGCCGCACCAATCCGTCGAGTGCCAGCTTGGAGAACAGCAGGAGCACCCGGGCGAGCAAC
GGGCCGCGCGGTGGCATTTTGAGCGGGGTGAAGCGGGTGTTGGCGAACCGGTTGGCGTCTGTGGC
GAACCGGTTGGTGCCTGTCGTGTTCAGAGTGGCTTCATTGGCCCTGCTCGCGTTCAGCTTGGCTT
CACTGGCCCTGGCTGAGTTGAGCTTGGCTTCTCTGGAGCCATTCG
Right flanking sequence: Indices 91678 -- 92177
CTGGCGTTCAGCTTGGCCTCGCTGCGGAGCTTGACGTGCTCGGCCCGCGCGGGCGAGTACGCCAA
CCACGCACCGTGCACGGCAAACACCGGGACGTTGTGCTTCGTCATCGACGTGGTGACGCTGTGCA
CGGGCTCGAGCTTGGCGTTCATCACGTGCACAAGCCCCACCTCGTCGCCCGCGACGATGTAGTGG
TCGGAGACCGCGAGCTCCACCACCTCGTTGCCCACGTCGGCCTCGGCCACGAGCTCGGAGGTGTT
CAGGTCGCTGTAGATGTGGTGCACCTCGAGGCGCGACAGCCGTGCCACCACGAGCAGGAGGTCGG
CGGTGAGGCGCATGTGGGTGATGGGCTGGTGGCTGGAGGCGTCGGAGGTGGGTGCCAGCGCAGCC
AGGGTGCGGGCCAGTTTCTTTGCCAGCGCGATGTCGAGGCGGTGGACGAGGCACAACTGCGAGCC
GTCCCAGTCCCAGATCTCGCCCTGCAGCTGTTCTGGGTAGAGGAC
Found at i:92475 original size:7 final size:7
Alignment explanation
Indices: 92440--92525 Score: 54
Period size: 7 Copynumber: 11.9 Consensus size: 7
92430 GGGGTGGGAA
92440 GATGGT-
1 GATGGTG
*
92446 GATCGTG
1 GATGGTG
92453 GATGGTG
1 GATGGTG
92460 G-TGGATG
1 GATGG-TG
92467 GATGGTG
1 GATGGTG
92474 GATGGTGAAG
1 GATGGT---G
*
92484 GAT-ATG
1 GATGGTG
92490 GATGGTG
1 GATGGTG
92497 GA-GGATATG
1 GATGG---TG
*
92506 GATGGTA
1 GATGGTG
92513 GATGGTG
1 GATGGTG
92520 GATGGT
1 GATGGT
92526 TGTGGATGGT
Statistics
Matches: 63, Mismatches: 6, Indels: 21
0.70 0.07 0.23
Matches are distributed among these distances:
6 14 0.22
7 35 0.56
8 3 0.05
9 5 0.08
10 6 0.10
ACGTcount: A:0.21, C:0.01, G:0.50, T:0.28
Consensus pattern (7 bp):
GATGGTG
Left flanking sequence: Indices 91940 -- 92439
GGTCGCTGTAGATGTGGTGCACCTCGAGGCGCGACAGCCGTGCCACCACGAGCAGGAGGTCGGCG
GTGAGGCGCATGTGGGTGATGGGCTGGTGGCTGGAGGCGTCGGAGGTGGGTGCCAGCGCAGCCAG
GGTGCGGGCCAGTTTCTTTGCCAGCGCGATGTCGAGGCGGTGGACGAGGCACAACTGCGAGCCGT
CCCAGTCCCAGATCTCGCCCTGCAGCTGTTCTGGGTAGAGGACGAAGAGCTCGCCGTGGGGGCCG
CAGTCCACGAGGGTGTCGTTGGCGTCGCCGGCGAGGGTGTCTGCGTCGTCGCCGCCGTTGGTGAC
CTGTTTTATTTTGCTCCACAGTGCGGTGGCGGTGCCCAAGCGGTGTCCGCGTTTGGGTGATAGTG
GTCTAGAGGTTAGTATGAGGAGTGGGGGTGGGGGGAATGGGGGAGAAGCATGGATGGTGGTGTGA
ATAGGAGGGGGTGATAAGATGGTGGTGATGGAGAGGGGGTGGGAA
Right flanking sequence: Indices 92526 -- 93025
TGTGGATGGTGAGGATGGTGGAGGAGGTCAGAGGAGGTTGGAATCTGGGATAATGGTGTGAAGAT
GGTGGTAGATTAGGTGAAATCAGTGGTAGATTGTGAAGATGGTGGTCGGATTAATCACTGTGGGA
GGTAGTCTTGGATCAAATGAGAACCGTGGAAACAAGTAAGAAGGAATCAACACAGACTTAGCTCT
CTTTGTTCACCATGATGTCTTACCTCAGCCTCTTTCACATCTCGCTGTCTGGTAAGATCGCTGTA
TCTCTGTTCACCGTACTGTCTTTGCCTCTCTCCACCTCTCTCACTTTTGAGTAACCATTTCCCCA
CTCTCGCCACCAAATCTTCTCAACCAAAGTCTCCCTGCATTCTCCACCCCGTCCCATCCCATTGC
ATCCCCCACACCCCCCTTATCGCCCCTGTCCACGCGGTCCCGCGTCCCGTCGTCTCCGGTGATAA
CGAGTGACCCCACACGTGTGCGGCGGTCTCCCCTTGCAATTGCCC
Found at i:92493 original size:16 final size:16
Alignment explanation
Indices: 92472--92511 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
92462 GGATGGATGG
92472 TGGATGGTGAAGGATA
1 TGGATGGTGAAGGATA
*
92488 TGGATGGTGGAGGATA
1 TGGATGGTGAAGGATA
92504 TGGATGGT
1 TGGATGGT
92512 AGATGGTGGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.25, C:0.00, G:0.47, T:0.28
Consensus pattern (16 bp):
TGGATGGTGAAGGATA
Left flanking sequence: Indices 91972 -- 92471
GACAGCCGTGCCACCACGAGCAGGAGGTCGGCGGTGAGGCGCATGTGGGTGATGGGCTGGTGGCT
GGAGGCGTCGGAGGTGGGTGCCAGCGCAGCCAGGGTGCGGGCCAGTTTCTTTGCCAGCGCGATGT
CGAGGCGGTGGACGAGGCACAACTGCGAGCCGTCCCAGTCCCAGATCTCGCCCTGCAGCTGTTCT
GGGTAGAGGACGAAGAGCTCGCCGTGGGGGCCGCAGTCCACGAGGGTGTCGTTGGCGTCGCCGGC
GAGGGTGTCTGCGTCGTCGCCGCCGTTGGTGACCTGTTTTATTTTGCTCCACAGTGCGGTGGCGG
TGCCCAAGCGGTGTCCGCGTTTGGGTGATAGTGGTCTAGAGGTTAGTATGAGGAGTGGGGGTGGG
GGGAATGGGGGAGAAGCATGGATGGTGGTGTGAATAGGAGGGGGTGATAAGATGGTGGTGATGGA
GAGGGGGTGGGAAGATGGTGATCGTGGATGGTGGTGGATGGATGG
Right flanking sequence: Indices 92512 -- 93011
AGATGGTGGATGGTTGTGGATGGTGAGGATGGTGGAGGAGGTCAGAGGAGGTTGGAATCTGGGAT
AATGGTGTGAAGATGGTGGTAGATTAGGTGAAATCAGTGGTAGATTGTGAAGATGGTGGTCGGAT
TAATCACTGTGGGAGGTAGTCTTGGATCAAATGAGAACCGTGGAAACAAGTAAGAAGGAATCAAC
ACAGACTTAGCTCTCTTTGTTCACCATGATGTCTTACCTCAGCCTCTTTCACATCTCGCTGTCTG
GTAAGATCGCTGTATCTCTGTTCACCGTACTGTCTTTGCCTCTCTCCACCTCTCTCACTTTTGAG
TAACCATTTCCCCACTCTCGCCACCAAATCTTCTCAACCAAAGTCTCCCTGCATTCTCCACCCCG
TCCCATCCCATTGCATCCCCCACACCCCCCTTATCGCCCCTGTCCACGCGGTCCCGCGTCCCGTC
GTCTCCGGTGATAACGAGTGACCCCACACGTGTGCGGCGGTCTCC
Found at i:92608 original size:21 final size:19
Alignment explanation
Indices: 92582--92636 Score: 67
Period size: 21 Copynumber: 2.8 Consensus size: 19
92572 GGGATAATGG
92582 TGTGAAGATGGTGGTAGAT
1 TGTGAAGATGGTGGTAGAT
*
92601 TAGGTGAA-ATCAGTGGTAGAT
1 T--GTGAAGAT-GGTGGTAGAT
92622 TGTGAAGATGGTGGT
1 TGTGAAGATGGTGGT
92637 CGGATTAATC
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
19 11 0.37
20 4 0.13
21 15 0.50
ACGTcount: A:0.27, C:0.02, G:0.40, T:0.31
Consensus pattern (19 bp):
TGTGAAGATGGTGGTAGAT
Left flanking sequence: Indices 92082 -- 92581
TTTCTTTGCCAGCGCGATGTCGAGGCGGTGGACGAGGCACAACTGCGAGCCGTCCCAGTCCCAGA
TCTCGCCCTGCAGCTGTTCTGGGTAGAGGACGAAGAGCTCGCCGTGGGGGCCGCAGTCCACGAGG
GTGTCGTTGGCGTCGCCGGCGAGGGTGTCTGCGTCGTCGCCGCCGTTGGTGACCTGTTTTATTTT
GCTCCACAGTGCGGTGGCGGTGCCCAAGCGGTGTCCGCGTTTGGGTGATAGTGGTCTAGAGGTTA
GTATGAGGAGTGGGGGTGGGGGGAATGGGGGAGAAGCATGGATGGTGGTGTGAATAGGAGGGGGT
GATAAGATGGTGGTGATGGAGAGGGGGTGGGAAGATGGTGATCGTGGATGGTGGTGGATGGATGG
TGGATGGTGAAGGATATGGATGGTGGAGGATATGGATGGTAGATGGTGGATGGTTGTGGATGGTG
AGGATGGTGGAGGAGGTCAGAGGAGGTTGGAATCTGGGATAATGG
Right flanking sequence: Indices 92637 -- 93136
CGGATTAATCACTGTGGGAGGTAGTCTTGGATCAAATGAGAACCGTGGAAACAAGTAAGAAGGAA
TCAACACAGACTTAGCTCTCTTTGTTCACCATGATGTCTTACCTCAGCCTCTTTCACATCTCGCT
GTCTGGTAAGATCGCTGTATCTCTGTTCACCGTACTGTCTTTGCCTCTCTCCACCTCTCTCACTT
TTGAGTAACCATTTCCCCACTCTCGCCACCAAATCTTCTCAACCAAAGTCTCCCTGCATTCTCCA
CCCCGTCCCATCCCATTGCATCCCCCACACCCCCCTTATCGCCCCTGTCCACGCGGTCCCGCGTC
CCGTCGTCTCCGGTGATAACGAGTGACCCCACACGTGTGCGGCGGTCTCCCCTTGCAATTGCCCC
AGGGCCAGCAGCGTACTTACGTTCTGTCGATTCGCACTTCGTTGACGGCAGTCATGGTGGGCCGT
AACTCAATATTGCGGTGGTAGGCTTATCTCCTTATCTACGGCGGG
Found at i:93687 original size:24 final size:24
Alignment explanation
Indices: 93645--93719 Score: 80
Period size: 24 Copynumber: 3.1 Consensus size: 24
93635 AAGCGGAAAA
**
93645 GGGAAGTCAGAAGGGAGCTGAGAGT
1 GGGAA-TCAGAAGAAAGCTGAGAGT
* *
93670 GGGAGTCA-AAGAAAAGCTAAGAGT
1 GGGAATCAGAAG-AAAGCTGAGAGT
*
93694 GGGAATCAGAAGGAAGCTGAGAGT
1 GGGAATCAGAAGAAAGCTGAGAGT
93718 GG
1 GG
93720 AATTCGGTAG
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
23 3 0.07
24 31 0.76
25 7 0.17
ACGTcount: A:0.37, C:0.08, G:0.43, T:0.12
Consensus pattern (24 bp):
GGGAATCAGAAGAAAGCTGAGAGT
Left flanking sequence: Indices 93145 -- 93644
ACCCAACCCTGTTTATTACCGCGCACTCCCGATCACGTGGGAGGGGCTCGAGGTAGACCGATAAT
ATTTACCTATTCGAGGCGGCAGGCAAGCGAGCGTACGCGCGCGGATGAATGACCGGTTACCCCAC
CAAGTGACGTGCCGCCCACAGCCGGCAACCCTCGATCACGCTTGCCGCAACACCACCGCGTGACC
CCGGGCATTGCAATGACAACGCAGCACATCTCGTATATAGGACCATGGTAGTTACCAGAGGTTGC
TGTGAGGTAGGCGTAGACGTGGTGGACGTGGGTGGAGCCTGGGCAGGGTTCAACTCGAATGATAA
GCGCCAGGTGCGTTTGTGTGCGCCAGAGCAAGGAACGCTGCCCGCACACGCAAGCGTCACTCAAG
GCGAGGTCGGCGAAGGTCTGGATCACTGGTCAGGGGCACGCGCCACCAACGGTGCGACATGGCTA
TTGTCTAAGTAGGGGTAGGAGAGGGGGTGAGAGGGAAGCGGAAAA
Right flanking sequence: Indices 93720 -- 94219
AATTCGGTAGAGTACCGTGCCACGAGCTCTTGAATAAAAAGTGTTCTGGATCGGTGTGGTGGTGG
TAGATCGCGTAGGTTACGGTTGATCGCACCAAACGGCTAGATACGACGTGAGCGTTCGTAGCGTA
CCGCACGGCTAACGAAGGTGTCAAGAGGTCGTCATTTCGACCACTTTTATGCTGCGTGTAACCTT
GCGGTTCGCAGCCAGCTACCAGACAGCCACGGCGTGTCCAGGCAGGCGCAAGCGAGCGAACTTTA
CCGGAGGGGTGGATCTAATGACTCAGCGAGAGATCTGGGGCCACAGGAGGTGGCGTGGTAGAACG
CAGCCAGATAGTAGCCCTCGAGTGGCTTCACAGGGGTTCCCAGGGCAGTCCCAACCGTTTCCATA
ATTGTAATTACGTAGTCGACGTCCCAGTGCATTACACTCGTCACAATCACCCGACACGTCATGTC
TGGTCAACACCTAATCCACACCGCAGCACCTATGTCCACCGTAGT
Found at i:94229 original size:18 final size:19
Alignment explanation
Indices: 94203--94253 Score: 59
Period size: 21 Copynumber: 2.6 Consensus size: 19
94193 CACCGCAGCA
*
94203 CCTATGTCCACC-GTAGTC
1 CCTACGTCCACCTGTAGTC
*
94221 CCTCCGTCCACTACTGTAGTC
1 CCTACGTCCAC--CTGTAGTC
94242 CCTACGTCCACC
1 CCTACGTCCACC
94254 ACCCTAGCCC
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
18 9 0.33
19 1 0.04
20 1 0.04
21 16 0.59
ACGTcount: A:0.16, C:0.45, G:0.14, T:0.25
Consensus pattern (19 bp):
CCTACGTCCACCTGTAGTC
Left flanking sequence: Indices 93703 -- 94202
AAGGAAGCTGAGAGTGGAATTCGGTAGAGTACCGTGCCACGAGCTCTTGAATAAAAAGTGTTCTG
GATCGGTGTGGTGGTGGTAGATCGCGTAGGTTACGGTTGATCGCACCAAACGGCTAGATACGACG
TGAGCGTTCGTAGCGTACCGCACGGCTAACGAAGGTGTCAAGAGGTCGTCATTTCGACCACTTTT
ATGCTGCGTGTAACCTTGCGGTTCGCAGCCAGCTACCAGACAGCCACGGCGTGTCCAGGCAGGCG
CAAGCGAGCGAACTTTACCGGAGGGGTGGATCTAATGACTCAGCGAGAGATCTGGGGCCACAGGA
GGTGGCGTGGTAGAACGCAGCCAGATAGTAGCCCTCGAGTGGCTTCACAGGGGTTCCCAGGGCAG
TCCCAACCGTTTCCATAATTGTAATTACGTAGTCGACGTCCCAGTGCATTACACTCGTCACAATC
ACCCGACACGTCATGTCTGGTCAACACCTAATCCACACCGCAGCA
Right flanking sequence: Indices 94254 -- 94753
ACCCTAGCCCACCCCCACCCATTTCCGCACTTTCCAAAAATAGCAATAACCACCAAACCACAACA
CGCCCGATCCACGCCTGAGCCACCGGGCAACCTCCATGCAACCGAACGTAATTTTACCCCAGCGT
GGTACGATCGGCGCTACCAGCACCACGCACCATTACACAGTGGTTTATGCAACACCCGGAGCAGT
GGCCGCGGCTCCACCCATTGCGATGCGGCCCCGACCACCACCACACATTACTGCCCACCACCACT
AAGCCCCAGCGCCCCCACCGCGACCGCCCACCCCCCGGGCCCGATCGATCTGGGCTAAATATACT
TTGATGAATCAGCGCTAAATGTGCAGGCAGCCATGCACGTACCACCAGCAATCACCGATGACAAC
ACAAGATCCAAGCGACAGCCACGCCAGCCACGACAACCACCACACACAACAGACACAACAGAAAC
CACACTCGCAACATACTTACCCCTACCACACCCACCCCCTACCCA
Found at i:94752 original size:11 final size:11
Alignment explanation
Indices: 94738--94762 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
94728 CCCCTACCAC
94738 ACCCACCCCCT
1 ACCCACCCCCT
94749 ACCCACCCCCT
1 ACCCACCCCCT
94760 ACC
1 ACC
94763 TTCCTCCTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.72, G:0.00, T:0.08
Consensus pattern (11 bp):
ACCCACCCCCT
Left flanking sequence: Indices 94238 -- 94737
AGTCCCTACGTCCACCACCCTAGCCCACCCCCACCCATTTCCGCACTTTCCAAAAATAGCAATAA
CCACCAAACCACAACACGCCCGATCCACGCCTGAGCCACCGGGCAACCTCCATGCAACCGAACGT
AATTTTACCCCAGCGTGGTACGATCGGCGCTACCAGCACCACGCACCATTACACAGTGGTTTATG
CAACACCCGGAGCAGTGGCCGCGGCTCCACCCATTGCGATGCGGCCCCGACCACCACCACACATT
ACTGCCCACCACCACTAAGCCCCAGCGCCCCCACCGCGACCGCCCACCCCCCGGGCCCGATCGAT
