Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold24
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 238143
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Warning! 1 characters in sequence are not A, C, G, or T
File 1 of 2
Found at i:468 original size:16 final size:14
Alignment explanation
Indices: 436--475 Score: 55
Period size: 16 Copynumber: 2.8 Consensus size: 14
426 GTGTGGGTTA
436 GTGTAGAGTA-TTG
1 GTGTAGAGTATTTG
449 GTGTAGAGTATTGATG
1 GTGTAGAGTATT--TG
465 GTGTAGAGTAT
1 GTGTAGAGTAT
476 CGTTAGTGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
13 10 0.42
14 1 0.04
16 13 0.54
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.38
Consensus pattern (14 bp):
GTGTAGAGTATTTG
Left flanking sequence: Indices 1 -- 435
TGTGCACGACAAAGTCGGAATTTACTCAGGACAAGTCGGAAGTCAACCTGTGTCATCTGCATTTA
TTTAGTTCCGAACAAAACCGAAACGACTGTATCTCGGCTGGTTACGTGCCCGGCGGCTCGGGCCA
CCACCCGTTGGGCCTTGGGCCTTGGTCCATCGGGTCCCCGGAGGGCAGGGGTTCTAACCGGTGCC
CAGTGGGCGAGCCAGAGAATGGCTGTGGCTGGCTGCCTCGTCGGAATCCCGCCAGGCGGCGTGGG
TTAGTAGCGTGGTTTGGCGGTGGTCATGGTCGCAGGGGCCCGGGTGAGTAGGAGGCAACAGACAG
GCGAGGCGAGGCAGCCGAGGGAGGCGAGCAGGCAAGCAGGCGAGCAGGCTACGACCGAGCGAATA
AGCGACCGTTGTAGTATCATTAGTGAGTATTGTTGGTGTGGGTTA
Right flanking sequence: Indices 476 -- 975
CGTTAGTGTAGTTGATACTTTTTACTATTGGGAAGGGTATTCCAGGGCAGGGTTTAGTCTGCAAT
CACACCCTTTAATTCACCCGGTGGCGAATGGGTTTGAATTAAACTCTGGATCGGGTCCTGTCTCG
CTGTTATCGCTGGATTGACCTCTTCTCCCCGATGATGTCATCACCACCGGGACGATCCCAGTCCG
GGCGTCGGCTCACTTTGACACCGTCGTCGGCTAATCGGAACGCCAAGATCCATGCTTGGTACCGT
TCTCTCTTACTCCTTCTTTACTAAACCCCCTTCTGGCTGTCCACGCTTACTCATCGGGCGTTTTG
TGGCCATCTGGGCCCGTGCTGTGTCCCGATTGGTCGATCACCATCGGTGGGGAGGGCCCAAAAAG
AAGGCACGAAAGGCAATAAAACCGGCCACAAACGCATCAAAACCGCTCTCTACACTCACTAATCC
CTCTAAACCACCTTCTTTCACCTCTTCGTGCCTTCCCTCGCGCCA
Found at i:484 original size:16 final size:15
Alignment explanation
Indices: 432--486 Score: 51
Period size: 16 Copynumber: 3.7 Consensus size: 15
422 GTTGGTGTGG
432 GTTAGTGTAGAGTA-
1 GTTAGTGTAGAGTAT
*
446 -TTGGTGTAGAGTATT
1 GTTAGTGTAGAGTA-T
* *
461 GATGGTGTAGAGTAT
1 GTTAGTGTAGAGTAT
476 CGTTAGTGTAG
1 -GTTAGTGTAG
487 TTGATACTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
13 12 0.36
15 1 0.03
16 20 0.61
ACGTcount: A:0.24, C:0.02, G:0.36, T:0.38
Consensus pattern (15 bp):
GTTAGTGTAGAGTAT
Left flanking sequence: Indices 1 -- 431
TGTGCACGACAAAGTCGGAATTTACTCAGGACAAGTCGGAAGTCAACCTGTGTCATCTGCATTTA
TTTAGTTCCGAACAAAACCGAAACGACTGTATCTCGGCTGGTTACGTGCCCGGCGGCTCGGGCCA
CCACCCGTTGGGCCTTGGGCCTTGGTCCATCGGGTCCCCGGAGGGCAGGGGTTCTAACCGGTGCC
CAGTGGGCGAGCCAGAGAATGGCTGTGGCTGGCTGCCTCGTCGGAATCCCGCCAGGCGGCGTGGG
TTAGTAGCGTGGTTTGGCGGTGGTCATGGTCGCAGGGGCCCGGGTGAGTAGGAGGCAACAGACAG
GCGAGGCGAGGCAGCCGAGGGAGGCGAGCAGGCAAGCAGGCGAGCAGGCTACGACCGAGCGAATA
AGCGACCGTTGTAGTATCATTAGTGAGTATTGTTGGTGTGG
Right flanking sequence: Indices 487 -- 986
TTGATACTTTTTACTATTGGGAAGGGTATTCCAGGGCAGGGTTTAGTCTGCAATCACACCCTTTA
ATTCACCCGGTGGCGAATGGGTTTGAATTAAACTCTGGATCGGGTCCTGTCTCGCTGTTATCGCT
GGATTGACCTCTTCTCCCCGATGATGTCATCACCACCGGGACGATCCCAGTCCGGGCGTCGGCTC
ACTTTGACACCGTCGTCGGCTAATCGGAACGCCAAGATCCATGCTTGGTACCGTTCTCTCTTACT
CCTTCTTTACTAAACCCCCTTCTGGCTGTCCACGCTTACTCATCGGGCGTTTTGTGGCCATCTGG
GCCCGTGCTGTGTCCCGATTGGTCGATCACCATCGGTGGGGAGGGCCCAAAAAGAAGGCACGAAA
GGCAATAAAACCGGCCACAAACGCATCAAAACCGCTCTCTACACTCACTAATCCCTCTAAACCAC
CTTCTTTCACCTCTTCGTGCCTTCCCTCGCGCCACCTCGTGCCAC
Found at i:1287 original size:10 final size:10
Alignment explanation
Indices: 1254--1288 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
1244 GAGGGGGAAG
1254 AAGGGAGAGA
1 AAGGGAGAGA
*
1264 AAGAGAGAGA
1 AAGGGAGAGA
1274 AAGGGAGAGA
1 AAGGGAGAGA
1284 AAGGG
1 AAGGG
1289 GAAAGAAACT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (10 bp):
AAGGGAGAGA
Left flanking sequence: Indices 754 -- 1253
TACTAAACCCCCTTCTGGCTGTCCACGCTTACTCATCGGGCGTTTTGTGGCCATCTGGGCCCGTG
CTGTGTCCCGATTGGTCGATCACCATCGGTGGGGAGGGCCCAAAAAGAAGGCACGAAAGGCAATA
AAACCGGCCACAAACGCATCAAAACCGCTCTCTACACTCACTAATCCCTCTAAACCACCTTCTTT
CACCTCTTCGTGCCTTCCCTCGCGCCACCTCGTGCCACCGGCTCCCTGCGAATGGCTTTGTGCTC
ATCGCATCCCGATGCAACCAAAATCACAAGACACCACACAAAACGGCCCCCCAATGAAACACCGC
TTGCGACAGGGGCCCGTGACCGCCAGCCGCCTCTGGCTCATCTCGTAGCTCTGGGTTTGCCCCCC
ACCGGTCGGAAATCCGCCCGGAAGTGTCCCCCACGTAAACGCTTTTCCGGTTGCTCAACGGGCCG
TTGGAATGACGGACCAAGGGGAAGAATCGTAGGAAGAGGGGGAAG
Right flanking sequence: Indices 1289 -- 1788
GAAAGAAACTACATCCCAGCTCCTCTGGTGCCACTGTGGCTACTGCTCGCTTACCCTACCCGTCC
ACGCTCGCTCCGGTTAGCTCCGGTTCCCCACCACCTCGGTCCAGGCGAGGTGACAAAAGCAAAGG
ATGAAGGCAACAAGAAGCAAGACCAAGCAAGGTCAGAGAAGAGCATAAGAAGTTGAGTGAGAGAA
GAGCTTAACAGTAGGAGAGAGAAGAGCCTAGAGAAAGAGAAAGACTAAAAGAAGAGCTTACGAGA
AAGCAGAACTAAGTAGGTCAAGTCTAGCCACATGCTAGTGGGAAGGGCCTTGTAGTCACCACTCA
CCTATCCGCGGCCCTAACGCACCTGTGACGCTCCCCAGGTGCCCCACGGTTCCAGCGGAGTCACC
GTGCGGCCGCACTCCTGTGCACCACAGCTGCACCGCTCGTGCACTTCCCGCCCGGGGCATTTTCA
ACACATTCACTGCATCCACCGCGACGTTCCGGCCCAATCAGTGCT
Found at i:2045 original size:17 final size:17
Alignment explanation
Indices: 2023--2079 Score: 87
Period size: 17 Copynumber: 3.4 Consensus size: 17
2013 ACAGCCAATG
2023 GGAACTGGGAGTCCATA
1 GGAACTGGGAGTCCATA
2040 GGAACTGGGAGTCCATA
1 GGAACTGGGAGTCCATA
* * *
2057 GGAACTGAGTGTCCACA
1 GGAACTGGGAGTCCATA
2074 GGAACT
1 GGAACT
2080 AGGAATCCAC
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
17 37 1.00
ACGTcount: A:0.30, C:0.19, G:0.33, T:0.18
Consensus pattern (17 bp):
GGAACTGGGAGTCCATA
Left flanking sequence: Indices 1523 -- 2022
AAAGACTAAAAGAAGAGCTTACGAGAAAGCAGAACTAAGTAGGTCAAGTCTAGCCACATGCTAGT
GGGAAGGGCCTTGTAGTCACCACTCACCTATCCGCGGCCCTAACGCACCTGTGACGCTCCCCAGG
TGCCCCACGGTTCCAGCGGAGTCACCGTGCGGCCGCACTCCTGTGCACCACAGCTGCACCGCTCG
TGCACTTCCCGCCCGGGGCATTTTCAACACATTCACTGCATCCACCGCGACGTTCCGGCCCAATC
AGTGCTAACGCGTGCAGAGTCCATCGCCAGGTGCATGGGTGTAGGTGAGGGAAGGGGATGAAGGG
GTGGGAGGGTAGGGTGAAGGTGAAGACGAGAGGAAGTGGAGGTATGTAGGACCAGACTGTGCCAG
AATAAAGCCAGTAGAGCTGGGAGCCATAGAGCCAGAATGCCAGAGTAGAGCCCGAAAGCCGGAGC
CCGAATATAGCCAATAAAGCCAGTGAGCCAGATTAACAGCCAATG
Right flanking sequence: Indices 2080 -- 2579
AGGAATCCACAGAAACTATGACCATATAGCATTTCCTAAGGTAAAGCATTAGTAGGACTACACCG
ACTAGACACCCAATAGGCTGATGGCCGGAATACACCCAATAGCCCACGTCCGGAATACACCCACA
CCTACACTACTACACCCAGGCCAACCACTGCCAACCCATCACCCCAGTCACCCACGGTCACACTA
CACTCACCCCTCACACCCGCCTCGCTCTCTCCTCGCACGCTCTCTCCTCGCACGCTCTCTCCTCC
ACCCAATGTTCCCCACCCCTCTCTCCTCCACCCTCGCTCCTCCACCTACGCTCCTCACACCCGCC
CCTCCCTCGCTCTCCCCCACTACCCTACCCACGCACCACCCCCACCGCCTCCCCCACCCTGCACT
CCTCCCCGCCTCCCGCACTTATCGAGCGGCGAGCATGATCCGCTTTACCCTTGCAGACACCCACG
CCCATATTTTTTCGGCCCCAAAAAATACTCTGCACCTCCGCTGTG
Found at i:2071 original size:34 final size:34
Alignment explanation
Indices: 2023--2088 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 34
2013 ACAGCCAATG
* * * *
2023 GGAACTGGGAGTCCATAGGAACTGGGAGTCCATA
1 GGAACTGAGAGTCCACAGGAACTAGGAATCCATA
*
2057 GGAACTGAGTGTCCACAGGAACTAGGAATCCA
1 GGAACTGAGAGTCCACAGGAACTAGGAATCCA
2089 CAGAAACTAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.32, C:0.20, G:0.32, T:0.17
Consensus pattern (34 bp):
GGAACTGAGAGTCCACAGGAACTAGGAATCCATA
Left flanking sequence: Indices 1523 -- 2022
AAAGACTAAAAGAAGAGCTTACGAGAAAGCAGAACTAAGTAGGTCAAGTCTAGCCACATGCTAGT
GGGAAGGGCCTTGTAGTCACCACTCACCTATCCGCGGCCCTAACGCACCTGTGACGCTCCCCAGG
TGCCCCACGGTTCCAGCGGAGTCACCGTGCGGCCGCACTCCTGTGCACCACAGCTGCACCGCTCG
TGCACTTCCCGCCCGGGGCATTTTCAACACATTCACTGCATCCACCGCGACGTTCCGGCCCAATC
AGTGCTAACGCGTGCAGAGTCCATCGCCAGGTGCATGGGTGTAGGTGAGGGAAGGGGATGAAGGG
GTGGGAGGGTAGGGTGAAGGTGAAGACGAGAGGAAGTGGAGGTATGTAGGACCAGACTGTGCCAG
AATAAAGCCAGTAGAGCTGGGAGCCATAGAGCCAGAATGCCAGAGTAGAGCCCGAAAGCCGGAGC
CCGAATATAGCCAATAAAGCCAGTGAGCCAGATTAACAGCCAATG
Right flanking sequence: Indices 2089 -- 2588
CAGAAACTATGACCATATAGCATTTCCTAAGGTAAAGCATTAGTAGGACTACACCGACTAGACAC
CCAATAGGCTGATGGCCGGAATACACCCAATAGCCCACGTCCGGAATACACCCACACCTACACTA
CTACACCCAGGCCAACCACTGCCAACCCATCACCCCAGTCACCCACGGTCACACTACACTCACCC
CTCACACCCGCCTCGCTCTCTCCTCGCACGCTCTCTCCTCGCACGCTCTCTCCTCCACCCAATGT
TCCCCACCCCTCTCTCCTCCACCCTCGCTCCTCCACCTACGCTCCTCACACCCGCCCCTCCCTCG
CTCTCCCCCACTACCCTACCCACGCACCACCCCCACCGCCTCCCCCACCCTGCACTCCTCCCCGC
CTCCCGCACTTATCGAGCGGCGAGCATGATCCGCTTTACCCTTGCAGACACCCACGCCCATATTT
TTTCGGCCCCAAAAAATACTCTGCACCTCCGCTGTGTGCACTCTG
Found at i:2088 original size:17 final size:17
Alignment explanation
Indices: 2023--2097 Score: 71
Period size: 17 Copynumber: 4.4 Consensus size: 17
2013 ACAGCCAATG
* *
2023 GGAACTGGGAGTCCATA
1 GGAACTAGGAGTCCACA
* *
2040 GGAACTGGGAGTCCATA
1 GGAACTAGGAGTCCACA
*
2057 GGAACT-GAGTGTCCACA
1 GGAACTAG-GAGTCCACA
*
2074 GGAACTAGGAATCCACA
1 GGAACTAGGAGTCCACA
*
2091 GAAACTA
1 GGAACTA
2098 TGACCATATA
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
16 1 0.02
17 49 0.96
18 1 0.02
ACGTcount: A:0.35, C:0.20, G:0.29, T:0.16
Consensus pattern (17 bp):
GGAACTAGGAGTCCACA
Left flanking sequence: Indices 1523 -- 2022
AAAGACTAAAAGAAGAGCTTACGAGAAAGCAGAACTAAGTAGGTCAAGTCTAGCCACATGCTAGT
GGGAAGGGCCTTGTAGTCACCACTCACCTATCCGCGGCCCTAACGCACCTGTGACGCTCCCCAGG
TGCCCCACGGTTCCAGCGGAGTCACCGTGCGGCCGCACTCCTGTGCACCACAGCTGCACCGCTCG
TGCACTTCCCGCCCGGGGCATTTTCAACACATTCACTGCATCCACCGCGACGTTCCGGCCCAATC
AGTGCTAACGCGTGCAGAGTCCATCGCCAGGTGCATGGGTGTAGGTGAGGGAAGGGGATGAAGGG
GTGGGAGGGTAGGGTGAAGGTGAAGACGAGAGGAAGTGGAGGTATGTAGGACCAGACTGTGCCAG
AATAAAGCCAGTAGAGCTGGGAGCCATAGAGCCAGAATGCCAGAGTAGAGCCCGAAAGCCGGAGC
CCGAATATAGCCAATAAAGCCAGTGAGCCAGATTAACAGCCAATG
Right flanking sequence: Indices 2098 -- 2597
TGACCATATAGCATTTCCTAAGGTAAAGCATTAGTAGGACTACACCGACTAGACACCCAATAGGC
TGATGGCCGGAATACACCCAATAGCCCACGTCCGGAATACACCCACACCTACACTACTACACCCA
GGCCAACCACTGCCAACCCATCACCCCAGTCACCCACGGTCACACTACACTCACCCCTCACACCC
GCCTCGCTCTCTCCTCGCACGCTCTCTCCTCGCACGCTCTCTCCTCCACCCAATGTTCCCCACCC
CTCTCTCCTCCACCCTCGCTCCTCCACCTACGCTCCTCACACCCGCCCCTCCCTCGCTCTCCCCC
ACTACCCTACCCACGCACCACCCCCACCGCCTCCCCCACCCTGCACTCCTCCCCGCCTCCCGCAC
TTATCGAGCGGCGAGCATGATCCGCTTTACCCTTGCAGACACCCACGCCCATATTTTTTCGGCCC
CAAAAAATACTCTGCACCTCCGCTGTGTGCACTCTGCACCTCGCA
Found at i:2317 original size:15 final size:15
Alignment explanation
Indices: 2297--2338 Score: 84
Period size: 15 Copynumber: 2.8 Consensus size: 15
2287 ACACCCGCCT
2297 CGCTCTCTCCTCGCA
1 CGCTCTCTCCTCGCA
2312 CGCTCTCTCCTCGCA
1 CGCTCTCTCCTCGCA
2327 CGCTCTCTCCTC
1 CGCTCTCTCCTC
2339 CACCCAATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.05, C:0.55, G:0.12, T:0.29
Consensus pattern (15 bp):
CGCTCTCTCCTCGCA
Left flanking sequence: Indices 1797 -- 2296
CAGAGTCCATCGCCAGGTGCATGGGTGTAGGTGAGGGAAGGGGATGAAGGGGTGGGAGGGTAGGG
TGAAGGTGAAGACGAGAGGAAGTGGAGGTATGTAGGACCAGACTGTGCCAGAATAAAGCCAGTAG
AGCTGGGAGCCATAGAGCCAGAATGCCAGAGTAGAGCCCGAAAGCCGGAGCCCGAATATAGCCAA
TAAAGCCAGTGAGCCAGATTAACAGCCAATGGGAACTGGGAGTCCATAGGAACTGGGAGTCCATA
GGAACTGAGTGTCCACAGGAACTAGGAATCCACAGAAACTATGACCATATAGCATTTCCTAAGGT
AAAGCATTAGTAGGACTACACCGACTAGACACCCAATAGGCTGATGGCCGGAATACACCCAATAG
CCCACGTCCGGAATACACCCACACCTACACTACTACACCCAGGCCAACCACTGCCAACCCATCAC
CCCAGTCACCCACGGTCACACTACACTCACCCCTCACACCCGCCT
Right flanking sequence: Indices 2339 -- 2838
CACCCAATGTTCCCCACCCCTCTCTCCTCCACCCTCGCTCCTCCACCTACGCTCCTCACACCCGC
CCCTCCCTCGCTCTCCCCCACTACCCTACCCACGCACCACCCCCACCGCCTCCCCCACCCTGCAC
TCCTCCCCGCCTCCCGCACTTATCGAGCGGCGAGCATGATCCGCTTTACCCTTGCAGACACCCAC
GCCCATATTTTTTCGGCCCCAAAAAATACTCTGCACCTCCGCTGTGTGCACTCTGCACCTCGCAG
CGCCGCCAAATCATGCCCACCGGTTTTTTTGTCCCTACACCACTCGTGGATGAACGACGACCGGG
GTCCTGCCGCCGCAAAACGCACCCGCGCCCTGGGCGAGGTGCTCGACTACCTCCTCCAGGAGTTC
GACCACAACCACAACCCGCTGCCCGACCACCGCAAACACATGGCGTCCCGCACGGGGATGCTGGA
GAAGGCGGTTCGGATCTGGTTCCAGAACCGCCGCGCCAAGTTGCG
Found at i:2373 original size:14 final size:14
Alignment explanation
Indices: 2299--2385 Score: 79
Period size: 15 Copynumber: 6.0 Consensus size: 14
2289 ACCCGCCTCG
*
2299 CTCTCTCCTCGCACG
1 CTCTCTCCTC-CACC
*
2314 CTCTCTCCTCGCACG
1 CTCTCTCCTC-CACC
2329 CTCTCTCCTCCACC
1 CTCTCTCCTCCACC
*
2343 CAATGT-TCC-CCACCC
1 C--TCTCTCCTCCA-CC
2358 CTCTCTCCTCCACC
1 CTCTCTCCTCCACC
*
2372 CTCGCTCCTCCACC
1 CTCTCTCCTCCACC
2386 TACGCTCCTC
Statistics
Matches: 63, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
13 2 0.03
14 25 0.40
15 34 0.54
16 2 0.03
ACGTcount: A:0.09, C:0.59, G:0.07, T:0.25
Consensus pattern (14 bp):
CTCTCTCCTCCACC
Left flanking sequence: Indices 1799 -- 2298
GAGTCCATCGCCAGGTGCATGGGTGTAGGTGAGGGAAGGGGATGAAGGGGTGGGAGGGTAGGGTG
AAGGTGAAGACGAGAGGAAGTGGAGGTATGTAGGACCAGACTGTGCCAGAATAAAGCCAGTAGAG
CTGGGAGCCATAGAGCCAGAATGCCAGAGTAGAGCCCGAAAGCCGGAGCCCGAATATAGCCAATA
AAGCCAGTGAGCCAGATTAACAGCCAATGGGAACTGGGAGTCCATAGGAACTGGGAGTCCATAGG
AACTGAGTGTCCACAGGAACTAGGAATCCACAGAAACTATGACCATATAGCATTTCCTAAGGTAA
AGCATTAGTAGGACTACACCGACTAGACACCCAATAGGCTGATGGCCGGAATACACCCAATAGCC
CACGTCCGGAATACACCCACACCTACACTACTACACCCAGGCCAACCACTGCCAACCCATCACCC
CAGTCACCCACGGTCACACTACACTCACCCCTCACACCCGCCTCG
Right flanking sequence: Indices 2386 -- 2885
TACGCTCCTCACACCCGCCCCTCCCTCGCTCTCCCCCACTACCCTACCCACGCACCACCCCCACC
GCCTCCCCCACCCTGCACTCCTCCCCGCCTCCCGCACTTATCGAGCGGCGAGCATGATCCGCTTT
ACCCTTGCAGACACCCACGCCCATATTTTTTCGGCCCCAAAAAATACTCTGCACCTCCGCTGTGT
GCACTCTGCACCTCGCAGCGCCGCCAAATCATGCCCACCGGTTTTTTTGTCCCTACACCACTCGT
GGATGAACGACGACCGGGGTCCTGCCGCCGCAAAACGCACCCGCGCCCTGGGCGAGGTGCTCGAC
TACCTCCTCCAGGAGTTCGACCACAACCACAACCCGCTGCCCGACCACCGCAAACACATGGCGTC
CCGCACGGGGATGCTGGAGAAGGCGGTTCGGATCTGGTTCCAGAACCGCCGCGCCAAGTTGCGCA
AGGTGGAGAAGATGAAGGCCCAGGCGGGCGCTGCCCCGGGGCTGG
Found at i:2384 original size:29 final size:29
Alignment explanation
Indices: 2299--2385 Score: 81
Period size: 29 Copynumber: 3.0 Consensus size: 29
2289 ACCCGCCTCG
* * *
2299 CTCTCTCCTCGCACGCTCTCTCCTCGCA-CG
1 CTCTCTCCTC-CACCCTCGCTCCTC-CACCC
*
2329 CTCTCTCCTCCACCCAAT-GTTCC-CCACCC
1 CTCTCTCCTCCACCC--TCGCTCCTCCACCC
2358 CTCTCTCCTCCACCCTCGCTCCTCCACC
1 CTCTCTCCTCCACCCTCGCTCCTCCACC
2386 TACGCTCCTC
Statistics
Matches: 47, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
27 1 0.02
28 6 0.13
29 26 0.55
30 13 0.28
31 1 0.02
ACGTcount: A:0.09, C:0.59, G:0.07, T:0.25
Consensus pattern (29 bp):
CTCTCTCCTCCACCCTCGCTCCTCCACCC
Left flanking sequence: Indices 1799 -- 2298
GAGTCCATCGCCAGGTGCATGGGTGTAGGTGAGGGAAGGGGATGAAGGGGTGGGAGGGTAGGGTG
AAGGTGAAGACGAGAGGAAGTGGAGGTATGTAGGACCAGACTGTGCCAGAATAAAGCCAGTAGAG
CTGGGAGCCATAGAGCCAGAATGCCAGAGTAGAGCCCGAAAGCCGGAGCCCGAATATAGCCAATA
AAGCCAGTGAGCCAGATTAACAGCCAATGGGAACTGGGAGTCCATAGGAACTGGGAGTCCATAGG
AACTGAGTGTCCACAGGAACTAGGAATCCACAGAAACTATGACCATATAGCATTTCCTAAGGTAA
AGCATTAGTAGGACTACACCGACTAGACACCCAATAGGCTGATGGCCGGAATACACCCAATAGCC
CACGTCCGGAATACACCCACACCTACACTACTACACCCAGGCCAACCACTGCCAACCCATCACCC
CAGTCACCCACGGTCACACTACACTCACCCCTCACACCCGCCTCG
Right flanking sequence: Indices 2386 -- 2885
TACGCTCCTCACACCCGCCCCTCCCTCGCTCTCCCCCACTACCCTACCCACGCACCACCCCCACC
GCCTCCCCCACCCTGCACTCCTCCCCGCCTCCCGCACTTATCGAGCGGCGAGCATGATCCGCTTT
ACCCTTGCAGACACCCACGCCCATATTTTTTCGGCCCCAAAAAATACTCTGCACCTCCGCTGTGT
GCACTCTGCACCTCGCAGCGCCGCCAAATCATGCCCACCGGTTTTTTTGTCCCTACACCACTCGT
GGATGAACGACGACCGGGGTCCTGCCGCCGCAAAACGCACCCGCGCCCTGGGCGAGGTGCTCGAC
TACCTCCTCCAGGAGTTCGACCACAACCACAACCCGCTGCCCGACCACCGCAAACACATGGCGTC
CCGCACGGGGATGCTGGAGAAGGCGGTTCGGATCTGGTTCCAGAACCGCCGCGCCAAGTTGCGCA
AGGTGGAGAAGATGAAGGCCCAGGCGGGCGCTGCCCCGGGGCTGG
Found at i:2391 original size:14 final size:13
Alignment explanation
Indices: 2357--2409 Score: 54
Period size: 14 Copynumber: 3.9 Consensus size: 13
2347 GTTCCCCACC
*
2357 CCTCTCTCCTCCA
1 CCTCGCTCCTCCA
2370 CCCTCGCTCCTCCA
1 -CCTCGCTCCTCCA
2384 CCTACGCTCCTCACA
1 CCT-CGCTCCTC-CA
*
2399 CC-CGCCCCTCC
1 CCTCGCTCCTCC
2410 CTCGCTCTCC
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
12 1 0.03
13 10 0.29
14 20 0.57
15 4 0.11
ACGTcount: A:0.09, C:0.64, G:0.06, T:0.21
Consensus pattern (13 bp):
CCTCGCTCCTCCA
Left flanking sequence: Indices 1857 -- 2356
TAGGGTGAAGGTGAAGACGAGAGGAAGTGGAGGTATGTAGGACCAGACTGTGCCAGAATAAAGCC
AGTAGAGCTGGGAGCCATAGAGCCAGAATGCCAGAGTAGAGCCCGAAAGCCGGAGCCCGAATATA
GCCAATAAAGCCAGTGAGCCAGATTAACAGCCAATGGGAACTGGGAGTCCATAGGAACTGGGAGT
CCATAGGAACTGAGTGTCCACAGGAACTAGGAATCCACAGAAACTATGACCATATAGCATTTCCT
AAGGTAAAGCATTAGTAGGACTACACCGACTAGACACCCAATAGGCTGATGGCCGGAATACACCC
AATAGCCCACGTCCGGAATACACCCACACCTACACTACTACACCCAGGCCAACCACTGCCAACCC
ATCACCCCAGTCACCCACGGTCACACTACACTCACCCCTCACACCCGCCTCGCTCTCTCCTCGCA
CGCTCTCTCCTCGCACGCTCTCTCCTCCACCCAATGTTCCCCACC
Right flanking sequence: Indices 2410 -- 2909
CTCGCTCTCCCCCACTACCCTACCCACGCACCACCCCCACCGCCTCCCCCACCCTGCACTCCTCC
CCGCCTCCCGCACTTATCGAGCGGCGAGCATGATCCGCTTTACCCTTGCAGACACCCACGCCCAT
ATTTTTTCGGCCCCAAAAAATACTCTGCACCTCCGCTGTGTGCACTCTGCACCTCGCAGCGCCGC
CAAATCATGCCCACCGGTTTTTTTGTCCCTACACCACTCGTGGATGAACGACGACCGGGGTCCTG
CCGCCGCAAAACGCACCCGCGCCCTGGGCGAGGTGCTCGACTACCTCCTCCAGGAGTTCGACCAC
AACCACAACCCGCTGCCCGACCACCGCAAACACATGGCGTCCCGCACGGGGATGCTGGAGAAGGC
GGTTCGGATCTGGTTCCAGAACCGCCGCGCCAAGTTGCGCAAGGTGGAGAAGATGAAGGCCCAGG
CGGGCGCTGCCCCGGGGCTGGCGCCCCTCTCCTCCTCCGCGTACG
Found at i:4251 original size:21 final size:21
Alignment explanation
Indices: 4200--4251 Score: 52
Period size: 21 Copynumber: 2.5 Consensus size: 21
4190 GTTTTAGGTT
* *
4200 GGTTCTGGTGGTTTGTGGGGA
1 GGTTATGGTGGTTTATGGGGA
* *
4221 GTTTGA-GGTGTTTTATGGGGA
1 GGTT-ATGGTGGTTTATGGGGA
4242 GGTTATGGTG
1 GGTTATGGTG
4252 AGTTGAGGAG
Statistics
Matches: 24, Mismatches: 5, Indels: 4
0.73 0.15 0.12
Matches are distributed among these distances:
20 1 0.04
21 23 0.96
ACGTcount: A:0.10, C:0.02, G:0.48, T:0.40
Consensus pattern (21 bp):
GGTTATGGTGGTTTATGGGGA
Left flanking sequence: Indices 3700 -- 4199
CGCCACCCAGGCGACGCTGGCGCTGCCCCCCGCGGTGCTCGCGGGGCTGGCGCTGGAGCTCGCGC
TCGGCGCCGAGCTCGCAACCATGGGTCACGGGCCCGAGCTCGCAACCCTTGGGTATCTGCCGATG
CTCCCGATGGACGACACGATCCTGCCGGCGCTGGCGGGGTCGGGGCCGGTGCACGCGAGTCCCGC
CACCCCCGACTTCTTTGCGTTTGGCGACTTGGACCCCCGGCGCGGGCTGGAGCTGCCGCTGACCG
CGGCGAACCCCGGGGACCCGCTGGCGCTGTACACCCACCAGCTGATGGGGGGCCAGCTGGAGAGC
GGGTACCCTGTGGACGGCGGGCTCGAGCTTGAGTTTGGCCCGTTGGACCGCGGGCCGGTGCTTGA
GGGGCCCCAGCCGAGTATGGATTCGTTTATAGATTATGGGGGCTACTGATGTACTAATGTTATGA
TAAGAGGAAGTGGTGTAGGGGTGGTTCTGGCGTAGGTTTTAGGTT
Right flanking sequence: Indices 4252 -- 4751
AGTTGAGGAGGTTTTGGGTTGGTTTTGAGTGGGTTATAGGTTGGTTTTGGGTGTGATGATGTGGT
TGAGTGGTGGATTATGGTATTGGGGGGTTGTTTTGACGGTGATGTGACGGTCAGGTAGTTTTCTG
GCTCTGTTTGGGCTCTCCAGGTGGTTTGAGTGTGAACAAGACAAGTATGGATGGATGGGTATACC
ATTGTATTCTCTACACTGAAAGTCACGCTACTAGTTTGTCAACCTCTGGTAGTAATACCAACCTT
TACTTTAAACCATTTTACTTAACCATTTATTCTATATGCCTCCATTTGTCCATTTGTTTCCATTC
GTCTCCATTTTTCACCTACTCGACCGTTTCTTAAACATTCTCTCGTTTGTCCAATCCCGTACGTA
GTACTACCCTTTACAAAGAACCATTTCACTTATCTAATTGTTACCATTTCTCTCCATTTCTCTCC
ATTTCTCCATTTCTCCATTTCTCCATTTCTCCATCTCTCTCCTTT
Found at i:4277 original size:11 final size:11
Alignment explanation
Indices: 4261--4303 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
4251 GAGTTGAGGA
4261 GGTTTTGGGTT
1 GGTTTTGGGTT
* *
4272 GGTTTTGAGTG
1 GGTTTTGGGTT
* *
4283 GGTTATAGGTT
1 GGTTTTGGGTT
4294 GGTTTTGGGT
1 GGTTTTGGGT
4304 GTGATGATGT
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.07, C:0.00, G:0.44, T:0.49
Consensus pattern (11 bp):
GGTTTTGGGTT
Left flanking sequence: Indices 3761 -- 4260
GCGCTCGGCGCCGAGCTCGCAACCATGGGTCACGGGCCCGAGCTCGCAACCCTTGGGTATCTGCC
GATGCTCCCGATGGACGACACGATCCTGCCGGCGCTGGCGGGGTCGGGGCCGGTGCACGCGAGTC
CCGCCACCCCCGACTTCTTTGCGTTTGGCGACTTGGACCCCCGGCGCGGGCTGGAGCTGCCGCTG
ACCGCGGCGAACCCCGGGGACCCGCTGGCGCTGTACACCCACCAGCTGATGGGGGGCCAGCTGGA
GAGCGGGTACCCTGTGGACGGCGGGCTCGAGCTTGAGTTTGGCCCGTTGGACCGCGGGCCGGTGC
TTGAGGGGCCCCAGCCGAGTATGGATTCGTTTATAGATTATGGGGGCTACTGATGTACTAATGTT
ATGATAAGAGGAAGTGGTGTAGGGGTGGTTCTGGCGTAGGTTTTAGGTTGGTTCTGGTGGTTTGT
GGGGAGTTTGAGGTGTTTTATGGGGAGGTTATGGTGAGTTGAGGA
Right flanking sequence: Indices 4304 -- 4803
GTGATGATGTGGTTGAGTGGTGGATTATGGTATTGGGGGGTTGTTTTGACGGTGATGTGACGGTC
AGGTAGTTTTCTGGCTCTGTTTGGGCTCTCCAGGTGGTTTGAGTGTGAACAAGACAAGTATGGAT
GGATGGGTATACCATTGTATTCTCTACACTGAAAGTCACGCTACTAGTTTGTCAACCTCTGGTAG
TAATACCAACCTTTACTTTAAACCATTTTACTTAACCATTTATTCTATATGCCTCCATTTGTCCA
TTTGTTTCCATTCGTCTCCATTTTTCACCTACTCGACCGTTTCTTAAACATTCTCTCGTTTGTCC
AATCCCGTACGTAGTACTACCCTTTACAAAGAACCATTTCACTTATCTAATTGTTACCATTTCTC
TCCATTTCTCTCCATTTCTCCATTTCTCCATTTCTCCATTTCTCCATCTCTCTCCTTTGTCCATT
TTTCACCTTCAACCGTTTCTTAAACTTTCTCGCTTCCCCTGGACC
Found at i:4713 original size:8 final size:8
Alignment explanation
Indices: 4692--4759 Score: 84
Period size: 8 Copynumber: 8.1 Consensus size: 8
4682 TTACCATTTC
4692 TCTCCATTT
1 TCTCCA-TT
4701 CTCTCCATT
1 -TCTCCATT
4710 TCTCCATT
1 TCTCCATT
4718 TCTCCATT
1 TCTCCATT
4726 TCTCCATT
1 TCTCCATT
4734 TCTCCATCT
1 TCTCCAT-T
4743 CTCTCC-TT
1 -TCTCCATT
*
4751 TGTCCATT
1 TCTCCATT
4759 T
1 T
4760 TTCACCTTCA
Statistics
Matches: 54, Mismatches: 1, Indels: 8
0.86 0.02 0.13
Matches are distributed among these distances:
7 4 0.07
8 35 0.65
9 4 0.07
10 11 0.20
ACGTcount: A:0.10, C:0.38, G:0.01, T:0.50
Consensus pattern (8 bp):
TCTCCATT
Left flanking sequence: Indices 4192 -- 4691
TTTAGGTTGGTTCTGGTGGTTTGTGGGGAGTTTGAGGTGTTTTATGGGGAGGTTATGGTGAGTTG
AGGAGGTTTTGGGTTGGTTTTGAGTGGGTTATAGGTTGGTTTTGGGTGTGATGATGTGGTTGAGT
GGTGGATTATGGTATTGGGGGGTTGTTTTGACGGTGATGTGACGGTCAGGTAGTTTTCTGGCTCT
GTTTGGGCTCTCCAGGTGGTTTGAGTGTGAACAAGACAAGTATGGATGGATGGGTATACCATTGT
ATTCTCTACACTGAAAGTCACGCTACTAGTTTGTCAACCTCTGGTAGTAATACCAACCTTTACTT
TAAACCATTTTACTTAACCATTTATTCTATATGCCTCCATTTGTCCATTTGTTTCCATTCGTCTC
CATTTTTCACCTACTCGACCGTTTCTTAAACATTCTCTCGTTTGTCCAATCCCGTACGTAGTACT
ACCCTTTACAAAGAACCATTTCACTTATCTAATTGTTACCATTTC
Right flanking sequence: Indices 4760 -- 5259
TTCACCTTCAACCGTTTCTTAAACTTTCTCGCTTCCCCTGGACCCTTACGCTCCCGCCTCGGTAA
CTCTCACAAGATCCACCCCTGAACCCACCACGGCTAACCACTTCCACACCACCCACACACCACAC
ACCACCCACCTAATCACCACCCATTCACCACTACCCTATACCCACGGCTACCGTTCTCCTCTTCC
CCACCCCCGCCGCCCTTTGCCCCATCGCCCAGATCGTTGTTGCGGCCCCTCCAAACCTAATACCT
TTTTCCTCCGCCCCAAACTCTGTTTCGTTGCTTGTGTCACCTCGCCCGGGCTGGAACCTCTTGCC
CGATTCGGCAGTGTTAGCGTGTGCATACCAACGGCCTGTCAACCGGGTCTCGGCCCAATCCAGCC
AGAGCCGAGGGCGAAGCGAGCCGAGCCCAGGCAACAATAGGCTGCCACCACCCGGGTATTGGCCA
CCACCACCCGAATCTTGGTGTTTTTTACTCTCGTTCGTGCGCCGT
Found at i:4734 original size:24 final size:26
Alignment explanation
Indices: 4685--4759 Score: 93
Period size: 24 Copynumber: 2.9 Consensus size: 26
4675 CTAATTGTTA
*
4685 CCATTTCTCTCCATTTCTCTCCATTTCT
1 CCATCTCTCTCCA-TT-TCTCCATTTCT
4713 CCAT-T-TCTCCATTTCTCCATTTCT
1 CCATCTCTCTCCATTTCTCCATTTCT
*
4737 CCATCTCTCTCC-TTTGTCCATTT
1 CCATCTCTCTCCATTTCTCCATTT
4760 TTCACCTTCA
Statistics
Matches: 44, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
24 15 0.34
25 13 0.30
26 11 0.25
27 1 0.02
28 4 0.09
ACGTcount: A:0.11, C:0.39, G:0.01, T:0.49
Consensus pattern (26 bp):
CCATCTCTCTCCATTTCTCCATTTCT
Left flanking sequence: Indices 4185 -- 4684
CGTAGGTTTTAGGTTGGTTCTGGTGGTTTGTGGGGAGTTTGAGGTGTTTTATGGGGAGGTTATGG
TGAGTTGAGGAGGTTTTGGGTTGGTTTTGAGTGGGTTATAGGTTGGTTTTGGGTGTGATGATGTG
GTTGAGTGGTGGATTATGGTATTGGGGGGTTGTTTTGACGGTGATGTGACGGTCAGGTAGTTTTC
TGGCTCTGTTTGGGCTCTCCAGGTGGTTTGAGTGTGAACAAGACAAGTATGGATGGATGGGTATA
CCATTGTATTCTCTACACTGAAAGTCACGCTACTAGTTTGTCAACCTCTGGTAGTAATACCAACC
TTTACTTTAAACCATTTTACTTAACCATTTATTCTATATGCCTCCATTTGTCCATTTGTTTCCAT
TCGTCTCCATTTTTCACCTACTCGACCGTTTCTTAAACATTCTCTCGTTTGTCCAATCCCGTACG
TAGTACTACCCTTTACAAAGAACCATTTCACTTATCTAATTGTTA
Right flanking sequence: Indices 4760 -- 5259
TTCACCTTCAACCGTTTCTTAAACTTTCTCGCTTCCCCTGGACCCTTACGCTCCCGCCTCGGTAA
CTCTCACAAGATCCACCCCTGAACCCACCACGGCTAACCACTTCCACACCACCCACACACCACAC
ACCACCCACCTAATCACCACCCATTCACCACTACCCTATACCCACGGCTACCGTTCTCCTCTTCC
CCACCCCCGCCGCCCTTTGCCCCATCGCCCAGATCGTTGTTGCGGCCCCTCCAAACCTAATACCT
TTTTCCTCCGCCCCAAACTCTGTTTCGTTGCTTGTGTCACCTCGCCCGGGCTGGAACCTCTTGCC
CGATTCGGCAGTGTTAGCGTGTGCATACCAACGGCCTGTCAACCGGGTCTCGGCCCAATCCAGCC
AGAGCCGAGGGCGAAGCGAGCCGAGCCCAGGCAACAATAGGCTGCCACCACCCGGGTATTGGCCA
CCACCACCCGAATCTTGGTGTTTTTTACTCTCGTTCGTGCGCCGT
Found at i:6736 original size:20 final size:20
Alignment explanation
Indices: 6701--6738 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
6691 CCCCCGTCAT
**
6701 CGTATTGTTCGTCCTGGGCG
1 CGTATTGTTCACCCTGGGCG
6721 CGTATTGTTCACCCTGGG
1 CGTATTGTTCACCCTGGG
6739 TGCATCGGGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.08, C:0.26, G:0.32, T:0.34
Consensus pattern (20 bp):
CGTATTGTTCACCCTGGGCG
Left flanking sequence: Indices 6201 -- 6700
GTGCATGGCGATCCACCTTTGTTCTGCTATTGTGGCCTCCCTTTGGCGGGAGTGTATACGGCTGG
TGAAGGCGATGGTGACTAAGAGTACCATGCAGGATTCTGGTGGAGGCACCAGTGGCGGGGGGAAA
CAGCGAATACGGAGGCTTACGGGGCAGTTTGACACGAAAGCTTTAGGTTGCGGTGGTTCCCCGAG
GTTGACATTGCTCTCAGCCCTGGCTGACGCACCAAGGGTCTCAGCCGTTGATTGTTCAGCAGACA
ATGTGTGGGGTCCGACAGACACTTTTAGGTTGCTCCCTGGGTGGGCTGCGTAGATTAGTGTAGAG
TATGCTCTGAAAGATTCTAACCGCTTGTAATGTCGCTTCTTTCTCGCTTCACGAAGAGCCCGGTC
CAGCGTAGGTATTGACGTATGCGTCACGGCTAAACGACGGGCCTCGAACCCACTCTAAAAACGCC
AGCACGATGACAGGCCTCTCTTGGGACATTTTAAGCCCCCGTCAT
Right flanking sequence: Indices 6739 -- 7238
TGCATCGGGTGTCTGCCTTGGTCTGCTTTTACGATACATATTCGTTTCAGTGGACAGCAAACAGG
GGCTTAGAAATGTCTCGAGGACTGCAACGTAACCTTTGTGGGAGTTTGTCACCGTAGGACCAGCC
ACAGCACCCATTGTTACACAAATCTAACACGGATAGATCACGTAATCGCAAAACCGGGCCCAGCA
GAGCCCACCAGATAGGGCCCACCAGATAGGGCCCACCAGATAGTGCCCAGCAAGTTTCAAGAAGC
CCTGTGAGACGGGTGTTCGAACTCGACCCCTCCTATAATCTCACTTCCTTGCTGTCTGCTCCAAG
AAATCCATCTCCTAAGCCTTTACTACTTTTAGTTACCTGCAACCATTTGACGCGCTCGCAAGTCT
ATATCGAAATAATATCCCCGACACCACAAAGCTTCCCGACAGTGTGGAGTACCCAGTCACGGGAG
CTTGGTTGGTGTCTCAGAGCAATTTGTGAGTCTCGTCTGACTTGC
Found at i:6955 original size:14 final size:14
Alignment explanation
Indices: 6936--6982 Score: 85
Period size: 14 Copynumber: 3.4 Consensus size: 14
6926 GCCCAGCAGA
6936 GCCCACCAGATAGG
1 GCCCACCAGATAGG
6950 GCCCACCAGATAGG
1 GCCCACCAGATAGG
*
6964 GCCCACCAGATAGT
1 GCCCACCAGATAGG
6978 GCCCA
1 GCCCA
6983 GCAAGTTTCA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
14 32 1.00
ACGTcount: A:0.28, C:0.38, G:0.26, T:0.09
Consensus pattern (14 bp):
GCCCACCAGATAGG
Left flanking sequence: Indices 6436 -- 6935
TCAGCCGTTGATTGTTCAGCAGACAATGTGTGGGGTCCGACAGACACTTTTAGGTTGCTCCCTGG
GTGGGCTGCGTAGATTAGTGTAGAGTATGCTCTGAAAGATTCTAACCGCTTGTAATGTCGCTTCT
TTCTCGCTTCACGAAGAGCCCGGTCCAGCGTAGGTATTGACGTATGCGTCACGGCTAAACGACGG
GCCTCGAACCCACTCTAAAAACGCCAGCACGATGACAGGCCTCTCTTGGGACATTTTAAGCCCCC
GTCATCGTATTGTTCGTCCTGGGCGCGTATTGTTCACCCTGGGTGCATCGGGTGTCTGCCTTGGT
CTGCTTTTACGATACATATTCGTTTCAGTGGACAGCAAACAGGGGCTTAGAAATGTCTCGAGGAC
TGCAACGTAACCTTTGTGGGAGTTTGTCACCGTAGGACCAGCCACAGCACCCATTGTTACACAAA
TCTAACACGGATAGATCACGTAATCGCAAAACCGGGCCCAGCAGA
Right flanking sequence: Indices 6983 -- 7482
GCAAGTTTCAAGAAGCCCTGTGAGACGGGTGTTCGAACTCGACCCCTCCTATAATCTCACTTCCT
TGCTGTCTGCTCCAAGAAATCCATCTCCTAAGCCTTTACTACTTTTAGTTACCTGCAACCATTTG
ACGCGCTCGCAAGTCTATATCGAAATAATATCCCCGACACCACAAAGCTTCCCGACAGTGTGGAG
TACCCAGTCACGGGAGCTTGGTTGGTGTCTCAGAGCAATTTGTGAGTCTCGTCTGACTTGCTGCG
GGCTTATCGAACTTTATCCCTCGCCCTTGCCAGACTCTTGTGCCATTTTCCTACTGTTGATGCTA
CTTGCCCAAAATGGGGCTACGAGTCAGAGCGCTAAGCTGAAAGCTGAGATAGCCTTTTATGTGGG
CTCTTTCTGCCCAATTGTCACTAGTGTGCCCCCGTCCATGGAGTTTTAGGTTGATTTCCCGGGTT
TTCTCCTACGGTGGTGACGAGTGTGCATATAGTGGTATTACAAGT
Found at i:6959 original size:24 final size:26
Alignment explanation
Indices: 6924--6982 Score: 68
Period size: 28 Copynumber: 2.3 Consensus size: 26
6914 TCGCAAAACC
*
6924 GGGCCCAGCAG-A-GCCCACCAGATA
1 GGGCCCACCAGAAGGCCCACCAGATA
6948 GGGCCCACCAGATAGGGCCCACCAGATA
1 GGGCCCACCAGA-A-GGCCCACCAGATA
*
6976 GTGCCCA
1 GGGCCCA
6983 GCAAGTTTCA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 10 0.34
26 1 0.03
28 18 0.62
ACGTcount: A:0.27, C:0.37, G:0.29, T:0.07
Consensus pattern (26 bp):
GGGCCCACCAGAAGGCCCACCAGATA
Left flanking sequence: Indices 6424 -- 6923
GCACCAAGGGTCTCAGCCGTTGATTGTTCAGCAGACAATGTGTGGGGTCCGACAGACACTTTTAG
GTTGCTCCCTGGGTGGGCTGCGTAGATTAGTGTAGAGTATGCTCTGAAAGATTCTAACCGCTTGT
AATGTCGCTTCTTTCTCGCTTCACGAAGAGCCCGGTCCAGCGTAGGTATTGACGTATGCGTCACG
GCTAAACGACGGGCCTCGAACCCACTCTAAAAACGCCAGCACGATGACAGGCCTCTCTTGGGACA
TTTTAAGCCCCCGTCATCGTATTGTTCGTCCTGGGCGCGTATTGTTCACCCTGGGTGCATCGGGT
GTCTGCCTTGGTCTGCTTTTACGATACATATTCGTTTCAGTGGACAGCAAACAGGGGCTTAGAAA
TGTCTCGAGGACTGCAACGTAACCTTTGTGGGAGTTTGTCACCGTAGGACCAGCCACAGCACCCA
TTGTTACACAAATCTAACACGGATAGATCACGTAATCGCAAAACC
Right flanking sequence: Indices 6983 -- 7482
GCAAGTTTCAAGAAGCCCTGTGAGACGGGTGTTCGAACTCGACCCCTCCTATAATCTCACTTCCT
TGCTGTCTGCTCCAAGAAATCCATCTCCTAAGCCTTTACTACTTTTAGTTACCTGCAACCATTTG
ACGCGCTCGCAAGTCTATATCGAAATAATATCCCCGACACCACAAAGCTTCCCGACAGTGTGGAG
TACCCAGTCACGGGAGCTTGGTTGGTGTCTCAGAGCAATTTGTGAGTCTCGTCTGACTTGCTGCG
GGCTTATCGAACTTTATCCCTCGCCCTTGCCAGACTCTTGTGCCATTTTCCTACTGTTGATGCTA
CTTGCCCAAAATGGGGCTACGAGTCAGAGCGCTAAGCTGAAAGCTGAGATAGCCTTTTATGTGGG
CTCTTTCTGCCCAATTGTCACTAGTGTGCCCCCGTCCATGGAGTTTTAGGTTGATTTCCCGGGTT
TTCTCCTACGGTGGTGACGAGTGTGCATATAGTGGTATTACAAGT
Found at i:8103 original size:10 final size:10
Alignment explanation
Indices: 8088--8129 Score: 52
Period size: 10 Copynumber: 4.4 Consensus size: 10
8078 CACGCACCAG
8088 CACATCACTA
1 CACATCACTA
*
8098 CACATCGC--
1 CACATCACTA
8106 CACATCACTA
1 CACATCACTA
*
8116 CACATCACCA
1 CACATCACTA
8126 CACA
1 CACA
8130 CCCGCGCGCC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
8 7 0.26
10 20 0.74
ACGTcount: A:0.38, C:0.45, G:0.02, T:0.14
Consensus pattern (10 bp):
CACATCACTA
Left flanking sequence: Indices 7588 -- 8087
AAATTTGGGAAAGCACGAACACGGGGGAACCTCTGTTCATTTTGGTTTAGATCACGTGATTTGCG
GTCACATGACACTAACAAATTGAAAATCATTGCCCTAGTGGTACAATAGCAAGTCAAAGGCTGGT
TTAGCTCTATCAAGTGGCATTTTGCTTATTCACCAGCTCCATTTCCACCCCATCGCATCACAGCT
GTTATTATATGCGATAGCGTTCTACAGATTTTGCAACCTACGCTTAACCATGTTACCTCCAAGCT
TCGAATATAATAACGCACCTAAATAGTAATGTTTTACATTATTTGATAGCTCAAGTGTGACTGAA
TCATTCATCTTGTATTTTTGACTTCCCCAGTGACCAGCACCTGGCGGCACCATTGTACGCACACA
AGCACACAACTGCACCACTGGGCAAACTCAAACAAAGCCTAGCATAACTCGACACACTGTAGCAC
ATAACTGCACACACCAACCAACCCACACATCTCTACACGCACCAG
Right flanking sequence: Indices 8130 -- 8629
CCCGCGCGCCGCACCAGATCAAACCTCACACCACTCCGAGGGCTCCCAACACCAACCACCTCATC
ACCCTTACCCCACCCACGATGCTCAGGACCGCCATACGATGGCTGAGCACAGCAGCAGCAGCCTC
TGCTGCAGCGAAACCATCCATCCAAACGCTTCTACCAAAGAAAAAGACGCTCAACCGCCTCCTCT
TCGACTTCGACTCGCTGCTCACCTACCGGAAGATGCTTCCGGTGCTCGATGCCATCTACACCAAT
CTCGACCGGCCCGACGCGATCGAGATCCCCTCGTATGCCCACGCCCGCGACTTGATGACGTTCAA
ACGGGTCTTGGGCGCCATTCGCTCGCAAACCTCTACGACCCACCCCCAGTTGATGGCGGTGGAGA
ACGAGCTCGTGGAACAGGCCGCTGAGCGCGGGCACAACGACGCAGTGGCAATGCTCGCGTTCGAC
ACCATCAAAGCGCGCTTGGCGAACAAGGATCTGGTGGCCAAGGAG
Found at i:8111 original size:18 final size:18
Alignment explanation
Indices: 8088--8127 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
8078 CACGCACCAG
*
8088 CACATCACTACACATCGC
1 CACATCACTACACATCAC
8106 CACATCACTACACATCAC
1 CACATCACTACACATCAC
8124 CACA
1 CACA
8128 CACCCGCGCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.38, C:0.45, G:0.03, T:0.15
Consensus pattern (18 bp):
CACATCACTACACATCAC
Left flanking sequence: Indices 7588 -- 8087
AAATTTGGGAAAGCACGAACACGGGGGAACCTCTGTTCATTTTGGTTTAGATCACGTGATTTGCG
GTCACATGACACTAACAAATTGAAAATCATTGCCCTAGTGGTACAATAGCAAGTCAAAGGCTGGT
TTAGCTCTATCAAGTGGCATTTTGCTTATTCACCAGCTCCATTTCCACCCCATCGCATCACAGCT
GTTATTATATGCGATAGCGTTCTACAGATTTTGCAACCTACGCTTAACCATGTTACCTCCAAGCT
TCGAATATAATAACGCACCTAAATAGTAATGTTTTACATTATTTGATAGCTCAAGTGTGACTGAA
TCATTCATCTTGTATTTTTGACTTCCCCAGTGACCAGCACCTGGCGGCACCATTGTACGCACACA
AGCACACAACTGCACCACTGGGCAAACTCAAACAAAGCCTAGCATAACTCGACACACTGTAGCAC
ATAACTGCACACACCAACCAACCCACACATCTCTACACGCACCAG
Right flanking sequence: Indices 8128 -- 8627
CACCCGCGCGCCGCACCAGATCAAACCTCACACCACTCCGAGGGCTCCCAACACCAACCACCTCA
TCACCCTTACCCCACCCACGATGCTCAGGACCGCCATACGATGGCTGAGCACAGCAGCAGCAGCC
TCTGCTGCAGCGAAACCATCCATCCAAACGCTTCTACCAAAGAAAAAGACGCTCAACCGCCTCCT
CTTCGACTTCGACTCGCTGCTCACCTACCGGAAGATGCTTCCGGTGCTCGATGCCATCTACACCA
ATCTCGACCGGCCCGACGCGATCGAGATCCCCTCGTATGCCCACGCCCGCGACTTGATGACGTTC
AAACGGGTCTTGGGCGCCATTCGCTCGCAAACCTCTACGACCCACCCCCAGTTGATGGCGGTGGA
GAACGAGCTCGTGGAACAGGCCGCTGAGCGCGGGCACAACGACGCAGTGGCAATGCTCGCGTTCG
ACACCATCAAAGCGCGCTTGGCGAACAAGGATCTGGTGGCCAAGG
Found at i:13893 original size:3 final size:3
Alignment explanation
Indices: 13885--14000 Score: 112
Period size: 3 Copynumber: 39.7 Consensus size: 3
13875 CAACCTCCAG
*
13885 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAC CAA
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
* * * * * * *
13933 CAC CAA CAC CAA C-A CAC CAA CAC CAA C-A CAC CAA CAC CAA CAC CAA
1 CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA CAA
* * *
13979 CAC CAA C-A CAC CAA CAC CAA CA
1 CAA CAA CAA CAA CAA CAA CAA CA
14001 CACCGATAAC
Statistics
Matches: 88, Mismatches: 22, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
2 6 0.07
3 82 0.93
ACGTcount: A:0.56, C:0.44, G:0.00, T:0.00
Consensus pattern (3 bp):
CAA
Left flanking sequence: Indices 13385 -- 13884
GGCCCCCTCTAACAAATCCCAGAGGTCTGCATGTAAAAACGGCCCCCTCTAACAAACGACCACCC
TACTATACGACGAGCTATACGACGACCATTCATTTCCTAAAGACTTTACGAGCATTACATAACTC
CTTATGTTAGCCGCTTTACGAGCTTACTTAATAGCCTAATGCGGCTTATACGTCGTGTGATTTGA
GTCACGTGACTTTACTGTTGATACCGTAGATAGCGTTGATTATAGGGAACCTGTATATATCCTAT
ATATTACAATAAGCCCCCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCCACTCCGAAGGCGC
ACCCAGTGCTTAACTAAATAATTATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGGG
GAAAAAACGGCGCCAATGGCACCCGATCCAACGAATCGAATCGGATACCATTGGCACCACCAACA
GGGGGAAAAGGAGCCATTGGCATCCAACCCTTAAACAACCTCCAG
Right flanking sequence: Indices 14001 -- 14500
CACCGATAACAACACACCAACACCAACACACCAACACCAACACACCAATAAGAAGGGGTGGTACC
GCTAGTACTTCTGATAGCGTCTCCCATATGGCAAAGGAAGCGAAGCCCAGGGGCTTGCAACTCCC
CGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCTGACGCTAGATTGCACCTCCCAC
CTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCACATGTCAGGACTGTTCGAGGACCC
GTAGCTGGTAGGTGGCCAACCTACCAGTAACAAACCCTGTCACCAGACCAACAGACGCTGAGCCA
TTATCCTGGCGCGAAGCGCCAACGGATAATGACCCTGCCGAGAGACTCCATCAGAAGTGCCAGCA
GCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAAGCTTTGATTTGCCTCCTTGGGG
GGATTTTTTTCCCCCATCTTCTTTGATTTCTTCTTTGCTTGTCGC
Found at i:13951 original size:14 final size:14
Alignment explanation
Indices: 13894--14048 Score: 201
Period size: 14 Copynumber: 11.2 Consensus size: 14
13884 GCAACAACAA
* *
13894 CAACAACAACAACAA
1 CAACACCAAC-ACAC
* *
13909 CAACAACAACAACAA
1 CAACACCAAC-ACAC
13924 CAACACC-A-ACAC
1 CAACACCAACACAC
13936 CAACACCAACACAC
1 CAACACCAACACAC
13950 CAACACCAACACAC
1 CAACACCAACACAC
13964 CAACACC-A-ACAC
1 CAACACCAACACAC
13976 CAACACCAACACAC
1 CAACACCAACACAC
13990 CAACACCAACACAC
1 CAACACCAACACAC
* * *
14004 CGATAACAACACAC
1 CAACACCAACACAC
14018 CAACACCAACACAC
1 CAACACCAACACAC
14032 CAACACCAACACAC
1 CAACACCAACACAC
14046 CAA
1 CAA
14049 TAAGAAGGGG
Statistics
Matches: 128, Mismatches: 8, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
12 21 0.16
13 3 0.02
14 83 0.65
15 21 0.16
ACGTcount: A:0.54, C:0.45, G:0.01, T:0.01
Consensus pattern (14 bp):
CAACACCAACACAC
Left flanking sequence: Indices 13394 -- 13893
TAACAAATCCCAGAGGTCTGCATGTAAAAACGGCCCCCTCTAACAAACGACCACCCTACTATACG
ACGAGCTATACGACGACCATTCATTTCCTAAAGACTTTACGAGCATTACATAACTCCTTATGTTA
GCCGCTTTACGAGCTTACTTAATAGCCTAATGCGGCTTATACGTCGTGTGATTTGAGTCACGTGA
CTTTACTGTTGATACCGTAGATAGCGTTGATTATAGGGAACCTGTATATATCCTATATATTACAA
TAAGCCCCCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCCACTCCGAAGGCGCACCCAGTGC
TTAACTAAATAATTATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGGGGAAAAAACG
GCGCCAATGGCACCCGATCCAACGAATCGAATCGGATACCATTGGCACCACCAACAGGGGGAAAA
GGAGCCATTGGCATCCAACCCTTAAACAACCTCCAGCAACAACAA
Right flanking sequence: Indices 14049 -- 14548
TAAGAAGGGGTGGTACCGCTAGTACTTCTGATAGCGTCTCCCATATGGCAAAGGAAGCGAAGCCC
AGGGGCTTGCAACTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCTGACGC
TAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCACATGTCA
GGACTGTTCGAGGACCCGTAGCTGGTAGGTGGCCAACCTACCAGTAACAAACCCTGTCACCAGAC
CAACAGACGCTGAGCCATTATCCTGGCGCGAAGCGCCAACGGATAATGACCCTGCCGAGAGACTC
CATCAGAAGTGCCAGCAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAAGCTTT
GATTTGCCTCCTTGGGGGGATTTTTTTCCCCCATCTTCTTTGATTTCTTCTTTGCTTGTCGCTGC
CTTCCGTAGTAACGGGAAAGGAGCCGGGCTTGCAGGGTGCAAGCG
Found at i:14001 original size:6 final size:6
Alignment explanation
Indices: 13888--14043 Score: 129
Period size: 6 Copynumber: 25.0 Consensus size: 6
13878 CCTCCAGCAA
* * * * * *
13888 CAACAA CAACAA CAACAA CAACAA CAACAA CAACAA CAACAC CAACAC
1 CAACAC CAACAC CAACAC CAACAC CAACAC CAACAC CAACAC CAACAC
13936 CAACAC CAACACAC CAACAC CAACACAC CAACAC CAACAC CAACAC CAACACAC
1 CAACAC C-A-ACAC CAACAC C-A-ACAC CAACAC CAACAC CAACAC C-A-ACAC
* * *
13990 CAACAC CAACA- CACCGA- TAACAA C-ACAC CAACAC CAACACAC CAACAC
1 CAACAC CAACAC CAAC-AC CAACAC CAACAC CAACAC C-A-ACAC CAACAC
14038 CAACAC
1 CAACAC
14044 ACCAATAAGA
Statistics
Matches: 133, Mismatches: 6, Indels: 22
0.83 0.04 0.14
Matches are distributed among these distances:
5 8 0.06
6 97 0.73
7 8 0.06
8 20 0.15
ACGTcount: A:0.54, C:0.45, G:0.01, T:0.01
Consensus pattern (6 bp):
CAACAC
Left flanking sequence: Indices 13388 -- 13887
CCCCTCTAACAAATCCCAGAGGTCTGCATGTAAAAACGGCCCCCTCTAACAAACGACCACCCTAC
TATACGACGAGCTATACGACGACCATTCATTTCCTAAAGACTTTACGAGCATTACATAACTCCTT
ATGTTAGCCGCTTTACGAGCTTACTTAATAGCCTAATGCGGCTTATACGTCGTGTGATTTGAGTC
ACGTGACTTTACTGTTGATACCGTAGATAGCGTTGATTATAGGGAACCTGTATATATCCTATATA
TTACAATAAGCCCCCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCCACTCCGAAGGCGCACC
CAGTGCTTAACTAAATAATTATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGGGGAA
AAAACGGCGCCAATGGCACCCGATCCAACGAATCGAATCGGATACCATTGGCACCACCAACAGGG
GGAAAAGGAGCCATTGGCATCCAACCCTTAAACAACCTCCAGCAA
Right flanking sequence: Indices 14044 -- 14543
ACCAATAAGAAGGGGTGGTACCGCTAGTACTTCTGATAGCGTCTCCCATATGGCAAAGGAAGCGA
AGCCCAGGGGCTTGCAACTCCCCGCGCCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCT
GACGCTAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCACA
TGTCAGGACTGTTCGAGGACCCGTAGCTGGTAGGTGGCCAACCTACCAGTAACAAACCCTGTCAC
CAGACCAACAGACGCTGAGCCATTATCCTGGCGCGAAGCGCCAACGGATAATGACCCTGCCGAGA
GACTCCATCAGAAGTGCCAGCAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAA
GCTTTGATTTGCCTCCTTGGGGGGATTTTTTTCCCCCATCTTCTTTGATTTCTTCTTTGCTTGTC
GCTGCCTTCCGTAGTAACGGGAAAGGAGCCGGGCTTGCAGGGTGC
Found at i:15296 original size:10 final size:10
Alignment explanation
Indices: 15263--15297 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
15253 TCATCAACAA
15263 ACCGTCGCAC
1 ACCGTCGCAC
* *
15273 ACCATCACAC
1 ACCGTCGCAC
15283 ACCGTCGCAC
1 ACCGTCGCAC
15293 ACCGT
1 ACCGT
15298 AACCAACCAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.26, C:0.49, G:0.14, T:0.11
Consensus pattern (10 bp):
ACCGTCGCAC
Left flanking sequence: Indices 14763 -- 15262
TGAGGTATAGAGAAGAAAAAATTGGTGGGAGGGGGAACTTGTGTTTATATGCTATTCGGAAACAC
TTGTGCAGGCTGGCAGAGTTTGTGGTTGAGGAAAGGGAAAGAACACGACTGGGCGGGGTGGTCGC
GTTAGAGAACAGATGAGTATTGGATGAGTATTGGGAACCCCGTAGTGGCTCTTGATGGCCTCGGT
GCACGTATCGTAGAGGTAGGTCGCACGCCGTCCCAAAGAGGCAAAGTGCACCAATGTCGCACGAG
GACAAAGACCAAATTTGCACCCGACCTGTACGAGCTGTGTAGCGTGCATAAGTGAAAGAGGGCAA
GTGGTGGTCACACAGTTGCAATGTAACATCGATCCCTCCAACACGTGAGGCGAAGTTGGCTCTCA
TGCCCTTACTGCACTGAATAGTAGCGAGGTAGACTACAGTGACTATTACATAGGGCTCGTCATAC
TCAAGACACCATAAGCGTACAAATACCAACACAGATCATCAACAA
Right flanking sequence: Indices 15298 -- 15797
AACCAACCATTGTCTATTATACTTATATACCATGCAACGGCGCCTACTCGGCAAGCTCGATGGGC
ACCTGCGACTCCTGTCGCTCCTTCAACGTAATCGGAATCGAGTCCTGGCGCACCGCTATTCGCCG
GAAACTGCCCTGGGTCCCCTGGGACCAGTCCAGCGGCCCCAGCAGGATGTCCATCAGGTACGGCT
GCGACTCGTCCAGCTCGCTAGCAGCAAACCACGGGTGCGCTAGCACGTCGGCCACGCTGTAGCGA
TGCTCAGCATCCACCACAAGCATCTTGTCGATGCAGTCGAGCGCCATGTCGTCGATATCGTCCCA
GTAGGGCGAAAAGAACGCGTACTTGCCCTCGACAATCTGCTCCTTCATCGACGGAGGCGCCAACT
CCTCCAGGAACGGGGGAAACCCACAGAGACACACGTAGAGCAACACCCCAGCCAGCCACACGTCC
ACCTTCAGGGTGTAATTGCGGTTTTTGGTGAGCACCTCGGGCGCC
Found at i:20685 original size:24 final size:24
Alignment explanation
Indices: 20610--20695 Score: 111
Period size: 24 Copynumber: 3.6 Consensus size: 24
20600 CCCAAAGAAT
20610 ACCAACCCACCCCCAAAACATGAA
1 ACCAACCCACCCCCAAAACATGAA
* * *
20634 AACAACCAATCTCCC-AAACATGAA
1 ACCAACCCA-CCCCCAAAACATGAA
* *
20658 ACCAACCCATCCCCAAAACATGAC
1 ACCAACCCACCCCCAAAACATGAA
20682 ACCAACCCACCCCC
1 ACCAACCCACCCCC
20696 GATAGTCGAC
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
23 3 0.06
24 44 0.86
25 4 0.08
ACGTcount: A:0.43, C:0.47, G:0.03, T:0.07
Consensus pattern (24 bp):
ACCAACCCACCCCCAAAACATGAA
Left flanking sequence: Indices 20110 -- 20609
ACGTAGCACCCAGAAGCGTCGGGAGAGCTGGAATTGTAGGGGTGAGGACACATTGTGTAGGTAAG
GGGCTGGAAGCCAAGAAAACCCAGGCTCCTGCTGGCGAATGTGTCCGTGACACTGACAGGCCGCA
GTCGCTTTCGCTGCTTGGGATTCACGCAACAAGCCATAAGCATGGGTACAATGTATCTGGTGAAG
TACAGGAGTTACAGGAGTCACAGACTACCACAAGTTGACCGTTGGCTGCAAACGCGAGACTTCCA
TGGCAGGCTTCCAGCGCTCCTGACGGTGGACCCCTGATGCAGACGTATGCAACCGTTTCAGTGCC
CGGATACGAGGCTATAAAGACAAAGCACCCCCTCGAGGGCTGTATGACGAAAAAGAGCGAAGTTC
AGCCGTGTAAGCAACCATCCAAGCAGCCGGGTGAGACGCCACCGTCCCCAGAGAGCCACGACTCG
CCCCCTCCAGTGTATGAGAACGGAGCCAACCCGACCCCAAAGAAT
Right flanking sequence: Indices 20696 -- 21195
GATAGTCGACTACGACTACCAGGCTGACATCAAGGGCGAGCCTCCCGCATACACCGACCACGAGC
CCACCGACGATGACGTCACTCCCGCCTACAGGTCCATCTTCTCCCCAAGCGGCCTCCACGTTCGC
CGCCACGAGAGCTCCATTAACGAGTGGCTCGGACACAACTGTCTCAACCAGTACCTGGTCTCCGA
CCCGTCGGGAAACCTTCTAGGCTACATCCGGGAGCAGGACGCGGGCACGCTCAAAGCGCTGTTCC
AGCGCCAGTTGTGTCCTGCAAGCCGGGCCTACGTGATCGAGTTCTTTGACCTCCACGGTGTCCCC
GTGCTCATGGTGTCCCGGGCTTTTAGTTTGTTCCACTCCCAGGTGAGCGTGTTTCTCGTGGTGGG
CGACGAAAAAGGCCAGCCCCAGTACAAACGGGTGGGGTTCTCGCGAACGAAGTACCACATGTTCA
AGCGCAAGTACGTGTTGAGCACGGGCACCCCGTACCGCCCCGTGG
Found at i:21572 original size:26 final size:26
Alignment explanation
Indices: 21524--21573 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
21514 GTGTATCGTG
*
21524 CCCAGCCACCTATAATCTATAATTGA
1 CCCAGCCACCTATAATATATAATTGA
*
21550 CCCAGCCACCTATAATATCTAATT
1 CCCAGCCACCTATAATATATAATT
21574 ACACGCGTCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.34, C:0.32, G:0.06, T:0.28
Consensus pattern (26 bp):
CCCAGCCACCTATAATATATAATTGA
Left flanking sequence: Indices 21024 -- 21523
CTCATGGTGTCCCGGGCTTTTAGTTTGTTCCACTCCCAGGTGAGCGTGTTTCTCGTGGTGGGCGA
CGAAAAAGGCCAGCCCCAGTACAAACGGGTGGGGTTCTCGCGAACGAAGTACCACATGTTCAAGC
GCAAGTACGTGTTGAGCACGGGCACCCCGTACCGCCCCGTGGAGTTTGGGTTTGTCAGCGCCAAG
CCGCTTGGGTTTACGTTTTTCATCAACAACGAGGACGGGGAAGAGGTGGCCCAGATCCGGCGGCG
GTGGTTGGGGCTCAAAAAGGAGACGTTTTCCTACGCTAACGAGTACGATGTCGACTTCCAGCGGC
TTCCGATGGTGCAGCGGGCGATCGTGGCCGGGTGTATGGTGCTGATCGACTTTGACTGTTTTACA
GAAGACAGTGAATAGGCGGAAGACTGAATAGACACGGACAACTGACAATTGATTCGGTGTTCAGA
CGCAATAATGGCACAAGTCACAGCCAATGGCAATTGTGTATCGTG
Right flanking sequence: Indices 21574 -- 22073
ACACGCGTCCACTACCATAATCGAGTCGCGACGGTAACCACTCGATCATACCACCACCTATCTAA
CAATACACACACCATAACACACACCACATACAACACACACACACAATACACAATATACACACACC
AACAGGGTACCATCCACCACTACAATAACACTACAATACCATTGCCTTCCCAACAACCCACCTCC
ATCCCTACATCCCCCCCTCCCTCTCTTCCCATGGTAGCGCCCGCGCGTTGAAAAATTCCACCACC
CGTGGCGACCACACCCATCCAATGCAAGCTCCCGTGGTGTATTTGAACGCCAACACCGAGCGGCA
GAGCGGCCGGCAGGCGCAGGTGGCCAACATCACCGCCGCCAAGGCGGTGGCTGACATCATCCGCA
CCTGTTTGGGCCCCAAGGCCATGCTCAAGATGCTTTTGGACCCCATGGGCGGGATCGTGCTCACC
AACGACGGCCACGCCATTCTCCGCGAGATCGACGTGCTGCACCCG
Found at i:21662 original size:14 final size:16
Alignment explanation
Indices: 21643--21683 Score: 52
Period size: 14 Copynumber: 2.7 Consensus size: 16
21633 ATCTAACAAT
21643 ACACACAC-CAT-AAC
1 ACACACACACATAAAC
21657 ACACAC-CACATACAAC
1 ACACACACACATA-AAC
21673 ACACACACACA
1 ACACACACACA
21684 ATACACAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
13 1 0.04
14 9 0.39
16 9 0.39
17 4 0.17
ACGTcount: A:0.51, C:0.44, G:0.00, T:0.05
Consensus pattern (16 bp):
ACACACACACATAAAC
Left flanking sequence: Indices 21143 -- 21642
CATGTTCAAGCGCAAGTACGTGTTGAGCACGGGCACCCCGTACCGCCCCGTGGAGTTTGGGTTTG
TCAGCGCCAAGCCGCTTGGGTTTACGTTTTTCATCAACAACGAGGACGGGGAAGAGGTGGCCCAG
ATCCGGCGGCGGTGGTTGGGGCTCAAAAAGGAGACGTTTTCCTACGCTAACGAGTACGATGTCGA
CTTCCAGCGGCTTCCGATGGTGCAGCGGGCGATCGTGGCCGGGTGTATGGTGCTGATCGACTTTG
ACTGTTTTACAGAAGACAGTGAATAGGCGGAAGACTGAATAGACACGGACAACTGACAATTGATT
CGGTGTTCAGACGCAATAATGGCACAAGTCACAGCCAATGGCAATTGTGTATCGTGCCCAGCCAC
CTATAATCTATAATTGACCCAGCCACCTATAATATCTAATTACACGCGTCCACTACCATAATCGA
GTCGCGACGGTAACCACTCGATCATACCACCACCTATCTAACAAT
Right flanking sequence: Indices 21684 -- 22183
ATACACAATATACACACACCAACAGGGTACCATCCACCACTACAATAACACTACAATACCATTGC
CTTCCCAACAACCCACCTCCATCCCTACATCCCCCCCTCCCTCTCTTCCCATGGTAGCGCCCGCG
CGTTGAAAAATTCCACCACCCGTGGCGACCACACCCATCCAATGCAAGCTCCCGTGGTGTATTTG
AACGCCAACACCGAGCGGCAGAGCGGCCGGCAGGCGCAGGTGGCCAACATCACCGCCGCCAAGGC
GGTGGCTGACATCATCCGCACCTGTTTGGGCCCCAAGGCCATGCTCAAGATGCTTTTGGACCCCA
TGGGCGGGATCGTGCTCACCAACGACGGCCACGCCATTCTCCGCGAGATCGACGTGCTGCACCCG
GCAGCCAAGCTGATGATTGAGCTCCTGCGCACCCAGGACGAGGAGGTGGGCGACGGCACCACCAC
CGTGATCATCTTGGCCGGCGAAATCCTCGCCCAGACGTTTCCCTA
Found at i:21687 original size:18 final size:16
Alignment explanation
Indices: 21654--21688 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
21644 CACACACCAT
21654 AACACACACCACATAC
1 AACACACACCACATAC
21670 AACACACACACACAATAC
1 AACACACAC-CAC-ATAC
21688 A
1 A
21689 CAATATACAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 9 0.53
17 3 0.18
18 5 0.29
ACGTcount: A:0.54, C:0.40, G:0.00, T:0.06
Consensus pattern (16 bp):
AACACACACCACATAC
Left flanking sequence: Indices 21154 -- 21653
GCAAGTACGTGTTGAGCACGGGCACCCCGTACCGCCCCGTGGAGTTTGGGTTTGTCAGCGCCAAG
CCGCTTGGGTTTACGTTTTTCATCAACAACGAGGACGGGGAAGAGGTGGCCCAGATCCGGCGGCG
GTGGTTGGGGCTCAAAAAGGAGACGTTTTCCTACGCTAACGAGTACGATGTCGACTTCCAGCGGC
TTCCGATGGTGCAGCGGGCGATCGTGGCCGGGTGTATGGTGCTGATCGACTTTGACTGTTTTACA
GAAGACAGTGAATAGGCGGAAGACTGAATAGACACGGACAACTGACAATTGATTCGGTGTTCAGA
CGCAATAATGGCACAAGTCACAGCCAATGGCAATTGTGTATCGTGCCCAGCCACCTATAATCTAT
AATTGACCCAGCCACCTATAATATCTAATTACACGCGTCCACTACCATAATCGAGTCGCGACGGT
AACCACTCGATCATACCACCACCTATCTAACAATACACACACCAT
Right flanking sequence: Indices 21689 -- 22188
CAATATACACACACCAACAGGGTACCATCCACCACTACAATAACACTACAATACCATTGCCTTCC
CAACAACCCACCTCCATCCCTACATCCCCCCCTCCCTCTCTTCCCATGGTAGCGCCCGCGCGTTG
AAAAATTCCACCACCCGTGGCGACCACACCCATCCAATGCAAGCTCCCGTGGTGTATTTGAACGC
CAACACCGAGCGGCAGAGCGGCCGGCAGGCGCAGGTGGCCAACATCACCGCCGCCAAGGCGGTGG
CTGACATCATCCGCACCTGTTTGGGCCCCAAGGCCATGCTCAAGATGCTTTTGGACCCCATGGGC
GGGATCGTGCTCACCAACGACGGCCACGCCATTCTCCGCGAGATCGACGTGCTGCACCCGGCAGC
CAAGCTGATGATTGAGCTCCTGCGCACCCAGGACGAGGAGGTGGGCGACGGCACCACCACCGTGA
TCATCTTGGCCGGCGAAATCCTCGCCCAGACGTTTCCCTACATCG
Found at i:23588 original size:23 final size:21
Alignment explanation
Indices: 23480--23588 Score: 69
Period size: 23 Copynumber: 4.8 Consensus size: 21
23470 TTGGGTGGAT
23480 GATGGTG-TGT-GGGTGAGGAA
1 GATGGTGATGTAGGGTGAGG-A
* *
23500 GATGGAGGTTGTAGGGTGAGGGA
1 GATGG-TGATGTAGGGTGA-GGA
* *
23523 GATGTGGTAATTGTGGGGTGAGGAA
1 GA--TGGTGA-TGTAGGGTGAGG-A
*
23548 GATGGTGGATGTAAGGTGAGAGA
1 GATGGT-GATGTAGGGTGAG-GA
23571 GATGGTGATGGTAGGGTG
1 GATGGTGAT-GTAGGGTG
23589 TGGTTATTGT
Statistics
Matches: 69, Mismatches: 9, Indels: 19
0.71 0.09 0.20
Matches are distributed among these distances:
20 5 0.07
21 1 0.01
22 6 0.09
23 36 0.52
24 6 0.09
25 15 0.22
ACGTcount: A:0.23, C:0.00, G:0.52, T:0.25
Consensus pattern (21 bp):
GATGGTGATGTAGGGTGAGGA
Left flanking sequence: Indices 22980 -- 23479
GGCGGTTCCAAGGACATTTTGAACGAGATCGAGCGCAATTTGCACGACGCCATGGCCGTGTGCCG
CAACGTGATGTTCGAGCCGTCGTTGGCGCCCGGTGGCGGTGCCACCGAGATGGCGGTGTCGGTGC
GGTTGGCCGAGAAGGCCAAGCTGATCGAAGGGGTGGCCCAGTGGCCGTACCAGGCGGTGGCGGAT
GCGTTTGAGGTGATTCCCCGCACCCTCATCCAGAACTGCGGCGGCAACCCGATCCGGGTGTTGTC
GCAGCTCCGAGCCAAGCACGCGCACGGCGAGCACACCTGGGGTATCGATGGCGACCACGGCAAGG
TGGTGGACATGCGCGAGTACGGGATCTGGGAGCCCGAGGTGATCAAGCAGCAGTCGATCAAGACG
GCGATCGACCTGGCGTCGTTGTTATTGCGGGTGGACGACATTGTGTCCGGGGTGAGAAAGGCTTA
GTTAATACATAATGGTAAGGAGGTTTGTAGGGGTGTTGGGTGGAT
Right flanking sequence: Indices 23589 -- 24088
TGGTTATTGTTTGGTGTGCCATAGATGATGGATTCATGGGATGCTGTGTATCCACATGGATTCGT
GAATGGGTGTTTTTGGCACATCAACGGTTGACGTACCTCGGGCTTATTATTTTATGTTATATGTC
GCTTTTCAAGGGACATATTGACAGCATAACGGTGTGGAGGTTATTACGGACATCAAACGTACAGA
CGCGGGATACCTGGGTGGTTACAGGGCCCTAGGGGTGGGTATCTTCTCCTGGTCTCCACCAACTA
TTTTCCCCACCAAGCTCTAAGACCGCGTAAATATTTCACCACCCACTTGTATCCTACCCACCTCA
CCCGACATGGCGCCATATGTACCCCGTTCCTTACACCACATACCCTGTGCCAAAAATATCAGAAA
ATAGAACGTTTGGGCGATCGTCCGATCTCCCCACGTCGCTTACATTTCGCGTACCTGTGATACGC
CAACCGGTGTCACAAAGCGATGAGCGATAGAAGTAAGGGGAAATA
Found at i:25560 original size:12 final size:12
Alignment explanation
Indices: 25521--25565 Score: 63
Period size: 12 Copynumber: 3.8 Consensus size: 12
25511 TATTGCTTGT
*
25521 CTTCCTCTCTTC
1 CTTCCCCTCTTC
*
25533 CTTTCCCTCTTC
1 CTTCCCCTCTTC
25545 CTTCCCCTCTTC
1 CTTCCCCTCTTC
*
25557 CTTCTCCTC
1 CTTCCCCTC
25566 ACCCGTCTCC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47
Consensus pattern (12 bp):
CTTCCCCTCTTC
Left flanking sequence: Indices 25021 -- 25520
TTCTTGTTTGTGTGTTTGCGTTGGTTAGTGGGTGGTGAGAATTTGTCACGTAGGTGTGATGGGCT
TTGACTCTGGTAGCTACTGTGGACATCTACAAGAAGAGTCTACAAGAAGTGGAGTAGGGGCCAGT
CCAGTGGATGGTGCTTCATTGGTGCTTTGCTCGGGGCCTATCCGCGCAACTTTGTGTACCTTTGT
GTAGTACCTTCGCTTCCTGGCCAATCTCGGACCCGGACTATCTCCGCGCTACCTCCGAGCACCAC
GGGTGAGTCATTGACGAACGCTAAAGCGAGCGACAAAGGAACGACAAAGCAAGACAAAGCAGTGA
AAAATAGTAGAGTCACTGTCGCAGGATATTCATACTCAAAACTCTCAGCACTTCTCTTTACCTAT
CTCTCACTCACCACGGCTGCAAATGGCTGCAAAATCGTGATGACAAAACAATAGTTGCACGTATC
GCTTCAATATTTGTTACTTCGTCTATTACTTTGTCTATTGCTTGT
Right flanking sequence: Indices 25566 -- 26065
ACCCGTCTCCTCGCCCTTTTCCTCTCACCTACTGGCCAAGATACTGGGGACAGTGGCAGAAATTC
TCCGCCCACAACTTCGACACGTTTACAGGCACCTTCAAGTGGATAAACTCCCCGTTCAGAAGACC
AAAACTCATCCGGAGGTAGTACATCCGCCCCAAAAAGCACAGCTGGAACGACGGCACCAACGTGA
ACCGGTCGCACGCCCGCTCAAGCGACGGGTCGTACCCCTTGAGCTGCATGGTGTCCATGTCGAGC
GCAAAATCAAACGTCTTTTGGTAAGTCCCGTTCGACTGCTGCACCCACTCCTGCTTGTTGAGCAT