CTGGGCTAAATATACTTTGATGAATCAGCGCTAAATGTGCAGGCAGCCATGCACGTACCACCAGC
AATCACCGATGACAACACAAGATCCAAGCGACAGCCACGCCAGCCACGACAACCACCACACACAA
CAGACACAACAGAAACCACACTCGCAACATACTTACCCCTACCAC
Right flanking sequence: Indices 94763 -- 95262
TTCCTCCTCGCGCCAGCCCCGGCTAGCGATGTTCCCTGCATAATGCTGGTGTTTTGGTTTTCCCC
AATCGGGCTGCCAGGACAATCTGAAGCGGCCTTGATGGATTGTGAAATGCTGGTGAACAAAATTT
AAAACACCTACCCTTGCGAGCTCCGCCAGCCAAATCCCGCCTACGAACCGCATACCCTCGAGGCA
CCACACCCCAGCTAGCCTGTTTGACGCCCAAACCGCGTTAGCTCTTTTCCATTAATTGCATCGAT
CCGCGACGGATCCCCATTGACCCTCCCTGCCATGTCCCACCCACCGTTGCCGTTTAAGGTGAAAA
CCATTGTGTCGTGGGCCGGCGAGGAAGACGGAGACCTCGGGTTCATCGAAAACGAGATTGTGGAG
GTGTACCTGGTGGTCGACGACCTCTGGTGGTCGGGCAAGTTGCGTCGCAACAACGCCGAGGGCAT
TTTCCCCAAAGACTACGTGGAAGTGATCGAGCAGAAGGGCCTCCC
Found at i:95372 original size:9 final size:9
Alignment explanation
Indices: 95343--95476 Score: 81
Period size: 9 Copynumber: 15.9 Consensus size: 9
95333 CAGACACCGG
*
95343 TGAACCAAA
1 TGAACCACA
* *
95352 TGAGCCAGA
1 TGAACCACA
95361 TGAACCACA
1 TGAACCACA
* *
95370 TGAGCCAAA
1 TGAACCACA
95379 TGAACCACA
1 TGAACCACA
* *
95388 TGAGCCAGA
1 TGAACCACA
*
95397 TGAACCAGA
1 TGAACCACA
*
95406 TGAGCCA-A
1 TGAACCACA
95414 --AACCACA
1 TGAACCACA
*
95421 TGAGCCA-A
1 TGAACCACA
95429 --AACCACA
1 TGAACCACA
*
95436 TGAGCCA-A
1 TGAACCACA
*
95444 GGGAACCACA
1 -TGAACCACA
95454 TGAACCA-A
1 TGAACCACA
95462 --AACCACA
1 TGAACCACA
95469 TGAACCAC
1 TGAACCAC
95477 CACACCCTGG
Statistics
Matches: 95, Mismatches: 19, Indels: 22
0.70 0.14 0.16
Matches are distributed among these distances:
6 13 0.14
7 3 0.03
8 4 0.04
9 74 0.78
10 1 0.01
ACGTcount: A:0.44, C:0.29, G:0.18, T:0.09
Consensus pattern (9 bp):
TGAACCACA
Left flanking sequence: Indices 94843 -- 95342
ACAATCTGAAGCGGCCTTGATGGATTGTGAAATGCTGGTGAACAAAATTTAAAACACCTACCCTT
GCGAGCTCCGCCAGCCAAATCCCGCCTACGAACCGCATACCCTCGAGGCACCACACCCCAGCTAG
CCTGTTTGACGCCCAAACCGCGTTAGCTCTTTTCCATTAATTGCATCGATCCGCGACGGATCCCC
ATTGACCCTCCCTGCCATGTCCCACCCACCGTTGCCGTTTAAGGTGAAAACCATTGTGTCGTGGG
CCGGCGAGGAAGACGGAGACCTCGGGTTCATCGAAAACGAGATTGTGGAGGTGTACCTGGTGGTC
GACGACCTCTGGTGGTCGGGCAAGTTGCGTCGCAACAACGCCGAGGGCATTTTCCCCAAAGACTA
CGTGGAAGTGATCGAGCAGAAGGGCCTCCCGCACCTGCTGCTGACGATGTCGCTCGGCAAGCCCC
ACACCCCGCAGAAAGAGGCCCAGCTGCCCATGAACCAGACACCGG
Right flanking sequence: Indices 95477 -- 95976
CACACCCTGGTCAACCAGCGCATGGCCATGTCCGCGTCCCAGCCGCTCCGCCTGCGCGCGTCGTA
CCTCGACGACGACGACGACGAGGCCCACAACTACCTGTTCGACGAGGCCTACGCGCGCCGGCTGC
TGCCCAAACGCCACCAGGGCCTGCGGCTCGCCCAGCTCGAGCGCGAGCTCGCCGACCGCCAGCGC
GAGATCGCCGCGTTCAAGTCCCACTCCGCCAAGAGCACCCGCCAGCTGCCGCTGCCGCTGCCACA
CCACCGGCGGTCGCGGCGCCACCAGGAGGGCGCGCTTGCCAAGCTGCGGCTGTGCTACGACTTGG
ACGACAGCCACCGCGCGTACGTGGCCGCCAACACCACCATCCAGCTGGAGTTGGACACCTACGGC
GAGCTGGCGCTGCTGGAGCTGGACGACGACGACTTGGCCGCGCGCCGGGCCGCGCTCGAGCGCGA
GTTGCAGCGGTTGAAGCGCAAGGAGGACCGCCGCAAACTGAAGCT
Found at i:95461 original size:18 final size:16
Alignment explanation
Indices: 95344--95471 Score: 136
Period size: 18 Copynumber: 7.7 Consensus size: 16
95334 AGACACCGGT
*
95344 GAACCAAATGAGCCAGA
1 GAACCACATGAGCCA-A
95361 TGAACCACATGAGCCAAA
1 -GAACCACATGAGCC-AA
95379 TGAACCACATGAGCCAGA
1 -GAACCACATGAGCCA-A
*
95397 TGAACCAGATGAGCCAA
1 -GAACCACATGAGCCAA
95414 -AACCACATGAGCCAA
1 GAACCACATGAGCCAA
95429 -AACCACATGAGCCAA
1 GAACCACATGAGCCAA
*
95444 GGGAACCACATGAACCAA
1 --GAACCACATGAGCCAA
95462 -AACCACATGA
1 GAACCACATGA
95472 ACCACCACAC
Statistics
Matches: 101, Mismatches: 4, Indels: 13
0.86 0.03 0.11
Matches are distributed among these distances:
15 39 0.39
17 2 0.02
18 59 0.58
19 1 0.01
ACGTcount: A:0.45, C:0.28, G:0.19, T:0.09
Consensus pattern (16 bp):
GAACCACATGAGCCAA
Left flanking sequence: Indices 94844 -- 95343
CAATCTGAAGCGGCCTTGATGGATTGTGAAATGCTGGTGAACAAAATTTAAAACACCTACCCTTG
CGAGCTCCGCCAGCCAAATCCCGCCTACGAACCGCATACCCTCGAGGCACCACACCCCAGCTAGC
CTGTTTGACGCCCAAACCGCGTTAGCTCTTTTCCATTAATTGCATCGATCCGCGACGGATCCCCA
TTGACCCTCCCTGCCATGTCCCACCCACCGTTGCCGTTTAAGGTGAAAACCATTGTGTCGTGGGC
CGGCGAGGAAGACGGAGACCTCGGGTTCATCGAAAACGAGATTGTGGAGGTGTACCTGGTGGTCG
ACGACCTCTGGTGGTCGGGCAAGTTGCGTCGCAACAACGCCGAGGGCATTTTCCCCAAAGACTAC
GTGGAAGTGATCGAGCAGAAGGGCCTCCCGCACCTGCTGCTGACGATGTCGCTCGGCAAGCCCCA
CACCCCGCAGAAAGAGGCCCAGCTGCCCATGAACCAGACACCGGT
Right flanking sequence: Indices 95472 -- 95971
ACCACCACACCCTGGTCAACCAGCGCATGGCCATGTCCGCGTCCCAGCCGCTCCGCCTGCGCGCG
TCGTACCTCGACGACGACGACGACGAGGCCCACAACTACCTGTTCGACGAGGCCTACGCGCGCCG
GCTGCTGCCCAAACGCCACCAGGGCCTGCGGCTCGCCCAGCTCGAGCGCGAGCTCGCCGACCGCC
AGCGCGAGATCGCCGCGTTCAAGTCCCACTCCGCCAAGAGCACCCGCCAGCTGCCGCTGCCGCTG
CCACACCACCGGCGGTCGCGGCGCCACCAGGAGGGCGCGCTTGCCAAGCTGCGGCTGTGCTACGA
CTTGGACGACAGCCACCGCGCGTACGTGGCCGCCAACACCACCATCCAGCTGGAGTTGGACACCT
ACGGCGAGCTGGCGCTGCTGGAGCTGGACGACGACGACTTGGCCGCGCGCCGGGCCGCGCTCGAG
CGCGAGTTGCAGCGGTTGAAGCGCAAGGAGGACCGCCGCAAACTG
Found at i:98003 original size:22 final size:23
Alignment explanation
Indices: 97961--98003 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
97951 GGATGGATAA
*
97961 GAGAAGGTGAAGAGATGAGAATG
1 GAGAAGGTGAAGAGATAAGAATG
*
97984 GAGAAGG-GAAGAGTTAAGAA
1 GAGAAGGTGAAGAGATAAGAA
98004 GAGAATAGAG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 11 0.61
23 7 0.39
ACGTcount: A:0.47, C:0.00, G:0.42, T:0.12
Consensus pattern (23 bp):
GAGAAGGTGAAGAGATAAGAATG
Left flanking sequence: Indices 97461 -- 97960
AGGGGGTGCAGAAGCACTTTGACAACGTCCACGAGCTCGCGTTGGTGATTCCGTTGTACCACCAG
GGCACCCTGAAGCCCACGCGGTTCATTCCGCGCTTCCCCACCGTCCAGGCCCACAACAACGATCT
CTACGTCAAGATGCCTCAGACGGCCGAGTTGGTCAAGGGCAACGCCTACAACTTTGACGTGCACG
CGCACCCGTCGCGCGGGATCAACCTGGGGCTGGCGATGATGAACGCCGACTTCAAGATGGTGGTG
GAGCTGCCGCTGGGCAAGTACTACAACCTCCGCCCGGAGTCGTCCGCGGCCGCGGCCACCAGCTA
CACCGCCAACATCAAGTGCGTGGAGCCGGGCACCTACCGCGGGCTTGTTATTGGTGACTCGGGCA
ACAGCTGGTATGTTTTCACCCAGTGGGAGTGCAAGTGAGCATGGCGATGGTAGATGACAGCATAC
ATTAATAATTCATGAGTAGTAATAGATGCCAACAAGGATGGATAA
Right flanking sequence: Indices 98004 -- 98503
GAGAATAGAGGTAAGAAGAGAATATGATCCGAGCTACAGCGGTATGGACCTTTGTTTCGGTCTGA
GATCTTCGCTTGTCCCTGCATATGAATGGCTGCAAATGGTTCCACAAGCACATTATCCCGTAGAG
GCATAATGGCGAAGGAGGTTTTGTGATGCGTACAATGAGGCAATGGAGTGGAAGGTTGGTGGGAT
TCACAGCATGAGATACGGTTGGTGGGTGATTGAGTCTAAGAAATATTTTAGCGGATTAGGGTTCG
TTGGGCATATTAGGGTTCATACAGGGGTGATTGTGTTTCGGCAACGCTGGCTGGTTTGTTAAAAC
CTAGTGATGGTAAGCGAAAGCGCATACCGGGGTTGTTGCCCACGTAGTTCAAGGTTACCACATTT
TGAAGCCACACGTGATATACATCACGTGACTTAAAATTCAGCGACAGAGGTTTGCCCGTGTCCCT
GTTTTCCCGAATTTTTTTTTCAGCCGTCCAACAGCGTCAGGGTGG
Found at i:98018 original size:17 final size:17
Alignment explanation
Indices: 97993--98027 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
97983 GGAGAAGGGA
*
97993 AGAGTTAAGAAGAGAAT
1 AGAGGTAAGAAGAGAAT
98010 AGAGGTAAGAAGAGAAT
1 AGAGGTAAGAAGAGAAT
98027 A
1 A
98028 TGATCCGAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.31, T:0.14
Consensus pattern (17 bp):
AGAGGTAAGAAGAGAAT
Left flanking sequence: Indices 97493 -- 97992
GAGCTCGCGTTGGTGATTCCGTTGTACCACCAGGGCACCCTGAAGCCCACGCGGTTCATTCCGCG
CTTCCCCACCGTCCAGGCCCACAACAACGATCTCTACGTCAAGATGCCTCAGACGGCCGAGTTGG
TCAAGGGCAACGCCTACAACTTTGACGTGCACGCGCACCCGTCGCGCGGGATCAACCTGGGGCTG
GCGATGATGAACGCCGACTTCAAGATGGTGGTGGAGCTGCCGCTGGGCAAGTACTACAACCTCCG
CCCGGAGTCGTCCGCGGCCGCGGCCACCAGCTACACCGCCAACATCAAGTGCGTGGAGCCGGGCA
CCTACCGCGGGCTTGTTATTGGTGACTCGGGCAACAGCTGGTATGTTTTCACCCAGTGGGAGTGC
AAGTGAGCATGGCGATGGTAGATGACAGCATACATTAATAATTCATGAGTAGTAATAGATGCCAA
CAAGGATGGATAAGAGAAGGTGAAGAGATGAGAATGGAGAAGGGA
Right flanking sequence: Indices 98028 -- 98527
TGATCCGAGCTACAGCGGTATGGACCTTTGTTTCGGTCTGAGATCTTCGCTTGTCCCTGCATATG
AATGGCTGCAAATGGTTCCACAAGCACATTATCCCGTAGAGGCATAATGGCGAAGGAGGTTTTGT
GATGCGTACAATGAGGCAATGGAGTGGAAGGTTGGTGGGATTCACAGCATGAGATACGGTTGGTG
GGTGATTGAGTCTAAGAAATATTTTAGCGGATTAGGGTTCGTTGGGCATATTAGGGTTCATACAG
GGGTGATTGTGTTTCGGCAACGCTGGCTGGTTTGTTAAAACCTAGTGATGGTAAGCGAAAGCGCA
TACCGGGGTTGTTGCCCACGTAGTTCAAGGTTACCACATTTTGAAGCCACACGTGATATACATCA
CGTGACTTAAAATTCAGCGACAGAGGTTTGCCCGTGTCCCTGTTTTCCCGAATTTTTTTTTCAGC
CGTCCAACAGCGTCAGGGTGGTCTCTCAGCCTCAAGTAGCCCATT
Found at i:99044 original size:15 final size:15
Alignment explanation
Indices: 99005--99045 Score: 73
Period size: 15 Copynumber: 2.7 Consensus size: 15
98995 AACAAAGCCG
*
99005 TCGCTGATTATGCCA
1 TCGCTGATTGTGCCA
99020 TCGCTGATTGTGCCA
1 TCGCTGATTGTGCCA
99035 TCGCTGATTGT
1 TCGCTGATTGT
99046 TTCAACCTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.15, C:0.24, G:0.24, T:0.37
Consensus pattern (15 bp):
TCGCTGATTGTGCCA
Left flanking sequence: Indices 98505 -- 99004
CTCTCAGCCTCAAGTAGCCCATTGTGGTCGTTTTTGCTACCATGGATAGACCCCGCTGGAGTTGC
TTAACCACAAAGTAGCCGTGGCTATATGCACTCCAATTTCTGGCTGGCGCCGGTGGCAAAGGAGA
AAACCCGGGAAAGCAACGTAAAACTCCTATGCCGGGGAGCGAGCAGCAGCAGCAATGGTAATCTC
GGCTTTGTTTTGGTCTGCTTGGTTTCTCAGCGCGGCGCCCATGTCTGTAGCCGTTTGAATCCCAC
AGGTATGATTTCCATTGAGACCCGTCAATTGAGAGCTGGCGCCCGGTAAAAGAACAAAAAACAAT
AAACCGTTGTGTTTGTGGGACCCTAATTTGGTCTCTGGATGGTTTCAAAAGTCGGTGTACCTCAT
TTTCACTGGTTTAGCCAAATGTCATAGATAAGCACAGTAGTAAGCACAGAAAATAATCATCCACA
GCAAAATATTCCTGATAGGCGATCATTAAAAAAACAACAAAGCCG
Right flanking sequence: Indices 99046 -- 99545
TTCAACCTTCCACACCCTCGCCCACCACGTGCATCGTCTCTTATCTCGCTATCACCCCACGCTAC
CCACCTCGGGCGGTTGCGAGCACGTGAGCGAAAGATCGAAGGCGACATTAACCATCCAACCCAGC
AAACCCGCCGATGTTGAACTTCACAGGCTCGACAAAGAAGCGGGTGGTGAATCTCGGCAACAGGC
TGACCACCGGGGGCGGCTCCGGTGGGTTTTTGGAGCAGCAGCGCCGCCAGCGCGAGGCCCGGGAG
AAGCAACGACGCGACACGGAGGCGGCCTTGGTGCTCCAGCGCCACATACAACGCTACTTGGCGTT
GCGTAGGGCCTCGGAGAGCCTTGCCAACGTCACCAACCCCATTGCATTTCTTGATTTTGTCAGCC
GGTGGAACCGCGACGACCCGAGGCTCCCAGAGGTGCTCAGGCAGGTGGTGGCCCAGCAGGTGGCG
GACGACGCCATGGACGTCGACGGGGCGAGCACGCGCGAGGCCACC
Found at i:104628 original size:11 final size:12
Alignment explanation
Indices: 104596--104630 Score: 54
Period size: 11 Copynumber: 3.0 Consensus size: 12
104586 ACGAAGGGAT
104596 GGGGCAGTGACA
1 GGGGCAGTGACA
*
104608 GGGGCGGTGAC-
1 GGGGCAGTGACA
104619 GGGGCAGTGACA
1 GGGGCAGTGACA
104631 AGAGACATGG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
11 10 0.50
12 10 0.50
ACGTcount: A:0.20, C:0.17, G:0.54, T:0.09
Consensus pattern (12 bp):
GGGGCAGTGACA
Left flanking sequence: Indices 104096 -- 104595
GGCTTTCGCCATCGTCCTCGTCGTGCTTGACCACCACCGACGTGGTGTCGACAAACAGTGTCTTT
GTCTGCTGGTCGCTGAACACAAAGAACTTGATGAACACGATGATCACCACTATCACCAGCACCTG