TCTATAAGTGATTTTGGCCCCCTTGGGGTCCCGCACATCTGGCACAGAGAGGTTATTGGTCTTCA
GCGAGAGCAAACACACCCCTTTCAAGTCGTCTACCAACTGTTTCTCAATCTTGAAGTTCTGGGGT
CCCAACTTTTGGAAAAGATCGTAGATCTCTGTCAGGAGCGCCCGG
Found at i:46218 original size:14 final size:14
Alignment explanation
Indices: 46199--46229 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
46189 AGTAAGGGTG
46199 GGGAAGGGAGAGAT
1 GGGAAGGGAGAGAT
46213 GGGAAGGGAGAGAT
1 GGGAAGGGAGAGAT
46227 GGG
1 GGG
46230 TGCCCAAACG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.61, T:0.06
Consensus pattern (14 bp):
GGGAAGGGAGAGAT
Left flanking sequence: Indices 45699 -- 46198
ATGTAAATTCAAGACGGCACCAGTCGGTGCTGGCGTTCACAAGGTCATTGATGCCAAGTGTTTGG
CCACACTCACGTCGTGGCAGAGGTGTGCGATGGTTTGCTACCGCTGGTACGAGGTTCGTATGCCA
AGTGAAGTTAAAATGTGCTCGAGTTTGGGTACGTGCACGTCCGCCTCGGTTGGGTGGGCAAGCGA
GGCGGCGACGATCGCGCTTCCGCCGCTGCCGATGGCCGTTCGAAGCGGTTTTGTCACCTGTTAGC
CCCGAACCTCGGAGGTGACTGGGGTTGGTGGACGCGACGGGCATCACTCATAACCAACCAGCAAT
CGTAGGCACGGCTCACAGGTTAATCCGGGAGGGCTGGTACTGGCGAAGGGGGGCCGTTTACGAAG
AGTTCGGGACGGCTGTGACGTCAGAAGCACGTTTGCAGGGTGCAGGGGTCACCCGTGGACGCGTG
GGTATTGGCACGCAACTGTTGGAGGCAGTTGGACGAGTAAGGGTG
Right flanking sequence: Indices 46230 -- 46729
TGCCCAAACGAACAGCCGGGTTGAACCACGGCGACGGCTGGGGCTGTTGGGCTCTGACCTGAGGT
ACTTGCTTGCATGCAGCGAAGCTAAGCATTGAATCTGAGTGATAATTCCCCAGGGCTTAGTTTGA
TTACAGTCCCTGGCATTTCAAGCCGCCAATTACGAAGAGCCTGCTGATATCCTTGTAAACATTCC
CCACTTGCACTGGCCTGTGCTCAAAATGAGGAAGTGTACAATCTGGAGTAGTGAAATTTTGTGAT
TGGGCTTCGAACCACTCCAAACGAACCAGGCTCGAAGGGTTACTGCCTCATACTGTCACTGCTGT
TAGTATTGAAAGAGCTTTTGTGAGTTAGGCTGTGAACTAGTCGGAAACAAGCAGTTGAACCAGCA
CTGTACGCGTATGCCCACTGTTCAACGATGACAGAGCCATTGCCTTGGCATTGACACACACCACC
GGGTCTAGAATCAGCTCTTAATTACAACTCTTCTCCCTAAGTCCA
Found at i:48716 original size:14 final size:14
Alignment explanation
Indices: 48707--48733 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
48697 CGCTCCAGTG
48707 CCCACACTCCAATA
1 CCCACACTCCAATA
48721 CCCACACTCCAAT
1 CCCACACTCCAAT
48734 GCTCTCGCTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.52, G:0.00, T:0.15
Consensus pattern (14 bp):
CCCACACTCCAATA
Left flanking sequence: Indices 48207 -- 48706
CTAAGCTTCCTGCCAGGTGCCTATCTGTCTTGTTCGACTGCACTATCTATAGATAAGGACTGTAT
ATCAAAGCAGATAGGTTGCTGGCACAAACCAGCGTTTGAGTCACCGCGGAAGCCAAGCCGTAGCG
GCTGCGATATATAACCCGGGATCTTCCTGTTGGCTCCAATCTCACCGTCACCGGTTGCCAAGTGA
TACCATTCCAAGAAAAAACCGATCCATCCACCCGGTCACCTATCGATATATCCGGCCAGTATTTA
ATACCACCACCACAAGCACCCACACCATGAGTTTTGCTGCCACGATGCTGCGTTTCTGGAAGACG
TGGAAACGCCAACCTGAGGAGCGTTTGAACCGTTTCAAGCGTGATACCCACACCTGGAAGGGCTA
GGACATTAATATATTTAGCAATCCACAAATGATCAGGAACGGGCTCCAGAGCCTGGTAGTAGTTG
CGCCAACACATATTCGGCCCAGAAACAAGTGAACACGCTCCAGTG
Right flanking sequence: Indices 48734 -- 49233
GCTCTCGCTCCGGTTATTATCCCGTACCGATCAACCCCGCGATCACCCCGCGGCTGAAGCACAGA
AGAACCCCTGGCCCAGACCCAAACTGGACCACGCAAACACACTACCCCTGAGCCCAGCCCGCAGA
CAAGCACAGGCTCGCCTGGTTTCAGGCTAATCCACCACAATTCCGGGCCCCCGGGGACGTTTCCG
ATCGCGGCCGTGCTTCGGTACGCATTTCCGAGTCTAGACCCTCGCCTGCCACTGCCCGTTCCACC
CACAAACACAATTTCAGCCTATTTCATTCTTAATCATAATACATTAACATACAAAGCAAACATTA
ATTAGTCCTGGTAGCCAGGGGTGACGAAGTACTTGTAGATGGCCTTTTTGAACTTGCCCGGCTTT
TTCTTCGACTTGGTGCCATCCGAGGCATCAGTGGCCCGCGAGTGGGTGCGTGCGGCCAGGGCACC
CTCAGGGTGGCCCACAGCCACTGGGTGGGCTTCGGGAGCCACCTC
Found at i:49754 original size:18 final size:18
Alignment explanation
Indices: 49731--49771 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
49721 GTGGGGGTGG
*
49731 CCAGCTGGCCCGAGACCC
1 CCAGCTGGCCCGAGACAC
49749 CCAGCTGGCCCGAGACAC
1 CCAGCTGGCCCGAGACAC
49767 CCAGC
1 CCAGC
49772 GCCCGCGGCG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.20, C:0.49, G:0.27, T:0.05
Consensus pattern (18 bp):
CCAGCTGGCCCGAGACAC
Left flanking sequence: Indices 49231 -- 49730
CTCGTTCGGGTTGGTGGCCACCGTCAGCTTGGTGGGCGGCCCGGCGGACCCGTCCGAGTACTCAG
GAGACTCGGAGTGCGGGAACGCAGGCTTGGCCAACGGGTCGTGCTCGTAGTTGCCAGGGGGCGTG
GCAAAGAACGACAGGCCCTGGACCTTGCTCGGGGTCACGGGGTGGCCCGTGTGCGGCAGCGAGCC
CACCTGAGGCGTCTGGGGGGTCGCCTGGAGGTTGTCCTCCGAGAGATCGGTCACCACCGGGTGGT
TGCCCGTGGCCTTCGAGACTGCGGGTGTGCCCACCGACGACGTGGGCTGGGCACCCGAGTCGCTC
GGGACCGGCACAGGGGCCGGGGGGTCGCGGGCAGACGCCTTGCGGATCTTCTCCGCCTCCTTGGG
GTCCTTGCGGTCCTTTTTGCCAAAGTTGGCCAAGAAGGCAAACGGCTGAGACAGCCTGCGGGAGC
CCAGCGAGCTGCGACGAGGCAGCGCGGGGGCCTTGGTGGGGGTGG
Right flanking sequence: Indices 49772 -- 50271
GCCCGCGGCGACTTGTCAATCGAGGTGACAATCGGGGTGGTGTCCTCGGACTCCACGCCCTTCTG
GGCGGTCTTGGGCGTCACCGGCTCGGCCAACTGCTCGTCCACGGTGTCGATCTGCTCGCGCAAGT
CGTCCAGGTGGACCAGGTAGCGGTTGAAGCCCAGGGCCAACGCGGGGTCGCGCTCGCCCTGGTGG
TCGTTGTCGCTGTAGAACGAGGTAGCCAGCGGTTTGGGCTGGTGGCCGTAGCGAGAGCCCGAGGC
TCCGCCAGCACCAGCGGTGCTCGCACCAACGCCAGAGCTTCCACTTGCCCGCACATCCTCGCCAC
TGGGCGCGTCCATGGGTCCGCCCGTGGGGTCAGCAGCAACCACCACGTCGCCCACCTCGTCCACG
TGGGTGGTGGCCTTGTCGGTGTCCATGCCCACCAACCCGTGGCCCTGGCGCTGGGGCAGCACCGG
GTGCTTCAGGTACTCCTCCACCACCGAAAGCACCGCGCCCTCGCG
Found at i:50438 original size:18 final size:18
Alignment explanation
Indices: 50415--50449 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
50405 GGAGCGGCGC
*
50415 CAAACGACTTGTCAGCGG
1 CAAACGACTTATCAGCGG
50433 CAAACGACTTATCAGCG
1 CAAACGACTTATCAGCG
50450 TTTCCAGTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.29, G:0.23, T:0.17
Consensus pattern (18 bp):
CAAACGACTTATCAGCGG
Left flanking sequence: Indices 49915 -- 50414
CAGGTAGCGGTTGAAGCCCAGGGCCAACGCGGGGTCGCGCTCGCCCTGGTGGTCGTTGTCGCTGT
AGAACGAGGTAGCCAGCGGTTTGGGCTGGTGGCCGTAGCGAGAGCCCGAGGCTCCGCCAGCACCA
GCGGTGCTCGCACCAACGCCAGAGCTTCCACTTGCCCGCACATCCTCGCCACTGGGCGCGTCCAT
GGGTCCGCCCGTGGGGTCAGCAGCAACCACCACGTCGCCCACCTCGTCCACGTGGGTGGTGGCCT
TGTCGGTGTCCATGCCCACCAACCCGTGGCCCTGGCGCTGGGGCAGCACCGGGTGCTTCAGGTAC
TCCTCCACCACCGAAAGCACCGCGCCCTCGCGCTCGGCATTGGCCCGGTTGGGCACCTCGCGAGC
CTCGCCCACCGAGGCGGAGCCCTGGGGAGGAGCAGGCTGCTCGACGGGGTCCAACCCGGGGGTGG
ACCCGAGGGTGATGGGCTCGGTGGTGAGGCCAGCGGGAGCGGCGC
Right flanking sequence: Indices 50450 -- 50949
TTTCCAGTCACCGGCTCGAAACCAGAGTCTCTAGCCACACCAGCATCTCTAGCCACACCAGCGTC
TCTAGACTCACCAGCTTCACCAAGTTCCGCACCCGGGCTTCTAACCTGTTGGTCTAACCCACCAG
CCAGGCTGTCAACGGGTCTGGAATCCTCGTGCTCGGGAATCGACCCTCCGAGAAGATCGCCCCGC
GAGCCAAAGTCGTAGTCGCTGGGCCGGGTGTTGTACCCATCCAACCGCGACGAGTTCAGGGTGTC
CGCCCGGTTGAACACAGGCGGGACAATGTCCGAGTCGTACAACGACACCAGCAGGGCGCGCTCGC
TGATGTTGTCGTTCTCCGCCGTCTTGAACGAGTCCTCGCGAGGCAACTGGGCCCGGGCCACCGCG
CTCAAGTCGTTCATCAGCGTGGTGTTGCTGACGGTGTCGGGCTGGGCGTCGATGTCCGCGAGCGT
GGGCACCTCGATGCGCTGGTCGCGAGCAAACTCGTCCAACGCAAT
Found at i:50526 original size:18 final size:18
Alignment explanation
Indices: 50470--50529 Score: 84
Period size: 18 Copynumber: 3.3 Consensus size: 18
50460 CCGGCTCGAA
*
50470 ACCAGAGTCTCTAGCCAC
1 ACCAGCGTCTCTAGCCAC
*
50488 ACCAGCATCTCTAGCCAC
1 ACCAGCGTCTCTAGCCAC
* *
50506 ACCAGCGTCTCTAGACTC
1 ACCAGCGTCTCTAGCCAC
50524 ACCAGC
1 ACCAGC
50530 TTCACCAAGT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 37 1.00
ACGTcount: A:0.27, C:0.42, G:0.15, T:0.17
Consensus pattern (18 bp):
ACCAGCGTCTCTAGCCAC
Left flanking sequence: Indices 49970 -- 50469
TTGTCGCTGTAGAACGAGGTAGCCAGCGGTTTGGGCTGGTGGCCGTAGCGAGAGCCCGAGGCTCC
GCCAGCACCAGCGGTGCTCGCACCAACGCCAGAGCTTCCACTTGCCCGCACATCCTCGCCACTGG
GCGCGTCCATGGGTCCGCCCGTGGGGTCAGCAGCAACCACCACGTCGCCCACCTCGTCCACGTGG
GTGGTGGCCTTGTCGGTGTCCATGCCCACCAACCCGTGGCCCTGGCGCTGGGGCAGCACCGGGTG
CTTCAGGTACTCCTCCACCACCGAAAGCACCGCGCCCTCGCGCTCGGCATTGGCCCGGTTGGGCA
CCTCGCGAGCCTCGCCCACCGAGGCGGAGCCCTGGGGAGGAGCAGGCTGCTCGACGGGGTCCAAC
CCGGGGGTGGACCCGAGGGTGATGGGCTCGGTGGTGAGGCCAGCGGGAGCGGCGCCAAACGACTT
GTCAGCGGCAAACGACTTATCAGCGTTTCCAGTCACCGGCTCGAA
Right flanking sequence: Indices 50530 -- 51029
TTCACCAAGTTCCGCACCCGGGCTTCTAACCTGTTGGTCTAACCCACCAGCCAGGCTGTCAACGG
GTCTGGAATCCTCGTGCTCGGGAATCGACCCTCCGAGAAGATCGCCCCGCGAGCCAAAGTCGTAG
TCGCTGGGCCGGGTGTTGTACCCATCCAACCGCGACGAGTTCAGGGTGTCCGCCCGGTTGAACAC
AGGCGGGACAATGTCCGAGTCGTACAACGACACCAGCAGGGCGCGCTCGCTGATGTTGTCGTTCT
CCGCCGTCTTGAACGAGTCCTCGCGAGGCAACTGGGCCCGGGCCACCGCGCTCAAGTCGTTCATC
AGCGTGGTGTTGCTGACGGTGTCGGGCTGGGCGTCGATGTCCGCGAGCGTGGGCACCTCGATGCG
CTGGTCGCGAGCAAACTCGTCCAACGCAATGTCGCTCAGGTCCACGGTGTCGAGGCCCAGGTGGT
CGAAGCGATGGGCGGCGCCGGCGAGAGCAGCACCAAACAACGCTC
Found at i:51744 original size:24 final size:24
Alignment explanation
Indices: 51697--51744 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
51687 CCTGTTCACC
** *
51697 CTGACCACCCAGCTGAGTATCCAA
1 CTGACCACCCAGCTGACCACCCAA
*
51721 CTGAGCACCCAGCTGACCACCCAA
1 CTGACCACCCAGCTGACCACCCAA
51745 ACGGTTGGTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.29, C:0.42, G:0.17, T:0.12
Consensus pattern (24 bp):
CTGACCACCCAGCTGACCACCCAA
Left flanking sequence: Indices 51197 -- 51696
CCGGGCTGCTCATTGTCAACCAGCTGCTTCTTTTCGGGCTGCTCGTCGATCCACTTGTCGGAGAC
CACTGCGGTTGGCTCAGACAAACCAGAGCCAAGCTCAGGCTTAGCTCTGTCACCAAGCAGAGTCG
CAGCGACCGGCTCAGTGGACCGTTCGAAACCAGCGTCGTCAGGCCCCAGGATCGTGGGCTCGATG
TTGGCCACGTCCTCTTCCGAGGCCTTGGGAGCGATCTCGGGAGCGGTGGGGGCGTCCGCCCAGTT
GCGCTTGATCAGGCGCTCGCGCATCACCTCCGGCGGAGGCGTGGTGAACTCCTCGTCGTTGTCCA
GGTCGTCGATCTCGGGCTCCACCATGCCGTACTCCTGGTTGGAGGTCAAGCCCGTGGGGTGAGAC
TCGAAGCCCGAGCCGAGAGTAGGGGTGGTGAACGCGTCCTTGGACACCTCGTCGCGGGCCTTGGG
CAAGGGAGCCGCCTCGGTGGCAATTGCTTCAGAGCCCTGTTCACC
Right flanking sequence: Indices 51745 -- 52244
ACGGTTGGTGTCAACCTCACCTAAGTGGCTGGTGTCAGCCTGACCCAATTGGTCGGTCTTGAGAT
CACCCACATTGGCAGTGACATCCTTCTCAGCCAAACGGTTGCTGACCTCACCCTTCTCACCCAGG
CGGTCAACACCAACCTCTCCCTTGTCCTTCGCCAACGCCAGCCCCCCCACGGCTCCGGCAATCGC
CAGCGCCGTGCCCACGCCCCACTTGTGCGGGTCGGACAGCGGCTCGGGCAACTCCGCCAGCGTGG
GCAACCCCTTGACCGCGGTGGTCAGGAGCGCGTCCTCGGGCACCGCCAGCGGGTTGGGAACCACC
AAACCGGGGCCCTCGTCCGTCTTGGGAGCCACCCGCGCCATCTCGGGACTCAGCGGCGCAGACTT
GCGCAACACCAGGTTCCGCGGCGACATCGGGTCGAGCGAGTGGTAGTCGCCCTCGGGAATCACCG
GTGGCGCCTCCGAAGCCTCCAACGGCTCCGCCTGCTTCGCGGTCT
Found at i:51765 original size:24 final size:24
Alignment explanation
Indices: 51738--51792 Score: 56
Period size: 24 Copynumber: 2.3 Consensus size: 24
51728 CCCAGCTGAC
*
51738 CACCCAAACGGTTGGTGTCAACCT
1 CACCCAAACGGCTGGTGTCAACCT
* ** *
51762 CACCTAAGTGGCTGGTGTCAGCCT
1 CACCCAAACGGCTGGTGTCAACCT
*
51786 GACCCAA
1 CACCCAA
51793 TTGGTCGGTC
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.24, C:0.33, G:0.24, T:0.20
Consensus pattern (24 bp):
CACCCAAACGGCTGGTGTCAACCT
Left flanking sequence: Indices 51238 -- 51737
CTCGTCGATCCACTTGTCGGAGACCACTGCGGTTGGCTCAGACAAACCAGAGCCAAGCTCAGGCT
TAGCTCTGTCACCAAGCAGAGTCGCAGCGACCGGCTCAGTGGACCGTTCGAAACCAGCGTCGTCA
GGCCCCAGGATCGTGGGCTCGATGTTGGCCACGTCCTCTTCCGAGGCCTTGGGAGCGATCTCGGG
AGCGGTGGGGGCGTCCGCCCAGTTGCGCTTGATCAGGCGCTCGCGCATCACCTCCGGCGGAGGCG
TGGTGAACTCCTCGTCGTTGTCCAGGTCGTCGATCTCGGGCTCCACCATGCCGTACTCCTGGTTG
GAGGTCAAGCCCGTGGGGTGAGACTCGAAGCCCGAGCCGAGAGTAGGGGTGGTGAACGCGTCCTT
GGACACCTCGTCGCGGGCCTTGGGCAAGGGAGCCGCCTCGGTGGCAATTGCTTCAGAGCCCTGTT
CACCCTGACCACCCAGCTGAGTATCCAACTGAGCACCCAGCTGAC
Right flanking sequence: Indices 51793 -- 52292
TTGGTCGGTCTTGAGATCACCCACATTGGCAGTGACATCCTTCTCAGCCAAACGGTTGCTGACCT
CACCCTTCTCACCCAGGCGGTCAACACCAACCTCTCCCTTGTCCTTCGCCAACGCCAGCCCCCCC
ACGGCTCCGGCAATCGCCAGCGCCGTGCCCACGCCCCACTTGTGCGGGTCGGACAGCGGCTCGGG
CAACTCCGCCAGCGTGGGCAACCCCTTGACCGCGGTGGTCAGGAGCGCGTCCTCGGGCACCGCCA
GCGGGTTGGGAACCACCAAACCGGGGCCCTCGTCCGTCTTGGGAGCCACCCGCGCCATCTCGGGA
CTCAGCGGCGCAGACTTGCGCAACACCAGGTTCCGCGGCGACATCGGGTCGAGCGAGTGGTAGTC
GCCCTCGGGAATCACCGGTGGCGCCTCCGAAGCCTCCAACGGCTCCGCCTGCTTCGCGGTCTCCT
CAAACTGCGAGCTGCGCCCGTCGGTGTGCACCACCTGCACCGGCA
Found at i:53416 original size:63 final size:63
Alignment explanation
Indices: 53348--53502 Score: 179
Period size: 63 Copynumber: 2.5 Consensus size: 63
53338 GAGCTCCAGC
* * * * *
53348 GGGTCCTCGACGGGCTGGAGATAGGCGTCAGCCACCGCAGACTCCTTGTTGGCGACCTCCTGG
1 GGGTCCTCGACGGGCTCGAGATAGGCGTCAGCCACAGCAGACTCCTTGTTCGCAACCTCCTCG
* * * * *
53411 GGGTCCTTC-ACCGGCTCGAGATAGGCATCTGCCACAGCGGACTCCTTGTTCGCAATCTCCTCG
1 GGGTCC-TCGACGGGCTCGAGATAGGCGTCAGCCACAGCAGACTCCTTGTTCGCAACCTCCTCG
*
53474 GGGTCCTTGACGGGCTCGAGGA-AGGCGTC
1 GGGTCCTCGACGGGCTCGA-GATAGGCGTC
53503 GGCGATGCCC
Statistics
Matches: 76, Mismatches: 13, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
62 1 0.01
63 71 0.93
64 4 0.05
ACGTcount: A:0.15, C:0.32, G:0.33, T:0.21
Consensus pattern (63 bp):
GGGTCCTCGACGGGCTCGAGATAGGCGTCAGCCACAGCAGACTCCTTGTTCGCAACCTCCTCG
Left flanking sequence: Indices 52848 -- 53347
CGTGTGCGGGCGTGGTCTTGGTTTCCTTGACCGCCACCACCGCGGGGTCCTGGGCCGGCTTGTGC
TCGTGGCCCATCCCGTGGTGGATGCCGGCCACCGCAGCTGCAGCGGCCGCGGCTCCAGCAGCCAC
GCCAGCGCCCGCGGCGCCTACACCGTCCGAAGACAGAACAGCCGGCTCCACAGACTTCTTGGGCT
CGTCTACTAAAGGCTTCTTTGGCTCGTCCACGGTTTTGGTGGCCTTATCCACGGCCACCGGGACA
GGCTCCTCGAAGCGGTCGACCGCCGCAGACTCGCGCTTGGCCAACGCCTCGGGGTCCTCCACGGG
CTCCAAGTAGGCGTCGGCCGCCTTCTCCTCGCGGTACGCCACCGCGTCCGGGTCCTCGACAGGCG
CCAAGTACGCGTCCGCCACCGCCGCCTCCTTGCTGGCCACGACCTGGGGGCTCTGCACGGGCTGG
TCGTAGCGGTCGACGGCCTCGAGCTCCTTCTCCCGGAGCTCCAGC
Right flanking sequence: Indices 53503 -- 54002
GGCGATGCCCGACTCCTTGTCGCGGATCTCCTGCGGGTCCTTGACGGGCTCCTCGTACTTGTCCA
CCATCTTCTCGAGCTTGCCCTTGATGCCCAGGTACTCCTTGTCCAGGGGGTCGTGAGACACCAGC
GACGCTTGTGTGTCCTTGTGGGACAACAGAGACGCCTGAGTATCCTTGTGAGACACCAGAGACTG
TGCGTCCCTCACCTGAGCCTCACCAGGCACGGCAGCTCCACCCAACGGAGCCGCGGCCTCTAAGT
TGGCGGGAGCCCCAAGCGACGCAGGGTCCGCGTGGAGCTGCTCGGCCTCGTGTGCCGTGAGCGGG
TGCCCGTTGAACGGAGGCGACACCGGGCCGTGGGCCGAGCCCACCAGCGACTTGCGCCGCAACTG
CTCGTTCTCGCGTGCCGACAACCGGTGGCCGTTGAACGGCTCCGACACCAGCGGGTGGGCGAGGA
CGCCAGCGGTGGCCGCGGCTCCTGCGCCCGCAGCGCCTGCGCCAG
Found at i:53667 original size:30 final size:30
Alignment explanation
Indices: 53620--53695 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 30
53610 CCAGGGGGTC
* * * *
53620 GTGAGACACCAGCGACGCTTGTGTGTCCTT
1 GTGAGACACCAGAGACGCCTGAGTATCCTT
* *
53650 GTGGGACAACAGAGACGCCTGAGTATCCTT
1 GTGAGACACCAGAGACGCCTGAGTATCCTT
53680 GTGAGACACCAGAGAC
1 GTGAGACACCAGAGAC
53696 TGTGCGTCCC
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.25, C:0.25, G:0.30, T:0.20
Consensus pattern (30 bp):
GTGAGACACCAGAGACGCCTGAGTATCCTT
Left flanking sequence: Indices 53120 -- 53619
CGGTCGACCGCCGCAGACTCGCGCTTGGCCAACGCCTCGGGGTCCTCCACGGGCTCCAAGTAGGC
GTCGGCCGCCTTCTCCTCGCGGTACGCCACCGCGTCCGGGTCCTCGACAGGCGCCAAGTACGCGT
CCGCCACCGCCGCCTCCTTGCTGGCCACGACCTGGGGGCTCTGCACGGGCTGGTCGTAGCGGTCG
ACGGCCTCGAGCTCCTTCTCCCGGAGCTCCAGCGGGTCCTCGACGGGCTGGAGATAGGCGTCAGC
CACCGCAGACTCCTTGTTGGCGACCTCCTGGGGGTCCTTCACCGGCTCGAGATAGGCATCTGCCA
CAGCGGACTCCTTGTTCGCAATCTCCTCGGGGTCCTTGACGGGCTCGAGGAAGGCGTCGGCGATG
CCCGACTCCTTGTCGCGGATCTCCTGCGGGTCCTTGACGGGCTCCTCGTACTTGTCCACCATCTT
CTCGAGCTTGCCCTTGATGCCCAGGTACTCCTTGTCCAGGGGGTC
Right flanking sequence: Indices 53696 -- 54195
TGTGCGTCCCTCACCTGAGCCTCACCAGGCACGGCAGCTCCACCCAACGGAGCCGCGGCCTCTAA
GTTGGCGGGAGCCCCAAGCGACGCAGGGTCCGCGTGGAGCTGCTCGGCCTCGTGTGCCGTGAGCG
GGTGCCCGTTGAACGGAGGCGACACCGGGCCGTGGGCCGAGCCCACCAGCGACTTGCGCCGCAAC
TGCTCGTTCTCGCGTGCCGACAACCGGTGGCCGTTGAACGGCTCCGACACCAGCGGGTGGGCGAG
GACGCCAGCGGTGGCCGCGGCTCCTGCGCCCGCAGCGCCTGCGCCAGCCACCGCGGCCGCACCCA
GGTGATGCTTGTGCACGGGCTGGGGCAGTCTTGGCAGTTTCAGCGGTTGCTTCGGGCTGCGGTGG
CTGTGGTTCATGGCCGCGGCCTCCTCGGCCGAGAGGCGGTGGCCGTTGAAGGGCTCCAGGATGGA
GCGCGGGCTGAGCTCGGCCAGGGGCGCAGACGGCGATGGGGTAGA
Found at i:54333 original size:24 final size:24
Alignment explanation
Indices: 54299--54366 Score: 84
Period size: 24 Copynumber: 2.8 Consensus size: 24
54289 AGCAATCACT
*
54299 GGAACAGTCTCAGACCGTCCAACC
1 GGAACAGTCTCAGACCGACCAACC
* *
54323 GGAACATTCTC-GGCTCGACCAACC
1 GGAACAGTCTCAGAC-CGACCAACC
*
54347 GGGACAGTCTCAGACCGACC
1 GGAACAGTCTCAGACCGACC
54367 GATCTCAGAC
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
23 2 0.06
24 32 0.89
25 2 0.06
ACGTcount: A:0.26, C:0.37, G:0.24, T:0.13
Consensus pattern (24 bp):
GGAACAGTCTCAGACCGACCAACC
Left flanking sequence: Indices 53799 -- 54298
GCTGCTCGGCCTCGTGTGCCGTGAGCGGGTGCCCGTTGAACGGAGGCGACACCGGGCCGTGGGCC
GAGCCCACCAGCGACTTGCGCCGCAACTGCTCGTTCTCGCGTGCCGACAACCGGTGGCCGTTGAA
CGGCTCCGACACCAGCGGGTGGGCGAGGACGCCAGCGGTGGCCGCGGCTCCTGCGCCCGCAGCGC
CTGCGCCAGCCACCGCGGCCGCACCCAGGTGATGCTTGTGCACGGGCTGGGGCAGTCTTGGCAGT
TTCAGCGGTTGCTTCGGGCTGCGGTGGCTGTGGTTCATGGCCGCGGCCTCCTCGGCCGAGAGGCG
GTGGCCGTTGAAGGGCTCCAGGATGGAGCGCGGGCTGAGCTCGGCCAGGGGCGCAGACGGCGATG
GGGTAGACGGAGTAGCCTGGGAAGACAAAGGCTGGTTCAAGTCTGCAGACTTGGCGTGAGAAGTG
GTGTCTTGAGCAGTCTCTGGCTGGGTGGAGGTCTCAGCAATCACT
Right flanking sequence: Indices 54367 -- 54866
GATCTCAGACTCACCGTACGGAACCAGACCCTGGAAGGCAGGGATCTCGGGCTTCGCCTGGCCAT
GAACCTCGGAAGTCTCCGGAACAGCCTTCTGGCCCAACTCGGACGCCTCCTCCTGACCCAACTCG
GATGCCTTCTTCTGACCACCCAACGGCACCACCACGGGCACCACCACGGGCACCACCGGCTCGTC
GTGCTGCGGCGGCTCGGCGCCCGCCACAAAGCTCGTGGACGGCACCGACACGTTGCGCTCGGGCT
CCGACACCGGCTCGGGCTCCACCAGCTCCTTGACGGTGGTGGCGAGCGGCGCAAGCTCCTCCTCG
ACGGGGTCCTCGGCGATGACGTCAGTCACCACCTCCGACACGCTCAGCCCGGGGGTCACCGCAGA
AGGCGTGCGGAGATGCGAGCCCGCCATGCCAGCGCCAGCGCCTAGGGCTGCTCCCGCGGCGGCTC
CGGCGAGCGTGGGCGCCAACAGGTCGTACTGTGCGGGCTGGGCCG
Found at i:54491 original size:24 final size:24
Alignment explanation
Indices: 54464--54513 Score: 73
Period size: 24 Copynumber: 2.1 Consensus size: 24
54454 AGCCTTCTGG
54464 CCCAACTCGGACGCCTCCTCCTGA
1 CCCAACTCGGACGCCTCCTCCTGA
* * *
54488 CCCAACTCGGATGCCTTCTTCTGA
1 CCCAACTCGGACGCCTCCTCCTGA
54512 CC
1 CC
54514 ACCCAACGGC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.16, C:0.46, G:0.16, T:0.22
Consensus pattern (24 bp):
CCCAACTCGGACGCCTCCTCCTGA
Left flanking sequence: Indices 53964 -- 54463
CGGTGGCCGCGGCTCCTGCGCCCGCAGCGCCTGCGCCAGCCACCGCGGCCGCACCCAGGTGATGC
TTGTGCACGGGCTGGGGCAGTCTTGGCAGTTTCAGCGGTTGCTTCGGGCTGCGGTGGCTGTGGTT
CATGGCCGCGGCCTCCTCGGCCGAGAGGCGGTGGCCGTTGAAGGGCTCCAGGATGGAGCGCGGGC
TGAGCTCGGCCAGGGGCGCAGACGGCGATGGGGTAGACGGAGTAGCCTGGGAAGACAAAGGCTGG
TTCAAGTCTGCAGACTTGGCGTGAGAAGTGGTGTCTTGAGCAGTCTCTGGCTGGGTGGAGGTCTC
AGCAATCACTGGAACAGTCTCAGACCGTCCAACCGGAACATTCTCGGCTCGACCAACCGGGACAG
TCTCAGACCGACCGATCTCAGACTCACCGTACGGAACCAGACCCTGGAAGGCAGGGATCTCGGGC
TTCGCCTGGCCATGAACCTCGGAAGTCTCCGGAACAGCCTTCTGG
Right flanking sequence: Indices 54514 -- 55013
ACCCAACGGCACCACCACGGGCACCACCACGGGCACCACCGGCTCGTCGTGCTGCGGCGGCTCGG
CGCCCGCCACAAAGCTCGTGGACGGCACCGACACGTTGCGCTCGGGCTCCGACACCGGCTCGGGC
TCCACCAGCTCCTTGACGGTGGTGGCGAGCGGCGCAAGCTCCTCCTCGACGGGGTCCTCGGCGAT
GACGTCAGTCACCACCTCCGACACGCTCAGCCCGGGGGTCACCGCAGAAGGCGTGCGGAGATGCG
AGCCCGCCATGCCAGCGCCAGCGCCTAGGGCTGCTCCCGCGGCGGCTCCGGCGAGCGTGGGCGCC
AACAGGTCGTACTGTGCGGGCTGGGCCGGTGGGTTGAGATTGGTAGGGCCTGCCTGGATGGGCTC
GTCAAGGGGCTCCTTGGCGATCGGGTCAACAGACTCGGACTCCTTGGCAATCGGGTCAACAGACT
CGGACTGCTCGACGATCGCGGGCTGCGACGGGCTGGCGACGTTGC
Found at i:54538 original size:12 final size:12
Alignment explanation
Indices: 54521--54553 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
54511 ACCACCCAAC
54521 GGCACCACCACG
1 GGCACCACCACG
54533 GGCACCACCACG
1 GGCACCACCACG
54545 GGCACCACC
1 GGCACCACC
54554 GGCTCGTCGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.24, C:0.52, G:0.24, T:0.00
Consensus pattern (12 bp):
GGCACCACCACG
Left flanking sequence: Indices 54021 -- 54520
GGTGATGCTTGTGCACGGGCTGGGGCAGTCTTGGCAGTTTCAGCGGTTGCTTCGGGCTGCGGTGG
CTGTGGTTCATGGCCGCGGCCTCCTCGGCCGAGAGGCGGTGGCCGTTGAAGGGCTCCAGGATGGA
GCGCGGGCTGAGCTCGGCCAGGGGCGCAGACGGCGATGGGGTAGACGGAGTAGCCTGGGAAGACA
AAGGCTGGTTCAAGTCTGCAGACTTGGCGTGAGAAGTGGTGTCTTGAGCAGTCTCTGGCTGGGTG
GAGGTCTCAGCAATCACTGGAACAGTCTCAGACCGTCCAACCGGAACATTCTCGGCTCGACCAAC
CGGGACAGTCTCAGACCGACCGATCTCAGACTCACCGTACGGAACCAGACCCTGGAAGGCAGGGA
TCTCGGGCTTCGCCTGGCCATGAACCTCGGAAGTCTCCGGAACAGCCTTCTGGCCCAACTCGGAC
GCCTCCTCCTGACCCAACTCGGATGCCTTCTTCTGACCACCCAAC
Right flanking sequence: Indices 54554 -- 55053
GGCTCGTCGTGCTGCGGCGGCTCGGCGCCCGCCACAAAGCTCGTGGACGGCACCGACACGTTGCG
CTCGGGCTCCGACACCGGCTCGGGCTCCACCAGCTCCTTGACGGTGGTGGCGAGCGGCGCAAGCT
CCTCCTCGACGGGGTCCTCGGCGATGACGTCAGTCACCACCTCCGACACGCTCAGCCCGGGGGTC
ACCGCAGAAGGCGTGCGGAGATGCGAGCCCGCCATGCCAGCGCCAGCGCCTAGGGCTGCTCCCGC
GGCGGCTCCGGCGAGCGTGGGCGCCAACAGGTCGTACTGTGCGGGCTGGGCCGGTGGGTTGAGAT
TGGTAGGGCCTGCCTGGATGGGCTCGTCAAGGGGCTCCTTGGCGATCGGGTCAACAGACTCGGAC
TCCTTGGCAATCGGGTCAACAGACTCGGACTGCTCGACGATCGCGGGCTGCGACGGGCTGGCGAC
GTTGCGGGAGCCCAAGTGGTGCGAGGGGGTCTCAATAGGCCCAGC
Found at i:54949 original size:30 final size:30
Alignment explanation
Indices: 54913--54974 Score: 115
Period size: 30 Copynumber: 2.1 Consensus size: 30
54903 CGTCAAGGGG
*
54913 CTCCTTGGCGATCGGGTCAACAGACTCGGA
1 CTCCTTGGCAATCGGGTCAACAGACTCGGA
54943 CTCCTTGGCAATCGGGTCAACAGACTCGGA
1 CTCCTTGGCAATCGGGTCAACAGACTCGGA
54973 CT
1 CT
54975 GCTCGACGAT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.21, C:0.31, G:0.27, T:0.21
Consensus pattern (30 bp):
CTCCTTGGCAATCGGGTCAACAGACTCGGA
Left flanking sequence: Indices 54413 -- 54912
TCGGGCTTCGCCTGGCCATGAACCTCGGAAGTCTCCGGAACAGCCTTCTGGCCCAACTCGGACGC
CTCCTCCTGACCCAACTCGGATGCCTTCTTCTGACCACCCAACGGCACCACCACGGGCACCACCA
CGGGCACCACCGGCTCGTCGTGCTGCGGCGGCTCGGCGCCCGCCACAAAGCTCGTGGACGGCACC
GACACGTTGCGCTCGGGCTCCGACACCGGCTCGGGCTCCACCAGCTCCTTGACGGTGGTGGCGAG
CGGCGCAAGCTCCTCCTCGACGGGGTCCTCGGCGATGACGTCAGTCACCACCTCCGACACGCTCA
GCCCGGGGGTCACCGCAGAAGGCGTGCGGAGATGCGAGCCCGCCATGCCAGCGCCAGCGCCTAGG
GCTGCTCCCGCGGCGGCTCCGGCGAGCGTGGGCGCCAACAGGTCGTACTGTGCGGGCTGGGCCGG
TGGGTTGAGATTGGTAGGGCCTGCCTGGATGGGCTCGTCAAGGGG
Right flanking sequence: Indices 54975 -- 55474
GCTCGACGATCGCGGGCTGCGACGGGCTGGCGACGTTGCGGGAGCCCAAGTGGTGCGAGGGGGTC
TCAATAGGCCCAGCAAGGGGCGAAGGAACGGGCTTGCGGGTGGGCTGGGAAGCGGGCTGAGCCGA
GCCAGGCTCGCCAGCATCCAGAGAATGAGGGTAGGCCTGAGATTGCTCAGCCTCGTGGCTGTGGC
CAAGCTGGTGGCCATCCGTAGACTGACCATAGGCCTGAGACTGACCAGCCACGTTGCTGTGAACA
CCAGCTTCTTGGCCATATCCAACACCACCCTCGTGGCCATGGCTCGGGCCAACACCCTCCTGTCC
GTGGCTCTGTCCATGGCTCTGAACACCACTCTCCAGTCCGTAGCTCTGTCCATGGCTCTGACCAC
CCTCCAGTCCACGACTCTGGCCCTGGCCTCCCACCGGCGACTCAAACTTCTCAAACATCTTGTTC
CCGCTCCGCTTCAACTTGTCCTTGAACCCCAGCTTCTGCTGCGGC
Found at i:55314 original size:39 final size:39
Alignment explanation
Indices: 55271--55374 Score: 115
Period size: 39 Copynumber: 2.7 Consensus size: 39
55261 ACCCTCGTGG
** * *
55271 CCATGGCTCGGGCCAACACCCTCCTGTCCGTGGCTCTGT
1 CCATGGCTCGGAACAACACCCTCCAGTCCGTAGCTCTGT
* * *
55310 CCATGGCTCTGAACACCACTCTCCAGTCCGTAGCTCTGT
1 CCATGGCTCGGAACAACACCCTCCAGTCCGTAGCTCTGT
*
55349 CCATGGCTCTG-AC--CACCCTCCAGTCC
1 CCATGGCTCGGAACAACACCCTCCAGTCC
55375 ACGACTCTGG
Statistics
Matches: 57, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
36 12 0.21
38 2 0.04
39 43 0.75
ACGTcount: A:0.14, C:0.42, G:0.20, T:0.23
Consensus pattern (39 bp):
CCATGGCTCGGAACAACACCCTCCAGTCCGTAGCTCTGT
Left flanking sequence: Indices 54771 -- 55270
GCGAGCCCGCCATGCCAGCGCCAGCGCCTAGGGCTGCTCCCGCGGCGGCTCCGGCGAGCGTGGGC
GCCAACAGGTCGTACTGTGCGGGCTGGGCCGGTGGGTTGAGATTGGTAGGGCCTGCCTGGATGGG
CTCGTCAAGGGGCTCCTTGGCGATCGGGTCAACAGACTCGGACTCCTTGGCAATCGGGTCAACAG
ACTCGGACTGCTCGACGATCGCGGGCTGCGACGGGCTGGCGACGTTGCGGGAGCCCAAGTGGTGC
GAGGGGGTCTCAATAGGCCCAGCAAGGGGCGAAGGAACGGGCTTGCGGGTGGGCTGGGAAGCGGG
CTGAGCCGAGCCAGGCTCGCCAGCATCCAGAGAATGAGGGTAGGCCTGAGATTGCTCAGCCTCGT
GGCTGTGGCCAAGCTGGTGGCCATCCGTAGACTGACCATAGGCCTGAGACTGACCAGCCACGTTG
CTGTGAACACCAGCTTCTTGGCCATATCCAACACCACCCTCGTGG
Right flanking sequence: Indices 55375 -- 55874
ACGACTCTGGCCCTGGCCTCCCACCGGCGACTCAAACTTCTCAAACATCTTGTTCCCGCTCCGCT
TCAACTTGTCCTTGAACCCCAGCTTCTGCTGCGGCAGCGGCAACGCGTGCGAGTCCGCGGGCGGC
GGCAGCAGGTGGTGGGCCCGCAGCGGGTACGTCTCGGTGAACAGCGTGCGCGAGTCCTCGGGCTC
CACCGGCGCCGCGGGCTCCAACTGCTGCTGGTGCTGCTGGTGCTGCACCAGCTTGCGCCGCCCAA
ACAACCCGAACTTGCGCTTCTTGGGCTCGTCGTCGTCGCTGGAGTAGCGTCGCTCGCGCTTGGCC
TCCTTTTCTTCTTGCCTGGCGGCCTTCTCCTCCTGGCGGGCGGCCTTTTCCTCCTGCTTGGCCGC
CTTTTCCTCGGCCCGCCGCTGCTTCTTCTCGTCCTTCTTCAGCGGCACTCCGTCGCGCAACAGCA
TCCCCACGAACCCGCGGTGGTGGTTCTCGTAGTTGTAGTTGGGCT
Found at i:55383 original size:36 final size:37
Alignment explanation
Indices: 55287--55374 Score: 124
Period size: 39 Copynumber: 2.4 Consensus size: 37
55277 CTCGGGCCAA
* *
55287 CACCCTCCTGTCCGTGGCTCTGTCCATGGCTCTGAACAC
1 CACCCTCCAGTCCGTAGCTCTGTCCATGGCTCTG-A-AC
*
55326 CACTCTCCAGTCCGTAGCTCTGTCCATGGCTCTG-AC
1 CACCCTCCAGTCCGTAGCTCTGTCCATGGCTCTGAAC
55362 CACCCTCCAGTCC
1 CACCCTCCAGTCC
55375 ACGACTCTGG
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
36 14 0.31
39 31 0.69
ACGTcount: A:0.14, C:0.43, G:0.18, T:0.25
Consensus pattern (37 bp):
CACCCTCCAGTCCGTAGCTCTGTCCATGGCTCTGAAC
Left flanking sequence: Indices 54787 -- 55286
AGCGCCAGCGCCTAGGGCTGCTCCCGCGGCGGCTCCGGCGAGCGTGGGCGCCAACAGGTCGTACT
GTGCGGGCTGGGCCGGTGGGTTGAGATTGGTAGGGCCTGCCTGGATGGGCTCGTCAAGGGGCTCC
TTGGCGATCGGGTCAACAGACTCGGACTCCTTGGCAATCGGGTCAACAGACTCGGACTGCTCGAC
GATCGCGGGCTGCGACGGGCTGGCGACGTTGCGGGAGCCCAAGTGGTGCGAGGGGGTCTCAATAG
GCCCAGCAAGGGGCGAAGGAACGGGCTTGCGGGTGGGCTGGGAAGCGGGCTGAGCCGAGCCAGGC
TCGCCAGCATCCAGAGAATGAGGGTAGGCCTGAGATTGCTCAGCCTCGTGGCTGTGGCCAAGCTG
GTGGCCATCCGTAGACTGACCATAGGCCTGAGACTGACCAGCCACGTTGCTGTGAACACCAGCTT
CTTGGCCATATCCAACACCACCCTCGTGGCCATGGCTCGGGCCAA
Right flanking sequence: Indices 55375 -- 55874
ACGACTCTGGCCCTGGCCTCCCACCGGCGACTCAAACTTCTCAAACATCTTGTTCCCGCTCCGCT