GCCGAGGATGAGCCCCTGGGTGAACGACCACCCGGACTTGCCGGAGCTGTCAAGCGAAAGCTCGA
GCTGGAGCTCCTCTCGTAGCTGCTGCAAAAGACTGTGTTCTGCCACCGACATCGCAGCGTCCATG
TCTGTGGTGGGTCTTTGTGCCTGCATGGTTCAATCAGGCCACGCGCTACCATCTGAGGACGGCCC
TGGTTACGGGGCTTGGGTGGGCTGGGTGTTTCTAGCTTCCCAGAATGTTTCAGCCCCTTACTAGA
CAGTACTGGTTTAGGCAGTGCAGCCGGTTGCGGTGTGGTTGCGATGAAATTGCGTAAAATTACGT
TATGGTAACTGCTATTGTAGGCTTGTGAGGCAGTGACGAAGGGAT
Right flanking sequence: Indices 104631 -- 105130
AGAGACATGGGCACGAGGCGACGCGCCAAGAGGACCGTCGCTTTGCGGTAGAACGTGTTCTTGGC
TGCCTTATCACACAGCCACCAGATTTCTTGCGAGCCAAGAAACGGACAATAAACCCGGGTCACAA
TGACAGCAGGCGGTTGCACAAACAATCTGCGAAGCGAGTCTTGGCCTGGGACGGGTGCCGAATAC
GGGTTTAAGCAGGAGAGTCACTGCCGGAGTTATTTTCAAAATTGGGACACCGGCACCTCTCTTTT
TGGGCCATTATCTAGAGGAGATAATGCTTGCCAAGATTTGGCCGGGACGTGAAAGGCGTTGCACA
GGGCTGGAGCAATTGGTATTGTTATGTCGTCAACCCAATGAGGGAACTTGGGCGCAATTGGCTGA
ATTGAGAGAATTGGGTTGATTGGACGAATTGAGCTGGTGGGTGGGAGGTCTCTGGTAAACAGGAA
TCGAACCATTTTGGAGACCACAAAGCCAGAGTGTGGGGTTGGAGA
Found at i:113982 original size:16 final size:16
Alignment explanation
Indices: 113934--113990 Score: 80
Period size: 17 Copynumber: 3.6 Consensus size: 16
113924 GCGAACAATA
*
113934 GTCGGTGCG-GACCCG
1 GTCGGTGTGCGACCCG
113949 GTCGGTGTGCGCACCCG
1 GTCGGTGTGCG-ACCCG
*
113966 GTCGTTGTGCGACCCG
1 GTCGGTGTGCGACCCG
113982 GTCGGTGTG
1 GTCGGTGTG
113991 GTGTGTTGAC
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
15 8 0.22
16 14 0.38
17 15 0.41
ACGTcount: A:0.05, C:0.30, G:0.44, T:0.21
Consensus pattern (16 bp):
GTCGGTGTGCGACCCG
Left flanking sequence: Indices 113434 -- 113933
GCACCCCTACGCACTCCAAAGCCACGGGCGAGACGATCGATATTTTTGTGACGGCGACCTGGGGA
GGCCAGGTGCATCTGTGTCCCGCCACCCCGTTTGAGCAGGGTGCTGGCGGCGATGGCAGCGATCC
ATTGTTACCCGCAGTTTGGCACTGGTGCGGGCAGCACGTGACGCGATGCCACTATAAAAGCAGGC
CATCGCGGAAACGAAAAAGTAACCAGAAAGTTAACACCGGATAATTTGGCAGAGCCGCCGTGGTG
GCCCGTCCCCTGGCTTTTGTCGGCCTGCCTATTAATTTAGGAGGTTTGGCGCTAGCAAAGAGCAG
GCGACCGGTGGCAGTTCTGTTGACAAACTTCCGGGAGATCGAAGGTGGCTCTTTAAGTATGCACC
GAGGGTTTAAACCTCTTTGTATCCCGTAGGGTCGCAACATTGTAATGTGTAGCATACTCTGGTGA
AACGTCGGGCCGGAACCATGGCCATCGCAGCCATCGCGAACAATA
Right flanking sequence: Indices 113991 -- 114490
GTGTGTTGACCGGGCCCGGGCTCACGGTTAGCAACGGAGCTACAATGGAGCTACAATGGGGCTGC
AAAGGTCGAGGCCATTGTGGGTTGTTCGCCTGCTGTTGGTCTTTTTCTCTGCTACTGGGTCCGTC
CCGTCCCTTACATCGCGCCCACCGCGTCTCGCGGCTCCCCCGCGGTGTCCGCCGTGGCTGTGGGG
CACTTGTACCCCTGACCTCCTAGATGCTCTCTTGTGCGTGAAATCACCACCATTACGTAATCGTG
CTTGGCCACCGCAAAACACCACCAGCCGCCAAACCCCCACGTAACCCCACCAATGGCCCTCCAGC
AGGGCCAATGGGTCTCTCTCCGTAGCCTCTACCCGGATCACCCACCCCCAGTGCCCGCCAGAGCT
TTTGTGCGCCGCCCACCACCCCTTCCACGGCTGACCGCACGAACCATTTTGTTCGCACCAAACTC
ACTTGTCTGGACCACGTCAGTTGCTATGTTTCGCAAACGACCGCC
Found at i:121497 original size:16 final size:16
Alignment explanation
Indices: 121478--121543 Score: 69
Period size: 16 Copynumber: 4.1 Consensus size: 16
121468 GGCTACTAGA
* * *
121478 TTGGAAGACTTCTTTC
1 TTGGCAGACTCCTATC
* *
121494 TTGGTAGGCTCCTATC
1 TTGGCAGACTCCTATC
*
121510 TTGGCAGACTCCTGTC
1 TTGGCAGACTCCTATC
*
121526 TTGGCAGACTCCAATC
1 TTGGCAGACTCCTATC
121542 TT
1 TT
121544 ACCCCTATCT
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 41 1.00
ACGTcount: A:0.17, C:0.26, G:0.21, T:0.36
Consensus pattern (16 bp):
TTGGCAGACTCCTATC
Left flanking sequence: Indices 120978 -- 121477
GCATGCCGACGTGTCTCCACCACGAACATTGACTTCTAAAACACTCCTCAAACTTGCCCGAACCC
CGTGGAATTCGCACAATCGTCTCAGACAGCACAATGCCCGCAGACGCATCGGGCGAAAACAACTC
ATGCACGCGGCGAAAACCACGCATGAGCTATAAGAAGGCGGACCTTAAGACCAGTGCATTAACAA
TACAACACGCATACAATGAGAACCGAAATGATTAACTACTGCGGGCTGGCCTGTGGCTCCTCGTG
CGAGACCACGTGCAAGTGTTCGTCGTGCAAGGACGCGGGCTCGTCTCCGTGCGGCTGTGGCTGCA
AATCGAAGCCTGGCTGCTGCTAACCCCACGACCCCACAATCTATAGTGAATGCATAATGACTCGA
ACTGATGGCTTGAATGTATGATCTGGATCTGGTAACTCCTAGGTTTATGGACTGCTATCGTAGTA
GACGCCTAGGTTGGAAACAGACTTCATTCTTGGTAGGCTACTAGA
Right flanking sequence: Indices 121544 -- 122043
ACCCCTATCTTGGTAGCCTCATACCTGGGTAACTTTCTATCTTAGTAGACTCATACCTTGGTAAA
TTTCTATATTAGTAGACCCATACCTTGGTAAATTTCGAATTTAGTAAACCCATACCTTAGTAGAT
TTCGATCATTATAGACTTTCATCTTGGTAGACTCCAATCCTAGACTGATACCCTAGACTCCTATC
ATGCTCTTACACTCCTATCATGCTCCTACCTCCTATCATTCTCCTACACTCCCAAGCGACCTCAC
GGCAGATCCAGCCACTTTTCCACGTAAATCATTACTATCTATAATTAAAAGTACTGCTCCTTAAA
GGCAAACAGCTGGGTCGCAGGCTGGTACACCCCGTACTGGAGCTTGCGCGACCCGGCCAAGAGCG
GGCCCATGTTGATCACCTTGCACTTGAAGTAGCTCACCTCAAACGCCGCACACGTCGGGTCCTGG
AGAATCATCACCAGGGGCATGGGCTCCAACCGGAGCACATGGTTG
Found at i:121519 original size:32 final size:32
Alignment explanation
Indices: 121450--121543 Score: 98
Period size: 32 Copynumber: 2.9 Consensus size: 32
121440 AGGTTGGAAA
* * **
121450 CAGACTTCATTCTTGGTAGGCTACTAGATTGG
1 CAGACTTCTTTCTTGGTAGGCTCCTATCTTGG
*
121482 AAGACTTCTTTCTTGGTAGGCTCCTATCTTGG
1 CAGACTTCTTTCTTGGTAGGCTCCTATCTTGG
* * * * *
121514 CAGACTCCTGTCTTGGCAGACTCCAATCTT
1 CAGACTTCTTTCTTGGTAGGCTCCTATCTT
121544 ACCCCTATCT
Statistics
Matches: 51, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
32 51 1.00
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.35
Consensus pattern (32 bp):
CAGACTTCTTTCTTGGTAGGCTCCTATCTTGG
Left flanking sequence: Indices 120950 -- 121449
CTGGTTTGAGAGCTGTTTCAGGTTTGCTGCATGCCGACGTGTCTCCACCACGAACATTGACTTCT
AAAACACTCCTCAAACTTGCCCGAACCCCGTGGAATTCGCACAATCGTCTCAGACAGCACAATGC
CCGCAGACGCATCGGGCGAAAACAACTCATGCACGCGGCGAAAACCACGCATGAGCTATAAGAAG
GCGGACCTTAAGACCAGTGCATTAACAATACAACACGCATACAATGAGAACCGAAATGATTAACT
ACTGCGGGCTGGCCTGTGGCTCCTCGTGCGAGACCACGTGCAAGTGTTCGTCGTGCAAGGACGCG
GGCTCGTCTCCGTGCGGCTGTGGCTGCAAATCGAAGCCTGGCTGCTGCTAACCCCACGACCCCAC
AATCTATAGTGAATGCATAATGACTCGAACTGATGGCTTGAATGTATGATCTGGATCTGGTAACT
CCTAGGTTTATGGACTGCTATCGTAGTAGACGCCTAGGTTGGAAA
Right flanking sequence: Indices 121544 -- 122043
ACCCCTATCTTGGTAGCCTCATACCTGGGTAACTTTCTATCTTAGTAGACTCATACCTTGGTAAA
TTTCTATATTAGTAGACCCATACCTTGGTAAATTTCGAATTTAGTAAACCCATACCTTAGTAGAT
TTCGATCATTATAGACTTTCATCTTGGTAGACTCCAATCCTAGACTGATACCCTAGACTCCTATC
ATGCTCTTACACTCCTATCATGCTCCTACCTCCTATCATTCTCCTACACTCCCAAGCGACCTCAC
GGCAGATCCAGCCACTTTTCCACGTAAATCATTACTATCTATAATTAAAAGTACTGCTCCTTAAA
GGCAAACAGCTGGGTCGCAGGCTGGTACACCCCGTACTGGAGCTTGCGCGACCCGGCCAAGAGCG
GGCCCATGTTGATCACCTTGCACTTGAAGTAGCTCACCTCAAACGCCGCACACGTCGGGTCCTGG
AGAATCATCACCAGGGGCATGGGCTCCAACCGGAGCACATGGTTG
Found at i:121597 original size:32 final size:32
Alignment explanation
Indices: 121548--121690 Score: 146
Period size: 32 Copynumber: 4.5 Consensus size: 32
121538 AATCTTACCC
* * * *
121548 CTATCTTGGTAGCCTCATACCTGGGTAACTTT
1 CTATCTTAGTAGACTCATACCTTGGTAAATTT
121580 CTATCTTAGTAGACTCATACCTTGGTAAATTT
1 CTATCTTAGTAGACTCATACCTTGGTAAATTT
* *
121612 CTATATTAGTAGACCCATACCTTGGTAAATTT
1 CTATCTTAGTAGACTCATACCTTGGTAAATTT
* * * * *
121644 CGAAT-TTAGTAAACCCATACCTTAGTAGATTT
1 C-TATCTTAGTAGACTCATACCTTGGTAAATTT
*
121676 CGATCATTA-TAGACT
1 CTATC-TTAGTAGACT
121691 TTCATCTTGG
Statistics
Matches: 95, Mismatches: 13, Indels: 6
0.83 0.11 0.05
Matches are distributed among these distances:
31 2 0.02
32 88 0.93
33 5 0.05
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (32 bp):
CTATCTTAGTAGACTCATACCTTGGTAAATTT
Left flanking sequence: Indices 121048 -- 121547
AATTCGCACAATCGTCTCAGACAGCACAATGCCCGCAGACGCATCGGGCGAAAACAACTCATGCA
CGCGGCGAAAACCACGCATGAGCTATAAGAAGGCGGACCTTAAGACCAGTGCATTAACAATACAA
CACGCATACAATGAGAACCGAAATGATTAACTACTGCGGGCTGGCCTGTGGCTCCTCGTGCGAGA
CCACGTGCAAGTGTTCGTCGTGCAAGGACGCGGGCTCGTCTCCGTGCGGCTGTGGCTGCAAATCG
AAGCCTGGCTGCTGCTAACCCCACGACCCCACAATCTATAGTGAATGCATAATGACTCGAACTGA
TGGCTTGAATGTATGATCTGGATCTGGTAACTCCTAGGTTTATGGACTGCTATCGTAGTAGACGC
CTAGGTTGGAAACAGACTTCATTCTTGGTAGGCTACTAGATTGGAAGACTTCTTTCTTGGTAGGC
TCCTATCTTGGCAGACTCCTGTCTTGGCAGACTCCAATCTTACCC
Right flanking sequence: Indices 121691 -- 122190
TTCATCTTGGTAGACTCCAATCCTAGACTGATACCCTAGACTCCTATCATGCTCTTACACTCCTA
TCATGCTCCTACCTCCTATCATTCTCCTACACTCCCAAGCGACCTCACGGCAGATCCAGCCACTT
TTCCACGTAAATCATTACTATCTATAATTAAAAGTACTGCTCCTTAAAGGCAAACAGCTGGGTCG
CAGGCTGGTACACCCCGTACTGGAGCTTGCGCGACCCGGCCAAGAGCGGGCCCATGTTGATCACC
TTGCACTTGAAGTAGCTCACCTCAAACGCCGCACACGTCGGGTCCTGGAGAATCATCACCAGGGG
CATGGGCTCCAACCGGAGCACATGGTTGTACGCCGCGTCCACCAACCGCTTGGACGGAAGGAACG
GCTGCATGGTGCCCTGGTCGAGCAACGTCTTCACAAGCCGGCGCGCCTGGATGGTGGTGTTGGGC
AACCGCTCACCCTTGAGCCTGATGGCCGCTTTGAGCCGCTCGTCC
Found at i:121773 original size:18 final size:19
Alignment explanation
Indices: 121725--121790 Score: 98
Period size: 19 Copynumber: 3.5 Consensus size: 19
121715 AGACTGATAC
*
121725 CCTAGACTCCTATCATGCT
1 CCTACACTCCTATCATGCT
*
121744 CTTACACTCCTATCATGCT
1 CCTACACTCCTATCATGCT
*
121763 CCTAC-CTCCTATCATTCT
1 CCTACACTCCTATCATGCT
121781 CCTACACTCC
1 CCTACACTCC
121791 CAAGCGACCT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
18 17 0.40
19 25 0.60
ACGTcount: A:0.20, C:0.42, G:0.05, T:0.33
Consensus pattern (19 bp):
CCTACACTCCTATCATGCT
Left flanking sequence: Indices 121225 -- 121724
GTGGCTCCTCGTGCGAGACCACGTGCAAGTGTTCGTCGTGCAAGGACGCGGGCTCGTCTCCGTGC
GGCTGTGGCTGCAAATCGAAGCCTGGCTGCTGCTAACCCCACGACCCCACAATCTATAGTGAATG
CATAATGACTCGAACTGATGGCTTGAATGTATGATCTGGATCTGGTAACTCCTAGGTTTATGGAC
TGCTATCGTAGTAGACGCCTAGGTTGGAAACAGACTTCATTCTTGGTAGGCTACTAGATTGGAAG
ACTTCTTTCTTGGTAGGCTCCTATCTTGGCAGACTCCTGTCTTGGCAGACTCCAATCTTACCCCT
ATCTTGGTAGCCTCATACCTGGGTAACTTTCTATCTTAGTAGACTCATACCTTGGTAAATTTCTA
TATTAGTAGACCCATACCTTGGTAAATTTCGAATTTAGTAAACCCATACCTTAGTAGATTTCGAT
CATTATAGACTTTCATCTTGGTAGACTCCAATCCTAGACTGATAC
Right flanking sequence: Indices 121791 -- 122290
CAAGCGACCTCACGGCAGATCCAGCCACTTTTCCACGTAAATCATTACTATCTATAATTAAAAGT
ACTGCTCCTTAAAGGCAAACAGCTGGGTCGCAGGCTGGTACACCCCGTACTGGAGCTTGCGCGAC
CCGGCCAAGAGCGGGCCCATGTTGATCACCTTGCACTTGAAGTAGCTCACCTCAAACGCCGCACA
CGTCGGGTCCTGGAGAATCATCACCAGGGGCATGGGCTCCAACCGGAGCACATGGTTGTACGCCG
CGTCCACCAACCGCTTGGACGGAAGGAACGGCTGCATGGTGCCCTGGTCGAGCAACGTCTTCACA
AGCCGGCGCGCCTGGATGGTGGTGTTGGGCAACCGCTCACCCTTGAGCCTGATGGCCGCTTTGAG
CCGCTCGTCCTGGTCGTGTGGCATGGCGTCCTCCTCCGCGGCTGCAGCGTTCATCTGCTCGACGT
CATTGGCAAAAATGATGTCGTTGCGCTTGAACTTGGTCATGTAGT
Found at i:124232 original size:19 final size:19
Alignment explanation
Indices: 124186--124233 Score: 69
Period size: 19 Copynumber: 2.5 Consensus size: 19
124176 TACACTCTAT
*
124186 CACAACAAATCCAAACCTC
1 CACAACAATTCCAAACCTC
* *
124205 CACAACAATTCCGAATCTC
1 CACAACAATTCCAAACCTC
124224 CACAACAATT
1 CACAACAATT
124234 TTAAATATCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.44, C:0.38, G:0.02, T:0.17
Consensus pattern (19 bp):
CACAACAATTCCAAACCTC
Left flanking sequence: Indices 123686 -- 124185
TGTTGAGCCCATGCTTCTTGGAAAGTATTCGGTAGGCGATGGGACGGAGGTTGGACGGCAGTAAC
CGCACGGGAAGACTGTCCATTACGCGTCTGATGCGATCGGACGCGTTTGAAAAATGTGGTGAGGA
AGGCAGTGGAGAAGGTGGGAAAAAGAAAGGGTGGGAGAGGGGGGGTATAGTGTGTGTTTAGAGTG
GTTCTATAGAGTCGATTGAGTCTACTGAGTCTAATGATGAGGTAGTGTAACTTTTGTTAGTGGTC
ACTTGTACTTCGTGGTTCTTCGTGTGGTGCGAATGTAGATCGTAGGTGGAGTAGACTACCTGATG
CCATTGAACGCGAATAAAGGGCTGGAAAGCAGAGCAGCTTTGTGATGAAGCGTCAAAGCCTGGTA
GTATATCACTAGGCGAAAGGATACTGTATTTCGAGCCGTGAAACATAGCACACCGGAAGGTTGTC
TTGAGTTCTGCTGGTGCCAGTACGCTATTGAAAGATACACTCTAT
Right flanking sequence: Indices 124234 -- 124733
TTAAATATCTCCACTTTTTCGCTACACCCTTGCTCCATCTTGTCTATAATCTATCAAAACGTCTC
TGCCTCCACCTGGTGGCATATCGCCTCAAACTCGTCCTCGGGAAGCGCCACCGTCGCCTTGAGAT
TGCTGATCTCGTAGTACTGCAACTCCAGCATGATCTGCTTCACCAACTGGTACCCCTTGAGCAAG
TCCACCATCCGGGCGTCGCGCTCGTCCTGCGAGGTGCCCCGTTTGGCAATCTTCATCGGGATAAG
CTCCTCGCGGAGACAGCTAAGCATCTGGCGAAGAAACCGCTCGTCCTCGGCCGAGAGCGGCTGGC
GGATCTCAGCCACCCCCTTCCCGATCTTGGCAAACGCCGCCAGCTTCGACGTGCGGTCCGCCACC
CCCTTCACCTGGTACGTGTACAACTTGATCTTGCTGTCGACCTCGGTGGAGCTGTACCGCTCGTA
GATCGCAGCCAACGCCCGGTTGACCGCCACCACCAGCCCCATTTT
Found at i:125393 original size:15 final size:15
Alignment explanation
Indices: 125373--125408 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
125363 ATTTGTAGCT
125373 GGGTTGGAAACTGGC
1 GGGTTGGAAACTGGC
* *
125388 GGGTTGGTAACTGGT
1 GGGTTGGAAACTGGC
125403 GGGTTG
1 GGGTTG
125409 ATAATTAGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.14, C:0.08, G:0.50, T:0.28
Consensus pattern (15 bp):
GGGTTGGAAACTGGC
Left flanking sequence: Indices 124873 -- 125372
TACTTTTTTGTGAGCTGGTCGAGCTGGAACCGCTGGTTTTCGATCTTGGTGGCGAGATCGCGGCT
CTGGTGCTTCCGCTCGCGGTCCAGACGCTCGCGGGCCTCCCATTCTGCGTGGAGGCGCTCTTTTT
CGGCTGTTATCGCCTCCTTTAGTCTCTGGTCAAAGTCGCGGCTCGCCAGGAGCTCGGTTTCGCGC
CGGAGACGGCTTTCAAGGCTCTCCTGCTCCTTTTCAAGCCGTTTTTCAAGCTCTTCGCGCTCCTG
GCGCCGCTGGGACTCGAGCCGGTCGAGTTCCTGGCGGTGGAGAAGCCTTTGCTGCAGCAATTCCA
GCTGGAGCTGCTCGATCTTGCGGTCTCGCCGGTCCAAGTCGCTTTTGAGCTGAATGGTGTCGCGG
TTGTGCTGGTTGCGCGCCCGCTGGAGCTCGTCCTGGGCTTGTGAGAGCTCTGTGGCCAAGTTGGA
GCCCGCCCAGTCCGTCGGGGTGGGGTAATCGGTGGATTTGTAGCT
Right flanking sequence: Indices 125409 -- 125908
ATAATTAGTGGGTTGGTACTCAGTGGGCGGGTAATCGGTGGGTTTGTGGGTGAAATCGTCGCTGT
TTATCAGCGGGTAAAGACTTCCCGCGGCCTTTAAGCGTCTGTTCTTCTCGATGAGCTCGTCCACC
ACGTCGTCCGAGCCGGAGCTCGGAGCAGTGGGGTTGGGGATGAGGGACTTGAGCAGTGCCCAGAG
GCCAGGGTGGGAGCTGAGCTTCTTGGGCTCGGGCTCAGGTTTGCTGATGCGAAACGCCGAGGGAG
CCCGGTAGCGTGGAGGAGACGCTATCGGTTCTGTGAACTTGGGGAGGGACCATGCGGGCTCGGGG
CGTGCTGTGTAGGGAGTTGGCGGTTTGTAGGAGTAGTCCAGTGCAGAGAACTCCCCTGGAATGTG
CGCAGGCGGTGCGGACGCGTACTGGCTCAGGCGTGAGTTCCACTGCCTCAGGAGCCGGCCCATGA
TGAGTTGATTGTTTACAGGATGCGCGACGCGTGTGAAAAACGCGT
Found at i:129452 original size:120 final size:120
Alignment explanation
Indices: 128979--129427 Score: 650
Period size: 120 Copynumber: 3.7 Consensus size: 120
128969 CTGGTGGACC
* * ** * * * *
128979 ACCTTGTCGCCCTCGGTGAGGGGGAAGGCAAGGGTGTCCAC-GACGTCCTTAGCGTCCTGCTGGA
1 ACCTTGTCACCCTCGGTGAGAGGGAAACCAAGAGTGTCAACAG-CGTCCTTAACATCCTGCTGGA
* * *
129043 CCTGGTCGTGAGCGTCGGAGATCACGGATCTCTTGGGCTCGGTAAGCTGGTGAAGA
65 CCTGGTCGTGAGCGTCAGAGATCACAGATCTCTTGGGCTCGGTAAGCTGGTGAAGG
* *
129099 ACCTTGTCACCCTCGGTAAGAGGGAAACCAAGAGTGTCAACAGCGTCCTTAACATCTTGCTGGAC
1 ACCTTGTCACCCTCGGTGAGAGGGAAACCAAGAGTGTCAACAGCGTCCTTAACATCCTGCTGGAC
*
129164 CTGGTCGTGGGCGTCAGAGATCACAGATCTCTTGGGCTCGGTAAGCTGGTGAAGG
66 CTGGTCGTGAGCGTCAGAGATCACAGATCTCTTGGGCTCGGTAAGCTGGTGAAGG
*
129219 ACCTTGTCACCCTCGGTGAGAGGGAAACCAAGAGTGTCAACAGCGTCCTTAACATCTTGCTGGAC
1 ACCTTGTCACCCTCGGTGAGAGGGAAACCAAGAGTGTCAACAGCGTCCTTAACATCCTGCTGGAC
*
129284 CTGGTCGTGGGCGTCAGAGATCACAGATCTCTTGGGCTCGGTAAGCTGGTGAAGG
66 CTGGTCGTGAGCGTCAGAGATCACAGATCTCTTGGGCTCGGTAAGCTGGTGAAGG
* * * * * *
129339 ACCTTGTCACCCTCGGTGAGAGGGAACCCAAGGGTGTCCAC-GATGTCCTTAGCGTCCTGCTGGA
1 ACCTTGTCACCCTCGGTGAGAGGGAAACCAAGAGTGTCAACAG-CGTCCTTAACATCCTGCTGGA
* *
129403 CCTGTTCGTGAGCGTCAGAAATCAC
65 CCTGGTCGTGAGCGTCAGAGATCAC
129428 CGACTTCTTG
Statistics
Matches: 302, Mismatches: 25, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
119 1 0.00
120 300 0.99
121 1 0.00
ACGTcount: A:0.21, C:0.25, G:0.32, T:0.22
Consensus pattern (120 bp):
ACCTTGTCACCCTCGGTGAGAGGGAAACCAAGAGTGTCAACAGCGTCCTTAACATCCTGCTGGAC
CTGGTCGTGAGCGTCAGAGATCACAGATCTCTTGGGCTCGGTAAGCTGGTGAAGG
Left flanking sequence: Indices 128479 -- 128978
CTGGAGTTCAACCAGGACTTTAGCCGTCCTGCGGGCCCCCCTCCTCCCAAGAAAGAGAACTACGG
TGACCGCGGGTATGACCAGCCCAACTACGGGGCTCCTATGCAGCCGCAGTACTCGAACCAGTCGT
ACGGTGGCTATGCGCAGTACCCTCCTCCCTCCACCAACTACTACCCGCCCCAGCAGTACCAGCAG
GCGCCCCAGCAGGCGCCTCAGCCTGCGCCCGAACAGGGCCAGCCTCCCAAGGAGCACGGCCACTT
GCGCAAGTTTGGGGGCAAGTTGGGTAACGCTGCCATCTTTGGTGCCGGTGCCACCATTGGTAGCG
ACATTGTCAACTCGATTTTTTAACGGATACAGCGTAATGAATAAGGTATAATTTGGGCTATACAA
AAGGTCAAGACGACTAGAACGAAAGAGTGCGAAAGGAGTGTGCGAAGGGTATCGATTAGACTGAA
AAACTAAATCATAGGCACGTTTAGGGAGAGGTGAGCTGGTGGACC
Right flanking sequence: Indices 129428 -- 129927
CGACTTCTTGGCGATAGTGGGCTGGGGAGCGGGAGCCTGAGACTCGCCGCCAATCCCGATCTCAC
CACCGATCCCAAACCCGGTGTGGATGTCACCAAGGCTACCAGTGAAGCCAGCTTCAGCCTGGAAC
TCGCCCTCGGGCTTGGGGAGGAATACGGGAGCAGCGGCGGTGGCCACGATGGCAGCAGCGATAGA
AACGAGAGAAGAGAATTGCATTGGGATGGTTGTGGTCAGGAACACCAGGAACCAACCTATTTATA
TTGTCGAAACAACCACGGTGGCCCTGCTTTTGCTTTTGTGGTGTTGAGGGGTTCACTCAAACAAT
AGCCACATGGAATGGGTGTGGTGCCTTCGGCTGTGGGTATGAATCTTGTGACTGCTTGGAGTGTC
TAAATGGCTGCAAAAGGGTCTACGCGAAACGCTAGGATTCCGCGTAGTGATGGCCATGGTCGAAA
ACCGAGCCTCTACTATTACTACACCTTAAGCTGGTGAGCAAATTT
Found at i:134070 original size:16 final size:17
Alignment explanation
Indices: 134051--134082 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
134041 GTGGCTATGT
134051 GGTTGGG-TTGTTGTGG
1 GGTTGGGTTTGTTGTGG
134067 GGTTGGGTTTGTTGTG
1 GGTTGGGTTTGTTGTG
134083 TGGGGTTGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.00, C:0.00, G:0.53, T:0.47
Consensus pattern (17 bp):
GGTTGGGTTTGTTGTGG
Left flanking sequence: Indices 133551 -- 134050
CGGCAGGTGATGTTGACCATCTGCAAGTCCTTGGTGCCCGTCAACAGCGCCACGTTGCGCGGCTT
CGCCCGCACGTCGTAGACAATGGGGCGCTGGAACCACGGCATGATGATGTGGGTACCCTCAGGGT
AGATCCGGGGCTGCACACCGTTCAACCGCGAGTAGACGATACCCCGCTGACCACCGTCCACGTTG
AAGAGCGCGTTTTCGCCAATCAACATCACACCTCCGAGCAAGAGCACCCCGCCCACGCCGGCGAA
CATCCCGAAGGGGTTGCGGAAGTTGCGGGGACCGCCGGTGGTCTTGGTGGCGGCCTTGCTGCGTG
CCTGCTGCGCCCGACGACGGAGTTCTTCGGAGAGGTTCTTCCAATTGGGGTCGGACATCGTTGGC
TTTGGTTGCGGAGCAGTTAATTTTTCGGGGGTTTGCAGTTTGCCACTTGAGCCGCAGCGCGAAGG
GGTTTGAAGTGGAGGGAAGGAAGGAAAGAAGGAGGGTGGCTATGT
Right flanking sequence: Indices 134083 -- 134582
TGGGGTTGAGTGGCTATGCGTGGTATCTATAGTGTAGTTGGTGTGTTGTTTTTACAGCGTAGAGG
TTGGTTTGGCGGTGGTCTGTTGTGAGACGCATACCCGGAATGAGCCCATGAAGTAATGGAATGGG
TGGAAAGGGGGATTTTAGACGGTATTTGAGAGGCAAGAGAATAGTTGGAAATGTGTTTGTTACTG
TTATCTTTTCTAATTGTGGTCATTCGGTGGATTATATTTCCTGAGAGCTGCTATTCCGAGTACAA
CCGGAAAGATCTGGAAATAGAATAATGGGTTACTGATGGAACAAATAAACACCAACAATTGTGAC
AAATGTGACAAATGTGACAATTCTGTCAAATTTGACAATTGACTACTGGTTTTGTTCAGAGCGTG
GTATCAAAATTACACCAGGAGTATAGGTCCTTCCTGGTTAATACCGCGCATCGGACCCATCCAGA
CTTCCAGAGCACATTGTAGAACACAATCCAACCAACGTGCAGCCA
Found at i:134414 original size:9 final size:9
Alignment explanation
Indices: 134397--134427 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
134387 ATAAACACCA
*
134397 ACAATTGTG
1 ACAAATGTG
134406 ACAAATGTG
1 ACAAATGTG
134415 ACAAATGTG
1 ACAAATGTG
134424 ACAA
1 ACAA
134428 TTCTGTCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.45, C:0.13, G:0.19, T:0.23
Consensus pattern (9 bp):
ACAAATGTG
Left flanking sequence: Indices 133897 -- 134396
GTTCTTCGGAGAGGTTCTTCCAATTGGGGTCGGACATCGTTGGCTTTGGTTGCGGAGCAGTTAAT
TTTTCGGGGGTTTGCAGTTTGCCACTTGAGCCGCAGCGCGAAGGGGTTTGAAGTGGAGGGAAGGA
AGGAAAGAAGGAGGGTGGCTATGTGGTTGGGTTGTTGTGGGGTTGGGTTTGTTGTGTGGGGTTGA
GTGGCTATGCGTGGTATCTATAGTGTAGTTGGTGTGTTGTTTTTACAGCGTAGAGGTTGGTTTGG
CGGTGGTCTGTTGTGAGACGCATACCCGGAATGAGCCCATGAAGTAATGGAATGGGTGGAAAGGG
GGATTTTAGACGGTATTTGAGAGGCAAGAGAATAGTTGGAAATGTGTTTGTTACTGTTATCTTTT
CTAATTGTGGTCATTCGGTGGATTATATTTCCTGAGAGCTGCTATTCCGAGTACAACCGGAAAGA
TCTGGAAATAGAATAATGGGTTACTGATGGAACAAATAAACACCA
Right flanking sequence: Indices 134428 -- 134927
TTCTGTCAAATTTGACAATTGACTACTGGTTTTGTTCAGAGCGTGGTATCAAAATTACACCAGGA
GTATAGGTCCTTCCTGGTTAATACCGCGCATCGGACCCATCCAGACTTCCAGAGCACATTGTAGA
ACACAATCCAACCAACGTGCAGCCAGTTCACCATGGCTTGTGACTAGCCTACCCCACCAACTGCA
TTCCCCGCCCTCGCCAAAACCACTATCATCAAATTCATTAGTCTATAAATGCTACGAGGGAACCC
CCTCAAAGTTATTGTTCTCGTTGTACTCGTGGATGCGCCGGCGCCAGTACGCCTTGCGGTTGGTC
TGGATCGGGTTGATCCAAAACTTCTCCGCAAGAAAGAGCAAAAGTAGAAACACCGACACCGAAAA
CGACGGCGCAATCGACTTGACAAGCTGCGACGGCGTGCTGGTGGTCTTGTAGGGACACTGGGCGT
ACGGACCGCCAGTCACAAAACAGTCGGCGACCGTGACGTCATTGA
Found at i:134437 original size:18 final size:18
Alignment explanation
Indices: 134397--134447 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
134387 ATAAACACCA
* * *
134397 ACAATTGTGACAAATGTG
1 ACAAATGTGACAATTCTG
134415 ACAAATGTGACAATTCTG
1 ACAAATGTGACAATTCTG
* *
134433 TCAAATTTGACAATT
1 ACAAATGTGACAATT
134448 GACTACTGGT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 28 1.00
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.31
Consensus pattern (18 bp):
ACAAATGTGACAATTCTG
Left flanking sequence: Indices 133897 -- 134396
GTTCTTCGGAGAGGTTCTTCCAATTGGGGTCGGACATCGTTGGCTTTGGTTGCGGAGCAGTTAAT
TTTTCGGGGGTTTGCAGTTTGCCACTTGAGCCGCAGCGCGAAGGGGTTTGAAGTGGAGGGAAGGA
AGGAAAGAAGGAGGGTGGCTATGTGGTTGGGTTGTTGTGGGGTTGGGTTTGTTGTGTGGGGTTGA
GTGGCTATGCGTGGTATCTATAGTGTAGTTGGTGTGTTGTTTTTACAGCGTAGAGGTTGGTTTGG
CGGTGGTCTGTTGTGAGACGCATACCCGGAATGAGCCCATGAAGTAATGGAATGGGTGGAAAGGG
GGATTTTAGACGGTATTTGAGAGGCAAGAGAATAGTTGGAAATGTGTTTGTTACTGTTATCTTTT
CTAATTGTGGTCATTCGGTGGATTATATTTCCTGAGAGCTGCTATTCCGAGTACAACCGGAAAGA
TCTGGAAATAGAATAATGGGTTACTGATGGAACAAATAAACACCA
Right flanking sequence: Indices 134448 -- 134947
GACTACTGGTTTTGTTCAGAGCGTGGTATCAAAATTACACCAGGAGTATAGGTCCTTCCTGGTTA
ATACCGCGCATCGGACCCATCCAGACTTCCAGAGCACATTGTAGAACACAATCCAACCAACGTGC
AGCCAGTTCACCATGGCTTGTGACTAGCCTACCCCACCAACTGCATTCCCCGCCCTCGCCAAAAC