TCAACTTGTCCTTGAACCCCAGCTTCTGCTGCGGCAGCGGCAACGCGTGCGAGTCCGCGGGCGGC
GGCAGCAGGTGGTGGGCCCGCAGCGGGTACGTCTCGGTGAACAGCGTGCGCGAGTCCTCGGGCTC
CACCGGCGCCGCGGGCTCCAACTGCTGCTGGTGCTGCTGGTGCTGCACCAGCTTGCGCCGCCCAA
ACAACCCGAACTTGCGCTTCTTGGGCTCGTCGTCGTCGCTGGAGTAGCGTCGCTCGCGCTTGGCC
TCCTTTTCTTCTTGCCTGGCGGCCTTCTCCTCCTGGCGGGCGGCCTTTTCCTCCTGCTTGGCCGC
CTTTTCCTCGGCCCGCCGCTGCTTCTTCTCGTCCTTCTTCAGCGGCACTCCGTCGCGCAACAGCA
TCCCCACGAACCCGCGGTGGTGGTTCTCGTAGTTGTAGTTGGGCT
Found at i:55725 original size:21 final size:21
Alignment explanation
Indices: 55701--55773 Score: 83
Period size: 21 Copynumber: 3.5 Consensus size: 21
55691 CGCTTGGCCT
* *
55701 CCTTTTCTTCTTGCCTGGCGG
1 CCTTTTCCTCCTGCCTGGCGG
* * *
55722 CCTTCTCCTCCTGGCGGGCGG
1 CCTTTTCCTCCTGCCTGGCGG
* *
55743 CCTTTTCCTCCTGCTTGGCCG
1 CCTTTTCCTCCTGCCTGGCGG
55764 CCTTTTCCTC
1 CCTTTTCCTC
55774 GGCCCGCCGC
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.00, C:0.41, G:0.22, T:0.37
Consensus pattern (21 bp):
CCTTTTCCTCCTGCCTGGCGG
Left flanking sequence: Indices 55201 -- 55700
GGCCTGAGACTGACCAGCCACGTTGCTGTGAACACCAGCTTCTTGGCCATATCCAACACCACCCT
CGTGGCCATGGCTCGGGCCAACACCCTCCTGTCCGTGGCTCTGTCCATGGCTCTGAACACCACTC
TCCAGTCCGTAGCTCTGTCCATGGCTCTGACCACCCTCCAGTCCACGACTCTGGCCCTGGCCTCC
CACCGGCGACTCAAACTTCTCAAACATCTTGTTCCCGCTCCGCTTCAACTTGTCCTTGAACCCCA
GCTTCTGCTGCGGCAGCGGCAACGCGTGCGAGTCCGCGGGCGGCGGCAGCAGGTGGTGGGCCCGC
AGCGGGTACGTCTCGGTGAACAGCGTGCGCGAGTCCTCGGGCTCCACCGGCGCCGCGGGCTCCAA
CTGCTGCTGGTGCTGCTGGTGCTGCACCAGCTTGCGCCGCCCAAACAACCCGAACTTGCGCTTCT
TGGGCTCGTCGTCGTCGCTGGAGTAGCGTCGCTCGCGCTTGGCCT
Right flanking sequence: Indices 55774 -- 56273
GGCCCGCCGCTGCTTCTTCTCGTCCTTCTTCAGCGGCACTCCGTCGCGCAACAGCATCCCCACGA
ACCCGCGGTGGTGGTTCTCGTAGTTGTAGTTGGGCTGCACGCCCTCGTCCTGGGCGGCCATCGCC
GCGGCCGTCACGGGACCCACGCTGGGCTTGGCGCTGAACGGCTTGGCAAACACCTTGGGCAGCGT
CTGCGGCGGCAGCTCGGGCGGAGCCACCACAGCGCCCACCTCGCGGTCGCCGTACACCTTCTTGT
GCGCAGCCTCGAGCGCGGCCGCGTAGAAGTCCGCCAGAGGCACCAGCAGCAGCGCCGTGGGCAAC
CCCTCCTTGTTGGTGCCTCGCTTGGGCGCCGGAGGCATCGCGGTGTGCGGCCCGGGCAGCAGCAC
CCGCGGCTTCGGGGTGTCGTCGTAGTAGTGGCGGGTCTCCACCATGTTGTTGAACTTGATCAGCC
CGGGCGGCAGCGCCAACGCCTCCAGCTGGGACGGCAGCGGCATGT
Found at i:57325 original size:13 final size:12
Alignment explanation
Indices: 57304--57388 Score: 66
Period size: 13 Copynumber: 7.0 Consensus size: 12
57294 TTAAGTGGTT
57304 GGAAGTGGGTGGG
1 GGAAGTGGGT-GG
*
57317 GGAAATGGGTGG
1 GGAAGTGGGTGG
* *
57329 GGANGT-GGT-T
1 GGAAGTGGGTGG
57339 GGAAGTGGGTGGG
1 GGAAGTGGGT-GG
*
57352 GGAAATGGGTGG
1 GGAAGTGGGTGG
*
57364 GGAAGTAGGTAGG
1 GGAAGTGGGT-GG
* *
57377 GTAAATGGGTGG
1 GGAAGTGGGTGG
57389 TTTGAGCGGT
Statistics
Matches: 56, Mismatches: 12, Indels: 9
0.73 0.16 0.12
Matches are distributed among these distances:
10 5 0.09
11 6 0.11
12 18 0.32
13 27 0.48
ACGTcount: A:0.21, C:0.00, G:0.59, T:0.19
Consensus pattern (12 bp):
GGAAGTGGGTGG
Left flanking sequence: Indices 56804 -- 57303
GTGATCAGCTGGGTGCGTCCGGCCAGGTCCACCACCCGCGTGGTCTTGGTGGTGATGACCACGTC
GTCGTCGTCGTCGGCGTCATCGTTGACGATCTGGTCGATCAGGAGCCGGCGGGGCCCGGTCAAGC
TCAGGGCCCGGCGGGCAGGTTGCTGTGGCAGCAGCGGGCCCGTGTGGTACAGCGGTTTCGGGTTG
TACACGTACTTGCGGGGGGCGCCTGTCATCAGCATCAGCCGGCCGGCCGCGGGCTTGCGGGCCTG
GGGCTGTGGCGAGTTGCCCAGGTGCATCCGCATGGCGGCGGCGGCCGCGTTGCCTGCGCCGGCGG
CGGCGGTTTTCAGGATGAACGGGGCCAGCTGCTGCTGGCTCTGGTAGCGGTTGAGCTCGTCCTGG
TACTTGGCAAAGCCCTGGTAGTTGTTACTTCGCTGGAGGTTAGTATGGGAGGGGGTTGGGTGGGA
GGGGTGGGGGAGAGGTGGGGAACGGAGGAATGGGTTTAAGTGGTT
Right flanking sequence: Indices 57389 -- 57888
TTTGAGCGGTTTGAGTGGTGGTGGTTTGAGTGGTGGTGGTTTAAGTGGTGGTGGTGGTTTAGGTA
GTTTTGCAACAGGCTCTGTAGATCAGTCGTTGGTGGAATTGGTTGCTTGAGTGTGAGCTATCAAC
TAGTGTGCAATTGAAGTGCAATTGGTGTGCAACTTGTTTGAAAATGTTGTTGTACTACTAGTGTC
CAACTAGTGTGCAACTGATTTGCAATTGGTCTGTAACTGGTCTGCAACTGGTCTGCAACTGGTGT
GCTCATGATGTGATAGTGATGTATCCATTGCAACCAGTGTGTAACCAGTATGCAAATAGTGTGCT
ATCAGTTTGCAAACTGTGTGCAACCAGTGTGCAACCAGTGTGCAACCATCGTGCAACCATCGTGC
AACCATCGTGCAACCAGTGTGCAACCAGTGTGCAACCAGCAACCAGTGTGCAAAATTGTCCAATT
CATCAATCACAGCACTACCAGTATCTCTACCAGCATCTCTCCATC
Found at i:57337 original size:35 final size:34
Alignment explanation
Indices: 57297--57366 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 34
57287 AATGGGTTTA
57297 AGTGGTTGGAAGTGGGTGGGGGAAATGGGTGGGG
1 AGTGGTTGGAAGTGGGTGGGGGAAATGGGTGGGG
57331 ANGTGGTTGGAAGTGGGTGGGGGAAATGGGTGGGG
1 A-GTGGTTGGAAGTGGGTGGGGGAAATGGGTGGGG
57366 A
1 A
57367 AGTAGGTAGG
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 1 0.03
35 34 0.97
ACGTcount: A:0.19, C:0.00, G:0.60, T:0.20
Consensus pattern (34 bp):
AGTGGTTGGAAGTGGGTGGGGGAAATGGGTGGGG
Left flanking sequence: Indices 56797 -- 57296
CTTGGTGGTGATCAGCTGGGTGCGTCCGGCCAGGTCCACCACCCGCGTGGTCTTGGTGGTGATGA
CCACGTCGTCGTCGTCGTCGGCGTCATCGTTGACGATCTGGTCGATCAGGAGCCGGCGGGGCCCG
GTCAAGCTCAGGGCCCGGCGGGCAGGTTGCTGTGGCAGCAGCGGGCCCGTGTGGTACAGCGGTTT
CGGGTTGTACACGTACTTGCGGGGGGCGCCTGTCATCAGCATCAGCCGGCCGGCCGCGGGCTTGC
GGGCCTGGGGCTGTGGCGAGTTGCCCAGGTGCATCCGCATGGCGGCGGCGGCCGCGTTGCCTGCG
CCGGCGGCGGCGGTTTTCAGGATGAACGGGGCCAGCTGCTGCTGGCTCTGGTAGCGGTTGAGCTC
GTCCTGGTACTTGGCAAAGCCCTGGTAGTTGTTACTTCGCTGGAGGTTAGTATGGGAGGGGGTTG
GGTGGGAGGGGTGGGGGAGAGGTGGGGAACGGAGGAATGGGTTTA
Right flanking sequence: Indices 57367 -- 57866
AGTAGGTAGGGTAAATGGGTGGTTTGAGCGGTTTGAGTGGTGGTGGTTTGAGTGGTGGTGGTTTA
AGTGGTGGTGGTGGTTTAGGTAGTTTTGCAACAGGCTCTGTAGATCAGTCGTTGGTGGAATTGGT
TGCTTGAGTGTGAGCTATCAACTAGTGTGCAATTGAAGTGCAATTGGTGTGCAACTTGTTTGAAA
ATGTTGTTGTACTACTAGTGTCCAACTAGTGTGCAACTGATTTGCAATTGGTCTGTAACTGGTCT
GCAACTGGTCTGCAACTGGTGTGCTCATGATGTGATAGTGATGTATCCATTGCAACCAGTGTGTA
ACCAGTATGCAAATAGTGTGCTATCAGTTTGCAAACTGTGTGCAACCAGTGTGCAACCAGTGTGC
AACCATCGTGCAACCATCGTGCAACCATCGTGCAACCAGTGTGCAACCAGTGTGCAACCAGCAAC
CAGTGTGCAAAATTGTCCAATTCATCAATCACAGCACTACCAGTA
Found at i:57382 original size:25 final size:25
Alignment explanation
Indices: 57339--57388 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
57329 GGANGTGGTT
* *
57339 GGAAGTGGGTGGGGGAAATGGGTGG
1 GGAAGTAGGTAGGGGAAATGGGTGG
*
57364 GGAAGTAGGTAGGGTAAATGGGTGG
1 GGAAGTAGGTAGGGGAAATGGGTGG
57389 TTTGAGCGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.24, C:0.00, G:0.58, T:0.18
Consensus pattern (25 bp):
GGAAGTAGGTAGGGGAAATGGGTGG
Left flanking sequence: Indices 56839 -- 57338
CCGCGTGGTCTTGGTGGTGATGACCACGTCGTCGTCGTCGTCGGCGTCATCGTTGACGATCTGGT
CGATCAGGAGCCGGCGGGGCCCGGTCAAGCTCAGGGCCCGGCGGGCAGGTTGCTGTGGCAGCAGC
GGGCCCGTGTGGTACAGCGGTTTCGGGTTGTACACGTACTTGCGGGGGGCGCCTGTCATCAGCAT
CAGCCGGCCGGCCGCGGGCTTGCGGGCCTGGGGCTGTGGCGAGTTGCCCAGGTGCATCCGCATGG
CGGCGGCGGCCGCGTTGCCTGCGCCGGCGGCGGCGGTTTTCAGGATGAACGGGGCCAGCTGCTGC
TGGCTCTGGTAGCGGTTGAGCTCGTCCTGGTACTTGGCAAAGCCCTGGTAGTTGTTACTTCGCTG
GAGGTTAGTATGGGAGGGGGTTGGGTGGGAGGGGTGGGGGAGAGGTGGGGAACGGAGGAATGGGT
TTAAGTGGTTGGAAGTGGGTGGGGGAAATGGGTGGGGANGTGGTT
Right flanking sequence: Indices 57389 -- 57888
TTTGAGCGGTTTGAGTGGTGGTGGTTTGAGTGGTGGTGGTTTAAGTGGTGGTGGTGGTTTAGGTA
GTTTTGCAACAGGCTCTGTAGATCAGTCGTTGGTGGAATTGGTTGCTTGAGTGTGAGCTATCAAC
TAGTGTGCAATTGAAGTGCAATTGGTGTGCAACTTGTTTGAAAATGTTGTTGTACTACTAGTGTC
CAACTAGTGTGCAACTGATTTGCAATTGGTCTGTAACTGGTCTGCAACTGGTCTGCAACTGGTGT
GCTCATGATGTGATAGTGATGTATCCATTGCAACCAGTGTGTAACCAGTATGCAAATAGTGTGCT
ATCAGTTTGCAAACTGTGTGCAACCAGTGTGCAACCAGTGTGCAACCATCGTGCAACCATCGTGC
AACCATCGTGCAACCAGTGTGCAACCAGTGTGCAACCAGCAACCAGTGTGCAAAATTGTCCAATT
CATCAATCACAGCACTACCAGTATCTCTACCAGCATCTCTCCATC
Found at i:57416 original size:15 final size:15
Alignment explanation
Indices: 57396--57443 Score: 87
Period size: 15 Copynumber: 3.2 Consensus size: 15
57386 TGGTTTGAGC
57396 GGTTTGAGTGGTGGT
1 GGTTTGAGTGGTGGT
57411 GGTTTGAGTGGTGGT
1 GGTTTGAGTGGTGGT
*
57426 GGTTTAAGTGGTGGT
1 GGTTTGAGTGGTGGT
57441 GGT
1 GGT
57444 GGTTTAGGTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
15 32 1.00
ACGTcount: A:0.08, C:0.00, G:0.52, T:0.40
Consensus pattern (15 bp):
GGTTTGAGTGGTGGT
Left flanking sequence: Indices 56896 -- 57395
GATCTGGTCGATCAGGAGCCGGCGGGGCCCGGTCAAGCTCAGGGCCCGGCGGGCAGGTTGCTGTG
GCAGCAGCGGGCCCGTGTGGTACAGCGGTTTCGGGTTGTACACGTACTTGCGGGGGGCGCCTGTC
ATCAGCATCAGCCGGCCGGCCGCGGGCTTGCGGGCCTGGGGCTGTGGCGAGTTGCCCAGGTGCAT
CCGCATGGCGGCGGCGGCCGCGTTGCCTGCGCCGGCGGCGGCGGTTTTCAGGATGAACGGGGCCA
GCTGCTGCTGGCTCTGGTAGCGGTTGAGCTCGTCCTGGTACTTGGCAAAGCCCTGGTAGTTGTTA
CTTCGCTGGAGGTTAGTATGGGAGGGGGTTGGGTGGGAGGGGTGGGGGAGAGGTGGGGAACGGAG
GAATGGGTTTAAGTGGTTGGAAGTGGGTGGGGGAAATGGGTGGGGANGTGGTTGGAAGTGGGTGG
GGGAAATGGGTGGGGAAGTAGGTAGGGTAAATGGGTGGTTTGAGC
Right flanking sequence: Indices 57444 -- 57943
GGTTTAGGTAGTTTTGCAACAGGCTCTGTAGATCAGTCGTTGGTGGAATTGGTTGCTTGAGTGTG
AGCTATCAACTAGTGTGCAATTGAAGTGCAATTGGTGTGCAACTTGTTTGAAAATGTTGTTGTAC
TACTAGTGTCCAACTAGTGTGCAACTGATTTGCAATTGGTCTGTAACTGGTCTGCAACTGGTCTG
CAACTGGTGTGCTCATGATGTGATAGTGATGTATCCATTGCAACCAGTGTGTAACCAGTATGCAA
ATAGTGTGCTATCAGTTTGCAAACTGTGTGCAACCAGTGTGCAACCAGTGTGCAACCATCGTGCA
ACCATCGTGCAACCATCGTGCAACCAGTGTGCAACCAGTGTGCAACCAGCAACCAGTGTGCAAAA
TTGTCCAATTCATCAATCACAGCACTACCAGTATCTCTACCAGCATCTCTCCATCGCAACAATCC
TCACCGCGGCTGGGCTTCCGCACGTCACAGCCACCATGTCACTTT
Found at i:57624 original size:11 final size:11
Alignment explanation
Indices: 57593--57646 Score: 72
Period size: 11 Copynumber: 4.9 Consensus size: 11
57583 CCAACTAGTG
* *
57593 TGCAACTGATT
1 TGCAACTGGTC
*
57604 TGCAATTGGTC
1 TGCAACTGGTC
*
57615 TGTAACTGGTC
1 TGCAACTGGTC
57626 TGCAACTGGTC
1 TGCAACTGGTC
57637 TGCAACTGGT
1 TGCAACTGGT
57647 GTGCTCATGA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 37 1.00
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.33
Consensus pattern (11 bp):
TGCAACTGGTC
Left flanking sequence: Indices 57093 -- 57592
GCATGGCGGCGGCGGCCGCGTTGCCTGCGCCGGCGGCGGCGGTTTTCAGGATGAACGGGGCCAGC
TGCTGCTGGCTCTGGTAGCGGTTGAGCTCGTCCTGGTACTTGGCAAAGCCCTGGTAGTTGTTACT
TCGCTGGAGGTTAGTATGGGAGGGGGTTGGGTGGGAGGGGTGGGGGAGAGGTGGGGAACGGAGGA
ATGGGTTTAAGTGGTTGGAAGTGGGTGGGGGAAATGGGTGGGGANGTGGTTGGAAGTGGGTGGGG
GAAATGGGTGGGGAAGTAGGTAGGGTAAATGGGTGGTTTGAGCGGTTTGAGTGGTGGTGGTTTGA
GTGGTGGTGGTTTAAGTGGTGGTGGTGGTTTAGGTAGTTTTGCAACAGGCTCTGTAGATCAGTCG
TTGGTGGAATTGGTTGCTTGAGTGTGAGCTATCAACTAGTGTGCAATTGAAGTGCAATTGGTGTG
CAACTTGTTTGAAAATGTTGTTGTACTACTAGTGTCCAACTAGTG
Right flanking sequence: Indices 57647 -- 58146
GTGCTCATGATGTGATAGTGATGTATCCATTGCAACCAGTGTGTAACCAGTATGCAAATAGTGTG
CTATCAGTTTGCAAACTGTGTGCAACCAGTGTGCAACCAGTGTGCAACCATCGTGCAACCATCGT
GCAACCATCGTGCAACCAGTGTGCAACCAGTGTGCAACCAGCAACCAGTGTGCAAAATTGTCCAA
TTCATCAATCACAGCACTACCAGTATCTCTACCAGCATCTCTCCATCGCAACAATCCTCACCGCG
GCTGGGCTTCCGCACGTCACAGCCACCATGTCACTTTGCACAATCCATCCACGTTCCACCACGGC
ACTTGGCATCCCTTCGCCATTCCGTTCCGGTGGCCACATTCCTCGGATCCTCTCGGTACGCCTGC
GGCGTCCAGGGGTTACTTACCCGTCTCGACGACGAAAACAAATTGACCATGCTCGGTTGGCTAGC
GGAATAGGGTTTCTGGGGGGAAATACAATTAGGAGGCCGCTAAAC
Found at i:57629 original size:22 final size:22
Alignment explanation
Indices: 57584--57646 Score: 72
Period size: 22 Copynumber: 2.9 Consensus size: 22
57574 TACTAGTGTC
* * * *
57584 CAACTAGTGTGCAACTGATTTG
1 CAACTGGTCTGCAACTGGTCTG
* *
57606 CAATTGGTCTGTAACTGGTCTG
1 CAACTGGTCTGCAACTGGTCTG
57628 CAACTGGTCTGCAACTGGT
1 CAACTGGTCTGCAACTGGT
57647 GTGCTCATGA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (22 bp):
CAACTGGTCTGCAACTGGTCTG
Left flanking sequence: Indices 57084 -- 57583
GGTGCATCCGCATGGCGGCGGCGGCCGCGTTGCCTGCGCCGGCGGCGGCGGTTTTCAGGATGAAC
GGGGCCAGCTGCTGCTGGCTCTGGTAGCGGTTGAGCTCGTCCTGGTACTTGGCAAAGCCCTGGTA
GTTGTTACTTCGCTGGAGGTTAGTATGGGAGGGGGTTGGGTGGGAGGGGTGGGGGAGAGGTGGGG
AACGGAGGAATGGGTTTAAGTGGTTGGAAGTGGGTGGGGGAAATGGGTGGGGANGTGGTTGGAAG
TGGGTGGGGGAAATGGGTGGGGAAGTAGGTAGGGTAAATGGGTGGTTTGAGCGGTTTGAGTGGTG
GTGGTTTGAGTGGTGGTGGTTTAAGTGGTGGTGGTGGTTTAGGTAGTTTTGCAACAGGCTCTGTA
GATCAGTCGTTGGTGGAATTGGTTGCTTGAGTGTGAGCTATCAACTAGTGTGCAATTGAAGTGCA
ATTGGTGTGCAACTTGTTTGAAAATGTTGTTGTACTACTAGTGTC
Right flanking sequence: Indices 57647 -- 58146
GTGCTCATGATGTGATAGTGATGTATCCATTGCAACCAGTGTGTAACCAGTATGCAAATAGTGTG
CTATCAGTTTGCAAACTGTGTGCAACCAGTGTGCAACCAGTGTGCAACCATCGTGCAACCATCGT
GCAACCATCGTGCAACCAGTGTGCAACCAGTGTGCAACCAGCAACCAGTGTGCAAAATTGTCCAA
TTCATCAATCACAGCACTACCAGTATCTCTACCAGCATCTCTCCATCGCAACAATCCTCACCGCG
GCTGGGCTTCCGCACGTCACAGCCACCATGTCACTTTGCACAATCCATCCACGTTCCACCACGGC
ACTTGGCATCCCTTCGCCATTCCGTTCCGGTGGCCACATTCCTCGGATCCTCTCGGTACGCCTGC
GGCGTCCAGGGGTTACTTACCCGTCTCGACGACGAAAACAAATTGACCATGCTCGGTTGGCTAGC
GGAATAGGGTTTCTGGGGGGAAATACAATTAGGAGGCCGCTAAAC
Found at i:57831 original size:11 final size:11
Alignment explanation
Indices: 57677--57817 Score: 153
Period size: 11 Copynumber: 12.8 Consensus size: 11
57667 ATGTATCCAT
57677 TGCAACCAGTG
1 TGCAACCAGTG
* *
57688 TGTAACCAGTA
1 TGCAACCAGTG
**
57699 TGCAAATAGTG
1 TGCAACCAGTG
* * *
57710 TGCTATCAGTT
1 TGCAACCAGTG
* *
57721 TGCAAACTGTG
1 TGCAACCAGTG
57732 TGCAACCAGTG
1 TGCAACCAGTG
57743 TGCAACCAGTG
1 TGCAACCAGTG
57754 TGCAACCA-TCG
1 TGCAACCAGT-G
57765 TGCAACCA-TCG
1 TGCAACCAGT-G
57776 TGCAACCA-TCG
1 TGCAACCAGT-G
57787 TGCAACCAGTG
1 TGCAACCAGTG
57798 TGCAACCAGTG
1 TGCAACCAGTG
57809 TGCAACCAG
1 TGCAACCAG
57818 CAACCAGTGT
Statistics
Matches: 112, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
10 1 0.01
11 110 0.98
12 1 0.01
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.22
Consensus pattern (11 bp):
TGCAACCAGTG
Left flanking sequence: Indices 57177 -- 57676
GGTTGAGCTCGTCCTGGTACTTGGCAAAGCCCTGGTAGTTGTTACTTCGCTGGAGGTTAGTATGG
GAGGGGGTTGGGTGGGAGGGGTGGGGGAGAGGTGGGGAACGGAGGAATGGGTTTAAGTGGTTGGA
AGTGGGTGGGGGAAATGGGTGGGGANGTGGTTGGAAGTGGGTGGGGGAAATGGGTGGGGAAGTAG
GTAGGGTAAATGGGTGGTTTGAGCGGTTTGAGTGGTGGTGGTTTGAGTGGTGGTGGTTTAAGTGG
TGGTGGTGGTTTAGGTAGTTTTGCAACAGGCTCTGTAGATCAGTCGTTGGTGGAATTGGTTGCTT
GAGTGTGAGCTATCAACTAGTGTGCAATTGAAGTGCAATTGGTGTGCAACTTGTTTGAAAATGTT
GTTGTACTACTAGTGTCCAACTAGTGTGCAACTGATTTGCAATTGGTCTGTAACTGGTCTGCAAC
TGGTCTGCAACTGGTGTGCTCATGATGTGATAGTGATGTATCCAT
Right flanking sequence: Indices 57818 -- 58317
CAACCAGTGTGCAAAATTGTCCAATTCATCAATCACAGCACTACCAGTATCTCTACCAGCATCTC
TCCATCGCAACAATCCTCACCGCGGCTGGGCTTCCGCACGTCACAGCCACCATGTCACTTTGCAC
AATCCATCCACGTTCCACCACGGCACTTGGCATCCCTTCGCCATTCCGTTCCGGTGGCCACATTC
CTCGGATCCTCTCGGTACGCCTGCGGCGTCCAGGGGTTACTTACCCGTCTCGACGACGAAAACAA
ATTGACCATGCTCGGTTGGCTAGCGGAATAGGGTTTCTGGGGGGAAATACAATTAGGAGGCCGCT
AAACACAACAGAGACCGGGCAATTGGGGTGATAAACAACAACTGAAGTGGCTACTGTGAAATTGC
TCTGTTTATTATTGCGCGGGCGCCAGGGCTCGCGTGCTGCATGACGATGATGCTAGCAGGACGGG
CGCAACCGTTGGCGTGGTGGCGGAGAGAAAGCGAGAGACACTAGT
Found at i:59680 original size:12 final size:12
Alignment explanation
Indices: 59663--59697 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
59653 ACCCACCCCC
59663 ACGACTCGGACG
1 ACGACTCGGACG
59675 ACGACTCGGACG
1 ACGACTCGGACG
59687 ACGACTCGGAC
1 ACGACTCGGAC
59698 TGCGAGTCTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.26, C:0.34, G:0.31, T:0.09
Consensus pattern (12 bp):
ACGACTCGGACG
Left flanking sequence: Indices 59163 -- 59662
ACACTAAAAGACCCTGCCATTGTGTGGTGGGGCTGTAACGCTCCGCAACCACGCGGCTACCCGCC
AACTCGATCTATGCACCCCTGGAATTAGCCCCTTCGTGTGTCATATTGCATCCGCGCTAGTCGCG
ACTCTTCCGCTCGTTTCGTAACGGTGTAGCTGCATAGCCAACGCTGACACATAGCCTCGGCGCGT
CGGGGTCGAGACCCTTCAAGGGATGGATCCGTAATATATAAAGCCCTGGTGGCTACCGTCAGTTC
TCTACTTCATCTTCATCATGTTGTACTCCCAGATTCTCTCTATCTTGCTCGCTCCCGCTGGTCTT
GTGACCGTTTTGGCCCACCCGGCTGGACACCGGGGAAAGTGGGGCAAACTTGACTCTGAGGAAAG
CGCTGGCGCTTATGACGATGCTACCGAGACCGATGTCGTTCCCTCGGGGACCGCTTTGGCCGAGG
TGTTGCCCACTGGTGGCTGGCCCGACCGCAACTCGACCCACCCCC
Right flanking sequence: Indices 59698 -- 60197
TGCGAGTCTGACGACGAAGACAATGACAGAGGCTACGGTAAGGGCCGTGGAGGCCGTGGTCGCGG
TCGCCAAGGACGTGGTGGTCGTGCTGGTGGCCGTGGCGGCCGTGGTGGCCGTGGAGGCCAAGGTG
GGCCTGGCAAGCGCCACTGGGGTGGTAAGGGCAAGGGTAAGGGCCGTGGCAGAGGCAAGGGTAAG
GGCCATGGGAAGAAGTGTGGCCACAGAAAGGGCCACGGTCCCCACCACAACGGGACCGGTCCCTG
GTGGCACCACACCGGGTCTCACACCCACGGGTGGCCCGAGACTCCTCTCCCTACGGACACGTTGA
GTGAGGTTCCTTCCGTCTCTTTGCTGCTTGAGATCCCCACTGTTGAGCCCACTGTTGAGCCCACC
ATTGAGCTCCCCACCGTGCCCGAGCCCACTGACGAGCCCGAGCCTACTGACGAGCCTCTCCCCAC
TGACGAGCCTCTTCCCACTGACGAGCCCCTTCCCACTGACGAGCC
Found at i:59690 original size:24 final size:24
Alignment explanation
Indices: 59663--59714 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
59653 ACCCACCCCC
59663 ACGACTCGGAC-GACGACTCGGACG
1 ACGACTCGGACTG-CGACTCGGACG
* *
59687 ACGACTCGGACTGCGAGTCTGACG
1 ACGACTCGGACTGCGACTCGGACG
59711 ACGA
1 ACGA
59715 AGACAATGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 24 0.96
25 1 0.04
ACGTcount: A:0.25, C:0.31, G:0.33, T:0.12
Consensus pattern (24 bp):
ACGACTCGGACTGCGACTCGGACG
Left flanking sequence: Indices 59163 -- 59662
ACACTAAAAGACCCTGCCATTGTGTGGTGGGGCTGTAACGCTCCGCAACCACGCGGCTACCCGCC
AACTCGATCTATGCACCCCTGGAATTAGCCCCTTCGTGTGTCATATTGCATCCGCGCTAGTCGCG
ACTCTTCCGCTCGTTTCGTAACGGTGTAGCTGCATAGCCAACGCTGACACATAGCCTCGGCGCGT
CGGGGTCGAGACCCTTCAAGGGATGGATCCGTAATATATAAAGCCCTGGTGGCTACCGTCAGTTC
TCTACTTCATCTTCATCATGTTGTACTCCCAGATTCTCTCTATCTTGCTCGCTCCCGCTGGTCTT
GTGACCGTTTTGGCCCACCCGGCTGGACACCGGGGAAAGTGGGGCAAACTTGACTCTGAGGAAAG
CGCTGGCGCTTATGACGATGCTACCGAGACCGATGTCGTTCCCTCGGGGACCGCTTTGGCCGAGG
TGTTGCCCACTGGTGGCTGGCCCGACCGCAACTCGACCCACCCCC
Right flanking sequence: Indices 59715 -- 60214
AGACAATGACAGAGGCTACGGTAAGGGCCGTGGAGGCCGTGGTCGCGGTCGCCAAGGACGTGGTG
GTCGTGCTGGTGGCCGTGGCGGCCGTGGTGGCCGTGGAGGCCAAGGTGGGCCTGGCAAGCGCCAC
TGGGGTGGTAAGGGCAAGGGTAAGGGCCGTGGCAGAGGCAAGGGTAAGGGCCATGGGAAGAAGTG
TGGCCACAGAAAGGGCCACGGTCCCCACCACAACGGGACCGGTCCCTGGTGGCACCACACCGGGT
CTCACACCCACGGGTGGCCCGAGACTCCTCTCCCTACGGACACGTTGAGTGAGGTTCCTTCCGTC
TCTTTGCTGCTTGAGATCCCCACTGTTGAGCCCACTGTTGAGCCCACCATTGAGCTCCCCACCGT
GCCCGAGCCCACTGACGAGCCCGAGCCTACTGACGAGCCTCTCCCCACTGACGAGCCTCTTCCCA
CTGACGAGCCCCTTCCCACTGACGAGCCTCTTCCCACTGACGAGC
Found at i:59798 original size:18 final size:18
Alignment explanation
Indices: 59787--59821 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
59777 GTGGTCGTGC
59787 TGGTGGCCGTGGCGGCCG
1 TGGTGGCCGTGGCGGCCG
*
59805 TGGTGGCCGTGGAGGCC
1 TGGTGGCCGTGGCGGCC
59822 AAGGTGGGCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.03, C:0.26, G:0.54, T:0.17
Consensus pattern (18 bp):
TGGTGGCCGTGGCGGCCG
Left flanking sequence: Indices 59287 -- 59786
GTCGCGACTCTTCCGCTCGTTTCGTAACGGTGTAGCTGCATAGCCAACGCTGACACATAGCCTCG
GCGCGTCGGGGTCGAGACCCTTCAAGGGATGGATCCGTAATATATAAAGCCCTGGTGGCTACCGT
CAGTTCTCTACTTCATCTTCATCATGTTGTACTCCCAGATTCTCTCTATCTTGCTCGCTCCCGCT
GGTCTTGTGACCGTTTTGGCCCACCCGGCTGGACACCGGGGAAAGTGGGGCAAACTTGACTCTGA
GGAAAGCGCTGGCGCTTATGACGATGCTACCGAGACCGATGTCGTTCCCTCGGGGACCGCTTTGG
CCGAGGTGTTGCCCACTGGTGGCTGGCCCGACCGCAACTCGACCCACCCCCACGACTCGGACGAC
GACTCGGACGACGACTCGGACTGCGAGTCTGACGACGAAGACAATGACAGAGGCTACGGTAAGGG
CCGTGGAGGCCGTGGTCGCGGTCGCCAAGGACGTGGTGGTCGTGC
Right flanking sequence: Indices 59822 -- 60321
AAGGTGGGCCTGGCAAGCGCCACTGGGGTGGTAAGGGCAAGGGTAAGGGCCGTGGCAGAGGCAAG
GGTAAGGGCCATGGGAAGAAGTGTGGCCACAGAAAGGGCCACGGTCCCCACCACAACGGGACCGG
TCCCTGGTGGCACCACACCGGGTCTCACACCCACGGGTGGCCCGAGACTCCTCTCCCTACGGACA
CGTTGAGTGAGGTTCCTTCCGTCTCTTTGCTGCTTGAGATCCCCACTGTTGAGCCCACTGTTGAG
CCCACCATTGAGCTCCCCACCGTGCCCGAGCCCACTGACGAGCCCGAGCCTACTGACGAGCCTCT
CCCCACTGACGAGCCTCTTCCCACTGACGAGCCCCTTCCCACTGACGAGCCTCTTCCCACTGACG
AGCCTCTTCCCACTGACGAGCCCGAACCTACTGACGAACTTCCTACTGACCTTCCCCTCCCCACT
GACGAACTTCCTACTGACGAACTTCCCACTGACCTTCCCCCCGCC
Found at i:59827 original size:18 final size:18
Alignment explanation
Indices: 59788--59828 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
59778 TGGTCGTGCT
* **
59788 GGTGGCCGTGGCGGCCGT
1 GGTGGCCGTGGAGGCCAA
59806 GGTGGCCGTGGAGGCCAA
1 GGTGGCCGTGGAGGCCAA
59824 GGTGG
1 GGTGG
59829 GCCTGGCAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.07, C:0.22, G:0.56, T:0.15
Consensus pattern (18 bp):
GGTGGCCGTGGAGGCCAA
Left flanking sequence: Indices 59288 -- 59787
TCGCGACTCTTCCGCTCGTTTCGTAACGGTGTAGCTGCATAGCCAACGCTGACACATAGCCTCGG
CGCGTCGGGGTCGAGACCCTTCAAGGGATGGATCCGTAATATATAAAGCCCTGGTGGCTACCGTC
AGTTCTCTACTTCATCTTCATCATGTTGTACTCCCAGATTCTCTCTATCTTGCTCGCTCCCGCTG
GTCTTGTGACCGTTTTGGCCCACCCGGCTGGACACCGGGGAAAGTGGGGCAAACTTGACTCTGAG
GAAAGCGCTGGCGCTTATGACGATGCTACCGAGACCGATGTCGTTCCCTCGGGGACCGCTTTGGC
CGAGGTGTTGCCCACTGGTGGCTGGCCCGACCGCAACTCGACCCACCCCCACGACTCGGACGACG
ACTCGGACGACGACTCGGACTGCGAGTCTGACGACGAAGACAATGACAGAGGCTACGGTAAGGGC
CGTGGAGGCCGTGGTCGCGGTCGCCAAGGACGTGGTGGTCGTGCT
Right flanking sequence: Indices 59829 -- 60328
GCCTGGCAAGCGCCACTGGGGTGGTAAGGGCAAGGGTAAGGGCCGTGGCAGAGGCAAGGGTAAGG
GCCATGGGAAGAAGTGTGGCCACAGAAAGGGCCACGGTCCCCACCACAACGGGACCGGTCCCTGG
TGGCACCACACCGGGTCTCACACCCACGGGTGGCCCGAGACTCCTCTCCCTACGGACACGTTGAG
TGAGGTTCCTTCCGTCTCTTTGCTGCTTGAGATCCCCACTGTTGAGCCCACTGTTGAGCCCACCA
TTGAGCTCCCCACCGTGCCCGAGCCCACTGACGAGCCCGAGCCTACTGACGAGCCTCTCCCCACT
GACGAGCCTCTTCCCACTGACGAGCCCCTTCCCACTGACGAGCCTCTTCCCACTGACGAGCCTCT
TCCCACTGACGAGCCCGAACCTACTGACGAACTTCCTACTGACCTTCCCCTCCCCACTGACGAAC
TTCCTACTGACGAACTTCCCACTGACCTTCCCCCCGCCACGGTCG
Found at i:59876 original size:24 final size:24
Alignment explanation
Indices: 59849--59905 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 24
59839 CGCCACTGGG
59849 GTGGTAAG-GGCAAGGGTAAGGGCC
1 GTGG-AAGAGGCAAGGGTAAGGGCC
*
59873 GTGGCAGAGGCAAGGGTAAGGGCC
1 GTGGAAGAGGCAAGGGTAAGGGCC
*
59897 ATGGGAAGA
1 GT-GGAAGA
59906 AGTGTGGCCA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 2 0.07
24 21 0.75
25 5 0.18
ACGTcount: A:0.28, C:0.12, G:0.49, T:0.11
Consensus pattern (24 bp):
GTGGAAGAGGCAAGGGTAAGGGCC
Left flanking sequence: Indices 59349 -- 59848
TCGGCGCGTCGGGGTCGAGACCCTTCAAGGGATGGATCCGTAATATATAAAGCCCTGGTGGCTAC
CGTCAGTTCTCTACTTCATCTTCATCATGTTGTACTCCCAGATTCTCTCTATCTTGCTCGCTCCC
GCTGGTCTTGTGACCGTTTTGGCCCACCCGGCTGGACACCGGGGAAAGTGGGGCAAACTTGACTC
TGAGGAAAGCGCTGGCGCTTATGACGATGCTACCGAGACCGATGTCGTTCCCTCGGGGACCGCTT
TGGCCGAGGTGTTGCCCACTGGTGGCTGGCCCGACCGCAACTCGACCCACCCCCACGACTCGGAC
GACGACTCGGACGACGACTCGGACTGCGAGTCTGACGACGAAGACAATGACAGAGGCTACGGTAA
GGGCCGTGGAGGCCGTGGTCGCGGTCGCCAAGGACGTGGTGGTCGTGCTGGTGGCCGTGGCGGCC
GTGGTGGCCGTGGAGGCCAAGGTGGGCCTGGCAAGCGCCACTGGG
Right flanking sequence: Indices 59906 -- 60405
AGTGTGGCCACAGAAAGGGCCACGGTCCCCACCACAACGGGACCGGTCCCTGGTGGCACCACACC
GGGTCTCACACCCACGGGTGGCCCGAGACTCCTCTCCCTACGGACACGTTGAGTGAGGTTCCTTC
CGTCTCTTTGCTGCTTGAGATCCCCACTGTTGAGCCCACTGTTGAGCCCACCATTGAGCTCCCCA
CCGTGCCCGAGCCCACTGACGAGCCCGAGCCTACTGACGAGCCTCTCCCCACTGACGAGCCTCTT
CCCACTGACGAGCCCCTTCCCACTGACGAGCCTCTTCCCACTGACGAGCCTCTTCCCACTGACGA
GCCCGAACCTACTGACGAACTTCCTACTGACCTTCCCCTCCCCACTGACGAACTTCCTACTGACG
AACTTCCCACTGACCTTCCCCCCGCCACGGTCGAGACCGCAGCGTCGCCGATTTCTGCTGCTGAT
GCTGCCACCGCCCTCGTGGTCTAACCAAAGAATTGTTTAGTATAC
Found at i:60075 original size:12 final size:12
Alignment explanation
Indices: 60058--60086 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
60048 GCTTGAGATC
60058 CCCACTGTTGAG
1 CCCACTGTTGAG
60070 CCCACTGTTGAG
1 CCCACTGTTGAG
60082 CCCAC
1 CCCAC
60087 CATTGAGCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.41, G:0.21, T:0.21
Consensus pattern (12 bp):
CCCACTGTTGAG
Left flanking sequence: Indices 59558 -- 60057
GCGCTTATGACGATGCTACCGAGACCGATGTCGTTCCCTCGGGGACCGCTTTGGCCGAGGTGTTG
CCCACTGGTGGCTGGCCCGACCGCAACTCGACCCACCCCCACGACTCGGACGACGACTCGGACGA
CGACTCGGACTGCGAGTCTGACGACGAAGACAATGACAGAGGCTACGGTAAGGGCCGTGGAGGCC
GTGGTCGCGGTCGCCAAGGACGTGGTGGTCGTGCTGGTGGCCGTGGCGGCCGTGGTGGCCGTGGA
GGCCAAGGTGGGCCTGGCAAGCGCCACTGGGGTGGTAAGGGCAAGGGTAAGGGCCGTGGCAGAGG
CAAGGGTAAGGGCCATGGGAAGAAGTGTGGCCACAGAAAGGGCCACGGTCCCCACCACAACGGGA
CCGGTCCCTGGTGGCACCACACCGGGTCTCACACCCACGGGTGGCCCGAGACTCCTCTCCCTACG
GACACGTTGAGTGAGGTTCCTTCCGTCTCTTTGCTGCTTGAGATC
Right flanking sequence: Indices 60087 -- 60586
CATTGAGCTCCCCACCGTGCCCGAGCCCACTGACGAGCCCGAGCCTACTGACGAGCCTCTCCCCA
CTGACGAGCCTCTTCCCACTGACGAGCCCCTTCCCACTGACGAGCCTCTTCCCACTGACGAGCCT
CTTCCCACTGACGAGCCCGAACCTACTGACGAACTTCCTACTGACCTTCCCCTCCCCACTGACGA
ACTTCCTACTGACGAACTTCCCACTGACCTTCCCCCCGCCACGGTCGAGACCGCAGCGTCGCCGA
TTTCTGCTGCTGATGCTGCCACCGCCCTCGTGGTCTAACCAAAGAATTGTTTAGTATACTTTTGA
ACCGTTTATATGAATATACCAATGCTGACTAACATCTCCGGCTATCTCCCGCTATCGCCGGCTCA
CGTGACACGTCACCTAGGCTGATTGCAAATCATGCATGGCCCATATAAAGGAAGCGAATGGCTGC
AAAAACGACCGATGAAACTAGTGGCTGCGGCGGTATTGCTACTTT
Found at i:60136 original size:18 final size:18
Alignment explanation
Indices: 60105--60248 Score: 98
Period size: 18 Copynumber: 8.0 Consensus size: 18
60095 TCCCCACCGT
60105 GCCCGAGCCCACTGACGA
1 GCCCGAGCCCACTGACGA
*
60123 GCCCGAGCCTACTGACGA
1 GCCCGAGCCCACTGACGA
**
60141 GCCTC-TCCCCACTGACGA
1 GCC-CGAGCCCACTGACGA
**
60159 GCCTC-TTCCCACTGACGA
1 GCC-CGAGCCCACTGACGA
***
60177 GCCCCTTCCCACTGACGA
1 GCCCGAGCCCACTGACGA
**
60195 GCCTC-TTCCCACTGACGA
1 GCC-CGAGCCCACTGACGA
**
60213 GCCTC-TTCCCACTGACGA
1 GCC-CGAGCCCACTGACGA
* *
60231 GCCCGAACCTACTGACGA
1 GCCCGAGCCCACTGACGA
60249 ACTTCCTACT
Statistics
Matches: 114, Mismatches: 8, Indels: 8
0.88 0.06 0.06
Matches are distributed among these distances:
17 2 0.02
18 110 0.96
19 2 0.02
ACGTcount: A:0.19, C:0.44, G:0.20, T:0.16
Consensus pattern (18 bp):