CACTATCATCAAATTCATTAGTCTATAAATGCTACGAGGGAACCCCCTCAAAGTTATTGTTCTCG
TTGTACTCGTGGATGCGCCGGCGCCAGTACGCCTTGCGGTTGGTCTGGATCGGGTTGATCCAAAA
CTTCTCCGCAAGAAAGAGCAAAAGTAGAAACACCGACACCGAAAACGACGGCGCAATCGACTTGA
CAAGCTGCGACGGCGTGCTGGTGGTCTTGTAGGGACACTGGGCGTACGGACCGCCAGTCACAAAA
CAGTCGGCGACCGTGACGTCATTGAAATCGATCCACACAGGGTAG
Found at i:136922 original size:11 final size:11
Alignment explanation
Indices: 136906--136947 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
136896 CCCTAAGCCT
136906 GACTGCCACCG
1 GACTGCCACCG
*
136917 GACTGCCACGG
1 GACTGCCACCG
136928 GACTGCCACCG
1 GACTGCCACCG
*
136939 GGCTGCCAC
1 GACTGCCAC
136948 TGCGCTTGGC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.17, C:0.43, G:0.31, T:0.10
Consensus pattern (11 bp):
GACTGCCACCG
Left flanking sequence: Indices 136406 -- 136905
AGGAGACGAGGAGAGGCGGGGGAGAGGAGGGAAGGAGGAGGGAATGCGAGAGGGAGGAGGGATGG
GCCGGGTGAGGAGGGCGGTGGACGTGATGAAATTGTCGGAAAATGTCGGAAGAGAGCCTGGAGGT
TACGAGGGACGAGAACAGAGTGACCAAACATAGTAGAGATTATATAGAATAGCAGATAAAGAAAA
GAGCATAGAGAGGATATCAAAGAGAGAGAGAGAACGAAGATCTACGAAGAAGAACCGTAAAAACG
ACTCTCCAAGCAGAGTTTCATCCCTGAGGCGTCTGCATCGTTGTCTGTTGGTGTTGTCCGTACCA
CGCTACTGTCTGGTGGCTGGCGTCGGAATTTCACCTCGCAGGTATCGGTTGACGTAGCCGAGCCG
GCCAGGCACGGAACAATGGGCCAGGAACCGCTTGCAACGTCCCTATTCAGGGGGGCTAATCAGTT
GTGATTCTCGCTATGCTAAATATGGCCAGGTTTGTCCCTAAGCCT
Right flanking sequence: Indices 136948 -- 137447
TGCGCTTGGCTACGGGCTGGGCCACCGACACCTACGGTTCCGGGCCTTCCCCAGACAACGCAGCA
CGCGGCAGCCCTGGGATACGCGCCCCAGTTTCGGGTTGGTGCCTGATCCAGCCTCAACGCACTGT
CACCTGGGCATGTGCATCTATCGATGAAACGATCGATGGTGGAAGATGGTGAAAGATGGTGTGAA
GAGGCAGGTAAGCAAAGTCCTGTGTAAGTGATAGCTGAACCACCTGAACCACCGACCTAACCCAC
CGACCTAACCCACCCTACACAGTCGTACTCACACAAGTACCCTCCAAACCACACTCCACACAACA
CCCCACACACACTCAACACTACTTCATGCATTCTCTATGTACGGTTACTTGGTGATCTCAAAGCT
CCAGGGGAACTGCAAATGAACCGTTTTGTCGTCGTCAATGAATTTGGTGGTGGCAGAGTAGTTGC
CACGCGCCAAAAACCCCAGCGGAGCCTCCACCTCGTGGAACTTGC
Found at i:136931 original size:22 final size:22
Alignment explanation
Indices: 136906--136947 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
136896 CCCTAAGCCT
136906 GACTGCCACCGGACTGCCACGG
1 GACTGCCACCGGACTGCCACGG
*
136928 GACTGCCACCGGGCTGCCAC
1 GACTGCCACCGGACTGCCAC
136948 TGCGCTTGGC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.17, C:0.43, G:0.31, T:0.10
Consensus pattern (22 bp):
GACTGCCACCGGACTGCCACGG
Left flanking sequence: Indices 136406 -- 136905
AGGAGACGAGGAGAGGCGGGGGAGAGGAGGGAAGGAGGAGGGAATGCGAGAGGGAGGAGGGATGG
GCCGGGTGAGGAGGGCGGTGGACGTGATGAAATTGTCGGAAAATGTCGGAAGAGAGCCTGGAGGT
TACGAGGGACGAGAACAGAGTGACCAAACATAGTAGAGATTATATAGAATAGCAGATAAAGAAAA
GAGCATAGAGAGGATATCAAAGAGAGAGAGAGAACGAAGATCTACGAAGAAGAACCGTAAAAACG
ACTCTCCAAGCAGAGTTTCATCCCTGAGGCGTCTGCATCGTTGTCTGTTGGTGTTGTCCGTACCA
CGCTACTGTCTGGTGGCTGGCGTCGGAATTTCACCTCGCAGGTATCGGTTGACGTAGCCGAGCCG
GCCAGGCACGGAACAATGGGCCAGGAACCGCTTGCAACGTCCCTATTCAGGGGGGCTAATCAGTT
GTGATTCTCGCTATGCTAAATATGGCCAGGTTTGTCCCTAAGCCT
Right flanking sequence: Indices 136948 -- 137447
TGCGCTTGGCTACGGGCTGGGCCACCGACACCTACGGTTCCGGGCCTTCCCCAGACAACGCAGCA
CGCGGCAGCCCTGGGATACGCGCCCCAGTTTCGGGTTGGTGCCTGATCCAGCCTCAACGCACTGT
CACCTGGGCATGTGCATCTATCGATGAAACGATCGATGGTGGAAGATGGTGAAAGATGGTGTGAA
GAGGCAGGTAAGCAAAGTCCTGTGTAAGTGATAGCTGAACCACCTGAACCACCGACCTAACCCAC
CGACCTAACCCACCCTACACAGTCGTACTCACACAAGTACCCTCCAAACCACACTCCACACAACA
CCCCACACACACTCAACACTACTTCATGCATTCTCTATGTACGGTTACTTGGTGATCTCAAAGCT
CCAGGGGAACTGCAAATGAACCGTTTTGTCGTCGTCAATGAATTTGGTGGTGGCAGAGTAGTTGC
CACGCGCCAAAAACCCCAGCGGAGCCTCCACCTCGTGGAACTTGC
Found at i:137207 original size:13 final size:13
Alignment explanation
Indices: 137191--137221 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
137181 ACCACCTGAA
137191 CCACCGACCTAAC
1 CCACCGACCTAAC
137204 CCACCGACCTAAC
1 CCACCGACCTAAC
137217 CCACC
1 CCACC
137222 CTACACAGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.29, C:0.58, G:0.06, T:0.06
Consensus pattern (13 bp):
CCACCGACCTAAC
Left flanking sequence: Indices 136691 -- 137190
GAGGCGTCTGCATCGTTGTCTGTTGGTGTTGTCCGTACCACGCTACTGTCTGGTGGCTGGCGTCG
GAATTTCACCTCGCAGGTATCGGTTGACGTAGCCGAGCCGGCCAGGCACGGAACAATGGGCCAGG
AACCGCTTGCAACGTCCCTATTCAGGGGGGCTAATCAGTTGTGATTCTCGCTATGCTAAATATGG
CCAGGTTTGTCCCTAAGCCTGACTGCCACCGGACTGCCACGGGACTGCCACCGGGCTGCCACTGC
GCTTGGCTACGGGCTGGGCCACCGACACCTACGGTTCCGGGCCTTCCCCAGACAACGCAGCACGC
GGCAGCCCTGGGATACGCGCCCCAGTTTCGGGTTGGTGCCTGATCCAGCCTCAACGCACTGTCAC
CTGGGCATGTGCATCTATCGATGAAACGATCGATGGTGGAAGATGGTGAAAGATGGTGTGAAGAG
GCAGGTAAGCAAAGTCCTGTGTAAGTGATAGCTGAACCACCTGAA
Right flanking sequence: Indices 137222 -- 137721
CTACACAGTCGTACTCACACAAGTACCCTCCAAACCACACTCCACACAACACCCCACACACACTC
AACACTACTTCATGCATTCTCTATGTACGGTTACTTGGTGATCTCAAAGCTCCAGGGGAACTGCA
AATGAACCGTTTTGTCGTCGTCAATGAATTTGGTGGTGGCAGAGTAGTTGCCACGCGCCAAAAAC
CCCAGCGGAGCCTCCACCTCGTGGAACTTGCGCTCGTACCACGGCTTGTCGCTGGTGTTGGGCGC
ATACAGCCCGAGGGGCTCCTCGACCTTGTCCACGGGAATCAGCTTCTTCTTGACCGAGTGCAAGT
ACTTGAGCCCGGTGATGATCTCGTGCTGCACCCGGAACTTGACGTACAACTGGTACACCAGCTTC
TCCTTGATGGTGAACTTGATGTCCTTGTTGATGGTGTTGCCGTCCGCGTCCTCCAAGTTGATGCG
GATGGGGGCAATGGGCTGGTCGGGGAACTCGAGCCCCATCTCCAC
Found at i:138159 original size:15 final size:15
Alignment explanation
Indices: 138120--138167 Score: 60
Period size: 19 Copynumber: 2.9 Consensus size: 15
138110 TGTTTACGGG
138120 TGGTGGTGGGTGGTA
1 TGGTGGTGGGTGGTA
138135 TGGGTAGTGGTGGGTGGTA
1 T--G--GTGGTGGGTGGTA
138154 TGGTGGTGGGTGGT
1 TGGTGGTGGGTGGT
138168 GGCGAGTGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
15 13 0.45
17 2 0.07
19 14 0.48
ACGTcount: A:0.06, C:0.00, G:0.60, T:0.33
Consensus pattern (15 bp):
TGGTGGTGGGTGGTA
Left flanking sequence: Indices 137620 -- 138119
GGTGAACTTGATGTCCTTGTTGATGGTGTTGCCGTCCGCGTCCTCCAAGTTGATGCGGATGGGGG
CAATGGGCTGGTCGGGGAACTCGAGCCCCATCTCCACAATCACCACCGTGCGCTTGTCGCCCGCC
TTGACGGGGTACGCCTGCGCGTTCTCGGTGATCCCCAACGACGCCTTCCACTTGGCAAGCGACTC
GTCCTCGGCATCCAACTTGGCGTACTCGGCAATCGTCTTCTTCTCGCCCACGTTGTAGCCTTGCA
CGGTCTCGGGAACCAAATCGTCGTCAACACCAGACATGTTGTGAGTTACGTGGGAAAAAAATGCG
GGCCTCTAGCTATATGGTTGATTTTGTCGCGCGTATATTAGGCGCGTCAAACATTCCTGGTTGAG
GCGCGGATCAGCGTCGCGAGGTGGCCCAACGGTAGTCAAGGGGAGACAGGAGAGACACCGGGGAG
CGCACACCCGGTCAGGTTATCGGGGTGGTGGTGTGTGTTTACGGG
Right flanking sequence: Indices 138168 -- 138667
GGCGAGTGATGCGGATGGTGGCGAGTGGCTCGGTTGGGTGGATGTTGGGTTCGCTGATACGCTGT
CTACGTTGACGTATGTTCTCTCTTTTGGTGTTTATCTACTTCTTTACCTGTTCTTCTGCTCCTGT
TCTTCTGTTATTATTCTTCTGTTCTGTTCTTCTGTTCTGTTCGTCTCTTCTGTTCCTCTGTTGCA
CTTTGGTCCTTCTTCTCCTTCCCTACCGTCTCGTCTCCTTCCTCGTATTATCCCTGTGATCAGAT
CTCCTCGAAAATTGCTTTTGCCGGGGACTCCTTCCGGTTCGGGTAAATTCCGTGGCCCCAGTTGA
CAGCAACACCCACCGTAGAATCAGTTCACCCGTGCATTCGTCACTCTCCGCACCGCGAGCGAAAA
CCATGTGGTGGGCGTGGCTCGTGGTGCTCTGGGCCCTCGCGGTCTACGACGACGGCGACCCTGTA
GACGACACCCCCCTAGCCCGCCAGCCACGGGGACTGGAACGACCG
Found at i:138166 original size:19 final size:19
Alignment explanation
Indices: 138097--138162 Score: 80
Period size: 19 Copynumber: 3.5 Consensus size: 19
138087 CAGGTTATCG
* * *
138097 GGGTGGTGGTGTGTGTTTAC
1 GGGTGGTGGTGGGTG-GTAT
138117 GGGTGGTGGTGGGTGGTAT
1 GGGTGGTGGTGGGTGGTAT
*
138136 GGGTAGTGGTGGGTGGTAT
1 GGGTGGTGGTGGGTGGTAT
138155 -GGTGGTGG
1 GGGTGGTGG
138163 GTGGTGGCGA
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
18 7 0.17
19 20 0.49
20 14 0.34
ACGTcount: A:0.06, C:0.02, G:0.59, T:0.33
Consensus pattern (19 bp):
GGGTGGTGGTGGGTGGTAT
Left flanking sequence: Indices 137597 -- 138096
TGGTACACCAGCTTCTCCTTGATGGTGAACTTGATGTCCTTGTTGATGGTGTTGCCGTCCGCGTC
CTCCAAGTTGATGCGGATGGGGGCAATGGGCTGGTCGGGGAACTCGAGCCCCATCTCCACAATCA
CCACCGTGCGCTTGTCGCCCGCCTTGACGGGGTACGCCTGCGCGTTCTCGGTGATCCCCAACGAC
GCCTTCCACTTGGCAAGCGACTCGTCCTCGGCATCCAACTTGGCGTACTCGGCAATCGTCTTCTT
CTCGCCCACGTTGTAGCCTTGCACGGTCTCGGGAACCAAATCGTCGTCAACACCAGACATGTTGT
GAGTTACGTGGGAAAAAAATGCGGGCCTCTAGCTATATGGTTGATTTTGTCGCGCGTATATTAGG
CGCGTCAAACATTCCTGGTTGAGGCGCGGATCAGCGTCGCGAGGTGGCCCAACGGTAGTCAAGGG
GAGACAGGAGAGACACCGGGGAGCGCACACCCGGTCAGGTTATCG
Right flanking sequence: Indices 138163 -- 138662
GTGGTGGCGAGTGATGCGGATGGTGGCGAGTGGCTCGGTTGGGTGGATGTTGGGTTCGCTGATAC
GCTGTCTACGTTGACGTATGTTCTCTCTTTTGGTGTTTATCTACTTCTTTACCTGTTCTTCTGCT
CCTGTTCTTCTGTTATTATTCTTCTGTTCTGTTCTTCTGTTCTGTTCGTCTCTTCTGTTCCTCTG
TTGCACTTTGGTCCTTCTTCTCCTTCCCTACCGTCTCGTCTCCTTCCTCGTATTATCCCTGTGAT
CAGATCTCCTCGAAAATTGCTTTTGCCGGGGACTCCTTCCGGTTCGGGTAAATTCCGTGGCCCCA
GTTGACAGCAACACCCACCGTAGAATCAGTTCACCCGTGCATTCGTCACTCTCCGCACCGCGAGC
GAAAACCATGTGGTGGGCGTGGCTCGTGGTGCTCTGGGCCCTCGCGGTCTACGACGACGGCGACC
CTGTAGACGACACCCCCCTAGCCCGCCAGCCACGGGGACTGGAAC
Found at i:138329 original size:13 final size:13
Alignment explanation
Indices: 138280--138359 Score: 88
Period size: 13 Copynumber: 6.0 Consensus size: 13
138270 ACTTCTTTAC
*
138280 CTGTTCTTCTGCTC
1 CTGTTCTTCTG-TT
138294 CTGTTCTTCTGTT
1 CTGTTCTTCTGTT
* *
138307 ATTATTCTTCTGTT
1 -CTGTTCTTCTGTT
138321 CTGTTCTTCTGTT
1 CTGTTCTTCTGTT
* *
138334 CTGTTCGTCTCTT
1 CTGTTCTTCTGTT
*
138347 CTGTTCCTCTGTT
1 CTGTTCTTCTGTT
138360 GCACTTTGGT
Statistics
Matches: 56, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
13 34 0.61
14 22 0.39
ACGTcount: A:0.03, C:0.26, G:0.14, T:0.57
Consensus pattern (13 bp):
CTGTTCTTCTGTT
Left flanking sequence: Indices 137780 -- 138279
ATCCCCAACGACGCCTTCCACTTGGCAAGCGACTCGTCCTCGGCATCCAACTTGGCGTACTCGGC
AATCGTCTTCTTCTCGCCCACGTTGTAGCCTTGCACGGTCTCGGGAACCAAATCGTCGTCAACAC
CAGACATGTTGTGAGTTACGTGGGAAAAAAATGCGGGCCTCTAGCTATATGGTTGATTTTGTCGC
GCGTATATTAGGCGCGTCAAACATTCCTGGTTGAGGCGCGGATCAGCGTCGCGAGGTGGCCCAAC
GGTAGTCAAGGGGAGACAGGAGAGACACCGGGGAGCGCACACCCGGTCAGGTTATCGGGGTGGTG
GTGTGTGTTTACGGGTGGTGGTGGGTGGTATGGGTAGTGGTGGGTGGTATGGTGGTGGGTGGTGG
CGAGTGATGCGGATGGTGGCGAGTGGCTCGGTTGGGTGGATGTTGGGTTCGCTGATACGCTGTCT
ACGTTGACGTATGTTCTCTCTTTTGGTGTTTATCTACTTCTTTAC
Right flanking sequence: Indices 138360 -- 138859
GCACTTTGGTCCTTCTTCTCCTTCCCTACCGTCTCGTCTCCTTCCTCGTATTATCCCTGTGATCA
GATCTCCTCGAAAATTGCTTTTGCCGGGGACTCCTTCCGGTTCGGGTAAATTCCGTGGCCCCAGT
TGACAGCAACACCCACCGTAGAATCAGTTCACCCGTGCATTCGTCACTCTCCGCACCGCGAGCGA
AAACCATGTGGTGGGCGTGGCTCGTGGTGCTCTGGGCCCTCGCGGTCTACGACGACGGCGACCCT
GTAGACGACACCCCCCTAGCCCGCCAGCCACGGGGACTGGAACGACCGCTTGTCCCACATCACTT
TGGGTGGCCCCACCCGGTGTGCGGAAACAAGTACTTCCACGAGGTGGGGGGCCACTTTGACGCCC
GGTTCTTCCGCGCGCGGCCCCGCTACTACGCGAACCAGGCCACGTTGTGGCGGCTCGCGCGGGCG