GCCCGAGCCCACTGACGA
Left flanking sequence: Indices 59605 -- 60104
GCTTTGGCCGAGGTGTTGCCCACTGGTGGCTGGCCCGACCGCAACTCGACCCACCCCCACGACTC
GGACGACGACTCGGACGACGACTCGGACTGCGAGTCTGACGACGAAGACAATGACAGAGGCTACG
GTAAGGGCCGTGGAGGCCGTGGTCGCGGTCGCCAAGGACGTGGTGGTCGTGCTGGTGGCCGTGGC
GGCCGTGGTGGCCGTGGAGGCCAAGGTGGGCCTGGCAAGCGCCACTGGGGTGGTAAGGGCAAGGG
TAAGGGCCGTGGCAGAGGCAAGGGTAAGGGCCATGGGAAGAAGTGTGGCCACAGAAAGGGCCACG
GTCCCCACCACAACGGGACCGGTCCCTGGTGGCACCACACCGGGTCTCACACCCACGGGTGGCCC
GAGACTCCTCTCCCTACGGACACGTTGAGTGAGGTTCCTTCCGTCTCTTTGCTGCTTGAGATCCC
CACTGTTGAGCCCACTGTTGAGCCCACCATTGAGCTCCCCACCGT
Right flanking sequence: Indices 60249 -- 60748
ACTTCCTACTGACCTTCCCCTCCCCACTGACGAACTTCCTACTGACGAACTTCCCACTGACCTTC
CCCCCGCCACGGTCGAGACCGCAGCGTCGCCGATTTCTGCTGCTGATGCTGCCACCGCCCTCGTG
GTCTAACCAAAGAATTGTTTAGTATACTTTTGAACCGTTTATATGAATATACCAATGCTGACTAA
CATCTCCGGCTATCTCCCGCTATCGCCGGCTCACGTGACACGTCACCTAGGCTGATTGCAAATCA
TGCATGGCCCATATAAAGGAAGCGAATGGCTGCAAAAACGACCGATGAAACTAGTGGCTGCGGCG
GTATTGCTACTTTCGATCGTTTACTACTACTTTTACTCAACCAAAACCACCAGTGAACCCATGTC
GATGGCCAAATTTGTTGCCAACGCCAAGCCCTTCCCCACGTACTTCTTTTCCCATGGTGGTCCCA
CCTTTATGTACGAGGATGACGACTTCGGGAACAAGGGGGCGTGGA
Found at i:60170 original size:54 final size:54
Alignment explanation
Indices: 60112--60248 Score: 220
Period size: 54 Copynumber: 2.5 Consensus size: 54
60102 CGTGCCCGAG
*
60112 CCCACTGACGAGCCCGAGCCTACTGACGAGCCTCTCCCCACTGACGAGCCTCTT
1 CCCACTGACGAGCCCGAACCTACTGACGAGCCTCTCCCCACTGACGAGCCTCTT
*** * *
60166 CCCACTGACGAGCCCCTTCCCACTGACGAGCCTCTTCCCACTGACGAGCCTCTT
1 CCCACTGACGAGCCCGAACCTACTGACGAGCCTCTCCCCACTGACGAGCCTCTT
60220 CCCACTGACGAGCCCGAACCTACTGACGA
1 CCCACTGACGAGCCCGAACCTACTGACGA
60249 ACTTCCTACT
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 74 1.00
ACGTcount: A:0.20, C:0.45, G:0.19, T:0.17
Consensus pattern (54 bp):
CCCACTGACGAGCCCGAACCTACTGACGAGCCTCTCCCCACTGACGAGCCTCTT
Left flanking sequence: Indices 59612 -- 60111
CCGAGGTGTTGCCCACTGGTGGCTGGCCCGACCGCAACTCGACCCACCCCCACGACTCGGACGAC
GACTCGGACGACGACTCGGACTGCGAGTCTGACGACGAAGACAATGACAGAGGCTACGGTAAGGG
CCGTGGAGGCCGTGGTCGCGGTCGCCAAGGACGTGGTGGTCGTGCTGGTGGCCGTGGCGGCCGTG
GTGGCCGTGGAGGCCAAGGTGGGCCTGGCAAGCGCCACTGGGGTGGTAAGGGCAAGGGTAAGGGC
CGTGGCAGAGGCAAGGGTAAGGGCCATGGGAAGAAGTGTGGCCACAGAAAGGGCCACGGTCCCCA
CCACAACGGGACCGGTCCCTGGTGGCACCACACCGGGTCTCACACCCACGGGTGGCCCGAGACTC
CTCTCCCTACGGACACGTTGAGTGAGGTTCCTTCCGTCTCTTTGCTGCTTGAGATCCCCACTGTT
GAGCCCACTGTTGAGCCCACCATTGAGCTCCCCACCGTGCCCGAG
Right flanking sequence: Indices 60249 -- 60748
ACTTCCTACTGACCTTCCCCTCCCCACTGACGAACTTCCTACTGACGAACTTCCCACTGACCTTC
CCCCCGCCACGGTCGAGACCGCAGCGTCGCCGATTTCTGCTGCTGATGCTGCCACCGCCCTCGTG
GTCTAACCAAAGAATTGTTTAGTATACTTTTGAACCGTTTATATGAATATACCAATGCTGACTAA
CATCTCCGGCTATCTCCCGCTATCGCCGGCTCACGTGACACGTCACCTAGGCTGATTGCAAATCA
TGCATGGCCCATATAAAGGAAGCGAATGGCTGCAAAAACGACCGATGAAACTAGTGGCTGCGGCG
GTATTGCTACTTTCGATCGTTTACTACTACTTTTACTCAACCAAAACCACCAGTGAACCCATGTC
GATGGCCAAATTTGTTGCCAACGCCAAGCCCTTCCCCACGTACTTCTTTTCCCATGGTGGTCCCA
CCTTTATGTACGAGGATGACGACTTCGGGAACAAGGGGGCGTGGA
Found at i:60248 original size:36 final size:36
Alignment explanation
Indices: 60112--60233 Score: 174
Period size: 36 Copynumber: 3.4 Consensus size: 36
60102 CGTGCCCGAG
* * *
60112 CCCACTGACGAGCC-CGAGCCTACTGACGAGCCTCTC
1 CCCACTGACGAGCCTC-ATCCCACTGACGAGCCTCTT
* *
60148 CCCACTGACGAGCCTCTTCCCACTGACGAGCCCCTT
1 CCCACTGACGAGCCTCATCCCACTGACGAGCCTCTT
*
60184 CCCACTGACGAGCCTCTTCCCACTGACGAGCCTCTT
1 CCCACTGACGAGCCTCATCCCACTGACGAGCCTCTT
60220 CCCACTGACGAGCC
1 CCCACTGACGAGCC
60234 CGAACCTACT
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
36 78 0.99
37 1 0.01
ACGTcount: A:0.18, C:0.46, G:0.19, T:0.17
Consensus pattern (36 bp):
CCCACTGACGAGCCTCATCCCACTGACGAGCCTCTT
Left flanking sequence: Indices 59612 -- 60111
CCGAGGTGTTGCCCACTGGTGGCTGGCCCGACCGCAACTCGACCCACCCCCACGACTCGGACGAC
GACTCGGACGACGACTCGGACTGCGAGTCTGACGACGAAGACAATGACAGAGGCTACGGTAAGGG
CCGTGGAGGCCGTGGTCGCGGTCGCCAAGGACGTGGTGGTCGTGCTGGTGGCCGTGGCGGCCGTG
GTGGCCGTGGAGGCCAAGGTGGGCCTGGCAAGCGCCACTGGGGTGGTAAGGGCAAGGGTAAGGGC
CGTGGCAGAGGCAAGGGTAAGGGCCATGGGAAGAAGTGTGGCCACAGAAAGGGCCACGGTCCCCA
CCACAACGGGACCGGTCCCTGGTGGCACCACACCGGGTCTCACACCCACGGGTGGCCCGAGACTC
CTCTCCCTACGGACACGTTGAGTGAGGTTCCTTCCGTCTCTTTGCTGCTTGAGATCCCCACTGTT
GAGCCCACTGTTGAGCCCACCATTGAGCTCCCCACCGTGCCCGAG
Right flanking sequence: Indices 60234 -- 60733
CGAACCTACTGACGAACTTCCTACTGACCTTCCCCTCCCCACTGACGAACTTCCTACTGACGAAC
TTCCCACTGACCTTCCCCCCGCCACGGTCGAGACCGCAGCGTCGCCGATTTCTGCTGCTGATGCT
GCCACCGCCCTCGTGGTCTAACCAAAGAATTGTTTAGTATACTTTTGAACCGTTTATATGAATAT
ACCAATGCTGACTAACATCTCCGGCTATCTCCCGCTATCGCCGGCTCACGTGACACGTCACCTAG
GCTGATTGCAAATCATGCATGGCCCATATAAAGGAAGCGAATGGCTGCAAAAACGACCGATGAAA
CTAGTGGCTGCGGCGGTATTGCTACTTTCGATCGTTTACTACTACTTTTACTCAACCAAAACCAC
CAGTGAACCCATGTCGATGGCCAAATTTGTTGCCAACGCCAAGCCCTTCCCCACGTACTTCTTTT
CCCATGGTGGTCCCACCTTTATGTACGAGGATGACGACTTCGGGA
Found at i:60260 original size:33 final size:33
Alignment explanation
Indices: 60181--60296 Score: 88
Period size: 33 Copynumber: 3.4 Consensus size: 33
60171 TGACGAGCCC
* * ** *
60181 CTTCCCACTGACGAGCCTCTTCCCACTGACGAGCCT
1 CTTCCTACTGACGAGCCCCAACCCACTGACGA---A
* * *
60217 CTTCCCACTGACGAGCCCGAACCTACTGACGAA
1 CTTCCTACTGACGAGCCCCAACCCACTGACGAA
*** **
60250 CTTCCTACTGACCTTCCCCTCCCCACTGACGAA
1 CTTCCTACTGACGAGCCCCAACCCACTGACGAA
60283 CTTCCTACTGACGA
1 CTTCCTACTGACGA
60297 ACTTCCCACT
Statistics
Matches: 64, Mismatches: 16, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
33 37 0.58
36 27 0.42
ACGTcount: A:0.21, C:0.43, G:0.15, T:0.22
Consensus pattern (33 bp):
CTTCCTACTGACGAGCCCCAACCCACTGACGAA
Left flanking sequence: Indices 59681 -- 60180
CGGACGACGACTCGGACTGCGAGTCTGACGACGAAGACAATGACAGAGGCTACGGTAAGGGCCGT
GGAGGCCGTGGTCGCGGTCGCCAAGGACGTGGTGGTCGTGCTGGTGGCCGTGGCGGCCGTGGTGG
CCGTGGAGGCCAAGGTGGGCCTGGCAAGCGCCACTGGGGTGGTAAGGGCAAGGGTAAGGGCCGTG
GCAGAGGCAAGGGTAAGGGCCATGGGAAGAAGTGTGGCCACAGAAAGGGCCACGGTCCCCACCAC
AACGGGACCGGTCCCTGGTGGCACCACACCGGGTCTCACACCCACGGGTGGCCCGAGACTCCTCT
CCCTACGGACACGTTGAGTGAGGTTCCTTCCGTCTCTTTGCTGCTTGAGATCCCCACTGTTGAGC
CCACTGTTGAGCCCACCATTGAGCTCCCCACCGTGCCCGAGCCCACTGACGAGCCCGAGCCTACT
GACGAGCCTCTCCCCACTGACGAGCCTCTTCCCACTGACGAGCCC
Right flanking sequence: Indices 60297 -- 60796
ACTTCCCACTGACCTTCCCCCCGCCACGGTCGAGACCGCAGCGTCGCCGATTTCTGCTGCTGATG
CTGCCACCGCCCTCGTGGTCTAACCAAAGAATTGTTTAGTATACTTTTGAACCGTTTATATGAAT
ATACCAATGCTGACTAACATCTCCGGCTATCTCCCGCTATCGCCGGCTCACGTGACACGTCACCT
AGGCTGATTGCAAATCATGCATGGCCCATATAAAGGAAGCGAATGGCTGCAAAAACGACCGATGA
AACTAGTGGCTGCGGCGGTATTGCTACTTTCGATCGTTTACTACTACTTTTACTCAACCAAAACC
ACCAGTGAACCCATGTCGATGGCCAAATTTGTTGCCAACGCCAAGCCCTTCCCCACGTACTTCTT
TTCCCATGGTGGTCCCACCTTTATGTACGAGGATGACGACTTCGGGAACAAGGGGGCGTGGAAAG
CGGTTCGCAAGATTGGCCGCACCATCAAGAAGTGGCAGCCCGACT
Found at i:60294 original size:15 final size:15
Alignment explanation
Indices: 60271--60309 Score: 69
Period size: 15 Copynumber: 2.6 Consensus size: 15
60261 CCTTCCCCTC
60271 CCCACTGACGAACTT
1 CCCACTGACGAACTT
*
60286 CCTACTGACGAACTT
1 CCCACTGACGAACTT
60301 CCCACTGAC
1 CCCACTGAC
60310 CTTCCCCCCG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.26, C:0.41, G:0.13, T:0.21
Consensus pattern (15 bp):
CCCACTGACGAACTT
Left flanking sequence: Indices 59771 -- 60270
GACGTGGTGGTCGTGCTGGTGGCCGTGGCGGCCGTGGTGGCCGTGGAGGCCAAGGTGGGCCTGGC
AAGCGCCACTGGGGTGGTAAGGGCAAGGGTAAGGGCCGTGGCAGAGGCAAGGGTAAGGGCCATGG
GAAGAAGTGTGGCCACAGAAAGGGCCACGGTCCCCACCACAACGGGACCGGTCCCTGGTGGCACC
ACACCGGGTCTCACACCCACGGGTGGCCCGAGACTCCTCTCCCTACGGACACGTTGAGTGAGGTT
CCTTCCGTCTCTTTGCTGCTTGAGATCCCCACTGTTGAGCCCACTGTTGAGCCCACCATTGAGCT
CCCCACCGTGCCCGAGCCCACTGACGAGCCCGAGCCTACTGACGAGCCTCTCCCCACTGACGAGC
CTCTTCCCACTGACGAGCCCCTTCCCACTGACGAGCCTCTTCCCACTGACGAGCCTCTTCCCACT
GACGAGCCCGAACCTACTGACGAACTTCCTACTGACCTTCCCCTC
Right flanking sequence: Indices 60310 -- 60809
CTTCCCCCCGCCACGGTCGAGACCGCAGCGTCGCCGATTTCTGCTGCTGATGCTGCCACCGCCCT
CGTGGTCTAACCAAAGAATTGTTTAGTATACTTTTGAACCGTTTATATGAATATACCAATGCTGA
CTAACATCTCCGGCTATCTCCCGCTATCGCCGGCTCACGTGACACGTCACCTAGGCTGATTGCAA
ATCATGCATGGCCCATATAAAGGAAGCGAATGGCTGCAAAAACGACCGATGAAACTAGTGGCTGC
GGCGGTATTGCTACTTTCGATCGTTTACTACTACTTTTACTCAACCAAAACCACCAGTGAACCCA
TGTCGATGGCCAAATTTGTTGCCAACGCCAAGCCCTTCCCCACGTACTTCTTTTCCCATGGTGGT
CCCACCTTTATGTACGAGGATGACGACTTCGGGAACAAGGGGGCGTGGAAAGCGGTTCGCAAGAT
TGGCCGCACCATCAAGAAGTGGCAGCCCGACTACATCATCGTGGT
Found at i:63970 original size:14 final size:13
Alignment explanation
Indices: 63935--63970 Score: 54
Period size: 13 Copynumber: 2.7 Consensus size: 13
63925 TGGAAAACTA
63935 CCATCAAATTGTC
1 CCATCAAATTGTC
*
63948 CCTTCAAATTGTCC
1 CCATCAAATTGT-C
63962 CCATCAAAT
1 CCATCAAAT
63971 CCAGTGAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 11 0.55
14 9 0.45
ACGTcount: A:0.31, C:0.33, G:0.06, T:0.31
Consensus pattern (13 bp):
CCATCAAATTGTC
Left flanking sequence: Indices 63435 -- 63934
CCGCGAGCGGATTGACATCATCAAAAAGATCAAGATCGAGCTGGAGATCGGAGAGGTGGAGAACA
ACGTGCTCCGGAACGTGGGCAAAGTGGAGCGGTTCCTCACTGAGCGGCTCCGGCTGATGCTCCGC
GAGGAGATTGCGTGGCCGAGCTGGCTCTGCTTTGACATGGCCGACGAGAGCGACGACGAGGATGC
ATAATGATATATGATAATAGACTAATGAGAAAGGATGGTACGGGGTGTGTTAGAGTGGGGAGTTT
GGGTACGCCTGTATGATAGTGGTCTGGGTGTATAGTGATGTTCACGTTGTTGTTGTAGTAAATTC
GTGTAACTTGAAAGGTACCGTGAATGGTGAGGTTGCAGTTGAACCGAGTGAGTACCTTTGGGATT
ATTGTCGTCCTAATTGATGAGTCTGTGTTCTTGTTTGCGTTTTGGGGACATTTCACTGCATGTAT
TCGCAGCCAAATCAACCAGAGGTAGGTGATACCATTGGAAAACTA
Right flanking sequence: Indices 63971 -- 64470
CCAGTGAAACAAGTCCGACTCTACCGCTTTTTCTTCTATCCTCTGATATGATATGCCTGTTTTCC
GATCCCTTTCATAAATATTTCCTTCCCATACTTCTCTTATCGCATTTTTCAGTCCTACCACCATG
TCTCTGGCCCCAATTGACGAGCTTTTACACCAGTTCAAGTTCGTCCGCGAACTTGCAAGCGACCC
CCAGTGCAAGCTGGTGGCGCTCCTTGGCACCATTGGTGCTGACCAGGCCATTGTCAAACTCGAGC
GCTCCCACGTCGACATCGACCCCTCGGAGCCATTCCTCGACTCTATCGAGCTCATCCAGCACAAC
GACATCTACTACTGGGCCCGTGCGAAGCTCCGTGAGCAGCACGGCACCAAGCTCGATGTGATCTG
CCCCGCCACCGACACCCACATCCGCAAGTACGACACCCAGCAGTACCACATGGTTCGCGAAACCC
CCGAGATGTACCAGCAGTACGCTGTTCCCTACATCAAACTGCAGC
Found at i:65134 original size:16 final size:16
Alignment explanation
Indices: 65115--65148 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
65105 ACTCTAACCG
*
65115 TCGTCGATGCTAACTA
1 TCGTCAATGCTAACTA
65131 TCGTCAATGCTAACTA
1 TCGTCAATGCTAACTA
65147 TC
1 TC
65149 AAGCTGTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.26, C:0.26, G:0.15, T:0.32
Consensus pattern (16 bp):
TCGTCAATGCTAACTA
Left flanking sequence: Indices 64615 -- 65114
ACCTCACCGGGATTGTCAACACCAAGAGCATTGGGTGTGTGCGTGACCTTGGTGGCCAGCACTTG
CCGTGGTTGAAGCAGATGCGGAAGACCATTTTCAAGGTGGTGAAGGAGAAGTACGGGTTGGCAAG
CGATAAGGTGCGGGTGTTTGTGCACTACCAGCCGTCATACTACCACTTCCACATCCACATTGTCA
ACGTGGTGCATCCTGGGCTCGGGAACGGGATCACCGCGGGCAAGGCGATCTTGCTTGACGACATC
ATCACCAATTTGGAGGTGAAGGCGGACTACTACCAGACACAGGCTCTCACGTATCTTTTGGGGGA
GAACCACGGGCTCTGGGCGATTGACGGGTACCGCAAAGCCCACTTGAAGAGTGTGGCTGAGGAGT
AGAGGTGAAGGAGGTAAACTTCGACGTCACGCTCATTTGAAGAAGCAATGGAGTAATCGGTTGAA
TCTGAGAGAATCGACTTAAATATCAAGTCCAAAGCACTCTAACCG
Right flanking sequence: Indices 65149 -- 65648
AAGCTGTCAAACGGTTGTTGTGGGTCAGAAGCCCTAACTGACTCATTGACCCTCCTTTACCTTTA
CAACCAGGTACCCAGCACCTTAGTAGCCCCTAATTATATGCCATGACTTACTCTATAAACATCCT
AGTAGTTAAACTCGCCCGCCTGGTCGCGCACCGCCGCCTTGGCCATCCGCAACATCTTCGTGCGG
GCATCCTCCTTCGGAGCAGCTCTCTTCGTCCCGGGGTTGCTCCCGGCGGCGCCACCAATCTTCTT
GGGCGTCTCCCGGAGCCCAAACGACTTGGCCAAGTGGCCCAAGTGGATCTTCTTGACGTTGAAGA
ACTCCTTCTCGGTGTTCAAGTGGGTCGCGTACGCCCGGATGTGCGAGGTGAACCCCTTGACCGCG
AGGTCCTTGGCCGCCTCGTCCTCCAACAACCACCGCTCGACGTTCAAGTGCCAGGTAGTGGCGTG
GGTGTCCCAGTCGTCCTTCTTGTCGCCCAGGAACTGCTTGAGCAC
Found at i:71811 original size:12 final size:12
Alignment explanation
Indices: 71796--71820 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
71786 AAAACATACT
71796 AGAACTAGCACG
1 AGAACTAGCACG
71808 AGAACTAGCACG
1 AGAACTAGCACG
71820 A
1 A
71821 ATCTATTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.24, G:0.24, T:0.08
Consensus pattern (12 bp):
AGAACTAGCACG
Left flanking sequence: Indices 71296 -- 71795
CAGTGCTTGTTCGTCGGGGATAAGCCTTGTCAACCGCGACCGGATGTCGCCAATGGCTGGCCCTC
CAATGACCCGGATGAGCTCGCTGGTGGAGCCACCGTTGTCGGAAATGGGGATCACGTAGTTGACG
TTGCTGGTGATGTGGGCAAAGAGCCCCACGAGCTCGTTGGTGGCCGTGCCCCCCAGGAACACGGT
GAGCTTCATGGGTGTTTATGGTCGTGCGGCTTACGCGGTGGCTGCAAAAGAGGGGACAAAGAGGG
GAAGCGAGCGGGTACAAAGGCCGGGTGGGTGAGGGTGCAAAGAAGAGGGGCTTGGGGTTGTGATG
ATTGGTTTTGGAGTGGGGTAGGGTGGCGTGGGTGTATCAATGGGTTAGAACTATTTTGTATGGGG
ACTATTTGAATGGGTGGAATTGTTCCGTTGCAATAGAAACTAGTAGTGGACTAATGGTATTAATG
CGAGTTAGCCGATGGTACGAATAAGGCGTGACTACAAAACATACT
Right flanking sequence: Indices 71821 -- 72320
ATCTATTTTCAAATGCATTTAACTAAATGATGTAGATACAGCTCTCGTTCTCTAGTCATCGAGTA
GGTTCACTGACTGTCCGTTGACGAACCGAAGATTGGGGTGAGCAATGCGACCTCCAATCGTCTCC
CACCTCACTCACCGGTTGCTCACGTACAACCACTCAAGCGACGTGGGCCGGTCGCCAAACATCAA
CCACACGTCCGAGCTCGCGTCGTTGTCGTCGGGCGGGTAGAGCAACGAGATGTTGATGGCCAGCA
GCGGGAGCCACAACTGGTTGAAATCGTTGCCAGACAACGCAAAGTCCATCTTGAGACACTTCAAT
CGGGGGGCCTGGCACCACACGCTCATGAGTTGGCCAATGTCGTATGCGGAAAAGAACTGGAGGTA
CACCACCTCAACTGCTGGCGGTAAGCGGATCTCTTTGTATCCAGAGTTGACGTCCACCGACTGGC
CCACCTGGGTTGTCTCAGCGTCGTACTTCCACTTACCGTCAATGA
Found at i:84063 original size:3 final size:3
Alignment explanation
Indices: 84055--84080 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
84045 CAGCGACCAG
84055 CAA CAA CAA CAA CAA CAA CAA CAA CA
1 CAA CAA CAA CAA CAA CAA CAA CAA CA
84081 TCACCAACAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.35, G:0.00, T:0.00
Consensus pattern (3 bp):
CAA
Left flanking sequence: Indices 83555 -- 84054
CTATTACTAGCAAAATGAGTATTACATAATGTATTATGTTAAAGGATAGAACGGTCCCCTCACCT
TAATCTATACGACGGGACTATACGACGACGGTTCACTAATTGTGGTAGAAGACTTTACGAGCATT
ACATAACCGCTTTACGAGCTGACCTAATATACTGGTGCGGCTCAAAAATACATGTGATACTGATC
ACGTGACTGCACTGTTGATACCGTAGATAGCGTTGATTATAGGGAACCTGTATATATCCTATATA
CTACAATATAAGCCCCCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACCCCGAAGGCGCA
CCCAGTGCTTAACTAAATAATTATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGGGG
AAAAAACGGTGCCAATAGCACCCGATCCAACGAATTGAATCGGATACCATTGGCACCACCAACAG
GGGGAAAAAGGAGCCATTGGCATCCAACCCTTCAACAGCGACCAG
Right flanking sequence: Indices 84081 -- 84580
TCACCAACACCGACACACCAACACCAAACACCAAACACCAAACACCAACACACCAACACCAACAC
ACCAACACCAACACCAACACCACCAACATCAACACCACCAACACCAAAAAAGAGGGGGTGGCACC
ACTAGTACTTTCTGATATCGTCTCCCATATGGCTAAGGAAGCGAAGCCCAGAGGCTTGCAACTCC
CCGCACCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCTGACGCTAGATTGCACCTCCCA
CCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCACATGTCAGGACTGTTCGAGGACC
CGTAGCTGGTAGGTGGCCAACCTACCAGTAACAAACCCTGTCACCAGACCAACAGACGCTGAGCC
ATTACCATGGCGCGAAGCGCCAACGGATAATGACCCAGCCGAGAGACTCCATCAGAAGTACCAGC
AGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAAG
Found at i:84091 original size:6 final size:6
Alignment explanation
Indices: 84055--84192 Score: 105
Period size: 6 Copynumber: 21.5 Consensus size: 6
84045 CAGCGACCAG
* * * * *
84055 CAACAA CAACAA CAACAA CAACAA CATCAC CAACAC CGACACAC CAACAC
1 CAACAC CAACAC CAACAC CAACAC CAACAC CAACAC C-A-ACAC CAACAC
84105 CAAACAC CAAACAC CAAACAC CAACACAC CAACAC CAACACAC CAACAC
1 C-AACAC C-AACAC C-AACAC C-A-ACAC CAACAC C-A-ACAC CAACAC
* * * * *
84154 CAACAC CAACAC CACCAA CATCAA CACCAC CAACAC CAA
1 CAACAC CAACAC CAACAC CAACAC CAACAC CAACAC CAA
84193 AAAAGAGGGG
Statistics
Matches: 117, Mismatches: 9, Indels: 12
0.85 0.07 0.09
Matches are distributed among these distances:
6 75 0.64
7 27 0.23
8 15 0.13
ACGTcount: A:0.52, C:0.46, G:0.01, T:0.01
Consensus pattern (6 bp):
CAACAC
Left flanking sequence: Indices 83555 -- 84054
CTATTACTAGCAAAATGAGTATTACATAATGTATTATGTTAAAGGATAGAACGGTCCCCTCACCT
TAATCTATACGACGGGACTATACGACGACGGTTCACTAATTGTGGTAGAAGACTTTACGAGCATT
ACATAACCGCTTTACGAGCTGACCTAATATACTGGTGCGGCTCAAAAATACATGTGATACTGATC
ACGTGACTGCACTGTTGATACCGTAGATAGCGTTGATTATAGGGAACCTGTATATATCCTATATA
CTACAATATAAGCCCCCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACCCCGAAGGCGCA
CCCAGTGCTTAACTAAATAATTATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGGGG
AAAAAACGGTGCCAATAGCACCCGATCCAACGAATTGAATCGGATACCATTGGCACCACCAACAG
GGGGAAAAAGGAGCCATTGGCATCCAACCCTTCAACAGCGACCAG
Right flanking sequence: Indices 84193 -- 84692
AAAAGAGGGGGTGGCACCACTAGTACTTTCTGATATCGTCTCCCATATGGCTAAGGAAGCGAAGC
CCAGAGGCTTGCAACTCCCCGCACCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCTGAC
GCTAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCACATGT
CAGGACTGTTCGAGGACCCGTAGCTGGTAGGTGGCCAACCTACCAGTAACAAACCCTGTCACCAG
ACCAACAGACGCTGAGCCATTACCATGGCGCGAAGCGCCAACGGATAATGACCCAGCCGAGAGAC
TCCATCAGAAGTACCAGCAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAAGCT
TTGATTTGCCTCCTTGAGGGGATTTTTTTCCCCCATCTTCTTTGATTTTCTCTTTGCTTGTCGCT
GCCTTCCGTAGTAACGGGAAAGGAGCCGGGCTTGCAGGGTGCAAG
Found at i:84103 original size:35 final size:34
Alignment explanation
Indices: 84058--84192 Score: 105
Period size: 35 Copynumber: 3.9 Consensus size: 34
84048 CGACCAGCAA
* * *
84058 CAACAACAACAACAACAACAACATCACCAACAC-C
1 CAACACCAACAACAAC-ACACCAACACCAACACAC
* *
84092 GACACACCAACACCAA-ACACCAAACACCAA-ACAC
1 CA-ACACCAACAACAACACACC-AACACCAACACAC
* *
84126 CAACACACCAACACCAACACACCAACACCAACACCAA
1 C-A-ACACCAACAACAACACACCAACACCAACA-CAC
* *
84163 CACCACCAACATCAACACCACCAACACCAA
1 CAACACCAACAACAACA-CACCAACACCAA
84193 AAAAGAGGGG
Statistics
Matches: 84, Mismatches: 9, Indels: 14
0.79 0.08 0.13
Matches are distributed among these distances:
33 6 0.07
34 9 0.11
35 47 0.56
36 19 0.23
37 3 0.04
ACGTcount: A:0.52, C:0.46, G:0.01, T:0.01
Consensus pattern (34 bp):
CAACACCAACAACAACACACCAACACCAACACAC
Left flanking sequence: Indices 83558 -- 84057
TTACTAGCAAAATGAGTATTACATAATGTATTATGTTAAAGGATAGAACGGTCCCCTCACCTTAA
TCTATACGACGGGACTATACGACGACGGTTCACTAATTGTGGTAGAAGACTTTACGAGCATTACA
TAACCGCTTTACGAGCTGACCTAATATACTGGTGCGGCTCAAAAATACATGTGATACTGATCACG
TGACTGCACTGTTGATACCGTAGATAGCGTTGATTATAGGGAACCTGTATATATCCTATATACTA
CAATATAAGCCCCCAGTACGGCTTCAGGGTAGCCCGCTCATGCAGGCTACCCCGAAGGCGCACCC
AGTGCTTAACTAAATAATTATAGAAACCCGGATTGGATACCAATGGCACCACCAACAGGGGGAAA
AAACGGTGCCAATAGCACCCGATCCAACGAATTGAATCGGATACCATTGGCACCACCAACAGGGG
GAAAAAGGAGCCATTGGCATCCAACCCTTCAACAGCGACCAGCAA
Right flanking sequence: Indices 84193 -- 84692
AAAAGAGGGGGTGGCACCACTAGTACTTTCTGATATCGTCTCCCATATGGCTAAGGAAGCGAAGC
CCAGAGGCTTGCAACTCCCCGCACCGACCACGGGATGGTTCTGTGGCGATACCGCCCATCCTGAC
GCTAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAACTGCACATGT
CAGGACTGTTCGAGGACCCGTAGCTGGTAGGTGGCCAACCTACCAGTAACAAACCCTGTCACCAG
ACCAACAGACGCTGAGCCATTACCATGGCGCGAAGCGCCAACGGATAATGACCCAGCCGAGAGAC
TCCATCAGAAGTACCAGCAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAACGACAAGCT
TTGATTTGCCTCCTTGAGGGGATTTTTTTCCCCCATCTTCTTTGATTTTCTCTTTGCTTGTCGCT
GCCTTCCGTAGTAACGGGAAAGGAGCCGGGCTTGCAGGGTGCAAG
Found at i:84107 original size:20 final size:19
Alignment explanation
Indices: 84082--84183 Score: 98
Period size: 21 Copynumber: 4.9 Consensus size: 19
84072 ACAACAACAT
84082 CACCAACACCGACACACCA-A
1 CACCAACACC-A-ACACCACA
*
84102 CACCAAACACCAAACACCAAA
1 CACC-AACACC-AACACCACA
84123 CACCAACACACCAACACCAACA
1 CACC-A-ACACCAACACC-ACA
84145 CACCAACACCAACACCAACA
1 CACCAACACCAACACC-ACA
*
84165 CCACCAACATCAACACCAC
1 -CACCAACACCAACACCAC
84184 CAACACCAAA
Statistics
Matches: 74, Mismatches: 3, Indels: 10
0.85 0.03 0.11
Matches are distributed among these distances:
20 27 0.36
21 36 0.49
22 11 0.15
ACGTcount: A:0.49, C:0.49, G:0.01, T:0.01
Consensus pattern (19 bp):
CACCAACACCAACACCACA
Left flanking sequence: Indices 83582 -- 84081
AATGTATTATGTTAAAGGATAGAACGGTCCCCTCACCTTAATCTATACGACGGGACTATACGACG
ACGGTTCACTAATTGTGGTAGAAGACTTTACGAGCATTACATAACCGCTTTACGAGCTGACCTAA
TATACTGGTGCGGCTCAAAAATACATGTGATACTGATCACGTGACTGCACTGTTGATACCGTAGA
TAGCGTTGATTATAGGGAACCTGTATATATCCTATATACTACAATATAAGCCCCCAGTACGGCTT
CAGGGTAGCCCGCTCATGCAGGCTACCCCGAAGGCGCACCCAGTGCTTAACTAAATAATTATAGA
AACCCGGATTGGATACCAATGGCACCACCAACAGGGGGAAAAAACGGTGCCAATAGCACCCGATC
CAACGAATTGAATCGGATACCATTGGCACCACCAACAGGGGGAAAAAGGAGCCATTGGCATCCAA
CCCTTCAACAGCGACCAGCAACAACAACAACAACAACAACAACAT
Right flanking sequence: Indices 84184 -- 84683
CAACACCAAAAAAGAGGGGGTGGCACCACTAGTACTTTCTGATATCGTCTCCCATATGGCTAAGG
AAGCGAAGCCCAGAGGCTTGCAACTCCCCGCACCGACCACGGGATGGTTCTGTGGCGATACCGCC
CATCCTGACGCTAGATTGCACCTCCCACCTCCCGGCCCGTCGGCCATCGAGTAGAAGCGTGCAAC
TGCACATGTCAGGACTGTTCGAGGACCCGTAGCTGGTAGGTGGCCAACCTACCAGTAACAAACCC
TGTCACCAGACCAACAGACGCTGAGCCATTACCATGGCGCGAAGCGCCAACGGATAATGACCCAG
CCGAGAGACTCCATCAGAAGTACCAGCAGCACCGAGGCTGTGGTGAGCAAGTATCACCACGCTAA
CGACAAGCTTTGATTTGCCTCCTTGAGGGGATTTTTTTCCCCCATCTTCTTTGATTTTCTCTTTG
CTTGTCGCTGCCTTCCGTAGTAACGGGAAAGGAGCCGGGCTTGCA
Found at i:87661 original size:9 final size:9
Alignment explanation
Indices: 87647--87674 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
87637 CCATCGATAG
87647 CACTGACAA
1 CACTGACAA
87656 CACTGACAA
1 CACTGACAA
87665 CACTGACAA
1 CACTGACAA
87674 C
1 C
87675 CAGTACCTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.43, C:0.36, G:0.11, T:0.11
Consensus pattern (9 bp):
CACTGACAA
Left flanking sequence: Indices 87147 -- 87646
AAGGCCATCGTGGTACGCGTTTGGTGCACGCGCGCTGATGAGCAATGTAGGGTGGATGATGGCGG
TGAAAAATGGGTGGGGTGTGTGAGAGGGTAGAGAGGGTGGGTGTGAGAGAGAGTGGTGGGGATGA
GATGATGGTGTGTAGGCATTGATGGGTTACTGCTTAGCGCGTTGATTTGGTGAGATGAGGAGAGT
GAGTTTAGTAGGGAACCATTTGCGGTTGGCGGGGGAAGCGTAGCAGCCGGAAGAGGAACAATAGA
CTGGGCATGGACATTCATTGACACAGGTCAATTGACGGTAGCATGGATACTTGACTTGTAGCGCC
CAGTAGGTCACACCCCGTTGTGCTCGTAGAAAAGGTAAGGTGCATACATGGCGCTCATTGGACAC
CGAAACCATCATGGATCTCTATAATATAAAAGACGAGAGACCGTGTTTCAACCCCCCATACGTAG
GTTATTCATTTTAACGTGTTGTCGATGTGATGCGCCCATCGATAG
Right flanking sequence: Indices 87675 -- 88174
CAGTACCTTCACCATTTTCAGAATGTAAACCAGCCTTACAGAACAAAGCGGTCAGTGTAACTACT
ACACTAACGGCGATAACGGCGACACTGACAGCTCACATGAAATTCTAGGTTCAACGGCCTGTCAA
GATTATTTTCGCGGTTCCAGACCAAAAAGCACCACCAGGAGCCCTACCCACACCGGACCCCAGTA
TCCCACCAAACAAACAACCTTACACTACGAACTAAAACACTACGACCTTCCACCAACGCCCGTTC
CCCAAACCAACCCATTCTCTCCCATTTTCTCACCCATTACCCCATTTCTTACCGTTCTCACCTTT
CTACCCATTTTCCACCCATTTTTGCAGCCATTCGCGTTTTCCCTGCATCGCTCAACCACACCATG
CGTGCTTATTCTGCTCCCGGCAAGGCGCTCTTAGCGGGCGGGTACCTTGTGATTGACCCCCAGTA
CAGTGCCTATGTCACGGCGCTCTCTGCGCGGATGCACGCTACCGT
Found at i:89790 original size:6 final size:6
Alignment explanation
Indices: 89779--89804 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
89769 GCCGCTGCTG
89779 ACGACC ACGACC ACGACC ACGACC AC
1 ACGACC ACGACC ACGACC ACGACC AC
89805 TCGGTGTCTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.50, G:0.15, T:0.00
Consensus pattern (6 bp):
ACGACC
Left flanking sequence: Indices 89279 -- 89778
CTCGGCTAGCGACAGCCGGTTGAGCTCCGTGTCGTGGTTGCATCTTGAGGAGGAGGCTGCGGGGC
TCGTAGTGGAAGATCCCGGTGCTTACCAATTTGCATAGATATAGTGGTTATATTTCTTGGCCAGC
CAAGAAAAATCGCGGCAACCGTTACGGTTGTTGCAGACCAGCCGCGTAGAAATAGAGAATAGACG
GGAGTAGCGGGCCATTGCGACACCGTGTGACGATAGGGGTAGTGGGGCACCCCAGGTGGCGGTTT
GTGTAGTCTCGGTTCTTTTTTTGGGGCGGTCTGGGCTTTTTGCAGCCAGATCTGTGGCATTGGTT
GCAACATGCACGGTGCCATTCAGCCTTTCCATTGACGACACAAAATTGGCAGCTCGATAAACTGG
GGACGGGGACAAACACTATAAATACGGGGGGTCTGCCAAGTAATTCTCTACTATCACAATGCAAT
TTCTTCTTCCTCTCGGTGTTCTTTTGGCTGTCGTCGCCGCTGCTG
Right flanking sequence: Indices 89805 -- 90304
TCGGTGTCTGGCGAGCACGACCACGACCACGCCCACGAGACTGGCGCCCACGACCACGCTCACGA
GGCTGAGGCTTCTGGTGAGGCTCACGACCACGACCACGAGGAAGACCACAAGCACTCCTCGGAGG
AGGCCCAGGTCACCGGTGACCACGACCACGACCACAAGCACGAGGACGAGCACGCCGACGCTTCT
GGCAGCCACACCCACGACCACGACCACGACGACCACAAGTCCGAGAACGCTGCTCCCCTGGTTGC
CACCGGTGGTGCCGGCTTGTTGAAGGTTGGCTCGTTGCTCGTCGGCGCTGGTGTCGTCGGCGCGT
TGATCTAAGGATTGTATAGTGGACAGGGGTGTTTAACTTATATAATTATTGGACAGACGTTCTTT
CAATTGGTAGTTGACGGGTAAGGCTCGTTTCGTATGCAGAGGATTGGCCTCGTCTATGCATAGAA
GAATACGGCATTAGGCTCCTTGGGCTAAAAAATAGGCGAGTGGAC
Found at i:89857 original size:33 final size:36
Alignment explanation
Indices: 89780--89862 Score: 100
Period size: 36 Copynumber: 2.4 Consensus size: 36
89770 CCGCTGCTGA
* * *
89780 CGACCACGACCACGACCACGACCACTCGGTGTCTGG
1 CGACCACGACCACGACCACGACCACACGGAGACTGG
*
89816 CGAGCACGACCACGACCACG-CC-CAC-GAGACTGG
1 CGACCACGACCACGACCACGACCACACGGAGACTGG
*
89849 CGCCCACGACCACG
1 CGACCACGACCACG
89863 CTCACGAGGC
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
33 18 0.44
34 2 0.05
35 2 0.05
36 19 0.46
ACGTcount: A:0.24, C:0.45, G:0.25, T:0.06
Consensus pattern (36 bp):
CGACCACGACCACGACCACGACCACACGGAGACTGG
Left flanking sequence: Indices 89280 -- 89779
TCGGCTAGCGACAGCCGGTTGAGCTCCGTGTCGTGGTTGCATCTTGAGGAGGAGGCTGCGGGGCT
CGTAGTGGAAGATCCCGGTGCTTACCAATTTGCATAGATATAGTGGTTATATTTCTTGGCCAGCC
AAGAAAAATCGCGGCAACCGTTACGGTTGTTGCAGACCAGCCGCGTAGAAATAGAGAATAGACGG
GAGTAGCGGGCCATTGCGACACCGTGTGACGATAGGGGTAGTGGGGCACCCCAGGTGGCGGTTTG
TGTAGTCTCGGTTCTTTTTTTGGGGCGGTCTGGGCTTTTTGCAGCCAGATCTGTGGCATTGGTTG
CAACATGCACGGTGCCATTCAGCCTTTCCATTGACGACACAAAATTGGCAGCTCGATAAACTGGG
GACGGGGACAAACACTATAAATACGGGGGGTCTGCCAAGTAATTCTCTACTATCACAATGCAATT
TCTTCTTCCTCTCGGTGTTCTTTTGGCTGTCGTCGCCGCTGCTGA
Right flanking sequence: Indices 89863 -- 90362
CTCACGAGGCTGAGGCTTCTGGTGAGGCTCACGACCACGACCACGAGGAAGACCACAAGCACTCC
TCGGAGGAGGCCCAGGTCACCGGTGACCACGACCACGACCACAAGCACGAGGACGAGCACGCCGA
CGCTTCTGGCAGCCACACCCACGACCACGACCACGACGACCACAAGTCCGAGAACGCTGCTCCCC
TGGTTGCCACCGGTGGTGCCGGCTTGTTGAAGGTTGGCTCGTTGCTCGTCGGCGCTGGTGTCGTC
GGCGCGTTGATCTAAGGATTGTATAGTGGACAGGGGTGTTTAACTTATATAATTATTGGACAGAC
GTTCTTTCAATTGGTAGTTGACGGGTAAGGCTCGTTTCGTATGCAGAGGATTGGCCTCGTCTATG
CATAGAAGAATACGGCATTAGGCTCCTTGGGCTAAAAAATAGGCGAGTGGACTGGTGGGGTTTTG
GGTCACAAACTTGGCTACAACCCGACGCCTCCGTGATCTGAACCC
Found at i:90381 original size:14 final size:14
Alignment explanation
Indices: 90362--90395 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
90352 GATCTGAACC
90362 CGGCTTTGTGGATA
1 CGGCTTTGTGGATA
90376 CGGCTTTGTGGATA
1 CGGCTTTGTGGATA
90390 CGGCTT
1 CGGCTT
90396 GTGTCACTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.12, C:0.18, G:0.35, T:0.35
Consensus pattern (14 bp):
CGGCTTTGTGGATA
Left flanking sequence: Indices 89862 -- 90361
GCTCACGAGGCTGAGGCTTCTGGTGAGGCTCACGACCACGACCACGAGGAAGACCACAAGCACTC
CTCGGAGGAGGCCCAGGTCACCGGTGACCACGACCACGACCACAAGCACGAGGACGAGCACGCCG
ACGCTTCTGGCAGCCACACCCACGACCACGACCACGACGACCACAAGTCCGAGAACGCTGCTCCC
CTGGTTGCCACCGGTGGTGCCGGCTTGTTGAAGGTTGGCTCGTTGCTCGTCGGCGCTGGTGTCGT
CGGCGCGTTGATCTAAGGATTGTATAGTGGACAGGGGTGTTTAACTTATATAATTATTGGACAGA
CGTTCTTTCAATTGGTAGTTGACGGGTAAGGCTCGTTTCGTATGCAGAGGATTGGCCTCGTCTAT
GCATAGAAGAATACGGCATTAGGCTCCTTGGGCTAAAAAATAGGCGAGTGGACTGGTGGGGTTTT
GGGTCACAAACTTGGCTACAACCCGACGCCTCCGTGATCTGAACC
Right flanking sequence: Indices 90396 -- 90895
GTGTCACTTGCTCACGGTCCACGAGCGTATTTCGGAAGTTTGCGAGATCTGTGACATTGCATCAC
CTGTCAACTTACTCATTAGGCGTTTCGTGGCCCGTCCAACAGTCACATGAAACTGGTAGAATTGC
ACCACCCAAAATGTCCAAATAGGGGTTCGATAGGGGCTACCTCAATGGTACTGAAAACGACCTGA
CCCTACAATTGACACTACGACGGCTATCAGCCACAGTTTCCGCCTCTCCTTCGACACTCTCCGCC
CTGTCCCCCGCATTGATCTGCCTCACGTGCTTCCATTGTGTTCCACCGTGGGCCTACCCCTCGCA
TACCGGCATTTAGCACAGGCTGGTCGGCTTGTTTGGCCGAGCTCACGTGATGTCCTCGGAGAGAG
ATCGGCCGGGGACAGAAGCTCGACACGGAACGGGTAGACTCCCAGTAGAACTGCTGAGCCACACC
CTCCGCCCACGGCCCGTCTCCGTCCCGGGTTCCCCACACTTTCCC
Found at i:97955 original size:22 final size:22
Alignment explanation
Indices: 97908--97958 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
97898 TGTGCTGTGT
97908 GGTGTGGTGGTGTGGTGGTAGC
1 GGTGTGGTGGTGTGGTGGTAGC
* **
97930 GGTGTGTTGG-GTGGTTTTAGC
1 GGTGTGGTGGTGTGGTGGTAGC
97951 GG-GTGGTG
1 GGTGTGGTG
97959 TAGTGGGTGG
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
20 5 0.20
21 11 0.44
22 9 0.36
ACGTcount: A:0.04, C:0.04, G:0.57, T:0.35
Consensus pattern (22 bp):
GGTGTGGTGGTGTGGTGGTAGC
Left flanking sequence: Indices 97408 -- 97907
TTCTCCTCGTCCATCACCTGCACCTGGCGGGTCTTGCGCTTGAAGAAGTTGCGCTGCTTGCGTCT
TCCCCCGCCGTCGGGGGCCACCTGGGACTCGTCCATCTCGTCGGGGTTGTTTTCCAAGATTTTGG
CGTCGGGGTTTTCCCGTTTGCGCTCGTCGATCTCCTTGCGACTCAACTGGAACTGGATATTGCGG
GGGTCCTTACGGTGGAGCCGGACGGGCTTCAGGAAGTCCTTGACGATGTCCACGGGCTTGTTGTT
CTGGAACTTCATGATGTGGCAGTTGGTGTCGGCGAGCTCCTGGGCCGAGCAGCACTCGAGTGGAA
TCTCCTGCCACTCGGTGCCGGGCCTGGGTGCCTGCGGGGCGGCCGGTTGCTGGGACATGGTGGTG
TTTGGTGCGGCTTGAAAAATGATGAGGAGGTGATCGCGGGAAGGATGATGTGGAGGGGTGGGTTA
AATGGTGGTAAGGGTGGGGGCAGTGTGGTGGGTGGTGTGCTGTGT
Right flanking sequence: Indices 97959 -- 98458
TAGTGGGTGGGTTGGTGTGGCGTGTGGCTGGAGTTTGGAGGTCTATGTAGGTATGGGAGTGATGA
TCGCGTGAAAACGTAGGATAGGCAACGAGAGGGAAGGTGGAAGTAGAGGCAGGGTGGCGAATGGA
GTGGTTCGTTGTACGTGGGCTTTAGGTTCTGTGTGTTGTGTTTGCAATTGGTGTGGGTGGTGTAG
ACGTGGAGTTGACGGGGTGTGGGTTAACCGGAGTGATGGTGAGTGGGATGCTGTGCTATTGGAGA
CAAAAGAACTACTAGTTGTCTGTTTTCAAGCATGAGTATGTAATTGAGGTGCTATTATTAAGTTG
ATGGTGCCCCGATTTGCTCTGCCTTCGTCTTCAGCGATATGGTGAAGGGTACAGTATTCCTCGCA
AAAGACCCTGGCAAAAGACCTTGCAAAAGATGTGCACTCGATACCTAAATACACCCCAGGTAGAG
ATCTGAAAACATGTGTGGCTTGATACACGTTTGGTACACGTTCGG
Found at i:98376 original size:12 final size:13
Alignment explanation
Indices: 98346--98378 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
98336 AGTATTCCTC
98346 GCAAAAGACCCTG
1 GCAAAAGACCCTG
*
98359 GCAAAAGA-CCTT
1 GCAAAAGACCCTG
98371 GCAAAAGA
1 GCAAAAGA
98379 TGTGCACTCG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.45, C:0.24, G:0.21, T:0.09
Consensus pattern (13 bp):
GCAAAAGACCCTG
Left flanking sequence: Indices 97846 -- 98345
TGTGGAGGGGTGGGTTAAATGGTGGTAAGGGTGGGGGCAGTGTGGTGGGTGGTGTGCTGTGTGGT
GTGGTGGTGTGGTGGTAGCGGTGTGTTGGGTGGTTTTAGCGGGTGGTGTAGTGGGTGGGTTGGTG
TGGCGTGTGGCTGGAGTTTGGAGGTCTATGTAGGTATGGGAGTGATGATCGCGTGAAAACGTAGG
ATAGGCAACGAGAGGGAAGGTGGAAGTAGAGGCAGGGTGGCGAATGGAGTGGTTCGTTGTACGTG
GGCTTTAGGTTCTGTGTGTTGTGTTTGCAATTGGTGTGGGTGGTGTAGACGTGGAGTTGACGGGG
TGTGGGTTAACCGGAGTGATGGTGAGTGGGATGCTGTGCTATTGGAGACAAAAGAACTACTAGTT
GTCTGTTTTCAAGCATGAGTATGTAATTGAGGTGCTATTATTAAGTTGATGGTGCCCCGATTTGC
TCTGCCTTCGTCTTCAGCGATATGGTGAAGGGTACAGTATTCCTC
Right flanking sequence: Indices 98379 -- 98878
TGTGCACTCGATACCTAAATACACCCCAGGTAGAGATCTGAAAACATGTGTGGCTTGATACACGT
TTGGTACACGTTCGGTATGATCCCATATCGTCTCTGCATCCGGAATGCAACCTGGGACAGTTTAG
CCTGTGCTCGCTCGTTCCAGACAACATTGAACCCTGAAACCGTGTCAAACCCTTAGAGAAACAGC
CCGTTCTTTGTGTCACCCCCTTTGGGTCGCGAATCATTGCACTCGTTTATTACGTGCGATGACGA
TGCTGAACTCAAACGCGTTCGTGGGTTTGATCCGCAAATTGGTAAACATCAGGAACAGAGTATTA
AAAGACATGGGGGGTAATGTGAGACCACCTGCCTCCCTCCTGCAGCCTCGTATATCCACCTTTCG
TCTAGTCACCAGAAGCTTGGTGTCAGGCACGATGCTTGCCCTTGCGTCTTAAGCTCGTATCATTA
CCGTTTCGAGGTCCAAATTCCGAGTGGTTTCGTTGAGGTCTCTTG
Found at i:101856 original size:12 final size:12
Alignment explanation
Indices: 101841--101895 Score: 53
Period size: 12 Copynumber: 4.8 Consensus size: 12
101831 GAAAAAGGCC
101841 AAGGAGGAACCG
1 AAGGAGGAACCG
101853 AAGGAGG-A--G
1 AAGGAGGAACCG
** *
101862 AAGGAGGCGCCT
1 AAGGAGGAACCG
*
101874 AAGGAGGAACCC
1 AAGGAGGAACCG
101886 AAGGAGGAAC
1 AAGGAGGAAC
101896 AGCCCAATGG
Statistics
Matches: 35, Mismatches: 5, Indels: 6
0.76 0.11 0.13
Matches are distributed among these distances:
9 8 0.23
11 1 0.03
12 26 0.74
ACGTcount: A:0.40, C:0.16, G:0.42, T:0.02
Consensus pattern (12 bp):
AAGGAGGAACCG
Left flanking sequence: Indices 101341 -- 101840
CTTTACCTAAAGTGATACAAGTAGCTCCAGATGAAAATGACAAGCAGTGCGATAATTGGGAGCAC
GCTCATACAATCCAATGTGAGTTTTCTCCAGGGATCTTCTGTTTCATCCCCAACCTCTCGTAGAC
TACCCCGTAATGTATGACCTACCGAATTGGGTGATTCCAACCGGGGAAGCCCCGCACGGCTAACG
CTACCAAACACTACCACACAGCCAACCCCGTACATTTACAGCCCAACCTACACGCCACTTCTTCC
GTTTTTAAGCCTCCTTCCCCTCGTTCTCCAGCCAGCCTCCCCGCCTCACCACCTTTTCGACGCGC
GATTTTGGACCCCTCTCACGAACCCTCCCACCACCCACCCCCACGAACACGATCAATGGCTGAAT
TGAGACGCTCGACGCGCTCCGCTACCCAGCAGTCGACCCAGGCTCTGACCGCAGCCACGAAGAAG
CGCGTGAACCCCGACACCAAGGGCAAAAAGGCCGTGAAAAAGGCC
Right flanking sequence: Indices 101896 -- 102395
AGCCCAATGGGGAAAGAGATGGCGACGAAGACGAGGACGCCTCCGAGCTCGAGGTGGGCGACGCC
ATGCCCGCCATCACCGTCAAGGACGAGAACGACAACGACGTAGACCTCCAGAAAGTGGTCAACTC
CACCAAGTACGTGGTGATCTTTGCCTACCCCAAGGCCAACACCCCTGGGTGCACCCGCCAGGCCA
AGGGGTTCCGCGACGACTACGAGTTCTACAAGGAGCACGGGGTCAAAGTGTACGGGTTGTCCGCG
GACCTGCCCAAGTCGCAGACGTCGTTCATTTCCAAGTACGACTTGCCGTACCCGTTGTTGCTGGA
CCCGAAGCGGGTGTTGGTTGGTGTGTTGGGCGCGAAAAAGACCCCCCAGAAGGGGGTCAAGCGGT
CGCACTGGGTGTTTGCCGACGGGAAGTTGGCCGACAAACGCGTGACGATCTCGCCCGAGAAGAGC
GTGGAGGAGGCGAAAAAGTGGATTGAGAAGGCGATGGAGTAGCCC
Found at i:104800 original size:15 final size:15
Alignment explanation
Indices: 104780--104871 Score: 105
Period size: 15 Copynumber: 6.1 Consensus size: 15
104770 CTGGGGATGA
*
104780 CACTGAACACTTTGT
1 CACTGAACACTCTGT
*
104795 CACTGAACACACTGT
1 CACTGAACACTCTGT
104810 CACTGAACACTCTGT
1 CACTGAACACTCTGT
* *
104825 CACTGAACACCCTAT
1 CACTGAACACTCTGT
* *
104840 CACTGATCACTCTAT
1 CACTGAACACTCTGT
*
104855 CACCT-CACACTCTGT
1 CA-CTGAACACTCTGT
104870 CA
1 CA
104872 TCACCAACAC
Statistics
Matches: 66, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
15 64 0.97
16 2 0.03
ACGTcount: A:0.28, C:0.36, G:0.10, T:0.26
Consensus pattern (15 bp):
CACTGAACACTCTGT
Left flanking sequence: Indices 104280 -- 104779
GGGCGATCTACCGCGAGCGGGGCCTCAAGGGGTTTACCCGGGGGTTTGTGCCGTCGATCTTGCGG
TCGTTCCCGGCGAACGCCGCGGCGTTGGCGGCTTTCGAGGCGGTGATGCGGTTCTTGCACTAGGG
TTAGAGCAATGGTGACACTTCGCTGGTTCGTTATAGACTATAGATTCAGAATAGAAGAAACATGG
AAGCGGGTTAGTGTAGTGGCAGTGAAGAGTGGACCGTGAAGCGTTAAGATAGTTAGGCGAAGGAG
CCTGTGAACGAGTGTATGAGCTGATGGTAATGCGAGAGCGTGGTAGTGAGAGATCAATGTTGAGA
TCGTTGTTGAGAACATGTATATTTAGCGTTTTATTGGTGGTTCTGACTGAAAGAGCTCTGGTTCA
CAGGGTTCTTGAAACGTGAATGGGTACCATGGTTTTGTTAGGGATACCGTACTGAACCATACGGT
GGTCAGACCTACGAAATACAGGCAAAAACTAACCCCTGGGGATGA
Right flanking sequence: Indices 104872 -- 105371
TCACCAACACTCTGTCTTTACTTTGTCATCACTCAACACTCTCCATCTCCTTCCTTACAGTTCAT
TTAATCATTGCTAGGGCTATTTACCCCTCGATCATCCCATCACTTCTCCCACGGCTTCTTGCGCT
GGCTCGCCTGCGCCTCGCTCTGTTGCTCGGGCAACACCGTGTCCGGGATCTCCTTGATCCCCGGG
ACCTCCTTCCCGGCCAAGATGAGCTCGACCACGTTCTGGTAGTTGGAACTGTAGGGGGCGGTGCC
TTCCGGGGCCTGGCTGGTGGGACCCTCTGGTGCCTGGCTGGTGGTGTCCAAGCTGGTGGCATTGG
TGCCATCGCCAATGGCCGCCTGGGTCGTCTCCCCCTCCTCAATCTCTTCAATTTGCCCGCTCTTC
TTGTAACGGTTGCCCCCCCGGGCCAACCACACCCGGTACTCGTCCAACTCCAAGATGTTCCCCGT
CTTCAGACAGAAGAAGAACACCTTGGCCTGGTCCGTCAACTGGGC
Found at i:106866 original size:28 final size:28
Alignment explanation
Indices: 106761--106922 Score: 150
Period size: 28 Copynumber: 5.9 Consensus size: 28
106751 AGATTAGTAC
* *
106761 GAAGAGAGTATAGAATATAGAT--TCAA
1 GAAGAGAGTATAGAGTATAGATAGGCAA
* * *
106787 GAGGAGA-TATAGAGTATAGGTCGGCAA
1 GAAGAGAGTATAGAGTATAGATAGGCAA
* * *
106814 AAAGAGAGTATAGAGTATAGATAGGTAC
1 GAAGAGAGTATAGAGTATAGATAGGCAA
* * *
106842 GAAGAGAGTCTAGGGTATAGGTAGGCAA
1 GAAGAGAGTATAGAGTATAGATAGGCAA
* * * *
106870 GAAGAGAGAAAAGCGTATAGATAGACAA
1 GAAGAGAGTATAGAGTATAGATAGGCAA
* *
106898 GAAGAGAGCATAGAGTATATATAGG
1 GAAGAGAGTATAGAGTATAGATAGG
106923 TTTTGTGGAT
Statistics
Matches: 106, Mismatches: 27, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
25 12 0.11
26 6 0.06
27 8 0.08
28 80 0.75
ACGTcount: A:0.44, C:0.06, G:0.31, T:0.19
Consensus pattern (28 bp):
GAAGAGAGTATAGAGTATAGATAGGCAA
Left flanking sequence: Indices 106261 -- 106760
GTACTACAAGCTGGCGGCCGACACTGTGGGCGGGGCGTTCTCGGCGGAGCTGGTGGCGTTTGTGC
CCCAGCTCGTGCTTTCGGGGGTGGTTATCCCGCTTGTGTTCTGGCTGAGGCTCCAGACGTGCCTC
TTTTTGCAGACATTCACGTTTGTGACGTTCAACAAGGTGATGACGTCGCAGTATTTCATCTGGTT
CCTTATTTTTTTGCCTGGGCTCTTGCAGGAGACCCCGATTGGGTGGGCCAAGGGCGGGGCGATGG
TGGTGGCGTGGGTGGCGACCCAGGGCGCGTGGTTGTCCCAGGCATACAACCTCGAGTTTTTGGGC
CAGCTGACGTTTGATACCACGTTGTTTTACCTGGCCATTGCGTTCTTTTTGACCAACTGCTGGAT
CGTGTGCGAGGTGATGCGGGCGGTGCCGGTGGAGACAGCTAAGAAGCGGGTGTAGGGCAGGGAGG
CAAGAGAGTATAGGCAGGAAGCGAGTATGGCGCAAAGATTAGTAC
Right flanking sequence: Indices 106923 -- 107422
TTTTGTGGATCGAAGACGGGTGGGTGGTTTTTATGTGTTTGCGAAATGGCTGCAAAATGGTCGCA
AAATGTTGCAAATGGTTGCGAAATGTTTCAAAATGGTTGCAAATGATTGCAAAGTGAGATTGCAG
GGGCAAACCGTAATGGAAAAGATGGCTAAAAGACGGGTGGAGACTGGAAAAGACAGCAAGAGTTG
CAAAAAGGAGAATCTAGAGACTCCTTGGTTTTCTTGCAGTTTCTCTACTTTTATAGGCAACTGGT
GGATAGGTCATAGACATATTGTCAATATAAAAGCACACCGAAAGTGACAACCCACCATACATCGA
AAGTGGCAACACCATTATGGCCCGTTTTGAAACCGCTTCTTGTCTTACCGCGCCCTCTGGCTCTG
CCGCTGAGGTGGCCTGGCTTGAGAAAGAACTCTACAACCACGACCGCGCCACCAAGACAATGTTG
GCGGTGTTCCGCAGGGGCCACCGCACCAACTGGCGGTGGAAACGA
Found at i:107005 original size:10 final size:11
Alignment explanation
Indices: 106961--107040 Score: 78
Period size: 10 Copynumber: 7.6 Consensus size: 11
106951 TTTTATGTGT
*
106961 TTGCGAAATGG
1 TTGCAAAATGG
*
106972 CTGCAAAATGG
1 TTGCAAAATGG
*
106983 TCGCAAAAT-G
1 TTGCAAAATGG
106993 TTGC-AAATGG
1 TTGCAAAATGG
*
107003 TTGCGAAAT-G
1 TTGCAAAATGG
*
107013 TTTCAAAATGG
1 TTGCAAAATGG
*
107024 TTGC-AAATGA
1 TTGCAAAATGG
107034 TTGCAAA
1 TTGCAAA
107041 GTGAGATTGC
Statistics
Matches: 56, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
9 4 0.07
10 26 0.46
11 26 0.46
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.28
Consensus pattern (11 bp):
TTGCAAAATGG
Left flanking sequence: Indices 106461 -- 106960
TTTTTTTGCCTGGGCTCTTGCAGGAGACCCCGATTGGGTGGGCCAAGGGCGGGGCGATGGTGGTG
GCGTGGGTGGCGACCCAGGGCGCGTGGTTGTCCCAGGCATACAACCTCGAGTTTTTGGGCCAGCT
GACGTTTGATACCACGTTGTTTTACCTGGCCATTGCGTTCTTTTTGACCAACTGCTGGATCGTGT
GCGAGGTGATGCGGGCGGTGCCGGTGGAGACAGCTAAGAAGCGGGTGTAGGGCAGGGAGGCAAGA
GAGTATAGGCAGGAAGCGAGTATGGCGCAAAGATTAGTACGAAGAGAGTATAGAATATAGATTCA
AGAGGAGATATAGAGTATAGGTCGGCAAAAAGAGAGTATAGAGTATAGATAGGTACGAAGAGAGT
CTAGGGTATAGGTAGGCAAGAAGAGAGAAAAGCGTATAGATAGACAAGAAGAGAGCATAGAGTAT
ATATAGGTTTTGTGGATCGAAGACGGGTGGGTGGTTTTTATGTGT
Right flanking sequence: Indices 107041 -- 107540
GTGAGATTGCAGGGGCAAACCGTAATGGAAAAGATGGCTAAAAGACGGGTGGAGACTGGAAAAGA
CAGCAAGAGTTGCAAAAAGGAGAATCTAGAGACTCCTTGGTTTTCTTGCAGTTTCTCTACTTTTA
TAGGCAACTGGTGGATAGGTCATAGACATATTGTCAATATAAAAGCACACCGAAAGTGACAACCC
ACCATACATCGAAAGTGGCAACACCATTATGGCCCGTTTTGAAACCGCTTCTTGTCTTACCGCGC
CCTCTGGCTCTGCCGCTGAGGTGGCCTGGCTTGAGAAAGAACTCTACAACCACGACCGCGCCACC
AAGACAATGTTGGCGGTGTTCCGCAGGGGCCACCGCACCAACTGGCGGTGGAAACGAAGCTACCA
GCGCATGGTAGGCAACGCCCGGCGCAACCGCAGCCGGATCTTGATGGCTTTGCACGCCCAGCGGT
ACTTGTTGGCTCAGGCGGACGAGAAGCAGAGTCACGACGACGACG
Found at i:107012 original size:31 final size:31
Alignment explanation
Indices: 106961--107040 Score: 90
Period size: 31 Copynumber: 2.5 Consensus size: 31
106951 TTTTATGTGT
*
106961 TTGCGAAATGGCTGCAAAATGGTCGCAAAAT-G
1 TTGC-AAATGGTTGCAAAAT-GTCGCAAAATGG
* **
106993 TTGCAAATGGTTGCGAAATGTTTCAAAATGG
1 TTGCAAATGGTTGCAAAATGTCGCAAAATGG
*
107024 TTGCAAATGATTGCAAA
1 TTGCAAATGGTTGCAAA
107041 GTGAGATTGC
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
30 8 0.20
31 29 0.71
32 4 0.10
ACGTcount: A:0.35, C:0.12, G:0.25, T:0.28
Consensus pattern (31 bp):
TTGCAAATGGTTGCAAAATGTCGCAAAATGG
Left flanking sequence: Indices 106461 -- 106960
TTTTTTTGCCTGGGCTCTTGCAGGAGACCCCGATTGGGTGGGCCAAGGGCGGGGCGATGGTGGTG
GCGTGGGTGGCGACCCAGGGCGCGTGGTTGTCCCAGGCATACAACCTCGAGTTTTTGGGCCAGCT
GACGTTTGATACCACGTTGTTTTACCTGGCCATTGCGTTCTTTTTGACCAACTGCTGGATCGTGT
GCGAGGTGATGCGGGCGGTGCCGGTGGAGACAGCTAAGAAGCGGGTGTAGGGCAGGGAGGCAAGA
GAGTATAGGCAGGAAGCGAGTATGGCGCAAAGATTAGTACGAAGAGAGTATAGAATATAGATTCA
AGAGGAGATATAGAGTATAGGTCGGCAAAAAGAGAGTATAGAGTATAGATAGGTACGAAGAGAGT
CTAGGGTATAGGTAGGCAAGAAGAGAGAAAAGCGTATAGATAGACAAGAAGAGAGCATAGAGTAT
ATATAGGTTTTGTGGATCGAAGACGGGTGGGTGGTTTTTATGTGT
Right flanking sequence: Indices 107041 -- 107540
GTGAGATTGCAGGGGCAAACCGTAATGGAAAAGATGGCTAAAAGACGGGTGGAGACTGGAAAAGA
CAGCAAGAGTTGCAAAAAGGAGAATCTAGAGACTCCTTGGTTTTCTTGCAGTTTCTCTACTTTTA
TAGGCAACTGGTGGATAGGTCATAGACATATTGTCAATATAAAAGCACACCGAAAGTGACAACCC
ACCATACATCGAAAGTGGCAACACCATTATGGCCCGTTTTGAAACCGCTTCTTGTCTTACCGCGC
CCTCTGGCTCTGCCGCTGAGGTGGCCTGGCTTGAGAAAGAACTCTACAACCACGACCGCGCCACC
AAGACAATGTTGGCGGTGTTCCGCAGGGGCCACCGCACCAACTGGCGGTGGAAACGAAGCTACCA
GCGCATGGTAGGCAACGCCCGGCGCAACCGCAGCCGGATCTTGATGGCTTTGCACGCCCAGCGGT
ACTTGTTGGCTCAGGCGGACGAGAAGCAGAGTCACGACGACGACG
Found at i:108297 original size:27 final size:26
Alignment explanation
Indices: 108266--108387 Score: 99
Period size: 27 Copynumber: 4.6 Consensus size: 26
108256 TCTCCACCCG
*
108266 TTCCCTTCTTGCGTAACCTCCCG-TGTT
1 TTCCCTTCTT-CGTATCCTCCCGAT-TT
108293 TTCCCCTTCTTCGTATCCTCCCGATTT
1 TT-CCCTTCTTCGTATCCTCCCGATTT
* *
108320 CTCCCCTCTTTCGTATCCTCCC-A-TT
1 TTCCCTTC-TTCGTATCCTCCCGATTT
* *
108345 TTCCCTTCCTTCGCATCCTCTCG-TATT
1 TTCCCTT-CTTCGTATCCTCCCGAT-TT
*
108372 CTCCCTTCTTTCGTAT
1 TTCCCTTC-TTCGTAT
108388 TCTACCTTCT
Statistics
Matches: 78, Mismatches: 9, Indels: 16
0.76 0.09 0.16
Matches are distributed among these distances:
25 18 0.23
26 8 0.10
27 43 0.55
28 9 0.12
ACGTcount: A:0.07, C:0.41, G:0.08, T:0.43
Consensus pattern (26 bp):
TTCCCTTCTTCGTATCCTCCCGATTT
Left flanking sequence: Indices 107766 -- 108265
GACTAGAGCATGCTTTGACTGAACTCCAACGAGATTACCTTCACTACTACAGGGTCAAGAAGAGC
TTGTTGCTTGGTCTGCTTCAAAGAATCAAACAACTTGACACTCGTGCAAATGTTTTAAAGCGAGC
GGAGTCTTTTTCCAGGCTGATGGAATTCAAGATTGTGGATTTTTACTATCATAAGAGCGTTATGA
AAGCATTAAAGGAGTTGTACGCGGACTGCCACCGGGAAGTTGCCAAGAGTGAGGCCACTGTTGGA
AAGGAAGAGTGACTGTGTGGTGTAAAGCAACAAATATGAAGAATACAAGACATAAAGTGTAGATA
ACTTAAGAATTGGCTATGGCAAAAGAATATACCCTAGACGGGTTGCTGGTCTAGGGTTGCAATAC
CATAGTACACTGGCCTACCCTGAGTGGATTGCCAGTAGTAACATCTCAAGAGAGAACTTAGACTT
CATTCGATTCTTTCTCTCACTTCTCACTTCTTAGATCTCCACCCG
Right flanking sequence: Indices 108388 -- 108887
TCTACCTTCTTTCGTATTCCCGCGTCTTCTCTCTCCTCACCAATCCACTTTCCTCTTTCCTCCTC
TCGTCCTCTTTCCTCCTCCGTTTTCCTCCCTTCTCCTCTCATGTCACCTGCAAAATAATTGTCGC
GACGGACAGTTGCCCGATCGGGACACCCGACCACTATACAAACACCCAATCACCCTCTTCCCTTC
CACCCTCTGTCTCAGTTTCTTTTCTATCCATTACAGTATACACTATATTAACAACTCCACCGCTT
ACTGCGAGGCGGCACGCAAAGAAGCGGCTCTGGCCTTCTTGACCTGGGTGTGCTCCTTTCTCTCC
TGCAATCTCTTGGCCAACAACTGGGCGTACTCGTTGGCCAAGTCGCGCTGGTGCTGGGCGTTCTT
GATCTTCTTCTCCTTCTCCTGTCTCTTGCGCTGCAAACGCTGGGGGGTGATCAATCTCTGGATCT
TGGGGGCCTTGGTGTAGGTCTTGTCACCCTTGACGATCTCGCGGC
Found at i:108415 original size:17 final size:17
Alignment explanation
Indices: 108365--108406 Score: 75
Period size: 17 Copynumber: 2.5 Consensus size: 17
108355 TCGCATCCTC
108365 TCGTATTCTCCCTTCTT
1 TCGTATTCTCCCTTCTT
*
108382 TCGTATTCTACCTTCTT
1 TCGTATTCTCCCTTCTT
108399 TCGTATTC
1 TCGTATTC
108407 CCGCGTCTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.10, C:0.31, G:0.07, T:0.52
Consensus pattern (17 bp):
TCGTATTCTCCCTTCTT
Left flanking sequence: Indices 107865 -- 108364
TTGACACTCGTGCAAATGTTTTAAAGCGAGCGGAGTCTTTTTCCAGGCTGATGGAATTCAAGATT
GTGGATTTTTACTATCATAAGAGCGTTATGAAAGCATTAAAGGAGTTGTACGCGGACTGCCACCG
GGAAGTTGCCAAGAGTGAGGCCACTGTTGGAAAGGAAGAGTGACTGTGTGGTGTAAAGCAACAAA
TATGAAGAATACAAGACATAAAGTGTAGATAACTTAAGAATTGGCTATGGCAAAAGAATATACCC
TAGACGGGTTGCTGGTCTAGGGTTGCAATACCATAGTACACTGGCCTACCCTGAGTGGATTGCCA
GTAGTAACATCTCAAGAGAGAACTTAGACTTCATTCGATTCTTTCTCTCACTTCTCACTTCTTAG
ATCTCCACCCGTTCCCTTCTTGCGTAACCTCCCGTGTTTTCCCCTTCTTCGTATCCTCCCGATTT
CTCCCCTCTTTCGTATCCTCCCATTTTCCCTTCCTTCGCATCCTC
Right flanking sequence: Indices 108407 -- 108906
CCGCGTCTTCTCTCTCCTCACCAATCCACTTTCCTCTTTCCTCCTCTCGTCCTCTTTCCTCCTCC
GTTTTCCTCCCTTCTCCTCTCATGTCACCTGCAAAATAATTGTCGCGACGGACAGTTGCCCGATC
GGGACACCCGACCACTATACAAACACCCAATCACCCTCTTCCCTTCCACCCTCTGTCTCAGTTTC
TTTTCTATCCATTACAGTATACACTATATTAACAACTCCACCGCTTACTGCGAGGCGGCACGCAA
AGAAGCGGCTCTGGCCTTCTTGACCTGGGTGTGCTCCTTTCTCTCCTGCAATCTCTTGGCCAACA
ACTGGGCGTACTCGTTGGCCAAGTCGCGCTGGTGCTGGGCGTTCTTGATCTTCTTCTCCTTCTCC
TGTCTCTTGCGCTGCAAACGCTGGGGGGTGATCAATCTCTGGATCTTGGGGGCCTTGGTGTAGGT
CTTGTCACCCTTGACGATCTCGCGGCGCACAACGTACTCACGGAC
Found at i:110945 original size:28 final size:27
Alignment explanation
Indices: 110906--110978 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 27
110896 CACCCTACCA
* *
110906 CTCCTCTTCTCGTCCCCCTCCCTTCTCT
1 CTCCTCTCCTCGTCCCCCTCCC-TCTCG
*
110934 CTCCTCTCCTCGTCCCACTTCCCTCTCG
1 CTCCTCTCCTCGTCCC-CCTCCCTCTCG
* *
110962 CTCCTCCCCTCATCCCC
1 CTCCTCTCCTCGTCCCC
110979 ACTGTCTCCC
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
27 1 0.03
28 33 0.85
29 5 0.13
ACGTcount: A:0.03, C:0.60, G:0.04, T:0.33
Consensus pattern (27 bp):
CTCCTCTCCTCGTCCCCCTCCCTCTCG
Left flanking sequence: Indices 110406 -- 110905
AAGTTGATCAGATGCTTTTAACGTTGCACTCGTCACGCACGCCATCGTGTCTTTCGAATAATGTG
CTATGAAAGTGGCTCATAGATATTGACCCTGGCATCACCGAGTCTTCAACGTTGCTTTTTACTTG
GTCAAATTCACTAAGCTTCTTGTTTGACCCTACCCAATCTTCGCAATACTGGCTATGTCTCATTT
GGAGTGTCTTGAACTGAATCACAATTTAACTACAGTGTGTTTCGGTTCTTTGTCACAGTACTGAG
GCTCTTTTTCCACGGGTATACAATTAGCAATATCCAACTCAACGTCATAGTCTGAACGGATGCAA
ATTATTTCAAAGAATCCCTACTTAAAAGCTGGTATCAATTCCGGCTGTCGACGTTTCTGCTGGTC
TACACCATAGATCAATATCCAGTAGCCCTATGCAATGGCTAACCCTACCATTCGAACCACTCCCA
CCAACTCTCCACACGATCCGCTTGTTCTTTAAAATCACCCTACCA
Right flanking sequence: Indices 110979 -- 111478
ACTGTCTCCCTCTCCTCCCCCTTCTCTCCCCCCTTTCCCCTTTCCCTTTTCCCCTTTTCTCTAAA
TATAGCACAAGTTGCTAAAAATACCCCAAACCATCTCAACGGCTGCCAACGACGATTTAGCCGGC
TTCGACCCCAGCCCACGTCAAAAGCAATCCACAAAATAGAAGCTTTGAACAATCTGTGTGTAAAC
CAACCAAACAAACACCCACCCAAAACTACAACACAACCACCCCAACTATTCAAACACTCTGTATT
ACCTAATTACACTGGAAACCACAACTAAAACAACTAACAACCACCTCCTTTCATCGCATTGCATT
ACTACTTCTCCTTGTCACTATTAAAACTGCTGAACTGGAGCGGCAGCGGGAACAGGTCGCGGTTC
TGCACCGCCTGCACCGTGCGCCCGAAGTTCTGGAAGGTTGCCAGGTTGGGGAACGCCAGCGGCGG
CCCCACCAGCAGCGCCAGTAGTGGGGGCGGCGGCGGCGCCGGGCC
Found at i:111966 original size:18 final size:18
Alignment explanation
Indices: 111940--111974 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
111930 GACCCCGTGG
111940 CGGGCCCCGGGGGCGCGC
1 CGGGCCCCGGGGGCGCGC
*
111958 CGGGGCCCGGGGGCGCG
1 CGGGCCCCGGGGGCGCG
111975 GCCAGCGCCG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.00, C:0.40, G:0.60, T:0.00
Consensus pattern (18 bp):
CGGGCCCCGGGGGCGCGC
Left flanking sequence: Indices 111440 -- 111939
CAGCAGCGCCAGTAGTGGGGGCGGCGGCGGCGCCGGGCCCCCGCCCTGGGAGGAGGTGCCTCCCG
GCGGCGGCGGGTACGGGTGCAGCGTCACCGGGGTGATCCCCGTCGGTAGCTGTGGCCAGTCCTGG
GGCGCGTAGAACGCCAGCGGCAGCGGGAACAACTCGCCCAGCGCGTACTTTAGTGCCACGGGGGT
CTGCTGCTGGTCGCCGTACCGCTGGTACTGTCCCGGCTGCCCCGGCACTGCCCCCGAGAACACCT
GGTTAAGCACCGGGGTGGGCAAGATCGTCAGCGGCAGCTGCTGGGCCCCCACCGCGGGCTGGCCC
TGGTAGTACTGCGGGGCGGGGGCGGAGGCGTCCAGCGGCAGCAACAGCTGCGACTTGCCTGCGTG
GATCGGGAGCAACACCGGGGGCTTGCGCGAGTCCGGGGACCGGAACGGGGTGTAGTTGGGGTACT
TGTTCAAGTGGGGCGGCGCGAGGTTTTTCGGGGCCGACCCCGTGG
Right flanking sequence: Indices 111975 -- 112474
GCCAGCGCCGCGGTGATGGTCTTGCCCAGGTCGGGCCCCTCCTTCGGGGCGTCGGAGGGGATCTG
CACCCGGAGCACGGGGCGCTGGGGCGCCGGGGGCTGGGTCAGCACCAGCAACTGGGGCACCTCCA
GCTTCAGCCCCACCAGGTCCAGCTTCAGGTGGCGGTAGGGAATGATGGGCTGCTGGCTCACCTTG
GCGTCGGGGTCGAGCTTGGGCCGCTTGGCGTCGTGGGCCAGCGACGGCTCCAGCTCCTCCAGCAG
CTCGTCGTCGTAGGCGCCGCCCCCGGCGCCCTGGGTTAGCGGCTCGTGGAGGTAGTGCTTGCGCA
CGTAGTTGCCGTAGTTCTCGGGCCCCTTCAGCTCGTACACCTTCATCTTCTTCTGCTGGTAGGTC
AGGATGAGCTCGTCCGGGTCCACCAGCGAAAACTCGTAGATTTTTTTGTTGGACCCGACGATGAT
CACCGCGAGGTCGACCTGGCAGAGCACCGCGAGCTCGTGGGCCTT
Found at i:112637 original size:20 final size:21
Alignment explanation
Indices: 112605--112666 Score: 74
Period size: 20 Copynumber: 3.0 Consensus size: 21
112595 GCGGGGTGGG
*
112605 GAGCTACGTGGTAGCTTGGGGT
1 GAGCTAAG-GGTAGCTTGGGGT
*
112627 G-GCTAGGGGTAGCTTGGGG-
1 GAGCTAAGGGTAGCTTGGGGT
*
112646 GAGCTAAGGGTAGCCTGGGGT
1 GAGCTAAGGGTAGCTTGGGGT
112667 TTTGGTCGTA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
19 1 0.03
20 28 0.80
21 5 0.14
22 1 0.03
ACGTcount: A:0.15, C:0.13, G:0.50, T:0.23
Consensus pattern (21 bp):
GAGCTAAGGGTAGCTTGGGGT
Left flanking sequence: Indices 112105 -- 112604
GCTTCAGCCCCACCAGGTCCAGCTTCAGGTGGCGGTAGGGAATGATGGGCTGCTGGCTCACCTTG
GCGTCGGGGTCGAGCTTGGGCCGCTTGGCGTCGTGGGCCAGCGACGGCTCCAGCTCCTCCAGCAG
CTCGTCGTCGTAGGCGCCGCCCCCGGCGCCCTGGGTTAGCGGCTCGTGGAGGTAGTGCTTGCGCA
CGTAGTTGCCGTAGTTCTCGGGCCCCTTCAGCTCGTACACCTTCATCTTCTTCTGCTGGTAGGTC
AGGATGAGCTCGTCCGGGTCCACCAGCGAAAACTCGTAGATTTTTTTGTTGGACCCGACGATGAT
CACCGCGAGGTCGACCTGGCAGAGCACCGCGAGCTCGTGGGCCTTCTTGAAGAGGCCGGCCTTGC
GCTTGACGAAGGTGACGGTGCGGTTGCGGTCGTCGGTGAGCGGCTGGATCTCGATTTTTCTCCGG
CCCATGGTGGATGTGTGTTTGGGTGGGGGAGATGTGCGGGGTGGG
Right flanking sequence: Indices 112667 -- 113166
TTTGGTCGTACGCGGAGGGTACGGGGGAGGAGGTTCGGAGGGGAGGAACTCTGAACTTGGGTGTC
GGGAGGAGTCGGGAGGAGTCGGGACTCGAGATTAGGACACCGGTTAAGTCAGAGGTGGTGGTCAG
AGACTATAAGAGTCGAGACTGGATAAGTCGAGACTGGAAAAGTCAGAGAATGAGGTCAATGAAGC
TTAAGCTGTTAAAGCTGAAGCTGTCCAAAAGCTGAAACTGTTCAAAAGATGAAGCTTAGGCTGCT
CAAAAGCTGAATCTATGCTCAAGCTATGCTCAAAAGTATATCAAGCTGTGCTCAACTATGCTCTG
AACTAAGGCTCAGAAAGCTACCAATCGGTCAGAAGCACTGAGGCCAACGGGCCAACGGTCCAACA
GTGGGCAATCAGCGGTTTCGACGGCTAGCAAACAGTCGTCGAGGGGGCCCGGGAGGGGACGGGGC
GACCTTGGTCGGTGCGTGGGAGGTGCCTGTGCGGAGAGCGGCCGG
Found at i:112645 original size:10 final size:10
Alignment explanation
Indices: 112614--112666 Score: 52
Period size: 10 Copynumber: 5.3 Consensus size: 10
112604 GGAGCTACGT
112614 GGTAGCTTGG
1 GGTAGCTTGG
* *
112624 GGTGGCTAGG
1 GGTAGCTTGG
112634 GGTAGCTTGG
1 GGTAGCTTGG
* **
112644 GGGAGCTAAG
1 GGTAGCTTGG
*
112654 GGTAGCCTGG
1 GGTAGCTTGG
112664 GGT
1 GGT
112667 TTTGGTCGTA
Statistics
Matches: 32, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
10 32 1.00
ACGTcount: A:0.13, C:0.11, G:0.53, T:0.23
Consensus pattern (10 bp):
GGTAGCTTGG
Left flanking sequence: Indices 112114 -- 112613
CCACCAGGTCCAGCTTCAGGTGGCGGTAGGGAATGATGGGCTGCTGGCTCACCTTGGCGTCGGGG
TCGAGCTTGGGCCGCTTGGCGTCGTGGGCCAGCGACGGCTCCAGCTCCTCCAGCAGCTCGTCGTC
GTAGGCGCCGCCCCCGGCGCCCTGGGTTAGCGGCTCGTGGAGGTAGTGCTTGCGCACGTAGTTGC
CGTAGTTCTCGGGCCCCTTCAGCTCGTACACCTTCATCTTCTTCTGCTGGTAGGTCAGGATGAGC
TCGTCCGGGTCCACCAGCGAAAACTCGTAGATTTTTTTGTTGGACCCGACGATGATCACCGCGAG
GTCGACCTGGCAGAGCACCGCGAGCTCGTGGGCCTTCTTGAAGAGGCCGGCCTTGCGCTTGACGA
AGGTGACGGTGCGGTTGCGGTCGTCGGTGAGCGGCTGGATCTCGATTTTTCTCCGGCCCATGGTG
GATGTGTGTTTGGGTGGGGGAGATGTGCGGGGTGGGGAGCTACGT
Right flanking sequence: Indices 112667 -- 113166
TTTGGTCGTACGCGGAGGGTACGGGGGAGGAGGTTCGGAGGGGAGGAACTCTGAACTTGGGTGTC
GGGAGGAGTCGGGAGGAGTCGGGACTCGAGATTAGGACACCGGTTAAGTCAGAGGTGGTGGTCAG
AGACTATAAGAGTCGAGACTGGATAAGTCGAGACTGGAAAAGTCAGAGAATGAGGTCAATGAAGC