TGGCTCGGTTTTGCCCACACCCACCAGCTCGACACCTGGTTGGCC
Found at i:138337 original size:18 final size:18
Alignment explanation
Indices: 138314--138352 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
138304 GTTATTATTC
138314 TTCTGTTCTGT-TCTTCTG
1 TTCTGTTC-GTCTCTTCTG
138332 TTCTGTTCGTCTCTTCTG
1 TTCTGTTCGTCTCTTCTG
138350 TTC
1 TTC
138353 CTCTGTTGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 2 0.10
18 18 0.90
ACGTcount: A:0.00, C:0.26, G:0.15, T:0.59
Consensus pattern (18 bp):
TTCTGTTCGTCTCTTCTG
Left flanking sequence: Indices 137814 -- 138313
CGTCCTCGGCATCCAACTTGGCGTACTCGGCAATCGTCTTCTTCTCGCCCACGTTGTAGCCTTGC
ACGGTCTCGGGAACCAAATCGTCGTCAACACCAGACATGTTGTGAGTTACGTGGGAAAAAAATGC
GGGCCTCTAGCTATATGGTTGATTTTGTCGCGCGTATATTAGGCGCGTCAAACATTCCTGGTTGA
GGCGCGGATCAGCGTCGCGAGGTGGCCCAACGGTAGTCAAGGGGAGACAGGAGAGACACCGGGGA
GCGCACACCCGGTCAGGTTATCGGGGTGGTGGTGTGTGTTTACGGGTGGTGGTGGGTGGTATGGG
TAGTGGTGGGTGGTATGGTGGTGGGTGGTGGCGAGTGATGCGGATGGTGGCGAGTGGCTCGGTTG
GGTGGATGTTGGGTTCGCTGATACGCTGTCTACGTTGACGTATGTTCTCTCTTTTGGTGTTTATC
TACTTCTTTACCTGTTCTTCTGCTCCTGTTCTTCTGTTATTATTC
Right flanking sequence: Indices 138353 -- 138852
CTCTGTTGCACTTTGGTCCTTCTTCTCCTTCCCTACCGTCTCGTCTCCTTCCTCGTATTATCCCT
GTGATCAGATCTCCTCGAAAATTGCTTTTGCCGGGGACTCCTTCCGGTTCGGGTAAATTCCGTGG
CCCCAGTTGACAGCAACACCCACCGTAGAATCAGTTCACCCGTGCATTCGTCACTCTCCGCACCG
CGAGCGAAAACCATGTGGTGGGCGTGGCTCGTGGTGCTCTGGGCCCTCGCGGTCTACGACGACGG
CGACCCTGTAGACGACACCCCCCTAGCCCGCCAGCCACGGGGACTGGAACGACCGCTTGTCCCAC
ATCACTTTGGGTGGCCCCACCCGGTGTGCGGAAACAAGTACTTCCACGAGGTGGGGGGCCACTTT
GACGCCCGGTTCTTCCGCGCGCGGCCCCGCTACTACGCGAACCAGGCCACGTTGTGGCGGCTCGC
GCGGGCGTGGCTCGGTTTTGCCCACACCCACCAGCTCGACACCTG
Found at i:139985 original size:16 final size:16
Alignment explanation
Indices: 139964--140006 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 16
139954 TGTACCTCTT
139964 CCCATCTCTAGTCCTA
1 CCCATCTCTAGTCCTA
139980 CCCATCTACTCTAGTCCTA
1 CCCA--T-CTCTAGTCCTA
139999 CCCATCTC
1 CCCATCTC
140007 CACCCACCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
16 7 0.29
17 1 0.04
18 1 0.04
19 15 0.62
ACGTcount: A:0.19, C:0.47, G:0.05, T:0.30
Consensus pattern (16 bp):
CCCATCTCTAGTCCTA
Left flanking sequence: Indices 139464 -- 139963
CGAGGATTTTAGAGGTGGCAGAGTCGGTGGGTGAGCTCACGAAGGAGCGGGTGGCGGAGCGATTG
GCGGGGCGGAGGCGTGAGGCCGTGGTGGTGGCCGCTGCCGCAGCCGAGACGACGTGAGGGCTTAT
TACTAAGGTCGATATATTATCACCGCCCTTGGTATTACGAGGTATCCGTTGCGTTGACCCTAACC
AGGCACTATCAACAATACCATCAAGATTGGTTAATAATCTTACAAAACACATTCTAAGTGGTGGT
CATTTATGTCTTCCTTGTCCATTACCAGGCACTATCATGAATGATATGGAGTTCGCGTAGCTTTC
GTACCAGTGTAATCATTAGTAAAGACTCAACTTCATTGTTCTATAAGCTAAACCACATCTAATAC
CATAATCAGTCAAACAATACACTCAGCTCGATCTCTCCTCTTGAACCATTACCCCACAGCTTCAT
CTCGCGTCTTAGTCAGCTCAGCCTACCCTAGCCAGTGTACCTCTT
Right flanking sequence: Indices 140007 -- 140506
CACCCACCTCCTCCACTACCACCTACCCGATCCAATCCCACCTATGACGTCAACGTCACAACACC
ACACCATCACCACCCATACCACCACCACTACCCCACTACCACAACCACCCCTCGTAATAACACTA
CTCCCACCTCTACCCCACCACCTCTACCCCAACACTACCCTACCTCCCCACTTCCTTCACTTTCC
CACACTTCTTCCCCACCGCGCGCACGAAACCGATCAAGCCATATCCATCGTCGAGGCACCCACAC
CACACACCCGCCCTCACGAGCCATGAGCAACCCCGACGAAGTAAGTGTGTCCCCTGCCAACCCAT
TGGTCCCCCGTGTTCTCCACTAACCCCAGATCCGCGCCAAGCGTTTGGCCCGACTCGGTGGCAAC
GGCCTGAGGCTGCCAGCGCTGCTGCTGGCGTCTGTGAACAGCAGTGACGGCAAACAGAAGCCTGC
GAGCCCGGCCCCCGTGGCCGCCAGCCCGTCTGTGGCCACCAACCC
Found at i:139993 original size:19 final size:19
Alignment explanation
Indices: 139969--140005 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
139959 CTCTTCCCAT
139969 CTCTAGTCCTACCCATCTA
1 CTCTAGTCCTACCCATCTA
139988 CTCTAGTCCTACCCATCT
1 CTCTAGTCCTACCCATCT
140006 CCACCCACCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.19, C:0.43, G:0.05, T:0.32
Consensus pattern (19 bp):
CTCTAGTCCTACCCATCTA
Left flanking sequence: Indices 139469 -- 139968
ATTTTAGAGGTGGCAGAGTCGGTGGGTGAGCTCACGAAGGAGCGGGTGGCGGAGCGATTGGCGGG
GCGGAGGCGTGAGGCCGTGGTGGTGGCCGCTGCCGCAGCCGAGACGACGTGAGGGCTTATTACTA
AGGTCGATATATTATCACCGCCCTTGGTATTACGAGGTATCCGTTGCGTTGACCCTAACCAGGCA
CTATCAACAATACCATCAAGATTGGTTAATAATCTTACAAAACACATTCTAAGTGGTGGTCATTT
ATGTCTTCCTTGTCCATTACCAGGCACTATCATGAATGATATGGAGTTCGCGTAGCTTTCGTACC
AGTGTAATCATTAGTAAAGACTCAACTTCATTGTTCTATAAGCTAAACCACATCTAATACCATAA
TCAGTCAAACAATACACTCAGCTCGATCTCTCCTCTTGAACCATTACCCCACAGCTTCATCTCGC
GTCTTAGTCAGCTCAGCCTACCCTAGCCAGTGTACCTCTTCCCAT
Right flanking sequence: Indices 140006 -- 140505
CCACCCACCTCCTCCACTACCACCTACCCGATCCAATCCCACCTATGACGTCAACGTCACAACAC
CACACCATCACCACCCATACCACCACCACTACCCCACTACCACAACCACCCCTCGTAATAACACT
ACTCCCACCTCTACCCCACCACCTCTACCCCAACACTACCCTACCTCCCCACTTCCTTCACTTTC
CCACACTTCTTCCCCACCGCGCGCACGAAACCGATCAAGCCATATCCATCGTCGAGGCACCCACA
CCACACACCCGCCCTCACGAGCCATGAGCAACCCCGACGAAGTAAGTGTGTCCCCTGCCAACCCA
TTGGTCCCCCGTGTTCTCCACTAACCCCAGATCCGCGCCAAGCGTTTGGCCCGACTCGGTGGCAA
CGGCCTGAGGCTGCCAGCGCTGCTGCTGGCGTCTGTGAACAGCAGTGACGGCAAACAGAAGCCTG
CGAGCCCGGCCCCCGTGGCCGCCAGCCCGTCTGTGGCCACCAACC
Found at i:140159 original size:14 final size:14
Alignment explanation
Indices: 140140--140167 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
140130 AACACTACTC
140140 CCACCTCTACCCCA
1 CCACCTCTACCCCA
140154 CCACCTCTACCCCA
1 CCACCTCTACCCCA
140168 ACACTACCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.64, G:0.00, T:0.14
Consensus pattern (14 bp):
CCACCTCTACCCCA
Left flanking sequence: Indices 139640 -- 140139
CGTTGCGTTGACCCTAACCAGGCACTATCAACAATACCATCAAGATTGGTTAATAATCTTACAAA
ACACATTCTAAGTGGTGGTCATTTATGTCTTCCTTGTCCATTACCAGGCACTATCATGAATGATA
TGGAGTTCGCGTAGCTTTCGTACCAGTGTAATCATTAGTAAAGACTCAACTTCATTGTTCTATAA
GCTAAACCACATCTAATACCATAATCAGTCAAACAATACACTCAGCTCGATCTCTCCTCTTGAAC
CATTACCCCACAGCTTCATCTCGCGTCTTAGTCAGCTCAGCCTACCCTAGCCAGTGTACCTCTTC
CCATCTCTAGTCCTACCCATCTACTCTAGTCCTACCCATCTCCACCCACCTCCTCCACTACCACC
TACCCGATCCAATCCCACCTATGACGTCAACGTCACAACACCACACCATCACCACCCATACCACC
ACCACTACCCCACTACCACAACCACCCCTCGTAATAACACTACTC
Right flanking sequence: Indices 140168 -- 140667
ACACTACCCTACCTCCCCACTTCCTTCACTTTCCCACACTTCTTCCCCACCGCGCGCACGAAACC
GATCAAGCCATATCCATCGTCGAGGCACCCACACCACACACCCGCCCTCACGAGCCATGAGCAAC
CCCGACGAAGTAAGTGTGTCCCCTGCCAACCCATTGGTCCCCCGTGTTCTCCACTAACCCCAGAT
CCGCGCCAAGCGTTTGGCCCGACTCGGTGGCAACGGCCTGAGGCTGCCAGCGCTGCTGCTGGCGT
CTGTGAACAGCAGTGACGGCAAACAGAAGCCTGCGAGCCCGGCCCCCGTGGCCGCCAGCCCGTCT
GTGGCCACCAACCCGCCGTCCGCGGCGCCCACGGCCCAGCCGCCATCGCTGAACCAGACCCAGCC
TCCCGTCCGGCTGGAGGCCCACCAGGCCCCACCGGAGGCCCACCAAGCCCAGCCCGCCGCTACCA
AACCCGCTCCGGCCAAGCCCAGACCGCTGCTCTCGCTCTCCGAGT
Found at i:143995 original size:24 final size:25
Alignment explanation
Indices: 143962--144018 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
143952 CACATATCAA
* * *
143962 CTCTCAAAACCAACAC-CTTCACAT
1 CTCTCCAAACCAACACTCTTAACAG
*
143986 CTCTCCAAACCATCACTCTTAACAG
1 CTCTCCAAACCAACACTCTTAACAG
144011 CTCTCCAA
1 CTCTCCAA
144019 GTCAACCCCT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
24 14 0.50
25 14 0.50
ACGTcount: A:0.33, C:0.42, G:0.02, T:0.23
Consensus pattern (25 bp):
CTCTCCAAACCAACACTCTTAACAG
Left flanking sequence: Indices 143462 -- 143961
GGACGACGAGTTGAAGGCCAAGATCGAGGCGTTCAAGCAGCTGAAGCGGGCCGCGCGGGAGTAGA
GAAGAGTGTAGAGTGAATGGTAGAATGAATGAGAGGTAATGGTAGAGAAGGTAGTCAGGAGTCAT
GGAACAGGTGGGTGATAGGAGACATGGTTGAATTTTCCATGTTGACTGGTGATATAGAGAAGCTG
TAGTCAGTCTGACGCATGGAAGCCTAGGTGACAGGTGCCCAGAAGCTCGTTAGTGTGGTCTATAG
TATGCTCAGGGTATTAGTCCTTTCTTTCAAACCAACGGGGTGGTAACATTTCAGAGCACAATGAA
GGAATGCCAGTTAAACTTTTGAAAGAGTATTCTATAAATTGAACGTGGATTATTGTGTAGTTTTG
CAATTTTTGTCCGAAAGTGGAGATAATCGAAATACAATCATAGAAGTAAACCGCATTTCACAGGA
GCCTCATCACAATCGACCCAACGAACTCACCCCAACACATATCAA
Right flanking sequence: Indices 144019 -- 144518
GTCAACCCCTTCTGACAACATCTCAACCACCACACACACCTACACATATCCCTCTACTCATCGTA
TTACCTTTGTTTCTATTACATATACATCAACCGCACATCAATTAAACCCGCAAAACTTAAGCCTT
GATGGCGTACTTTCTCTGGGGGAAAGCAACAGACTTCTTCTTGGACTTCTCGGTCTTGATGGCCA
ACTCCTCCTTGGTCAAGGCTCTGCGCAAAGCTCTGGTCTTCTTGGCACGCAAGTCCTTGGGGATG
TACTTCTTGTCAGCGTAGAAAGCGCGGACAGTCTGTCTCTGGTTGTAGTTGATGACAGTCAACAC
TCTGGCAATGTTCTTTCTGACAATGTTGATTCTGGGCAAAGAAGCCTTCTGCAACTTCTGCACCT
TCAACTGAGCCAACTCCTGCTTGAGCTCAACGAGCTGCTCCTCCAACTGCTCCTTAGACTTGGTC
TTCAATTCGTAAGCTTTGATAGCGGCCTAGTAGGTTAGTACGTGC
Found at i:146828 original size:36 final size:36
Alignment explanation
Indices: 146783--146854 Score: 99
Period size: 36 Copynumber: 2.0 Consensus size: 36
146773 ATCTGACTGA
* *
146783 TGCTTGCAACAGACCTCCTAAACCGGAATTGATTCT
1 TGCTTGCAACACAACTCCTAAACCGGAATTGATTCT
* * *
146819 TGCTTGCAACACAACTCTTAAACCGGATTTTATTCT
1 TGCTTGCAACACAACTCCTAAACCGGAATTGATTCT
146855 ACGAATCGTG
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (36 bp):
TGCTTGCAACACAACTCCTAAACCGGAATTGATTCT
Left flanking sequence: Indices 146283 -- 146782
CGCGTATCCCGTGGCGGCGGGGGATTGTTCTGGGGGATCAATGGCGGTGGTGGTGTAGCGTAGGG
TGTTCTTCGGGCGTTAACTCCGGCGGGCGTGGCTGCGAAATGTGTCATCCGCATCGGGCGAGGGA
GAACAGCCCAGAGATGAAGCTCGCCACGGAGTTAGTGCGAGTGGAGACGAGGATGTGAGGCGGGC
TAAGCCAGGGCCTTTTTTTAGAAACCAGTGTAGTGGGGTGTGATGAGGTTGTGATGGAGGCTCGG
TTCGGGGTGTGGAGTGTGGTAGACGGTGGTGTGTGTACGGTAGAGTGTGGGTGGACTCGCTGCAC
CCAGCAGACACCGACAGCCGCCTTATGGCTGATGCCTGCTGCAGGTTGCACCCATTATCTTCACG
ATCACTTCACCGAGACAATCAGACCATAATGGGAATTGCGATGAGCCTGGATTGTAAGGGATTGG
TTGTAAGGGTGAGGGTGTAATCCAGACAATTGTCCATCTGACTGA
Right flanking sequence: Indices 146855 -- 147354
ACGAATCGTGTACACTATTCGCAAAGGGTTATAGTTATGCGTACTACAATTAAACACACATAAAC
AGACCTATTTTAAAAGACCTATTTTAGAAGACTTCAAAAAACTCACCTACATTAGGAAACAGATC
CACAAACATTGAATCGATCACAGCGCATTACCACACTAACCAACAATGCAAAAAGCTTACGGTAA
TAATCCAGCTTACGATATACGACTCTGATCAGATACACTCACAATGTCAAACAAGCACAGTATCA
TGTAAAGTGTAATTAACAACACTGTAATTAAATCACTCTGTGTCTAACCATAAATGCCCTAGTGT
AATCACTGATAATCAGCAAACCACACCGAAACACCATAATCTCCTGGACACCAACCCACCACCCC
ACCCCACTATATCCTTAACACATGAATATGCTATATGCTACTTGCCTACGTTCACCTTGCACGAG
GCAAACTTGCGGAGCGCCCGCAAAAACACCGCGTACGACATCTCC
Found at i:146939 original size:14 final size:14
Alignment explanation
Indices: 146915--146951 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
146905 TAAACACACA
146915 TAAACAGACCTATTT
1 TAAA-AGACCTATTT
146930 TAAAAGACCTATTT
1 TAAAAGACCTATTT
*
146944 TAGAAGAC
1 TAAAAGAC
146952 TTCAAAAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 17 0.81
15 4 0.19
ACGTcount: A:0.43, C:0.16, G:0.11, T:0.30
Consensus pattern (14 bp):
TAAAAGACCTATTT
Left flanking sequence: Indices 146415 -- 146914
ACAGCCCAGAGATGAAGCTCGCCACGGAGTTAGTGCGAGTGGAGACGAGGATGTGAGGCGGGCTA
AGCCAGGGCCTTTTTTTAGAAACCAGTGTAGTGGGGTGTGATGAGGTTGTGATGGAGGCTCGGTT
CGGGGTGTGGAGTGTGGTAGACGGTGGTGTGTGTACGGTAGAGTGTGGGTGGACTCGCTGCACCC
AGCAGACACCGACAGCCGCCTTATGGCTGATGCCTGCTGCAGGTTGCACCCATTATCTTCACGAT
CACTTCACCGAGACAATCAGACCATAATGGGAATTGCGATGAGCCTGGATTGTAAGGGATTGGTT
GTAAGGGTGAGGGTGTAATCCAGACAATTGTCCATCTGACTGATGCTTGCAACAGACCTCCTAAA
CCGGAATTGATTCTTGCTTGCAACACAACTCTTAAACCGGATTTTATTCTACGAATCGTGTACAC
TATTCGCAAAGGGTTATAGTTATGCGTACTACAATTAAACACACA
Right flanking sequence: Indices 146952 -- 147451
TTCAAAAAACTCACCTACATTAGGAAACAGATCCACAAACATTGAATCGATCACAGCGCATTACC
ACACTAACCAACAATGCAAAAAGCTTACGGTAATAATCCAGCTTACGATATACGACTCTGATCAG
ATACACTCACAATGTCAAACAAGCACAGTATCATGTAAAGTGTAATTAACAACACTGTAATTAAA
TCACTCTGTGTCTAACCATAAATGCCCTAGTGTAATCACTGATAATCAGCAAACCACACCGAAAC
ACCATAATCTCCTGGACACCAACCCACCACCCCACCCCACTATATCCTTAACACATGAATATGCT
ATATGCTACTTGCCTACGTTCACCTTGCACGAGGCAAACTTGCGGAGCGCCCGCAAAAACACCGC
GTACGACATCTCCTTGTTGTCGGGCTCCCAGTAGATCTCCGAGAGCCGGATGTGCCACGGCGGGT
AGTCCTGCAAGTCCAAGTTGGGCCCAAAGCTGATCAACAAGTCGG
Found at i:148769 original size:12 final size:12
Alignment explanation
Indices: 148752--148787 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
148742 TGGTGGTAGA
148752 GGGAAATAGAGG
1 GGGAAATAGAGG
148764 GGGAAATAGA-G
1 GGGAAATAGAGG
*
148775 GGGAAATAAAGG
1 GGGAAATAGAGG
148787 G
1 G
148788 AAGGGGGGTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.45
12 12 0.55
ACGTcount: A:0.44, C:0.00, G:0.47, T:0.08
Consensus pattern (12 bp):
GGGAAATAGAGG
Left flanking sequence: Indices 148252 -- 148751
CCGTTGCCCGTGGCGCTGTGGATCGAGCGGGTGTCCTCGGCAGCCACACCCGTTTCCACCCGCCC
GCTGGGCTCAAAAGCCTCCACGGGCTTGCGCGCGATAACGGTGTCGGACCCGAGGTCGACCCCCA
GCGCCAACGCGAGGTCGTCGCCAGCGAGCGAGGCCGCCAGGTGGAGGGTCGAGGGAGAGGTGTTC
TGCAGGCTGAGGCTGTCGCCAGCACCGCTGCGGTCGCCTTCGGAGTACGGAGACGACGGCTTGGA
CATGGTGAGGTGGAGGGCCGGTGATAATTTCGGGCGCGCAAGTGAATGTGACACGAAGCCGAGGC
AGCGAGATGGGCAGAAAAAGGGAGAAAAGCTGGTGGGGCGCTGTGGATGGGCGGGGGGGACGTGG
TTTGTGTTCTCGCTTGCGGTGGGTTTGTGGTTGCGGTGGGGTGTTCGATGCAGGGGCCTGTGATC
GGGCCATCAGGTGATGGTGGGCAGGTATAGGGTGATGGTGGTAGA
Right flanking sequence: Indices 148788 -- 149287
AAGGGGGGTATATGTGTGTAGTGGTGGGTTCTGGTGGTTCTGGCTGTGTGGTGGTTTGTTCTTCT
GTGCTCTCATTTGTTCTTCTACCGTGTTTGTGCTCTTCCCTTGCCACCTCTTACCCGTTTTGGTG
GCCACTATCACAGGGTCTGATGCACTAATGCCAGGAGCAGCCCAGCGCGCAGACAGAACTGGGCC
GCTGTCCGCCGCCATCCAGGCCACTAGAGGAGTTCCCACTAGAGGTCCCCACTAGAGGTCCCCTT
CCAGGTCTTACTTACCACTATACCTTTCTACCTCCACTATTCTCTAATCCTCGCACAATAGCCTA
ATCTTATTGTTGCAGCCAGATGTGGAGAATATGTGCGTAATTTAGCCATGCGCGGGCCAGCCCGC
CAGACACACCACGCCACCAGAAACCCCCGGGAAACCGCTCGGCCAGCCCCACCCCCCCTCGCCAA
CCCCTCCCCTGGCGGCCCGGCTGTTTTTAGCAACACCTTTCTTTT
Found at i:148779 original size:11 final size:11
Alignment explanation
Indices: 148748--148787 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
148738 GTGATGGTGG
148748 TAGA-GGGAAA
1 TAGAGGGGAAA
148758 TAGAGGGGGAAA
1 TAGA-GGGGAAA
148770 TAGAGGGGAAA
1 TAGAGGGGAAA
*
148781 TAAAGGG
1 TAGAGGG
148788 AAGGGGGGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
10 4 0.15
11 13 0.48
12 10 0.37
ACGTcount: A:0.45, C:0.00, G:0.45, T:0.10
Consensus pattern (11 bp):
TAGAGGGGAAA
Left flanking sequence: Indices 148248 -- 148747
GGTCCCGTTGCCCGTGGCGCTGTGGATCGAGCGGGTGTCCTCGGCAGCCACACCCGTTTCCACCC
GCCCGCTGGGCTCAAAAGCCTCCACGGGCTTGCGCGCGATAACGGTGTCGGACCCGAGGTCGACC
CCCAGCGCCAACGCGAGGTCGTCGCCAGCGAGCGAGGCCGCCAGGTGGAGGGTCGAGGGAGAGGT
GTTCTGCAGGCTGAGGCTGTCGCCAGCACCGCTGCGGTCGCCTTCGGAGTACGGAGACGACGGCT
TGGACATGGTGAGGTGGAGGGCCGGTGATAATTTCGGGCGCGCAAGTGAATGTGACACGAAGCCG
AGGCAGCGAGATGGGCAGAAAAAGGGAGAAAAGCTGGTGGGGCGCTGTGGATGGGCGGGGGGGAC
GTGGTTTGTGTTCTCGCTTGCGGTGGGTTTGTGGTTGCGGTGGGGTGTTCGATGCAGGGGCCTGT
GATCGGGCCATCAGGTGATGGTGGGCAGGTATAGGGTGATGGTGG
Right flanking sequence: Indices 148788 -- 149287
AAGGGGGGTATATGTGTGTAGTGGTGGGTTCTGGTGGTTCTGGCTGTGTGGTGGTTTGTTCTTCT
GTGCTCTCATTTGTTCTTCTACCGTGTTTGTGCTCTTCCCTTGCCACCTCTTACCCGTTTTGGTG
GCCACTATCACAGGGTCTGATGCACTAATGCCAGGAGCAGCCCAGCGCGCAGACAGAACTGGGCC
GCTGTCCGCCGCCATCCAGGCCACTAGAGGAGTTCCCACTAGAGGTCCCCACTAGAGGTCCCCTT
CCAGGTCTTACTTACCACTATACCTTTCTACCTCCACTATTCTCTAATCCTCGCACAATAGCCTA
ATCTTATTGTTGCAGCCAGATGTGGAGAATATGTGCGTAATTTAGCCATGCGCGGGCCAGCCCGC
CAGACACACCACGCCACCAGAAACCCCCGGGAAACCGCTCGGCCAGCCCCACCCCCCCTCGCCAA
CCCCTCCCCTGGCGGCCCGGCTGTTTTTAGCAACACCTTTCTTTT
Found at i:149035 original size:13 final size:13
Alignment explanation
Indices: 149003--149045 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
148993 GCCATCCAGG
*
149003 CCACTAGAGGAGTTC
1 CCACTAGA-G-GTCC
149018 CCACTAGAGGTCC
1 CCACTAGAGGTCC
149031 CCACTAGAGGTCC
1 CCACTAGAGGTCC
149044 CC
1 CC
149046 TTCCAGGTCT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
13 18 0.67
14 1 0.04
15 8 0.30
ACGTcount: A:0.23, C:0.37, G:0.23, T:0.16
Consensus pattern (13 bp):
CCACTAGAGGTCC
Left flanking sequence: Indices 148503 -- 149002
CGGCTTGGACATGGTGAGGTGGAGGGCCGGTGATAATTTCGGGCGCGCAAGTGAATGTGACACGA
AGCCGAGGCAGCGAGATGGGCAGAAAAAGGGAGAAAAGCTGGTGGGGCGCTGTGGATGGGCGGGG
GGGACGTGGTTTGTGTTCTCGCTTGCGGTGGGTTTGTGGTTGCGGTGGGGTGTTCGATGCAGGGG
CCTGTGATCGGGCCATCAGGTGATGGTGGGCAGGTATAGGGTGATGGTGGTAGAGGGAAATAGAG
GGGGAAATAGAGGGGAAATAAAGGGAAGGGGGGTATATGTGTGTAGTGGTGGGTTCTGGTGGTTC
TGGCTGTGTGGTGGTTTGTTCTTCTGTGCTCTCATTTGTTCTTCTACCGTGTTTGTGCTCTTCCC
TTGCCACCTCTTACCCGTTTTGGTGGCCACTATCACAGGGTCTGATGCACTAATGCCAGGAGCAG
CCCAGCGCGCAGACAGAACTGGGCCGCTGTCCGCCGCCATCCAGG
Right flanking sequence: Indices 149046 -- 149545
TTCCAGGTCTTACTTACCACTATACCTTTCTACCTCCACTATTCTCTAATCCTCGCACAATAGCC
TAATCTTATTGTTGCAGCCAGATGTGGAGAATATGTGCGTAATTTAGCCATGCGCGGGCCAGCCC
GCCAGACACACCACGCCACCAGAAACCCCCGGGAAACCGCTCGGCCAGCCCCACCCCCCCTCGCC
AACCCCTCCCCTGGCGGCCCGGCTGTTTTTAGCAACACCTTTCTTTTTCCGCCGTTCCAGGCGTG
CTTAGCCCCCTCGTACATTTTTTCGAGACCATGACTAATCTTGGCACAGCAAGGTGGCACGCCAC
CCAAAACACCCGAAAACAACACCGTAGCACCCGTACCGCCGTAGAAACACCGCCCTCTGCCCCGC
CCGCCCTCGTACTTTCTTTCTTTTCCCCTCGCCAAACGCACGGCCGAACCGCATTATCGCACCAA
ATCAACCAACTACGGGGGAAAAAACCCGATCACTGGGGTATGATA
Found at i:151454 original size:15 final size:16
Alignment explanation
Indices: 151436--151516 Score: 101
Period size: 16 Copynumber: 5.1 Consensus size: 16
151426 CGAGGAGGGT
* *
151436 GGGAAGAGCT-AGCGC
1 GGGAAGAGCTGAACGA
*
151451 GGGAGGAGCTGAACGA
1 GGGAAGAGCTGAACGA
*
151467 GGGAAGAGCTGAATGA
1 GGGAAGAGCTGAACGA
*
151483 GGGAAGAGCTGAATGA
1 GGGAAGAGCTGAACGA
*
151499 GGGAAGAGCTGAATGA
1 GGGAAGAGCTGAACGA
151515 GG
1 GG
151517 TAGTTTGAAC
Statistics
Matches: 60, Mismatches: 5, Indels: 1
0.91 0.08 0.02
Matches are distributed among these distances:
15 9 0.15
16 51 0.85
ACGTcount: A:0.33, C:0.10, G:0.47, T:0.10
Consensus pattern (16 bp):
GGGAAGAGCTGAACGA
Left flanking sequence: Indices 150936 -- 151435
TGATTGGCACGGTGTTTGTGTACTTTGTCGTGTACGAGACCAAGGGCCTCAAGCTCGAGGAGGTG
GACTACATGTACCTCACGTGTCCCAACGCCCGGGCGCTGACGTCGTTCAAGTCGCGCAAGATCGA
CTACGACAACTACGACAACTTGGACATGGTGGTGATCTACGACCACCCGCAGCCGGCGCTGGCGC
TGCTGCTGGAGCCCCACCTGAAGCCCGCGTTCCCGTTCCACGACCTGCTGGTGGACGGCGAGCTG
ACGAGCTGTTCGCGCCGGCGGTCGCACCTGCTGGTGCAGGAGCTGAGGGAGCTGACGCGGGCGCT
GCGGCCGCTGGCGCCGGCGCGGAGCTCGACGTACGAGGTGTTGCCCGAGTACGGCACCCCCACCG
AGTTGTGTGCGCCGGTGGCCACCGACCAGTTTGTGCCAACGATCTGTCCGTTGGCGCTGCCGCCG
CTGGACCTGCTGTCGGAGAGCGACGATAGTGGGGACGAGGAGGGT
Right flanking sequence: Indices 151517 -- 152016
TAGTTTGAACTGATGGGGACTGGTTTGAGTAACCGGAGGTTTGGAGGTCACAGGTGACTGACGCT
GAGCTAGGGAGTATACCAGGTGTATACGAGATGGCTAGTGGGTAATCTGGTGGGTGGACTAGATA
GTGGCCGGTTTGGCTTGTAACTGGATTGGCGTTTCTATATTGACTAGTTTCACTATTCACTGGTT
TTATTGGTGACTGGTTTAATGGTGCCTGGTTTTATTGGTGACTGGTTTCATTGGTGACTAGTTTT
CTTGGTGAATGGTCTTATCGGTGACTGGTCTTATCGGTGACTGATTTGACAGTGACTGATTTGAC
AGGTGACAGGTTTGACAAGTAACAGTTTGACAAGTATCTGGTTTGACAAGAGCTGGTTTGACAAG
TAACTGGTGTGACAAGAACTGGTTTGTTTGCCACTGAATCGGCTGACTACTGGTTGACTATTGAC
TAGTTCTACTGGTGGTTGCCTAATCGGTTTAAGCTAGTGACTGGT
Found at i:151475 original size:16 final size:16
Alignment explanation
Indices: 151451--151516 Score: 114
Period size: 16 Copynumber: 4.1 Consensus size: 16
151441 GAGCTAGCGC
* *
151451 GGGAGGAGCTGAACGA
1 GGGAAGAGCTGAATGA
151467 GGGAAGAGCTGAATGA
1 GGGAAGAGCTGAATGA
151483 GGGAAGAGCTGAATGA
1 GGGAAGAGCTGAATGA
151499 GGGAAGAGCTGAATGA
1 GGGAAGAGCTGAATGA
151515 GG
1 GG
151517 TAGTTTGAAC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.35, C:0.08, G:0.47, T:0.11
Consensus pattern (16 bp):
GGGAAGAGCTGAATGA
Left flanking sequence: Indices 150951 -- 151450
TTGTGTACTTTGTCGTGTACGAGACCAAGGGCCTCAAGCTCGAGGAGGTGGACTACATGTACCTC
ACGTGTCCCAACGCCCGGGCGCTGACGTCGTTCAAGTCGCGCAAGATCGACTACGACAACTACGA
CAACTTGGACATGGTGGTGATCTACGACCACCCGCAGCCGGCGCTGGCGCTGCTGCTGGAGCCCC
ACCTGAAGCCCGCGTTCCCGTTCCACGACCTGCTGGTGGACGGCGAGCTGACGAGCTGTTCGCGC
CGGCGGTCGCACCTGCTGGTGCAGGAGCTGAGGGAGCTGACGCGGGCGCTGCGGCCGCTGGCGCC
GGCGCGGAGCTCGACGTACGAGGTGTTGCCCGAGTACGGCACCCCCACCGAGTTGTGTGCGCCGG
TGGCCACCGACCAGTTTGTGCCAACGATCTGTCCGTTGGCGCTGCCGCCGCTGGACCTGCTGTCG
GAGAGCGACGATAGTGGGGACGAGGAGGGTGGGAAGAGCTAGCGC
Right flanking sequence: Indices 151517 -- 152016
TAGTTTGAACTGATGGGGACTGGTTTGAGTAACCGGAGGTTTGGAGGTCACAGGTGACTGACGCT
GAGCTAGGGAGTATACCAGGTGTATACGAGATGGCTAGTGGGTAATCTGGTGGGTGGACTAGATA
GTGGCCGGTTTGGCTTGTAACTGGATTGGCGTTTCTATATTGACTAGTTTCACTATTCACTGGTT
TTATTGGTGACTGGTTTAATGGTGCCTGGTTTTATTGGTGACTGGTTTCATTGGTGACTAGTTTT
CTTGGTGAATGGTCTTATCGGTGACTGGTCTTATCGGTGACTGATTTGACAGTGACTGATTTGAC
AGGTGACAGGTTTGACAAGTAACAGTTTGACAAGTATCTGGTTTGACAAGAGCTGGTTTGACAAG
TAACTGGTGTGACAAGAACTGGTTTGTTTGCCACTGAATCGGCTGACTACTGGTTGACTATTGAC
TAGTTCTACTGGTGGTTGCCTAATCGGTTTAAGCTAGTGACTGGT
Found at i:151724 original size:16 final size:16
Alignment explanation
Indices: 151705--151819 Score: 133
Period size: 16 Copynumber: 7.2 Consensus size: 16
151695 TTCACTATTC
151705 ACTGGTTTTATTGGTG
1 ACTGGTTTTATTGGTG
*
151721 ACTGG-TTTAATGGTG
1 ACTGGTTTTATTGGTG
*
151736 CCTGGTTTTATTGGTG
1 ACTGGTTTTATTGGTG
*
151752 ACTGGTTTCATTGGTG
1 ACTGGTTTTATTGGTG
* *
151768 ACTAGTTTTCTTGGTG
1 ACTGGTTTTATTGGTG
* * *
151784 AATGGTCTTATCGGTG
1 ACTGGTTTTATTGGTG
* *
151800 ACTGGTCTTATCGGTG
1 ACTGGTTTTATTGGTG
151816 ACTG
1 ACTG
151820 ATTTGACAGT
Statistics