TTAAGCTGTTAAAGCTGAAGCTGTCCAAAAGCTGAAACTGTTCAAAAGATGAAGCTTAGGCTGCT
CAAAAGCTGAATCTATGCTCAAGCTATGCTCAAAAGTATATCAAGCTGTGCTCAACTATGCTCTG
AACTAAGGCTCAGAAAGCTACCAATCGGTCAGAAGCACTGAGGCCAACGGGCCAACGGTCCAACA
GTGGGCAATCAGCGGTTTCGACGGCTAGCAAACAGTCGTCGAGGGGGCCCGGGAGGGGACGGGGC
GACCTTGGTCGGTGCGTGGGAGGTGCCTGTGCGGAGAGCGGCCGG
Found at i:112744 original size:10 final size:10
Alignment explanation
Indices: 112729--112755 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
112719 GAACTTGGGT
112729 GTCGGGAGGA
1 GTCGGGAGGA
112739 GTCGGGAGGA
1 GTCGGGAGGA
112749 GTCGGGA
1 GTCGGGA
112756 CTCGAGATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.19, C:0.11, G:0.59, T:0.11
Consensus pattern (10 bp):
GTCGGGAGGA
Left flanking sequence: Indices 112229 -- 112728
CAGCAGCTCGTCGTCGTAGGCGCCGCCCCCGGCGCCCTGGGTTAGCGGCTCGTGGAGGTAGTGCT
TGCGCACGTAGTTGCCGTAGTTCTCGGGCCCCTTCAGCTCGTACACCTTCATCTTCTTCTGCTGG
TAGGTCAGGATGAGCTCGTCCGGGTCCACCAGCGAAAACTCGTAGATTTTTTTGTTGGACCCGAC
GATGATCACCGCGAGGTCGACCTGGCAGAGCACCGCGAGCTCGTGGGCCTTCTTGAAGAGGCCGG
CCTTGCGCTTGACGAAGGTGACGGTGCGGTTGCGGTCGTCGGTGAGCGGCTGGATCTCGATTTTT
CTCCGGCCCATGGTGGATGTGTGTTTGGGTGGGGGAGATGTGCGGGGTGGGGAGCTACGTGGTAG
CTTGGGGTGGCTAGGGGTAGCTTGGGGGAGCTAAGGGTAGCCTGGGGTTTTGGTCGTACGCGGAG
GGTACGGGGGAGGAGGTTCGGAGGGGAGGAACTCTGAACTTGGGT
Right flanking sequence: Indices 112756 -- 113255
CTCGAGATTAGGACACCGGTTAAGTCAGAGGTGGTGGTCAGAGACTATAAGAGTCGAGACTGGAT
AAGTCGAGACTGGAAAAGTCAGAGAATGAGGTCAATGAAGCTTAAGCTGTTAAAGCTGAAGCTGT
CCAAAAGCTGAAACTGTTCAAAAGATGAAGCTTAGGCTGCTCAAAAGCTGAATCTATGCTCAAGC
TATGCTCAAAAGTATATCAAGCTGTGCTCAACTATGCTCTGAACTAAGGCTCAGAAAGCTACCAA
TCGGTCAGAAGCACTGAGGCCAACGGGCCAACGGTCCAACAGTGGGCAATCAGCGGTTTCGACGG
CTAGCAAACAGTCGTCGAGGGGGCCCGGGAGGGGACGGGGCGACCTTGGTCGGTGCGTGGGAGGT
GCCTGTGCGGAGAGCGGCCGGGGTCAGTGGCGGCCGGGCGGAGGAGGTGGTGGTCGCGCGGGGAG
GTGGCGGGGAGGGTTATATTTAGAACAACACAACTGCCGGGGCAA
Found at i:112825 original size:15 final size:15
Alignment explanation
Indices: 112807--112845 Score: 60
Period size: 15 Copynumber: 2.5 Consensus size: 15
112797 AGACTATAAG
*
112807 AGTCGAGACTGGATA
1 AGTCGAGACTGGAAA
112822 AGTCGAGACTGGAAA
1 AGTCGAGACTGGAAA
112837 AGTCAGAGA
1 AGTC-GAGA
112846 ATGAGGTCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 18 0.82
16 4 0.18
ACGTcount: A:0.38, C:0.13, G:0.33, T:0.15
Consensus pattern (15 bp):
AGTCGAGACTGGAAA
Left flanking sequence: Indices 112307 -- 112806
GCCGTAGTTCTCGGGCCCCTTCAGCTCGTACACCTTCATCTTCTTCTGCTGGTAGGTCAGGATGA
GCTCGTCCGGGTCCACCAGCGAAAACTCGTAGATTTTTTTGTTGGACCCGACGATGATCACCGCG
AGGTCGACCTGGCAGAGCACCGCGAGCTCGTGGGCCTTCTTGAAGAGGCCGGCCTTGCGCTTGAC
GAAGGTGACGGTGCGGTTGCGGTCGTCGGTGAGCGGCTGGATCTCGATTTTTCTCCGGCCCATGG
TGGATGTGTGTTTGGGTGGGGGAGATGTGCGGGGTGGGGAGCTACGTGGTAGCTTGGGGTGGCTA
GGGGTAGCTTGGGGGAGCTAAGGGTAGCCTGGGGTTTTGGTCGTACGCGGAGGGTACGGGGGAGG
AGGTTCGGAGGGGAGGAACTCTGAACTTGGGTGTCGGGAGGAGTCGGGAGGAGTCGGGACTCGAG
ATTAGGACACCGGTTAAGTCAGAGGTGGTGGTCAGAGACTATAAG
Right flanking sequence: Indices 112846 -- 113345
ATGAGGTCAATGAAGCTTAAGCTGTTAAAGCTGAAGCTGTCCAAAAGCTGAAACTGTTCAAAAGA
TGAAGCTTAGGCTGCTCAAAAGCTGAATCTATGCTCAAGCTATGCTCAAAAGTATATCAAGCTGT
GCTCAACTATGCTCTGAACTAAGGCTCAGAAAGCTACCAATCGGTCAGAAGCACTGAGGCCAACG
GGCCAACGGTCCAACAGTGGGCAATCAGCGGTTTCGACGGCTAGCAAACAGTCGTCGAGGGGGCC
CGGGAGGGGACGGGGCGACCTTGGTCGGTGCGTGGGAGGTGCCTGTGCGGAGAGCGGCCGGGGTC
AGTGGCGGCCGGGCGGAGGAGGTGGTGGTCGCGCGGGGAGGTGGCGGGGAGGGTTATATTTAGAA
CAACACAACTGCCGGGGCAAATGCAGAGGGGGGCGTGAGGGGGACTTGGAGAGAACACGCGGTGC
AACAGTGCAAACTAGGGGGGAGAGGTGCCCGGGAGGTGAGGTGAA
Found at i:112894 original size:17 final size:17
Alignment explanation
Indices: 112872--112917 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
112862 TTAAGCTGTT
112872 AAAGCTGAAGCTGTCCA
1 AAAGCTGAAGCTGTCCA
* *
112889 AAAGCTGAAACTGTTCA
1 AAAGCTGAAGCTGTCCA
*
112906 AAAGATGAAGCT
1 AAAGCTGAAGCT
112918 TAGGCTGCTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.41, C:0.17, G:0.22, T:0.20
Consensus pattern (17 bp):
AAAGCTGAAGCTGTCCA
Left flanking sequence: Indices 112372 -- 112871
GCTCGTCCGGGTCCACCAGCGAAAACTCGTAGATTTTTTTGTTGGACCCGACGATGATCACCGCG
AGGTCGACCTGGCAGAGCACCGCGAGCTCGTGGGCCTTCTTGAAGAGGCCGGCCTTGCGCTTGAC
GAAGGTGACGGTGCGGTTGCGGTCGTCGGTGAGCGGCTGGATCTCGATTTTTCTCCGGCCCATGG
TGGATGTGTGTTTGGGTGGGGGAGATGTGCGGGGTGGGGAGCTACGTGGTAGCTTGGGGTGGCTA
GGGGTAGCTTGGGGGAGCTAAGGGTAGCCTGGGGTTTTGGTCGTACGCGGAGGGTACGGGGGAGG
AGGTTCGGAGGGGAGGAACTCTGAACTTGGGTGTCGGGAGGAGTCGGGAGGAGTCGGGACTCGAG
ATTAGGACACCGGTTAAGTCAGAGGTGGTGGTCAGAGACTATAAGAGTCGAGACTGGATAAGTCG
AGACTGGAAAAGTCAGAGAATGAGGTCAATGAAGCTTAAGCTGTT
Right flanking sequence: Indices 112918 -- 113417
TAGGCTGCTCAAAAGCTGAATCTATGCTCAAGCTATGCTCAAAAGTATATCAAGCTGTGCTCAAC
TATGCTCTGAACTAAGGCTCAGAAAGCTACCAATCGGTCAGAAGCACTGAGGCCAACGGGCCAAC
GGTCCAACAGTGGGCAATCAGCGGTTTCGACGGCTAGCAAACAGTCGTCGAGGGGGCCCGGGAGG
GGACGGGGCGACCTTGGTCGGTGCGTGGGAGGTGCCTGTGCGGAGAGCGGCCGGGGTCAGTGGCG
GCCGGGCGGAGGAGGTGGTGGTCGCGCGGGGAGGTGGCGGGGAGGGTTATATTTAGAACAACACA
ACTGCCGGGGCAAATGCAGAGGGGGGCGTGAGGGGGACTTGGAGAGAACACGCGGTGCAACAGTG
CAAACTAGGGGGGAGAGGTGCCCGGGAGGTGAGGTGAACGATTGCGTTTTGAGGCTTGAAACCGG
TGAAGTCGGCGCAGTGGTGCTGGTCACGTGGCACCTCCCGGGTTG
Found at i:114400 original size:8 final size:8
Alignment explanation
Indices: 114384--114419 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
114374 AAGTGGGATG
*
114384 GTGGGAGA
1 GTGGAAGA
*
114392 GTAGAAGA
1 GTGGAAGA
114400 GTGGAAGA
1 GTGGAAGA
114408 GTGGAAGA
1 GTGGAAGA
114416 GTGG
1 GTGG
114420 GGATTAGTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.33, C:0.00, G:0.53, T:0.14
Consensus pattern (8 bp):
GTGGAAGA
Left flanking sequence: Indices 113884 -- 114383
ACACCACGGCCGCGAGGCGGGTGCAGGCGCACGCGGGGGCTCTGTGGCAGCGGTGGTTTTGCGGC
TGGCGGGTGGGCCGGACCACCCAGCCCGCTATTTTTAGGGTCCTTTTGTGAGGCCCCGGTGTCCC
AATCGGGCAATTGGGCCACCGGCCAATAAGGTGGGTGCAAACGGGCCTAAAACGGTTGGGAAAAG
TCTGCATGGGTGGAGTGTCACGTTGCAGTGGGTGGGGTGCGCCAGGAGTGCTGGGGGGGTGTTTG
GGTGTTTTGGGATGGGTTTACGAGATGGTGGAGGAGAAGGTGGTGGGAGGGTGATGGGAGGGTCG
TGGGAGGTCGTGGAGGACTGGTGTAATTAGGACAAAGATGGGGTGGGTGGGACAATGGCGGGCGG
GGAACCGAGGGGTGGGTGGGCGTGGCTTAGGGGCGGAGTGGGATGACGTTTCTGCAGTGGGCGGA
GGGGGGAAGGGGAAGAAGGTGGGAAGGTGGGAGGAAAGTGGGATG
Right flanking sequence: Indices 114420 -- 114919
GGATTAGTAGGTTAGGTGAGTGGGTTAGGTGAGTTGGTTAGGTGAGTATGTGAGTAGGTTAGGTG
CGTAGGTGAGTGAGTTAGGTGCGTAGGTGGGTAGGTTAGGGTTGGCTACGGGACTAGAGAAAGTT
AAGGGCGTTGGGTGCGTAACGGGGGCACAGCGAGCATTGTTGGAGTAGGCTTTGAGTTGCAAATG
GTCGGATCGGGCTGAGAGTGAGTGCCTAAGCCACCAGGTTGGTTAGTTTGAGCCGGTACGAGGCT
ACTGTACGACGTACGAGGCTACCGTTTGAGGCTACCGTTCGGGCTGTCTTCGGTAGCGGTGCGAG
TTTTGTAGGGTTTGAGAAGTGGAGGTGGTCTCATTGGGCCAAATGCTGACATGTGTATTTGGAGT
TGAGTCGTTCAGATCCATTGAAACCGGAAAAGGCTTGTCAATATCATTCTGCGGCCGCCCATAAA
TGGTGGCTTGGCTGCAAATCTCCACCTAGGCGGTACTAAACGCAG
Found at i:114474 original size:21 final size:21
Alignment explanation
Indices: 114445--114524 Score: 108
Period size: 21 Copynumber: 3.8 Consensus size: 21
114435 GTGAGTGGGT
* *
114445 TAGGTGAGTTGGTTAGGTGAG
1 TAGGTGAGTAGGTTAGGTGCG
*
114466 TATGTGAGTAGGTTAGGTGCG
1 TAGGTGAGTAGGTTAGGTGCG
114487 TAGGTGAGT-GAGTTAGGTGCG
1 TAGGTGAGTAG-GTTAGGTGCG
*
114508 TAGGTGGGTAGGTTAGG
1 TAGGTGAGTAGGTTAGG
114525 GTTGGCTACG
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
20 1 0.02
21 50 0.96
22 1 0.02
ACGTcount: A:0.19, C:0.03, G:0.47, T:0.31
Consensus pattern (21 bp):
TAGGTGAGTAGGTTAGGTGCG
Left flanking sequence: Indices 113945 -- 114444
CGGCTGGCGGGTGGGCCGGACCACCCAGCCCGCTATTTTTAGGGTCCTTTTGTGAGGCCCCGGTG
TCCCAATCGGGCAATTGGGCCACCGGCCAATAAGGTGGGTGCAAACGGGCCTAAAACGGTTGGGA
AAAGTCTGCATGGGTGGAGTGTCACGTTGCAGTGGGTGGGGTGCGCCAGGAGTGCTGGGGGGGTG
TTTGGGTGTTTTGGGATGGGTTTACGAGATGGTGGAGGAGAAGGTGGTGGGAGGGTGATGGGAGG
GTCGTGGGAGGTCGTGGAGGACTGGTGTAATTAGGACAAAGATGGGGTGGGTGGGACAATGGCGG
GCGGGGAACCGAGGGGTGGGTGGGCGTGGCTTAGGGGCGGAGTGGGATGACGTTTCTGCAGTGGG
CGGAGGGGGGAAGGGGAAGAAGGTGGGAAGGTGGGAGGAAAGTGGGATGGTGGGAGAGTAGAAGA
GTGGAAGAGTGGAAGAGTGGGGATTAGTAGGTTAGGTGAGTGGGT
Right flanking sequence: Indices 114525 -- 115024
GTTGGCTACGGGACTAGAGAAAGTTAAGGGCGTTGGGTGCGTAACGGGGGCACAGCGAGCATTGT
TGGAGTAGGCTTTGAGTTGCAAATGGTCGGATCGGGCTGAGAGTGAGTGCCTAAGCCACCAGGTT
GGTTAGTTTGAGCCGGTACGAGGCTACTGTACGACGTACGAGGCTACCGTTTGAGGCTACCGTTC
GGGCTGTCTTCGGTAGCGGTGCGAGTTTTGTAGGGTTTGAGAAGTGGAGGTGGTCTCATTGGGCC
AAATGCTGACATGTGTATTTGGAGTTGAGTCGTTCAGATCCATTGAAACCGGAAAAGGCTTGTCA
ATATCATTCTGCGGCCGCCCATAAATGGTGGCTTGGCTGCAAATCTCCACCTAGGCGGTACTAAA
CGCAGATGGACCGGTTAAAAAGGCAGATCGTGGAAGCACGTCGTTTTGTGACCCTTTGTCTCTCG
ACCATTTGGGAATTACCTAGCTAAGACTAAATTGACATTTAAGTT
Found at i:114491 original size:13 final size:13
Alignment explanation
Indices: 114425--114524 Score: 77
Period size: 13 Copynumber: 7.8 Consensus size: 13
114415 AGTGGGGATT
114425 AGTAGGTTAGGTG
1 AGTAGGTTAGGTG
*
114438 AGTGGGTTAGGTG
1 AGTAGGTTAGGTG
*
114451 AGTTGGTTAGGTG
1 AGTAGGTTAGGTG
114464 AGTA---T--GTG
1 AGTAGGTTAGGTG
114472 AGTAGGTTAGGTG
1 AGTAGGTTAGGTG
* *
114485 CGTAGGTGA-GTG
1 AGTAGGTTAGGTG
114497 AGTTAGGTGCGTAGGTG
1 AG-TAGGT---TAGGTG
*
114514 GGTAGGTTAGG
1 AGTAGGTTAGG
114525 GTTGGCTACG
Statistics
Matches: 69, Mismatches: 8, Indels: 20
0.71 0.08 0.21
Matches are distributed among these distances:
8 7 0.10
10 1 0.01
11 1 0.01
12 4 0.06
13 46 0.67
16 6 0.09
17 4 0.06
ACGTcount: A:0.19, C:0.02, G:0.48, T:0.31
Consensus pattern (13 bp):
AGTAGGTTAGGTG
Left flanking sequence: Indices 113925 -- 114424
CTGTGGCAGCGGTGGTTTTGCGGCTGGCGGGTGGGCCGGACCACCCAGCCCGCTATTTTTAGGGT
CCTTTTGTGAGGCCCCGGTGTCCCAATCGGGCAATTGGGCCACCGGCCAATAAGGTGGGTGCAAA
CGGGCCTAAAACGGTTGGGAAAAGTCTGCATGGGTGGAGTGTCACGTTGCAGTGGGTGGGGTGCG
CCAGGAGTGCTGGGGGGGTGTTTGGGTGTTTTGGGATGGGTTTACGAGATGGTGGAGGAGAAGGT
GGTGGGAGGGTGATGGGAGGGTCGTGGGAGGTCGTGGAGGACTGGTGTAATTAGGACAAAGATGG
GGTGGGTGGGACAATGGCGGGCGGGGAACCGAGGGGTGGGTGGGCGTGGCTTAGGGGCGGAGTGG
GATGACGTTTCTGCAGTGGGCGGAGGGGGGAAGGGGAAGAAGGTGGGAAGGTGGGAGGAAAGTGG
GATGGTGGGAGAGTAGAAGAGTGGAAGAGTGGAAGAGTGGGGATT
Right flanking sequence: Indices 114525 -- 115024
GTTGGCTACGGGACTAGAGAAAGTTAAGGGCGTTGGGTGCGTAACGGGGGCACAGCGAGCATTGT
TGGAGTAGGCTTTGAGTTGCAAATGGTCGGATCGGGCTGAGAGTGAGTGCCTAAGCCACCAGGTT
GGTTAGTTTGAGCCGGTACGAGGCTACTGTACGACGTACGAGGCTACCGTTTGAGGCTACCGTTC
GGGCTGTCTTCGGTAGCGGTGCGAGTTTTGTAGGGTTTGAGAAGTGGAGGTGGTCTCATTGGGCC
AAATGCTGACATGTGTATTTGGAGTTGAGTCGTTCAGATCCATTGAAACCGGAAAAGGCTTGTCA
ATATCATTCTGCGGCCGCCCATAAATGGTGGCTTGGCTGCAAATCTCCACCTAGGCGGTACTAAA
CGCAGATGGACCGGTTAAAAAGGCAGATCGTGGAAGCACGTCGTTTTGTGACCCTTTGTCTCTCG
ACCATTTGGGAATTACCTAGCTAAGACTAAATTGACATTTAAGTT
Found at i:114511 original size:34 final size:35
Alignment explanation
Indices: 114430--114512 Score: 98
Period size: 34 Copynumber: 2.4 Consensus size: 35
114420 GGATTAGTAG
* * *
114430 GTTAGGTGAGTGGGTTAGGTGAGTTGGTTAGGTGA
1 GTTAGGTGAGTAGGTTAGGTGAGTAGGTGAGGTGA
* *
114465 G-TATGTGAGTAGGTTAGGTGCGTAGGTGA-GTGA
1 GTTAGGTGAGTAGGTTAGGTGAGTAGGTGAGGTGA
*
114498 GTTAGGTGCGTAGGT
1 GTTAGGTGAGTAGGT
114513 GGGTAGGTTA
Statistics
Matches: 40, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
33 5 0.12
34 34 0.85
35 1 0.03
ACGTcount: A:0.18, C:0.02, G:0.47, T:0.33
Consensus pattern (35 bp):
GTTAGGTGAGTAGGTTAGGTGAGTAGGTGAGGTGA
Left flanking sequence: Indices 113930 -- 114429
GCAGCGGTGGTTTTGCGGCTGGCGGGTGGGCCGGACCACCCAGCCCGCTATTTTTAGGGTCCTTT
TGTGAGGCCCCGGTGTCCCAATCGGGCAATTGGGCCACCGGCCAATAAGGTGGGTGCAAACGGGC
CTAAAACGGTTGGGAAAAGTCTGCATGGGTGGAGTGTCACGTTGCAGTGGGTGGGGTGCGCCAGG
AGTGCTGGGGGGGTGTTTGGGTGTTTTGGGATGGGTTTACGAGATGGTGGAGGAGAAGGTGGTGG
GAGGGTGATGGGAGGGTCGTGGGAGGTCGTGGAGGACTGGTGTAATTAGGACAAAGATGGGGTGG
GTGGGACAATGGCGGGCGGGGAACCGAGGGGTGGGTGGGCGTGGCTTAGGGGCGGAGTGGGATGA
CGTTTCTGCAGTGGGCGGAGGGGGGAAGGGGAAGAAGGTGGGAAGGTGGGAGGAAAGTGGGATGG
TGGGAGAGTAGAAGAGTGGAAGAGTGGAAGAGTGGGGATTAGTAG
Right flanking sequence: Indices 114513 -- 115012
GGGTAGGTTAGGGTTGGCTACGGGACTAGAGAAAGTTAAGGGCGTTGGGTGCGTAACGGGGGCAC
AGCGAGCATTGTTGGAGTAGGCTTTGAGTTGCAAATGGTCGGATCGGGCTGAGAGTGAGTGCCTA
AGCCACCAGGTTGGTTAGTTTGAGCCGGTACGAGGCTACTGTACGACGTACGAGGCTACCGTTTG
AGGCTACCGTTCGGGCTGTCTTCGGTAGCGGTGCGAGTTTTGTAGGGTTTGAGAAGTGGAGGTGG
TCTCATTGGGCCAAATGCTGACATGTGTATTTGGAGTTGAGTCGTTCAGATCCATTGAAACCGGA
AAAGGCTTGTCAATATCATTCTGCGGCCGCCCATAAATGGTGGCTTGGCTGCAAATCTCCACCTA
GGCGGTACTAAACGCAGATGGACCGGTTAAAAAGGCAGATCGTGGAAGCACGTCGTTTTGTGACC
CTTTGTCTCTCGACCATTTGGGAATTACCTAGCTAAGACTAAATT
Found at i:114712 original size:13 final size:13
Alignment explanation
Indices: 114694--114718 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
114684 TACGACGTAC
114694 GAGGCTACCGTTT
1 GAGGCTACCGTTT
114707 GAGGCTACCGTT
1 GAGGCTACCGTT
114719 CGGGCTGTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.24, G:0.32, T:0.28
Consensus pattern (13 bp):
GAGGCTACCGTTT
Left flanking sequence: Indices 114194 -- 114693
GTGATGGGAGGGTCGTGGGAGGTCGTGGAGGACTGGTGTAATTAGGACAAAGATGGGGTGGGTGG
GACAATGGCGGGCGGGGAACCGAGGGGTGGGTGGGCGTGGCTTAGGGGCGGAGTGGGATGACGTT
TCTGCAGTGGGCGGAGGGGGGAAGGGGAAGAAGGTGGGAAGGTGGGAGGAAAGTGGGATGGTGGG
AGAGTAGAAGAGTGGAAGAGTGGAAGAGTGGGGATTAGTAGGTTAGGTGAGTGGGTTAGGTGAGT
TGGTTAGGTGAGTATGTGAGTAGGTTAGGTGCGTAGGTGAGTGAGTTAGGTGCGTAGGTGGGTAG
GTTAGGGTTGGCTACGGGACTAGAGAAAGTTAAGGGCGTTGGGTGCGTAACGGGGGCACAGCGAG
CATTGTTGGAGTAGGCTTTGAGTTGCAAATGGTCGGATCGGGCTGAGAGTGAGTGCCTAAGCCAC
CAGGTTGGTTAGTTTGAGCCGGTACGAGGCTACTGTACGACGTAC
Right flanking sequence: Indices 114719 -- 115218
CGGGCTGTCTTCGGTAGCGGTGCGAGTTTTGTAGGGTTTGAGAAGTGGAGGTGGTCTCATTGGGC
CAAATGCTGACATGTGTATTTGGAGTTGAGTCGTTCAGATCCATTGAAACCGGAAAAGGCTTGTC
AATATCATTCTGCGGCCGCCCATAAATGGTGGCTTGGCTGCAAATCTCCACCTAGGCGGTACTAA
ACGCAGATGGACCGGTTAAAAAGGCAGATCGTGGAAGCACGTCGTTTTGTGACCCTTTGTCTCTC
GACCATTTGGGAATTACCTAGCTAAGACTAAATTGACATTTAAGTTTAAGTTTTACAAAAGCTAG
CAGATCGGAAAAACAACTGAATGCTCAAATCCACTGAATGGCCCATATTAATACGTCGGTGATTC
CCACAGTGACAATCAAGGTGTCATCTGGTTGTTCCAGAGCCAGTCACCGTCACCAGTCGCCTACA
TACCCTAAAGCTACCTCAAGCACTAACCTACCAGCTCATCGTACC
Found at i:116464 original size:15 final size:15
Alignment explanation
Indices: 116444--116479 Score: 63
Period size: 15 Copynumber: 2.4 Consensus size: 15
116434 GCACCAGCAT
116444 CAGCACCCGCACCTC
1 CAGCACCCGCACCTC
116459 CAGCACCCGCACCTC
1 CAGCACCCGCACCTC
*
116474 CCGCAC
1 CAGCAC
116480 AACAAACGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.19, C:0.61, G:0.14, T:0.06
Consensus pattern (15 bp):
CAGCACCCGCACCTC
Left flanking sequence: Indices 115944 -- 116443
CCTACGCTCCCTCCTCCCTCCTCCCGCCCGCGCTCCGCTTTGTGCCACCCGCACACACGCGCACC
CGATCTGAAAAATGACGTGTTTATTTTCGCCAACCCACCGGCAATTTTCAGGCCTCCACCACCAC
CGCGCTCTCCGCCACCTACCGGGTACACCTATAGAGAACGCGCCAATGGTGAGAAAGAAAGCAGC
CCAGCGGTACGCGGTGCCGCCGTTGGCCACCCTGGACCAGCCGCAGGCACTGGCGCCGCCCACGC
CCCAGATGGGGGTGATGGCGCCGCCCCCGCCCCTGGTGCCCGCCGCCATGGCGCCGCCCCCGCCC
GCTGCCGACGACGACGGCGACGACGCGTGGGGGTTGGACGACGAGTTGGACGAATTGGACGGGTT
TGGCCACGAAGTGAACCAAGCGCAACCCCAGAGTGCACCCGCACCGAGCGCGCCCGCACCCGCAC
AGAAGCCACCGGCACCGGCCGCACCCGAGCCGGCGGCACCAGCAT
Right flanking sequence: Indices 116480 -- 116979
AACAAACGGAGGCAGCACCTCCGGTGCTGCTGTGGGAGGACGAGACGGGGCTCGACGACATGCCG
TGGGACCTGGAGCCGGCGCCGCCCGCGAATGCCCTGCTGGCGGAGCCTGCCCAGGAGCAGATGCC
CTGGGACCAGGGCGAGTCTGAGCAGATGCCGTGGGAGCAAGAGAGCCAGAGCCAGCCCTGGCAGA
CGGAGGCTGAGCCTCAGGCGGAGGAGGAGCACCACGAAGCACCTCCCCACCAGGAGGCACCTCAG
GCGGAGGCACAGTCCGAGCACCACGAGGAGCACGCGGAGGCACCCCAGGACGACCAGTGGCAGCA
GTGGCAGCAGCAGCAGGCGTGGAACCAGGAGACTCAGCCGTGGCAGCAGTGGCAGCCCGAGGGCC
ACGAGCACGACCAGAGCCACCAGAGTCACGAGCACACTCATGAGCACACTCACGAGCAGCACCAG
GGACACCAGGAGGAGGCTCAAGAGGAGGCTCAAGAGGAGGCACTG
Found at i:116916 original size:12 final size:12
Alignment explanation
Indices: 116895--116927 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
116885 GCCACCAGAG
116895 TCACGAGCACAC
1 TCACGAGCACAC
*
116907 TCATGAGCACAC
1 TCACGAGCACAC
116919 TCACGAGCA
1 TCACGAGCA
116928 GCACCAGGGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.33, C:0.36, G:0.18, T:0.12
Consensus pattern (12 bp):
TCACGAGCACAC
Left flanking sequence: Indices 116395 -- 116894
GCACAGAAGCCACCGGCACCGGCCGCACCCGAGCCGGCGGCACCAGCATCAGCACCCGCACCTCC
AGCACCCGCACCTCCCGCACAACAAACGGAGGCAGCACCTCCGGTGCTGCTGTGGGAGGACGAGA
CGGGGCTCGACGACATGCCGTGGGACCTGGAGCCGGCGCCGCCCGCGAATGCCCTGCTGGCGGAG
CCTGCCCAGGAGCAGATGCCCTGGGACCAGGGCGAGTCTGAGCAGATGCCGTGGGAGCAAGAGAG
CCAGAGCCAGCCCTGGCAGACGGAGGCTGAGCCTCAGGCGGAGGAGGAGCACCACGAAGCACCTC
CCCACCAGGAGGCACCTCAGGCGGAGGCACAGTCCGAGCACCACGAGGAGCACGCGGAGGCACCC
CAGGACGACCAGTGGCAGCAGTGGCAGCAGCAGCAGGCGTGGAACCAGGAGACTCAGCCGTGGCA
GCAGTGGCAGCCCGAGGGCCACGAGCACGACCAGAGCCACCAGAG
Right flanking sequence: Indices 116928 -- 117427
GCACCAGGGACACCAGGAGGAGGCTCAAGAGGAGGCTCAAGAGGAGGCACTGCACCAGGAACTGC
ACCAGGCGCACACCGAAGCACCGGAACAACCCCACGCGTCCAACGACCAGTCTCACCCCGAGGCT
CCGTCCGAGGCCCCCAGCCAGACCCAGTCGCAGGCGCACGACCAGAGCCAGGCCCAGTCGCAGGC
TCCCTGGGAGTCCCACGCCGCGGCCCTGGACACCCTGGCGAAGCCGTGGGAGACCGCGGAGAAAA
TGCCGTGGGACACTTCCTCCGGTGCTACTTCCGGTGCTGCTTCCGGTGCTGCACACACCTCCGGT
GCAACGCTCGAAAAGATGCCGTGGGAACAGGACCACCACGGCGGCCACGACAGCCACCAGCCGGC
CCACGACAGCCACCAACCGGCCCACGACACGGCCCACCAACCCCAGCAGCCCGCCCAGCTGCTGG
CTGCGCAGCCCGAGCCCGAGAAAATGCCGTGGGAGCAAGACCAGC
Found at i:116961 original size:12 final size:12
Alignment explanation
Indices: 116944--116975 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
116934 GGGACACCAG
116944 GAGGAGGCTCAA
1 GAGGAGGCTCAA
116956 GAGGAGGCTCAA
1 GAGGAGGCTCAA
116968 GAGGAGGC
1 GAGGAGGC
116976 ACTGCACCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.31, C:0.16, G:0.47, T:0.06
Consensus pattern (12 bp):
GAGGAGGCTCAA
Left flanking sequence: Indices 116444 -- 116943
CAGCACCCGCACCTCCAGCACCCGCACCTCCCGCACAACAAACGGAGGCAGCACCTCCGGTGCTG
CTGTGGGAGGACGAGACGGGGCTCGACGACATGCCGTGGGACCTGGAGCCGGCGCCGCCCGCGAA
TGCCCTGCTGGCGGAGCCTGCCCAGGAGCAGATGCCCTGGGACCAGGGCGAGTCTGAGCAGATGC
CGTGGGAGCAAGAGAGCCAGAGCCAGCCCTGGCAGACGGAGGCTGAGCCTCAGGCGGAGGAGGAG
CACCACGAAGCACCTCCCCACCAGGAGGCACCTCAGGCGGAGGCACAGTCCGAGCACCACGAGGA
GCACGCGGAGGCACCCCAGGACGACCAGTGGCAGCAGTGGCAGCAGCAGCAGGCGTGGAACCAGG
AGACTCAGCCGTGGCAGCAGTGGCAGCCCGAGGGCCACGAGCACGACCAGAGCCACCAGAGTCAC
GAGCACACTCATGAGCACACTCACGAGCAGCACCAGGGACACCAG
Right flanking sequence: Indices 116976 -- 117475
ACTGCACCAGGAACTGCACCAGGCGCACACCGAAGCACCGGAACAACCCCACGCGTCCAACGACC
AGTCTCACCCCGAGGCTCCGTCCGAGGCCCCCAGCCAGACCCAGTCGCAGGCGCACGACCAGAGC
CAGGCCCAGTCGCAGGCTCCCTGGGAGTCCCACGCCGCGGCCCTGGACACCCTGGCGAAGCCGTG
GGAGACCGCGGAGAAAATGCCGTGGGACACTTCCTCCGGTGCTACTTCCGGTGCTGCTTCCGGTG
CTGCACACACCTCCGGTGCAACGCTCGAAAAGATGCCGTGGGAACAGGACCACCACGGCGGCCAC
GACAGCCACCAGCCGGCCCACGACAGCCACCAACCGGCCCACGACACGGCCCACCAACCCCAGCA
GCCCGCCCAGCTGCTGGCTGCGCAGCCCGAGCCCGAGAAAATGCCGTGGGAGCAAGACCAGCCCG
CCCAGGCCCCCCAGAGCCACCCGAGCCACCCGAGCCTCCACAGCC
Found at i:117238 original size:12 final size:12
Alignment explanation
Indices: 117205--117239 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
117195 GGACACTTCC
*
117205 TCCGGTGCTACT
1 TCCGGTGCTGCT
117217 TCCGGTGCTGCT
1 TCCGGTGCTGCT
117229 TCCGGTGCTGC
1 TCCGGTGCTGC
117240 ACACACCTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.03, C:0.34, G:0.31, T:0.31
Consensus pattern (12 bp):
TCCGGTGCTGCT
Left flanking sequence: Indices 116705 -- 117204
ACCACGAAGCACCTCCCCACCAGGAGGCACCTCAGGCGGAGGCACAGTCCGAGCACCACGAGGAG
CACGCGGAGGCACCCCAGGACGACCAGTGGCAGCAGTGGCAGCAGCAGCAGGCGTGGAACCAGGA
GACTCAGCCGTGGCAGCAGTGGCAGCCCGAGGGCCACGAGCACGACCAGAGCCACCAGAGTCACG
AGCACACTCATGAGCACACTCACGAGCAGCACCAGGGACACCAGGAGGAGGCTCAAGAGGAGGCT
CAAGAGGAGGCACTGCACCAGGAACTGCACCAGGCGCACACCGAAGCACCGGAACAACCCCACGC
GTCCAACGACCAGTCTCACCCCGAGGCTCCGTCCGAGGCCCCCAGCCAGACCCAGTCGCAGGCGC
ACGACCAGAGCCAGGCCCAGTCGCAGGCTCCCTGGGAGTCCCACGCCGCGGCCCTGGACACCCTG
GCGAAGCCGTGGGAGACCGCGGAGAAAATGCCGTGGGACACTTCC
Right flanking sequence: Indices 117240 -- 117739
ACACACCTCCGGTGCAACGCTCGAAAAGATGCCGTGGGAACAGGACCACCACGGCGGCCACGACA
GCCACCAGCCGGCCCACGACAGCCACCAACCGGCCCACGACACGGCCCACCAACCCCAGCAGCCC
GCCCAGCTGCTGGCTGCGCAGCCCGAGCCCGAGAAAATGCCGTGGGAGCAAGACCAGCCCGCCCA
GGCCCCCCAGAGCCACCCGAGCCACCCGAGCCTCCACAGCCTCCACCAGGCGGTGGCCACGCTGC
CGGTGGTCTCCCAGGTGTCCCAGCTGGCCCACATCACCGCCAACGTCCTGGTGGTGCTGGAAACG
CCGCTGCGGATCAAAAAGCTGCTTGACGAGTTGTTCATGGACGACGACGACTTGTTGCTCGACGA
CGACTTGCTTGACGACGACTTGCTCGACGACGAGCCTGTCGAGGCTGCCGCCCACCAGCCCGCTG
CCCAGCCGGCCCAGACCTTGGCCCAGCCCAAGACGTCGAAGTACG
Found at i:117309 original size:21 final size:21
Alignment explanation
Indices: 117297--117346 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
117287 ACCACGGCGG
117297 CCACGACAGCCACCAGCCGGC
1 CCACGACAGCCACCAGCCGGC
*
117318 CCACGACAGCCACCAACCGGC
1 CCACGACAGCCACCAGCCGGC
117339 CCACGACA
1 CCACGACA
117347 CGGCCCACCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.28, C:0.52, G:0.20, T:0.00
Consensus pattern (21 bp):
CCACGACAGCCACCAGCCGGC
Left flanking sequence: Indices 116797 -- 117296
TGGCAGCAGTGGCAGCAGCAGCAGGCGTGGAACCAGGAGACTCAGCCGTGGCAGCAGTGGCAGCC
CGAGGGCCACGAGCACGACCAGAGCCACCAGAGTCACGAGCACACTCATGAGCACACTCACGAGC
AGCACCAGGGACACCAGGAGGAGGCTCAAGAGGAGGCTCAAGAGGAGGCACTGCACCAGGAACTG
CACCAGGCGCACACCGAAGCACCGGAACAACCCCACGCGTCCAACGACCAGTCTCACCCCGAGGC
TCCGTCCGAGGCCCCCAGCCAGACCCAGTCGCAGGCGCACGACCAGAGCCAGGCCCAGTCGCAGG
CTCCCTGGGAGTCCCACGCCGCGGCCCTGGACACCCTGGCGAAGCCGTGGGAGACCGCGGAGAAA
ATGCCGTGGGACACTTCCTCCGGTGCTACTTCCGGTGCTGCTTCCGGTGCTGCACACACCTCCGG
TGCAACGCTCGAAAAGATGCCGTGGGAACAGGACCACCACGGCGG
Right flanking sequence: Indices 117347 -- 117846
CGGCCCACCAACCCCAGCAGCCCGCCCAGCTGCTGGCTGCGCAGCCCGAGCCCGAGAAAATGCCG
TGGGAGCAAGACCAGCCCGCCCAGGCCCCCCAGAGCCACCCGAGCCACCCGAGCCTCCACAGCCT
CCACCAGGCGGTGGCCACGCTGCCGGTGGTCTCCCAGGTGTCCCAGCTGGCCCACATCACCGCCA
ACGTCCTGGTGGTGCTGGAAACGCCGCTGCGGATCAAAAAGCTGCTTGACGAGTTGTTCATGGAC
GACGACGACTTGTTGCTCGACGACGACTTGCTTGACGACGACTTGCTCGACGACGAGCCTGTCGA
GGCTGCCGCCCACCAGCCCGCTGCCCAGCCGGCCCAGACCTTGGCCCAGCCCAAGACGTCGAAGT
ACGGTGCCAACAAATACGCCGCACCGGCACCGGGTGCAGCACCGGCACAAGCACCGGGTCAGCCA
GGCTACGGCCAGGGCACCCAACAGTACAACCAGTACGCCCAGGGT
Found at i:117637 original size:15 final size:15
Alignment explanation
Indices: 117619--117662 Score: 79
Period size: 15 Copynumber: 2.9 Consensus size: 15
117609 CGACGACTTG
117619 TTGCTCGACGACGAC
1 TTGCTCGACGACGAC
*
117634 TTGCTTGACGACGAC
1 TTGCTCGACGACGAC
117649 TTGCTCGACGACGA
1 TTGCTCGACGACGA
117663 GCCTGTCGAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 27 1.00
ACGTcount: A:0.20, C:0.30, G:0.27, T:0.23
Consensus pattern (15 bp):
TTGCTCGACGACGAC
Left flanking sequence: Indices 117119 -- 117618
AGGCTCCCTGGGAGTCCCACGCCGCGGCCCTGGACACCCTGGCGAAGCCGTGGGAGACCGCGGAG
AAAATGCCGTGGGACACTTCCTCCGGTGCTACTTCCGGTGCTGCTTCCGGTGCTGCACACACCTC
CGGTGCAACGCTCGAAAAGATGCCGTGGGAACAGGACCACCACGGCGGCCACGACAGCCACCAGC
CGGCCCACGACAGCCACCAACCGGCCCACGACACGGCCCACCAACCCCAGCAGCCCGCCCAGCTG
CTGGCTGCGCAGCCCGAGCCCGAGAAAATGCCGTGGGAGCAAGACCAGCCCGCCCAGGCCCCCCA
GAGCCACCCGAGCCACCCGAGCCTCCACAGCCTCCACCAGGCGGTGGCCACGCTGCCGGTGGTCT
CCCAGGTGTCCCAGCTGGCCCACATCACCGCCAACGTCCTGGTGGTGCTGGAAACGCCGCTGCGG
ATCAAAAAGCTGCTTGACGAGTTGTTCATGGACGACGACGACTTG
Right flanking sequence: Indices 117663 -- 118162
GCCTGTCGAGGCTGCCGCCCACCAGCCCGCTGCCCAGCCGGCCCAGACCTTGGCCCAGCCCAAGA
CGTCGAAGTACGGTGCCAACAAATACGCCGCACCGGCACCGGGTGCAGCACCGGCACAAGCACCG
GGTCAGCCAGGCTACGGCCAGGGCACCCAACAGTACAACCAGTACGCCCAGGGTGCCCAGGGCTA
CGGCAGCCAGGGGTACGCCCAGCCCCAGGCGTGGCAGCAACCAGGGGTGCCCGTGCCCCAAGTGC
CCCTGGTGCCGGTGCCCCAGGTGCCCCAGGTCCCCGCGGTCGCCCCGGCCCAGACGAGCCACGCG
CCCAAGAAGAAGGGCTACGACTCGTCCAAGGGCTACGACTTCCCCGACGACGTGCTCACGGTGAA
GCCCGCGCCCCGCAAGCCGCTGGCGGCCAACAAGTACGCCGCCCACGCGCCGCTGACGGGCCCCA
CGCTGGCGCACTCGCACCTGGGGGCGGGGTCGGTGGGCGCGAGCC
Found at i:117671 original size:15 final size:15
Alignment explanation
Indices: 117620--117671 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
117610 GACGACTTGT
*
117620 TGCTCGACGACGACT
1 TGCTCGACGACGACC
* *
117635 TGCTTGACGACGACT
1 TGCTCGACGACGACC
117650 TGCTCGACGACGAGCC
1 TGCTCGACGACGA-CC
117666 TG-TCGA
1 TGCTCGA
117672 GGCTGCCGCC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
15 30 0.91
16 3 0.09
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.21
Consensus pattern (15 bp):
TGCTCGACGACGACC
Left flanking sequence: Indices 117120 -- 117619
GGCTCCCTGGGAGTCCCACGCCGCGGCCCTGGACACCCTGGCGAAGCCGTGGGAGACCGCGGAGA
AAATGCCGTGGGACACTTCCTCCGGTGCTACTTCCGGTGCTGCTTCCGGTGCTGCACACACCTCC
GGTGCAACGCTCGAAAAGATGCCGTGGGAACAGGACCACCACGGCGGCCACGACAGCCACCAGCC
GGCCCACGACAGCCACCAACCGGCCCACGACACGGCCCACCAACCCCAGCAGCCCGCCCAGCTGC
TGGCTGCGCAGCCCGAGCCCGAGAAAATGCCGTGGGAGCAAGACCAGCCCGCCCAGGCCCCCCAG
AGCCACCCGAGCCACCCGAGCCTCCACAGCCTCCACCAGGCGGTGGCCACGCTGCCGGTGGTCTC
CCAGGTGTCCCAGCTGGCCCACATCACCGCCAACGTCCTGGTGGTGCTGGAAACGCCGCTGCGGA
TCAAAAAGCTGCTTGACGAGTTGTTCATGGACGACGACGACTTGT
Right flanking sequence: Indices 117672 -- 118171
GGCTGCCGCCCACCAGCCCGCTGCCCAGCCGGCCCAGACCTTGGCCCAGCCCAAGACGTCGAAGT
ACGGTGCCAACAAATACGCCGCACCGGCACCGGGTGCAGCACCGGCACAAGCACCGGGTCAGCCA