Matches: 84, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
15 13 0.15
16 71 0.85
ACGTcount: A:0.14, C:0.12, G:0.30, T:0.43
Consensus pattern (16 bp):
ACTGGTTTTATTGGTG
Left flanking sequence: Indices 151205 -- 151704
TCGCGCCGGCGGTCGCACCTGCTGGTGCAGGAGCTGAGGGAGCTGACGCGGGCGCTGCGGCCGCT
GGCGCCGGCGCGGAGCTCGACGTACGAGGTGTTGCCCGAGTACGGCACCCCCACCGAGTTGTGTG
CGCCGGTGGCCACCGACCAGTTTGTGCCAACGATCTGTCCGTTGGCGCTGCCGCCGCTGGACCTG
CTGTCGGAGAGCGACGATAGTGGGGACGAGGAGGGTGGGAAGAGCTAGCGCGGGAGGAGCTGAAC
GAGGGAAGAGCTGAATGAGGGAAGAGCTGAATGAGGGAAGAGCTGAATGAGGTAGTTTGAACTGA
TGGGGACTGGTTTGAGTAACCGGAGGTTTGGAGGTCACAGGTGACTGACGCTGAGCTAGGGAGTA
TACCAGGTGTATACGAGATGGCTAGTGGGTAATCTGGTGGGTGGACTAGATAGTGGCCGGTTTGG
CTTGTAACTGGATTGGCGTTTCTATATTGACTAGTTTCACTATTC
Right flanking sequence: Indices 151820 -- 152319
ATTTGACAGTGACTGATTTGACAGGTGACAGGTTTGACAAGTAACAGTTTGACAAGTATCTGGTT
TGACAAGAGCTGGTTTGACAAGTAACTGGTGTGACAAGAACTGGTTTGTTTGCCACTGAATCGGC
TGACTACTGGTTGACTATTGACTAGTTCTACTGGTGGTTGCCTAATCGGTTTAAGCTAGTGACTG
GTGGTGATATGGTTAGACCAGACTGGACCACTGGCAGGTCAGATCAATTGTGACCGGTTAGACTA
GTTACTGAAATCAGCGATCTGTTGACTGTGACCTATCCCAGTGATTGGTCACTCGATCGGGTTAG
ACTAGTGTTTGGTTGACCAGATCTGCCTAGGCTAGTGATTGGTTAGCCAGATCTAGTGGCGCTGG
TGAATTGCTTACCGTCACTTGTTGGCTGGTTGCACAAGACAGTCTTTTGAATTGGCTTGGTTGTA
CTATGAACTGGTTTCTGGTACTGACGGGCTATTCCGATTGGTCAC
Found at i:151833 original size:15 final size:16
Alignment explanation
Indices: 151812--151858 Score: 69
Period size: 15 Copynumber: 3.0 Consensus size: 16
151802 TGGTCTTATC
151812 GGTGACTGATTTGACA
1 GGTGACTGATTTGACA
151828 -GTGACTGATTTGACA
1 GGTGACTGATTTGACA
* *
151843 GGTGACAGGTTTGACA
1 GGTGACTGATTTGACA
151859 AGTAACAGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
15 15 0.54
16 13 0.46
ACGTcount: A:0.26, C:0.13, G:0.32, T:0.30
Consensus pattern (16 bp):
GGTGACTGATTTGACA
Left flanking sequence: Indices 151312 -- 151811
CGGCACCCCCACCGAGTTGTGTGCGCCGGTGGCCACCGACCAGTTTGTGCCAACGATCTGTCCGT
TGGCGCTGCCGCCGCTGGACCTGCTGTCGGAGAGCGACGATAGTGGGGACGAGGAGGGTGGGAAG
AGCTAGCGCGGGAGGAGCTGAACGAGGGAAGAGCTGAATGAGGGAAGAGCTGAATGAGGGAAGAG
CTGAATGAGGTAGTTTGAACTGATGGGGACTGGTTTGAGTAACCGGAGGTTTGGAGGTCACAGGT
GACTGACGCTGAGCTAGGGAGTATACCAGGTGTATACGAGATGGCTAGTGGGTAATCTGGTGGGT
GGACTAGATAGTGGCCGGTTTGGCTTGTAACTGGATTGGCGTTTCTATATTGACTAGTTTCACTA
TTCACTGGTTTTATTGGTGACTGGTTTAATGGTGCCTGGTTTTATTGGTGACTGGTTTCATTGGT
GACTAGTTTTCTTGGTGAATGGTCTTATCGGTGACTGGTCTTATC
Right flanking sequence: Indices 151859 -- 152358
AGTAACAGTTTGACAAGTATCTGGTTTGACAAGAGCTGGTTTGACAAGTAACTGGTGTGACAAGA
ACTGGTTTGTTTGCCACTGAATCGGCTGACTACTGGTTGACTATTGACTAGTTCTACTGGTGGTT
GCCTAATCGGTTTAAGCTAGTGACTGGTGGTGATATGGTTAGACCAGACTGGACCACTGGCAGGT
CAGATCAATTGTGACCGGTTAGACTAGTTACTGAAATCAGCGATCTGTTGACTGTGACCTATCCC
AGTGATTGGTCACTCGATCGGGTTAGACTAGTGTTTGGTTGACCAGATCTGCCTAGGCTAGTGAT
TGGTTAGCCAGATCTAGTGGCGCTGGTGAATTGCTTACCGTCACTTGTTGGCTGGTTGCACAAGA
CAGTCTTTTGAATTGGCTTGGTTGTACTATGAACTGGTTTCTGGTACTGACGGGCTATTCCGATT
GGTCACTAATAACCAGTTACTACTGACAGACTACTGACCGGTAGA
Found at i:151855 original size:16 final size:15
Alignment explanation
Indices: 151821--151873 Score: 54
Period size: 16 Copynumber: 3.5 Consensus size: 15
151811 CGGTGACTGA
* *
151821 TTTGACAGTGACTGA
1 TTTGACAGTGACAGG
151836 TTTGACAGGTGACAGG
1 TTTGACA-GTGACAGG
*
151852 TTTGACAAGTAACA-G
1 TTTGAC-AGTGACAGG
151867 TTTGACA
1 TTTGACA
151874 AGTATCTGGT
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
14 1 0.03
15 14 0.42
16 17 0.52
17 1 0.03
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.30
Consensus pattern (15 bp):
TTTGACAGTGACAGG
Left flanking sequence: Indices 151321 -- 151820
CACCGAGTTGTGTGCGCCGGTGGCCACCGACCAGTTTGTGCCAACGATCTGTCCGTTGGCGCTGC
CGCCGCTGGACCTGCTGTCGGAGAGCGACGATAGTGGGGACGAGGAGGGTGGGAAGAGCTAGCGC
GGGAGGAGCTGAACGAGGGAAGAGCTGAATGAGGGAAGAGCTGAATGAGGGAAGAGCTGAATGAG
GTAGTTTGAACTGATGGGGACTGGTTTGAGTAACCGGAGGTTTGGAGGTCACAGGTGACTGACGC
TGAGCTAGGGAGTATACCAGGTGTATACGAGATGGCTAGTGGGTAATCTGGTGGGTGGACTAGAT
AGTGGCCGGTTTGGCTTGTAACTGGATTGGCGTTTCTATATTGACTAGTTTCACTATTCACTGGT
TTTATTGGTGACTGGTTTAATGGTGCCTGGTTTTATTGGTGACTGGTTTCATTGGTGACTAGTTT
TCTTGGTGAATGGTCTTATCGGTGACTGGTCTTATCGGTGACTGA
Right flanking sequence: Indices 151874 -- 152373
AGTATCTGGTTTGACAAGAGCTGGTTTGACAAGTAACTGGTGTGACAAGAACTGGTTTGTTTGCC
ACTGAATCGGCTGACTACTGGTTGACTATTGACTAGTTCTACTGGTGGTTGCCTAATCGGTTTAA
GCTAGTGACTGGTGGTGATATGGTTAGACCAGACTGGACCACTGGCAGGTCAGATCAATTGTGAC
CGGTTAGACTAGTTACTGAAATCAGCGATCTGTTGACTGTGACCTATCCCAGTGATTGGTCACTC
GATCGGGTTAGACTAGTGTTTGGTTGACCAGATCTGCCTAGGCTAGTGATTGGTTAGCCAGATCT
AGTGGCGCTGGTGAATTGCTTACCGTCACTTGTTGGCTGGTTGCACAAGACAGTCTTTTGAATTG
GCTTGGTTGTACTATGAACTGGTTTCTGGTACTGACGGGCTATTCCGATTGGTCACTAATAACCA
GTTACTACTGACAGACTACTGACCGGTAGACTATTTACCAGTTGA
Found at i:151871 original size:15 final size:16
Alignment explanation
Indices: 151851--151932 Score: 80
Period size: 15 Copynumber: 5.3 Consensus size: 16
151841 CAGGTGACAG
151851 GTTTGACAAGTAAC-A
1 GTTTGACAAGTAACTA
* *
151866 GTTTGACAAGTATCTG
1 GTTTGACAAGTAACTA
* *
151882 GTTTGACAAG-AGCTG
1 GTTTGACAAGTAACTA
*
151897 GTTTGACAAGTAACTG
1 GTTTGACAAGTAACTA
* *
151913 GTGTGACAAG-AACTG
1 GTTTGACAAGTAACTA
151928 GTTTG
1 GTTTG
151933 TTTGCCACTG
Statistics
Matches: 59, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
15 36 0.61
16 23 0.39
ACGTcount: A:0.29, C:0.12, G:0.28, T:0.30
Consensus pattern (16 bp):
GTTTGACAAGTAACTA
Left flanking sequence: Indices 151351 -- 151850
CCAGTTTGTGCCAACGATCTGTCCGTTGGCGCTGCCGCCGCTGGACCTGCTGTCGGAGAGCGACG
ATAGTGGGGACGAGGAGGGTGGGAAGAGCTAGCGCGGGAGGAGCTGAACGAGGGAAGAGCTGAAT
GAGGGAAGAGCTGAATGAGGGAAGAGCTGAATGAGGTAGTTTGAACTGATGGGGACTGGTTTGAG
TAACCGGAGGTTTGGAGGTCACAGGTGACTGACGCTGAGCTAGGGAGTATACCAGGTGTATACGA
GATGGCTAGTGGGTAATCTGGTGGGTGGACTAGATAGTGGCCGGTTTGGCTTGTAACTGGATTGG
CGTTTCTATATTGACTAGTTTCACTATTCACTGGTTTTATTGGTGACTGGTTTAATGGTGCCTGG
TTTTATTGGTGACTGGTTTCATTGGTGACTAGTTTTCTTGGTGAATGGTCTTATCGGTGACTGGT
CTTATCGGTGACTGATTTGACAGTGACTGATTTGACAGGTGACAG
Right flanking sequence: Indices 151933 -- 152432
TTTGCCACTGAATCGGCTGACTACTGGTTGACTATTGACTAGTTCTACTGGTGGTTGCCTAATCG
GTTTAAGCTAGTGACTGGTGGTGATATGGTTAGACCAGACTGGACCACTGGCAGGTCAGATCAAT
TGTGACCGGTTAGACTAGTTACTGAAATCAGCGATCTGTTGACTGTGACCTATCCCAGTGATTGG
TCACTCGATCGGGTTAGACTAGTGTTTGGTTGACCAGATCTGCCTAGGCTAGTGATTGGTTAGCC
AGATCTAGTGGCGCTGGTGAATTGCTTACCGTCACTTGTTGGCTGGTTGCACAAGACAGTCTTTT
GAATTGGCTTGGTTGTACTATGAACTGGTTTCTGGTACTGACGGGCTATTCCGATTGGTCACTAA
TAACCAGTTACTACTGACAGACTACTGACCGGTAGACTATTTACCAGTTGAGACTACTGATTACC
AACCAAGTAAGGCTACTGTCCAGGTTGACTACCAAACAGGTTCGA
Found at i:151901 original size:31 final size:31
Alignment explanation
Indices: 151831--151932 Score: 107
Period size: 31 Copynumber: 3.3 Consensus size: 31
151821 TTTGACAGTG
* * * * *
151831 ACTGATTTGACAGGTGACAGGTTTGACAAGTA
1 ACTGGTTTGACAAGTAACTGGTGTGACAAG-A
* * *
151863 AC-AGTTTGACAAGTATCTGGTTTGACAAGA
1 ACTGGTTTGACAAGTAACTGGTGTGACAAGA
*
151893 GCTGGTTTGACAAGTAACTGGTGTGACAAGA
1 ACTGGTTTGACAAGTAACTGGTGTGACAAGA
151924 ACTGGTTTG
1 ACTGGTTTG
151933 TTTGCCACTG
Statistics
Matches: 58, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
30 2 0.03
31 54 0.93
32 2 0.03
ACGTcount: A:0.29, C:0.13, G:0.28, T:0.29
Consensus pattern (31 bp):
ACTGGTTTGACAAGTAACTGGTGTGACAAGA
Left flanking sequence: Indices 151331 -- 151830
TGTGCGCCGGTGGCCACCGACCAGTTTGTGCCAACGATCTGTCCGTTGGCGCTGCCGCCGCTGGA
CCTGCTGTCGGAGAGCGACGATAGTGGGGACGAGGAGGGTGGGAAGAGCTAGCGCGGGAGGAGCT
GAACGAGGGAAGAGCTGAATGAGGGAAGAGCTGAATGAGGGAAGAGCTGAATGAGGTAGTTTGAA
CTGATGGGGACTGGTTTGAGTAACCGGAGGTTTGGAGGTCACAGGTGACTGACGCTGAGCTAGGG
AGTATACCAGGTGTATACGAGATGGCTAGTGGGTAATCTGGTGGGTGGACTAGATAGTGGCCGGT
TTGGCTTGTAACTGGATTGGCGTTTCTATATTGACTAGTTTCACTATTCACTGGTTTTATTGGTG
ACTGGTTTAATGGTGCCTGGTTTTATTGGTGACTGGTTTCATTGGTGACTAGTTTTCTTGGTGAA
TGGTCTTATCGGTGACTGGTCTTATCGGTGACTGATTTGACAGTG
Right flanking sequence: Indices 151933 -- 152432
TTTGCCACTGAATCGGCTGACTACTGGTTGACTATTGACTAGTTCTACTGGTGGTTGCCTAATCG
GTTTAAGCTAGTGACTGGTGGTGATATGGTTAGACCAGACTGGACCACTGGCAGGTCAGATCAAT
TGTGACCGGTTAGACTAGTTACTGAAATCAGCGATCTGTTGACTGTGACCTATCCCAGTGATTGG
TCACTCGATCGGGTTAGACTAGTGTTTGGTTGACCAGATCTGCCTAGGCTAGTGATTGGTTAGCC
AGATCTAGTGGCGCTGGTGAATTGCTTACCGTCACTTGTTGGCTGGTTGCACAAGACAGTCTTTT
GAATTGGCTTGGTTGTACTATGAACTGGTTTCTGGTACTGACGGGCTATTCCGATTGGTCACTAA
TAACCAGTTACTACTGACAGACTACTGACCGGTAGACTATTTACCAGTTGAGACTACTGATTACC
AACCAAGTAAGGCTACTGTCCAGGTTGACTACCAAACAGGTTCGA
Found at i:152436 original size:17 final size:17
Alignment explanation
Indices: 152408--152486 Score: 79
Period size: 17 Copynumber: 4.7 Consensus size: 17
152398 GGCTACTGTC
152408 CAGGTT-GACTACCAAA
1 CAGGTTCGACTACCAAA
* **
152424 CAGGTTCGACTACTACC
1 CAGGTTCGACTACCAAA
* * *
152441 CAGGTTGGGCCACCAAA
1 CAGGTTCGACTACCAAA
*
152458 CAGGTTCGACTACCAAC
1 CAGGTTCGACTACCAAA
*
152475 CAGGTTAGACTA
1 CAGGTTCGACTA
152487 TTGCCAGTTA
Statistics
Matches: 48, Mismatches: 14, Indels: 1
0.76 0.22 0.02
Matches are distributed among these distances:
16 6 0.12
17 42 0.88
ACGTcount: A:0.30, C:0.29, G:0.22, T:0.19
Consensus pattern (17 bp):
CAGGTTCGACTACCAAA
Left flanking sequence: Indices 151908 -- 152407
AACTGGTGTGACAAGAACTGGTTTGTTTGCCACTGAATCGGCTGACTACTGGTTGACTATTGACT
AGTTCTACTGGTGGTTGCCTAATCGGTTTAAGCTAGTGACTGGTGGTGATATGGTTAGACCAGAC
TGGACCACTGGCAGGTCAGATCAATTGTGACCGGTTAGACTAGTTACTGAAATCAGCGATCTGTT
GACTGTGACCTATCCCAGTGATTGGTCACTCGATCGGGTTAGACTAGTGTTTGGTTGACCAGATC
TGCCTAGGCTAGTGATTGGTTAGCCAGATCTAGTGGCGCTGGTGAATTGCTTACCGTCACTTGTT
GGCTGGTTGCACAAGACAGTCTTTTGAATTGGCTTGGTTGTACTATGAACTGGTTTCTGGTACTG
ACGGGCTATTCCGATTGGTCACTAATAACCAGTTACTACTGACAGACTACTGACCGGTAGACTAT
TTACCAGTTGAGACTACTGATTACCAACCAAGTAAGGCTACTGTC
Right flanking sequence: Indices 152487 -- 152986
TTGCCAGTTAGACTATTGCCCAGGTTAGACCATTGGCTTGACTACCAACCGGTTGTTAGGTCGGT
AGCTCATCATCAATTGACTCAATCGGGCTACTCACCTGCTGTTTGTTCCCATCCCAGTCACCCAT
TCTTCCCATCCAAGTCATCTACCTTCCCACCCCACCAACCACCCTCCATTCTCACGGCCATAAGC
CATCCCAGATCAACAGAATTTCATTTCAAACACTCAACACTTGACTCCTCCCCACCCCTACGGCT
TTACGAGCCTCCATAGCCTATCTATTCGGTACCGCCTGCGGCACCATCAATATCGTCAAGTCACC
TAATCAGGCCGGGTCCTACCTATAGACACACTAGCCAAGCCGGCACCACGCCACGCCAAACCCAC
GCCACCACACGTCGCCCGTCGCCTCGTTCCTCTGCGGGACACGACTCATGACTTATGACAATAAC
GACAATAAACAATACCTGAAACACCGCTATATAAACCCCGGATCG
Done.