GGCTACGGCCAGGGCACCCAACAGTACAACCAGTACGCCCAGGGTGCCCAGGGCTACGGCAGCCA
GGGGTACGCCCAGCCCCAGGCGTGGCAGCAACCAGGGGTGCCCGTGCCCCAAGTGCCCCTGGTGC
CGGTGCCCCAGGTGCCCCAGGTCCCCGCGGTCGCCCCGGCCCAGACGAGCCACGCGCCCAAGAAG
AAGGGCTACGACTCGTCCAAGGGCTACGACTTCCCCGACGACGTGCTCACGGTGAAGCCCGCGCC
CCGCAAGCCGCTGGCGGCCAACAAGTACGCCGCCCACGCGCCGCTGACGGGCCCCACGCTGGCGC
ACTCGCACCTGGGGGCGGGGTCGGTGGGCGCGAGCCCGGCAATGG
Found at i:117930 original size:24 final size:24
Alignment explanation
Indices: 117903--117958 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
117893 AGCAACCAGG
*
117903 GGTGCCCGTGCCCCAAGTGCCCCT
1 GGTGCCCGTGCCCCAAGTGCCCCA
* *
117927 GGTGCCGGTGCCCCAGGTGCCCCA
1 GGTGCCCGTGCCCCAAGTGCCCCA
*
117951 GGTCCCCG
1 GGTGCCCG
117959 CGGTCGCCCC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.07, C:0.45, G:0.34, T:0.14
Consensus pattern (24 bp):
GGTGCCCGTGCCCCAAGTGCCCCA
Left flanking sequence: Indices 117403 -- 117902
AAAATGCCGTGGGAGCAAGACCAGCCCGCCCAGGCCCCCCAGAGCCACCCGAGCCACCCGAGCCT
CCACAGCCTCCACCAGGCGGTGGCCACGCTGCCGGTGGTCTCCCAGGTGTCCCAGCTGGCCCACA
TCACCGCCAACGTCCTGGTGGTGCTGGAAACGCCGCTGCGGATCAAAAAGCTGCTTGACGAGTTG
TTCATGGACGACGACGACTTGTTGCTCGACGACGACTTGCTTGACGACGACTTGCTCGACGACGA
GCCTGTCGAGGCTGCCGCCCACCAGCCCGCTGCCCAGCCGGCCCAGACCTTGGCCCAGCCCAAGA
CGTCGAAGTACGGTGCCAACAAATACGCCGCACCGGCACCGGGTGCAGCACCGGCACAAGCACCG
GGTCAGCCAGGCTACGGCCAGGGCACCCAACAGTACAACCAGTACGCCCAGGGTGCCCAGGGCTA
CGGCAGCCAGGGGTACGCCCAGCCCCAGGCGTGGCAGCAACCAGG
Right flanking sequence: Indices 117959 -- 118458
CGGTCGCCCCGGCCCAGACGAGCCACGCGCCCAAGAAGAAGGGCTACGACTCGTCCAAGGGCTAC
GACTTCCCCGACGACGTGCTCACGGTGAAGCCCGCGCCCCGCAAGCCGCTGGCGGCCAACAAGTA
CGCCGCCCACGCGCCGCTGACGGGCCCCACGCTGGCGCACTCGCACCTGGGGGCGGGGTCGGTGG
GCGCGAGCCCGGCAATGGCCCAGCGCACCCTCAGCCACGCACTGAGCCAGTTCTTCGAGGACTTG
CCCATCGAGATGCCCAAGACCAAGGCCCGGGGCGCCAAGCGCGCCGCCACCCAGGCCCCGTCCCA
GCCGGTGGGCGGCCCCGCGCCCATGGGCGGAGCCCCCGGGGCCGGTGCCCCGCCGCCGCCCCCGG
CCAAGGCGCCCCCGCCCAACCCATACGCGCCGAAGGCCAACCAGGCGCCGCCCCCGCAGGCCCAG
GCGCCGATCCCCGCGATTGCCCCGCCGCTGGGGGTGTTTGCCGGC
Found at i:118719 original size:18 final size:18
Alignment explanation
Indices: 118696--118774 Score: 70
Period size: 18 Copynumber: 4.4 Consensus size: 18
118686 TCAGACTCCT
118696 GGTCAGACTCCGCCTATG
1 GGTCAGACTCCGCCTATG
* *
118714 GGTCAG-GTCCCTCCTATG
1 GGTCAGACT-CCGCCTATG
** *
118732 GGTCAGGTTCCTCCTATG
1 GGTCAGACTCCGCCTATG
* *
118750 GGTCAGGCCCCGCCTATG
1 GGTCAGACTCCGCCTATG
*
118768 GGCCAGA
1 GGTCAGA
118775 TGGGGATGGT
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
17 1 0.02
18 49 0.96
19 1 0.02
ACGTcount: A:0.14, C:0.33, G:0.30, T:0.23
Consensus pattern (18 bp):
GGTCAGACTCCGCCTATG
Left flanking sequence: Indices 118196 -- 118695
TGAGCCAGTTCTTCGAGGACTTGCCCATCGAGATGCCCAAGACCAAGGCCCGGGGCGCCAAGCGC
GCCGCCACCCAGGCCCCGTCCCAGCCGGTGGGCGGCCCCGCGCCCATGGGCGGAGCCCCCGGGGC
CGGTGCCCCGCCGCCGCCCCCGGCCAAGGCGCCCCCGCCCAACCCATACGCGCCGAAGGCCAACC
AGGCGCCGCCCCCGCAGGCCCAGGCGCCGATCCCCGCGATTGCCCCGCCGCTGGGGGTGTTTGCC
GGCCCCGGCCCCGCCCAGAGCCCGCGCCCCGGGCACCAGGCGCCCGCGGCGACGGCGCCCAACCC
GTACGCGCCCCAGGGTCCCCCCCAGGGGGCGGGTCCTGCCCCGGGCAAGAACCCGTACGCGCCCA
CGGGGCCGGCGATGGCGGCGCCCCCGATGGGAGGCCAGGCCATGGGCCAGTTCAGCTCGCCCCAG
ATGGGCCAGATTCCCCCGATGGGCCAGCCTATGGGTCAGACTCCT
Right flanking sequence: Indices 118775 -- 119274
TGGGGATGGTTCCCCCGCCTGGTCAGGTCGGGCAGGTGCCTCCCATGGGCCAGATGCCCGGCCAG
GCACCTCCCCACGGTGCGTACGCACCCCAGGGCCCTCCCCAGGCACAGGCACAGGCACAGGCACC
TCTGGCGTACACCCCTCCCCAGGGTCCTCCCCAGGGTCCTCCTCAGGGTCCTCCTCAGATGCCTC
CCCAGGGCTACCAACCCCAGGGTCTCCAGCCTCCTCAGGGTCCTCATGGTCCTCAGGGTCACCCC
CAAGGTCCTCCTCAGGGTCCTCCCCAAGGTGCCCAGGGCCACCCGCCCAAGCCGCACACCCCCAT
GGGCCTCTCGACGCTGCACCCGCAACAGAAGCCCGGGTTCGCCGCAGCGCTGCCCATGGGCAACA
CCCTGCTGGCGCCCGCAGCGCTGCCCAAGATCAACACCAACCTCCCCCGCGCCCCGGGGCAGGGG
TCGGCCACGGCGCAGTACAACCCCCGCGCGGGGCCCTACGCCCCC
Found at i:118736 original size:36 final size:36
Alignment explanation
Indices: 118696--118774 Score: 104
Period size: 36 Copynumber: 2.2 Consensus size: 36
118686 TCAGACTCCT
* *
118696 GGTCAGACTCCGCCTATGGGTCAGGTCCCTCCTATG
1 GGTCAGACTCCGCCTATGGGTCAGGCCCCGCCTATG
** *
118732 GGTCAGGTTCCTCCTATGGGTCAGGCCCCGCCTATG
1 GGTCAGACTCCGCCTATGGGTCAGGCCCCGCCTATG
*
118768 GGCCAGA
1 GGTCAGA
118775 TGGGGATGGT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.14, C:0.33, G:0.30, T:0.23
Consensus pattern (36 bp):
GGTCAGACTCCGCCTATGGGTCAGGCCCCGCCTATG
Left flanking sequence: Indices 118196 -- 118695
TGAGCCAGTTCTTCGAGGACTTGCCCATCGAGATGCCCAAGACCAAGGCCCGGGGCGCCAAGCGC
GCCGCCACCCAGGCCCCGTCCCAGCCGGTGGGCGGCCCCGCGCCCATGGGCGGAGCCCCCGGGGC
CGGTGCCCCGCCGCCGCCCCCGGCCAAGGCGCCCCCGCCCAACCCATACGCGCCGAAGGCCAACC
AGGCGCCGCCCCCGCAGGCCCAGGCGCCGATCCCCGCGATTGCCCCGCCGCTGGGGGTGTTTGCC
GGCCCCGGCCCCGCCCAGAGCCCGCGCCCCGGGCACCAGGCGCCCGCGGCGACGGCGCCCAACCC
GTACGCGCCCCAGGGTCCCCCCCAGGGGGCGGGTCCTGCCCCGGGCAAGAACCCGTACGCGCCCA
CGGGGCCGGCGATGGCGGCGCCCCCGATGGGAGGCCAGGCCATGGGCCAGTTCAGCTCGCCCCAG
ATGGGCCAGATTCCCCCGATGGGCCAGCCTATGGGTCAGACTCCT
Right flanking sequence: Indices 118775 -- 119274
TGGGGATGGTTCCCCCGCCTGGTCAGGTCGGGCAGGTGCCTCCCATGGGCCAGATGCCCGGCCAG
GCACCTCCCCACGGTGCGTACGCACCCCAGGGCCCTCCCCAGGCACAGGCACAGGCACAGGCACC
TCTGGCGTACACCCCTCCCCAGGGTCCTCCCCAGGGTCCTCCTCAGGGTCCTCCTCAGATGCCTC
CCCAGGGCTACCAACCCCAGGGTCTCCAGCCTCCTCAGGGTCCTCATGGTCCTCAGGGTCACCCC
CAAGGTCCTCCTCAGGGTCCTCCCCAAGGTGCCCAGGGCCACCCGCCCAAGCCGCACACCCCCAT
GGGCCTCTCGACGCTGCACCCGCAACAGAAGCCCGGGTTCGCCGCAGCGCTGCCCATGGGCAACA
CCCTGCTGGCGCCCGCAGCGCTGCCCAAGATCAACACCAACCTCCCCCGCGCCCCGGGGCAGGGG
TCGGCCACGGCGCAGTACAACCCCCGCGCGGGGCCCTACGCCCCC
Found at i:118890 original size:6 final size:6
Alignment explanation
Indices: 118879--118903 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
118869 GGGCCCTCCC
118879 CAGGCA CAGGCA CAGGCA CAGGCA C
1 CAGGCA CAGGCA CAGGCA CAGGCA C
118904 CTCTGGCGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.32, C:0.36, G:0.32, T:0.00
Consensus pattern (6 bp):
CAGGCA
Left flanking sequence: Indices 118379 -- 118878
CGAAGGCCAACCAGGCGCCGCCCCCGCAGGCCCAGGCGCCGATCCCCGCGATTGCCCCGCCGCTG
GGGGTGTTTGCCGGCCCCGGCCCCGCCCAGAGCCCGCGCCCCGGGCACCAGGCGCCCGCGGCGAC
GGCGCCCAACCCGTACGCGCCCCAGGGTCCCCCCCAGGGGGCGGGTCCTGCCCCGGGCAAGAACC
CGTACGCGCCCACGGGGCCGGCGATGGCGGCGCCCCCGATGGGAGGCCAGGCCATGGGCCAGTTC
AGCTCGCCCCAGATGGGCCAGATTCCCCCGATGGGCCAGCCTATGGGTCAGACTCCTGGTCAGAC
TCCGCCTATGGGTCAGGTCCCTCCTATGGGTCAGGTTCCTCCTATGGGTCAGGCCCCGCCTATGG
GCCAGATGGGGATGGTTCCCCCGCCTGGTCAGGTCGGGCAGGTGCCTCCCATGGGCCAGATGCCC
GGCCAGGCACCTCCCCACGGTGCGTACGCACCCCAGGGCCCTCCC
Right flanking sequence: Indices 118904 -- 119403
CTCTGGCGTACACCCCTCCCCAGGGTCCTCCCCAGGGTCCTCCTCAGGGTCCTCCTCAGATGCCT
CCCCAGGGCTACCAACCCCAGGGTCTCCAGCCTCCTCAGGGTCCTCATGGTCCTCAGGGTCACCC
CCAAGGTCCTCCTCAGGGTCCTCCCCAAGGTGCCCAGGGCCACCCGCCCAAGCCGCACACCCCCA
TGGGCCTCTCGACGCTGCACCCGCAACAGAAGCCCGGGTTCGCCGCAGCGCTGCCCATGGGCAAC
ACCCTGCTGGCGCCCGCAGCGCTGCCCAAGATCAACACCAACCTCCCCCGCGCCCCGGGGCAGGG
GTCGGCCACGGCGCAGTACAACCCCCGCGCGGGGCCCTACGCCCCCGGCCAGGGCCACGCCCGCA
CCCACTCGCGGGGCGCGTCCCTCGTGGGGCCCATCGCCAAGGACATCAACCCCTACGCCCCGGTG
GAGCACGCAGACCTCCTGGGGATCCGGCCCCGCGGCATCTCCGCC
Found at i:118935 original size:12 final size:12
Alignment explanation
Indices: 118918--118976 Score: 75
Period size: 12 Copynumber: 4.9 Consensus size: 12
118908 GGCGTACACC
118918 CCTCCCCAGGGT
1 CCTCCCCAGGGT
118930 CCTCCCCAGGGT
1 CCTCCCCAGGGT
*
118942 CCTCCTCAGGGT
1 CCTCCCCAGGGT
* *
118954 CCTCCTCA-GAT
1 CCTCCCCAGGGT
118965 GCCTCCCCAGGG
1 -CCTCCCCAGGG
118977 CTACCAACCC
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
11 2 0.05
12 38 0.93
13 1 0.02
ACGTcount: A:0.10, C:0.47, G:0.24, T:0.19
Consensus pattern (12 bp):
CCTCCCCAGGGT
Left flanking sequence: Indices 118418 -- 118917
CGATCCCCGCGATTGCCCCGCCGCTGGGGGTGTTTGCCGGCCCCGGCCCCGCCCAGAGCCCGCGC
CCCGGGCACCAGGCGCCCGCGGCGACGGCGCCCAACCCGTACGCGCCCCAGGGTCCCCCCCAGGG
GGCGGGTCCTGCCCCGGGCAAGAACCCGTACGCGCCCACGGGGCCGGCGATGGCGGCGCCCCCGA
TGGGAGGCCAGGCCATGGGCCAGTTCAGCTCGCCCCAGATGGGCCAGATTCCCCCGATGGGCCAG
CCTATGGGTCAGACTCCTGGTCAGACTCCGCCTATGGGTCAGGTCCCTCCTATGGGTCAGGTTCC
TCCTATGGGTCAGGCCCCGCCTATGGGCCAGATGGGGATGGTTCCCCCGCCTGGTCAGGTCGGGC
AGGTGCCTCCCATGGGCCAGATGCCCGGCCAGGCACCTCCCCACGGTGCGTACGCACCCCAGGGC
CCTCCCCAGGCACAGGCACAGGCACAGGCACCTCTGGCGTACACC
Right flanking sequence: Indices 118977 -- 119476
CTACCAACCCCAGGGTCTCCAGCCTCCTCAGGGTCCTCATGGTCCTCAGGGTCACCCCCAAGGTC
CTCCTCAGGGTCCTCCCCAAGGTGCCCAGGGCCACCCGCCCAAGCCGCACACCCCCATGGGCCTC
TCGACGCTGCACCCGCAACAGAAGCCCGGGTTCGCCGCAGCGCTGCCCATGGGCAACACCCTGCT
GGCGCCCGCAGCGCTGCCCAAGATCAACACCAACCTCCCCCGCGCCCCGGGGCAGGGGTCGGCCA
CGGCGCAGTACAACCCCCGCGCGGGGCCCTACGCCCCCGGCCAGGGCCACGCCCGCACCCACTCG
CGGGGCGCGTCCCTCGTGGGGCCCATCGCCAAGGACATCAACCCCTACGCCCCGGTGGAGCACGC
AGACCTCCTGGGGATCCGGCCCCGCGGCATCTCCGCCGCGCTGTCGCACCAGCGCGGGCTGGGAC
CCAACCTGGTGGCACGGGTGGTCAACCCGGAGGCGCTCCTCCACC
Found at i:119049 original size:24 final size:24
Alignment explanation
Indices: 119019--119064 Score: 76
Period size: 24 Copynumber: 1.9 Consensus size: 24
119009 GTCCTCATGG
119019 TCCTCAGGGTCAC-CCCCAAGGTCC
1 TCCTCAGGGTC-CTCCCCAAGGTCC
119043 TCCTCAGGGTCCTCCCCAAGGT
1 TCCTCAGGGTCCTCCCCAAGGT
119065 GCCCAGGGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.15, C:0.43, G:0.22, T:0.20
Consensus pattern (24 bp):
TCCTCAGGGTCCTCCCCAAGGTCC
Left flanking sequence: Indices 118519 -- 119018
CCGTACGCGCCCCAGGGTCCCCCCCAGGGGGCGGGTCCTGCCCCGGGCAAGAACCCGTACGCGCC
CACGGGGCCGGCGATGGCGGCGCCCCCGATGGGAGGCCAGGCCATGGGCCAGTTCAGCTCGCCCC
AGATGGGCCAGATTCCCCCGATGGGCCAGCCTATGGGTCAGACTCCTGGTCAGACTCCGCCTATG
GGTCAGGTCCCTCCTATGGGTCAGGTTCCTCCTATGGGTCAGGCCCCGCCTATGGGCCAGATGGG
GATGGTTCCCCCGCCTGGTCAGGTCGGGCAGGTGCCTCCCATGGGCCAGATGCCCGGCCAGGCAC
CTCCCCACGGTGCGTACGCACCCCAGGGCCCTCCCCAGGCACAGGCACAGGCACAGGCACCTCTG
GCGTACACCCCTCCCCAGGGTCCTCCCCAGGGTCCTCCTCAGGGTCCTCCTCAGATGCCTCCCCA
GGGCTACCAACCCCAGGGTCTCCAGCCTCCTCAGGGTCCTCATGG
Right flanking sequence: Indices 119065 -- 119564
GCCCAGGGCCACCCGCCCAAGCCGCACACCCCCATGGGCCTCTCGACGCTGCACCCGCAACAGAA
GCCCGGGTTCGCCGCAGCGCTGCCCATGGGCAACACCCTGCTGGCGCCCGCAGCGCTGCCCAAGA
TCAACACCAACCTCCCCCGCGCCCCGGGGCAGGGGTCGGCCACGGCGCAGTACAACCCCCGCGCG
GGGCCCTACGCCCCCGGCCAGGGCCACGCCCGCACCCACTCGCGGGGCGCGTCCCTCGTGGGGCC
CATCGCCAAGGACATCAACCCCTACGCCCCGGTGGAGCACGCAGACCTCCTGGGGATCCGGCCCC
GCGGCATCTCCGCCGCGCTGTCGCACCAGCGCGGGCTGGGACCCAACCTGGTGGCACGGGTGGTC
AACCCGGAGGCGCTCCTCCACCGCCAGTTCCCGTTGTTCTCGTGGCTGGCGGGGAAGAACTGCGC
GGTGGTGATGCCCCTGGCGATGGGGGGTGCCTCCTCCGTCGGAGG
Found at i:121101 original size:9 final size:9
Alignment explanation
Indices: 121089--121118 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
121079 GGTCCCAGCC
121089 GTCCCACGG
1 GTCCCACGG
121098 GTCCCACGG
1 GTCCCACGG
*
121107 GTCGCACGG
1 GTCCCACGG
121116 GTC
1 GTC
121119 GTACCAGCCC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.10, C:0.40, G:0.37, T:0.13
Consensus pattern (9 bp):
GTCCCACGG
Left flanking sequence: Indices 120589 -- 121088
GTGGTGGGAGCCGCCCTCAAGCAGGGCAGATCGCCGTACTTGACTCCAGGGCTCGCCCAGACGTT
CAAACACGTGTGTGCCCGGGTCACCGAGTGCGGAGACTCCGACGAGGCCGGGTGGTTTGGCTCCA
AGGTGGGCAAGGTCAACTTCGACAAGGTGTGGGGGTCCCTCGACAAGTTCATCGGGGGCGAGGAC
CCGCTGGCGAAGAAGCAGCCCAAGGAGGCTGGGCCCTTCAGCAACTTCAGCCCGCTGGTGCTGCG
GACAGCGCTGACGGTGGACCTCCACGCGCCGCAGCCGCTGTTCAACGGGTTCAACCCGATGGAGC
GGGGCGTGCTGACGACGCTGGTGGCCACCTACAGCGGCAAGTACGCGCCTGGAGCGAGCCAGCGC
CCGTCGTTGGTGAGCCAGCCGAGCCACGGTGCGCTTGGCACTCAGCACAGCGGCTCGTACGGGCC
TCTGGGCCTGGCTCTGGCCCTGGCGCCTCCGCTGGGGTCCCAGCC
Right flanking sequence: Indices 121119 -- 121618
GTACCAGCCCGCTCAGCTGGCCTCGGTGGGCCATGCTGTGCTGCCAGCGCGGTCCTACCGGCCTC
CCAGCGTGGCTTCCCACCCCGGGACTCTGCCTGTTCCCCCGATGAGCGAGTTTATGCCGTCGTCG
CCTCCCAGGGGCCCGGGCTCGGCCAAACGGCTGTTCTATGCTAACCCACAGGCCGAGCTGTCGAC
GCTGCTGCTTGCGCTGTCGCGTGGGTTGGCTCCGCTGGCCCACTTGTCGATGGGGCCTCGTGCTG
GGGTGACCGAGAGGGAGGAGAAGGAGGAGAAGGAGTTGGCTCCTCCGATGGTTGCCCAGGCTAAG
GCAGGGGCGGCTAAGAGTGCTGCTGCGCCGCCTAAGGCTGCTCAAGGTGCTTCTTCTGCTCCCAA
GTCTCTGGCTCCGCCTAAGGCTCTGGCTCCGCCTAAGGCTCTGGCTCCGCCTAAGTCTCTGGCTC
CGCCTAAGGCCCAGGCTCCTCCCAAGGAAGAGCCCGAAGCTGAAG
Found at i:121551 original size:36 final size:36
Alignment explanation
Indices: 121511--121592 Score: 137
Period size: 36 Copynumber: 2.3 Consensus size: 36
121501 GCTCCCAAGT
121511 CTCTGGCTCCGCCTAAGGCTCTGGCTCCGCCTAAGG
1 CTCTGGCTCCGCCTAAGGCTCTGGCTCCGCCTAAGG
*
121547 CTCTGGCTCCGCCTAAGTCTCTGGCTCCGCCTAAGG
1 CTCTGGCTCCGCCTAAGGCTCTGGCTCCGCCTAAGG
* *
121583 CCCAGGCTCC
1 CTCTGGCTCC
121593 TCCCAAGGAA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 43 1.00
ACGTcount: A:0.11, C:0.41, G:0.26, T:0.22
Consensus pattern (36 bp):
CTCTGGCTCCGCCTAAGGCTCTGGCTCCGCCTAAGG
Left flanking sequence: Indices 121011 -- 121510
GCTTGGCACTCAGCACAGCGGCTCGTACGGGCCTCTGGGCCTGGCTCTGGCCCTGGCGCCTCCGC
TGGGGTCCCAGCCGTCCCACGGGTCCCACGGGTCGCACGGGTCGTACCAGCCCGCTCAGCTGGCC
TCGGTGGGCCATGCTGTGCTGCCAGCGCGGTCCTACCGGCCTCCCAGCGTGGCTTCCCACCCCGG
GACTCTGCCTGTTCCCCCGATGAGCGAGTTTATGCCGTCGTCGCCTCCCAGGGGCCCGGGCTCGG
CCAAACGGCTGTTCTATGCTAACCCACAGGCCGAGCTGTCGACGCTGCTGCTTGCGCTGTCGCGT
GGGTTGGCTCCGCTGGCCCACTTGTCGATGGGGCCTCGTGCTGGGGTGACCGAGAGGGAGGAGAA
GGAGGAGAAGGAGTTGGCTCCTCCGATGGTTGCCCAGGCTAAGGCAGGGGCGGCTAAGAGTGCTG
CTGCGCCGCCTAAGGCTGCTCAAGGTGCTTCTTCTGCTCCCAAGT
Right flanking sequence: Indices 121593 -- 122092
TCCCAAGGAAGAGCCCGAAGCTGAAGAGCCCGAGGAAGATGTCCAGGAAGAACAGGCTGAGGAGG
TCCAGGACGAGGCTGAACCTCAGCAGGAGGTCCAGGAAGAGACTCAGGAAGAGGCCCAAGAGGCC
CAGGAAGAAACTCCCGAGGAGACTGAGGAACCTGAGACCAAGGAGACTCAGAAGACCGAAGAGCC
TGCTGAAGAGCCTGAAGAGCCCAAGGCCGAACAGGACGAGGCTCCGGCCCCGCCTCCGAAGGCCG
AGTCTGCTCCCAAGTCTGGTCCTTCCAAGTCTGGTCCTCCTAAGTCCTCGAAGCCTGTGGACTCC
AAGTCTTCGGACTCCAAGGCACCAAAGCCTAAACCCGCTGCCTCTTCCGGCCAGGGCGACCTTCC
CGACGACGTGTTTGGCGCTCCACCGCCGAGACGGACTCCCAGAGGCCGTCCCGGGAAAAAGTCGC
TGAAGTACGGCCCCCCCAAGGGCGAAGCGACGGAGAAGCCCGCGG
Found at i:121592 original size:18 final size:18
Alignment explanation
Indices: 121511--121583 Score: 137
Period size: 18 Copynumber: 4.1 Consensus size: 18
121501 GCTCCCAAGT
121511 CTCTGGCTCCGCCTAAGG
1 CTCTGGCTCCGCCTAAGG
121529 CTCTGGCTCCGCCTAAGG
1 CTCTGGCTCCGCCTAAGG
*
121547 CTCTGGCTCCGCCTAAGT
1 CTCTGGCTCCGCCTAAGG
121565 CTCTGGCTCCGCCTAAGG
1 CTCTGGCTCCGCCTAAGG
121583 C
1 C
121584 CCAGGCTCCT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 53 1.00
ACGTcount: A:0.11, C:0.40, G:0.26, T:0.23
Consensus pattern (18 bp):
CTCTGGCTCCGCCTAAGG
Left flanking sequence: Indices 121011 -- 121510
GCTTGGCACTCAGCACAGCGGCTCGTACGGGCCTCTGGGCCTGGCTCTGGCCCTGGCGCCTCCGC
TGGGGTCCCAGCCGTCCCACGGGTCCCACGGGTCGCACGGGTCGTACCAGCCCGCTCAGCTGGCC
TCGGTGGGCCATGCTGTGCTGCCAGCGCGGTCCTACCGGCCTCCCAGCGTGGCTTCCCACCCCGG
GACTCTGCCTGTTCCCCCGATGAGCGAGTTTATGCCGTCGTCGCCTCCCAGGGGCCCGGGCTCGG
CCAAACGGCTGTTCTATGCTAACCCACAGGCCGAGCTGTCGACGCTGCTGCTTGCGCTGTCGCGT
GGGTTGGCTCCGCTGGCCCACTTGTCGATGGGGCCTCGTGCTGGGGTGACCGAGAGGGAGGAGAA
GGAGGAGAAGGAGTTGGCTCCTCCGATGGTTGCCCAGGCTAAGGCAGGGGCGGCTAAGAGTGCTG
CTGCGCCGCCTAAGGCTGCTCAAGGTGCTTCTTCTGCTCCCAAGT
Right flanking sequence: Indices 121584 -- 122083
CCAGGCTCCTCCCAAGGAAGAGCCCGAAGCTGAAGAGCCCGAGGAAGATGTCCAGGAAGAACAGG
CTGAGGAGGTCCAGGACGAGGCTGAACCTCAGCAGGAGGTCCAGGAAGAGACTCAGGAAGAGGCC
CAAGAGGCCCAGGAAGAAACTCCCGAGGAGACTGAGGAACCTGAGACCAAGGAGACTCAGAAGAC
CGAAGAGCCTGCTGAAGAGCCTGAAGAGCCCAAGGCCGAACAGGACGAGGCTCCGGCCCCGCCTC
CGAAGGCCGAGTCTGCTCCCAAGTCTGGTCCTTCCAAGTCTGGTCCTCCTAAGTCCTCGAAGCCT
GTGGACTCCAAGTCTTCGGACTCCAAGGCACCAAAGCCTAAACCCGCTGCCTCTTCCGGCCAGGG
CGACCTTCCCGACGACGTGTTTGGCGCTCCACCGCCGAGACGGACTCCCAGAGGCCGTCCCGGGA
AAAAGTCGCTGAAGTACGGCCCCCCCAAGGGCGAAGCGACGGAGA
Found at i:121882 original size:15 final size:15
Alignment explanation
Indices: 121862--121890 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
121852 GAGTCTGCTC
121862 CCAAGTCTGGTCCTT
1 CCAAGTCTGGTCCTT
121877 CCAAGTCTGGTCCT
1 CCAAGTCTGGTCCT
121891 CCTAAGTCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.34, G:0.21, T:0.31
Consensus pattern (15 bp):
CCAAGTCTGGTCCTT
Left flanking sequence: Indices 121362 -- 121861
GATGGGGCCTCGTGCTGGGGTGACCGAGAGGGAGGAGAAGGAGGAGAAGGAGTTGGCTCCTCCGA
TGGTTGCCCAGGCTAAGGCAGGGGCGGCTAAGAGTGCTGCTGCGCCGCCTAAGGCTGCTCAAGGT
GCTTCTTCTGCTCCCAAGTCTCTGGCTCCGCCTAAGGCTCTGGCTCCGCCTAAGGCTCTGGCTCC
GCCTAAGTCTCTGGCTCCGCCTAAGGCCCAGGCTCCTCCCAAGGAAGAGCCCGAAGCTGAAGAGC
CCGAGGAAGATGTCCAGGAAGAACAGGCTGAGGAGGTCCAGGACGAGGCTGAACCTCAGCAGGAG
GTCCAGGAAGAGACTCAGGAAGAGGCCCAAGAGGCCCAGGAAGAAACTCCCGAGGAGACTGAGGA
ACCTGAGACCAAGGAGACTCAGAAGACCGAAGAGCCTGCTGAAGAGCCTGAAGAGCCCAAGGCCG
AACAGGACGAGGCTCCGGCCCCGCCTCCGAAGGCCGAGTCTGCTC
Right flanking sequence: Indices 121891 -- 122390
CCTAAGTCCTCGAAGCCTGTGGACTCCAAGTCTTCGGACTCCAAGGCACCAAAGCCTAAACCCGC
TGCCTCTTCCGGCCAGGGCGACCTTCCCGACGACGTGTTTGGCGCTCCACCGCCGAGACGGACTC
CCAGAGGCCGTCCCGGGAAAAAGTCGCTGAAGTACGGCCCCCCCAAGGGCGAAGCGACGGAGAAG
CCCGCGGAGAAGCCCCAGGACGAGCCCAAGGACGAACCCAAGCCCGAAACCAAGGCAGAGGCGCC
TGCCCCCGTGGACATGTTCTCCTACGGCGGGTACGAGCTTCCCCCGGCCGACCAAACCGCCAAGG
AGGACGCTGAGCCCGAGCAGGAGCCCGAATCCAAGGACGAGCCCGCGAAGGACGACGCCAAGGCG
GGTCCCCCGGCCCAGCTGACCCCTGAGCCCGTCCACCCGCCCGTGGCCCTGCCTCCCCCGGCGCT
TGGGCCCGCCATGGGGCCTCCCCAGCGCAAGTTGAACCACAAGCC
Found at i:121897 original size:15 final size:14
Alignment explanation
Indices: 121862--121898 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 14
121852 GAGTCTGCTC
121862 CCAAGTCTGGTCCTT
1 CCAAGTCTGGTCC-T
121877 CCAAGTCTGGTCCT
1 CCAAGTCTGGTCCT
121891 CCTAAGTC
1 CC-AAGTC
121899 CTCGAAGCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 3 0.14
15 18 0.86
ACGTcount: A:0.16, C:0.35, G:0.19, T:0.30
Consensus pattern (14 bp):
CCAAGTCTGGTCCT
Left flanking sequence: Indices 121362 -- 121861
GATGGGGCCTCGTGCTGGGGTGACCGAGAGGGAGGAGAAGGAGGAGAAGGAGTTGGCTCCTCCGA
TGGTTGCCCAGGCTAAGGCAGGGGCGGCTAAGAGTGCTGCTGCGCCGCCTAAGGCTGCTCAAGGT
GCTTCTTCTGCTCCCAAGTCTCTGGCTCCGCCTAAGGCTCTGGCTCCGCCTAAGGCTCTGGCTCC
GCCTAAGTCTCTGGCTCCGCCTAAGGCCCAGGCTCCTCCCAAGGAAGAGCCCGAAGCTGAAGAGC
CCGAGGAAGATGTCCAGGAAGAACAGGCTGAGGAGGTCCAGGACGAGGCTGAACCTCAGCAGGAG
GTCCAGGAAGAGACTCAGGAAGAGGCCCAAGAGGCCCAGGAAGAAACTCCCGAGGAGACTGAGGA
ACCTGAGACCAAGGAGACTCAGAAGACCGAAGAGCCTGCTGAAGAGCCTGAAGAGCCCAAGGCCG
AACAGGACGAGGCTCCGGCCCCGCCTCCGAAGGCCGAGTCTGCTC
Right flanking sequence: Indices 121899 -- 122398
CTCGAAGCCTGTGGACTCCAAGTCTTCGGACTCCAAGGCACCAAAGCCTAAACCCGCTGCCTCTT
CCGGCCAGGGCGACCTTCCCGACGACGTGTTTGGCGCTCCACCGCCGAGACGGACTCCCAGAGGC
CGTCCCGGGAAAAAGTCGCTGAAGTACGGCCCCCCCAAGGGCGAAGCGACGGAGAAGCCCGCGGA
GAAGCCCCAGGACGAGCCCAAGGACGAACCCAAGCCCGAAACCAAGGCAGAGGCGCCTGCCCCCG
TGGACATGTTCTCCTACGGCGGGTACGAGCTTCCCCCGGCCGACCAAACCGCCAAGGAGGACGCT
GAGCCCGAGCAGGAGCCCGAATCCAAGGACGAGCCCGCGAAGGACGACGCCAAGGCGGGTCCCCC
GGCCCAGCTGACCCCTGAGCCCGTCCACCCGCCCGTGGCCCTGCCTCCCCCGGCGCTTGGGCCCG
CCATGGGGCCTCCCCAGCGCAAGTTGAACCACAAGCCGCTGCGGA
Found at i:124863 original size:19 final size:19
Alignment explanation
Indices: 124819--124906 Score: 83
Period size: 19 Copynumber: 4.7 Consensus size: 19
124809 TTAGGGTCCT
*
124819 TTACACTGTTCGAGGAT-C
1 TTACAATGTTCGAGGATCC
* *
124837 ATAGCAATGTTCGATGATCC
1 TTA-CAATGTTCGAGGATCC
* * *
124857 TTACAATGATCGAGTAGCC
1 TTACAATGTTCGAGGATCC
124876 TTAC-A-GTTCGAGGATCC
1 TTACAATGTTCGAGGATCC
*
124893 TTACAGTGTTCGAG
1 TTACAATGTTCGAG
124907 AGTAGCTCAA
Statistics
Matches: 54, Mismatches: 12, Indels: 7
0.74 0.16 0.10
Matches are distributed among these distances:
17 13 0.24
18 3 0.06
19 35 0.65
20 3 0.06
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (19 bp):
TTACAATGTTCGAGGATCC
Left flanking sequence: Indices 124319 -- 124818
GAGCATGAACGCCTCTGTCAACACTATTGTTCCCCATGTCGCCAGAAGCACCAAAGCCAAAGCCT
GGAGCCAGGTGTTGGCCAGATCGAGTGCCAGGCACACCCCGCGGCATTTGACGTCTGTGATCCAA
ACAAAGGCACCAACCCATAGCACCCAGTTCACAGTGTCGAGGACAAGCGGAAACTCTATAAGCTC
CCGACCCAAACTAATGGAACTGGCTGTAAACGCGAACAGGAAGATGCCAACAAAAAGCGTATAGA
GTAGAGCTCCTGCTTCCACTTGCAAAAGGCAAAGGACAATCACAGCTGTTGAGGGCAAGACGGAG
AGACTCTTGAAGCATTCACAATAGCTGCGTACGGACATGTTCAATGTGTGCGTGTCTACTAGGAG
TTATATGTTGGAGGGCTGCGGGATTGGAAAGGCCAAGGTTCTTGCTTTCAGCAACTCCAATCGGT
TTAAGCGTTCTGATAGCGTACGAAGGTCCACGAGATTAGGGTCCT
Right flanking sequence: Indices 124907 -- 125406
AGTAGCTCAACGAGTGTAGCTCAACGAGTGAAGCTCAACAAGTGAAGCTCAACGGATGAAGCTGG
AAATGAGCATACAAAGACATTGGTGCAGAATTGGCGTTCCTACGCTGGCATACTTACGTTACTGT
TAAGACCAGAGATCGCAACAGTTATTGATCAAGACCACAAATTGCAACAACTATAGTCACACTAC
TCAGGAGATCTCAACCCACTATATCACGACAAATGGTCAAACTGTTGTGTCATCGTCCGCCCATG
AATGCACCAGCTGACTCGAAGGTGTTTTACGGTATTCGACGTTACCTAGCCACTCTAAGCAGCCT
CCTGCAATGAAAGCCGATTGCATTCTCTCCTCAAACAAAGCCCACCAGACTATCGTTCGAGCAGT
CCACGAACACCCACTTCAATCTAAATCAGCGAGCACCGACTAAAACCCACTCTCTGCTATTTTCC
CCAGCTATTCTACCCCATTTATTCTAACCTGCCAAGCCCCGCAAT
Found at i:124894 original size:17 final size:17
Alignment explanation
Indices: 124845--124899 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
124835 TCATAGCAAT
*
124845 GTTCGATGATCCTTACAA
1 GTTCGAGGATCCTTAC-A
* * *
124863 TGATCGAGTAGCCTTACA
1 -GTTCGAGGATCCTTACA
124881 GTTCGAGGATCCTTACA
1 GTTCGAGGATCCTTACA
124898 GT
1 GT
124900 GTTCGAGAGT
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
17 16 0.55
18 1 0.03
19 12 0.41
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (17 bp):
GTTCGAGGATCCTTACA
Left flanking sequence: Indices 124345 -- 124844
TTGTTCCCCATGTCGCCAGAAGCACCAAAGCCAAAGCCTGGAGCCAGGTGTTGGCCAGATCGAGT
GCCAGGCACACCCCGCGGCATTTGACGTCTGTGATCCAAACAAAGGCACCAACCCATAGCACCCA
GTTCACAGTGTCGAGGACAAGCGGAAACTCTATAAGCTCCCGACCCAAACTAATGGAACTGGCTG
TAAACGCGAACAGGAAGATGCCAACAAAAAGCGTATAGAGTAGAGCTCCTGCTTCCACTTGCAAA
AGGCAAAGGACAATCACAGCTGTTGAGGGCAAGACGGAGAGACTCTTGAAGCATTCACAATAGCT
GCGTACGGACATGTTCAATGTGTGCGTGTCTACTAGGAGTTATATGTTGGAGGGCTGCGGGATTG
GAAAGGCCAAGGTTCTTGCTTTCAGCAACTCCAATCGGTTTAAGCGTTCTGATAGCGTACGAAGG
TCCACGAGATTAGGGTCCTTTACACTGTTCGAGGATCATAGCAAT
Right flanking sequence: Indices 124900 -- 125399
GTTCGAGAGTAGCTCAACGAGTGTAGCTCAACGAGTGAAGCTCAACAAGTGAAGCTCAACGGATG
AAGCTGGAAATGAGCATACAAAGACATTGGTGCAGAATTGGCGTTCCTACGCTGGCATACTTACG
TTACTGTTAAGACCAGAGATCGCAACAGTTATTGATCAAGACCACAAATTGCAACAACTATAGTC
ACACTACTCAGGAGATCTCAACCCACTATATCACGACAAATGGTCAAACTGTTGTGTCATCGTCC
GCCCATGAATGCACCAGCTGACTCGAAGGTGTTTTACGGTATTCGACGTTACCTAGCCACTCTAA
GCAGCCTCCTGCAATGAAAGCCGATTGCATTCTCTCCTCAAACAAAGCCCACCAGACTATCGTTC
GAGCAGTCCACGAACACCCACTTCAATCTAAATCAGCGAGCACCGACTAAAACCCACTCTCTGCT
ATTTTCCCCAGCTATTCTACCCCATTTATTCTAACCTGCCAAGCC
Found at i:124925 original size:14 final size:14
Alignment explanation
Indices: 124910--124969 Score: 86
Period size: 14 Copynumber: 4.3 Consensus size: 14
124900 GTTCGAGAGT
*
124910 AGCTCAACGAGTGT
1 AGCTCAACGAGTGA
124924 AGCTCAACGAGTGA
1 AGCTCAACGAGTGA
*
124938 AGCTCAACAAGTGA
1 AGCTCAACGAGTGA
124952 AGCTCAACG-GATGA
1 AGCTCAACGAG-TGA
124966 AGCT
1 AGCT
124970 GGAAATGAGC
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
13 1 0.02
14 41 0.98
ACGTcount: A:0.35, C:0.22, G:0.27, T:0.17
Consensus pattern (14 bp):
AGCTCAACGAGTGA
Left flanking sequence: Indices 124410 -- 124909
GCCAGGCACACCCCGCGGCATTTGACGTCTGTGATCCAAACAAAGGCACCAACCCATAGCACCCA
GTTCACAGTGTCGAGGACAAGCGGAAACTCTATAAGCTCCCGACCCAAACTAATGGAACTGGCTG
TAAACGCGAACAGGAAGATGCCAACAAAAAGCGTATAGAGTAGAGCTCCTGCTTCCACTTGCAAA
AGGCAAAGGACAATCACAGCTGTTGAGGGCAAGACGGAGAGACTCTTGAAGCATTCACAATAGCT
GCGTACGGACATGTTCAATGTGTGCGTGTCTACTAGGAGTTATATGTTGGAGGGCTGCGGGATTG
GAAAGGCCAAGGTTCTTGCTTTCAGCAACTCCAATCGGTTTAAGCGTTCTGATAGCGTACGAAGG
TCCACGAGATTAGGGTCCTTTACACTGTTCGAGGATCATAGCAATGTTCGATGATCCTTACAATG
ATCGAGTAGCCTTACAGTTCGAGGATCCTTACAGTGTTCGAGAGT
Right flanking sequence: Indices 124970 -- 125469
GGAAATGAGCATACAAAGACATTGGTGCAGAATTGGCGTTCCTACGCTGGCATACTTACGTTACT
GTTAAGACCAGAGATCGCAACAGTTATTGATCAAGACCACAAATTGCAACAACTATAGTCACACT
ACTCAGGAGATCTCAACCCACTATATCACGACAAATGGTCAAACTGTTGTGTCATCGTCCGCCCA
TGAATGCACCAGCTGACTCGAAGGTGTTTTACGGTATTCGACGTTACCTAGCCACTCTAAGCAGC
CTCCTGCAATGAAAGCCGATTGCATTCTCTCCTCAAACAAAGCCCACCAGACTATCGTTCGAGCA
GTCCACGAACACCCACTTCAATCTAAATCAGCGAGCACCGACTAAAACCCACTCTCTGCTATTTT
CCCCAGCTATTCTACCCCATTTATTCTAACCTGCCAAGCCCCGCAATTTAATTCACTAGCGTCTT
AAGCCTTCCCACCAATAAGCTTCTCAACGCCATCATCTATTTTGC
Found at i:125759 original size:22 final size:22
Alignment explanation
Indices: 125731--125774 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
125721 TCTCACTCAG
* *
125731 AACAGCATGCCCTATCCTCGCA
1 AACAGCATACCCCATCCTCGCA
*
125753 AACAGCATACCCCCTCCTCGCA
1 AACAGCATACCCCATCCTCGCA
125775 TGCATTGACC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.27, C:0.45, G:0.11, T:0.16
Consensus pattern (22 bp):
AACAGCATACCCCATCCTCGCA
Left flanking sequence: Indices 125231 -- 125730
TCCTGCAATGAAAGCCGATTGCATTCTCTCCTCAAACAAAGCCCACCAGACTATCGTTCGAGCAG
TCCACGAACACCCACTTCAATCTAAATCAGCGAGCACCGACTAAAACCCACTCTCTGCTATTTTC
CCCAGCTATTCTACCCCATTTATTCTAACCTGCCAAGCCCCGCAATTTAATTCACTAGCGTCTTA
AGCCTTCCCACCAATAAGCTTCTCAACGCCATCATCTATTTTGCAACCTAGTTTGGACAATGCGG
ACACAAAGTGTGAGCTCAGACATCGACCCCAATGGTAATTACCAAACCCATTGTCTCACTAGTTT
CTTTGAGACACACCCACGACCGTATCTTGTATCTTGATCGTATTGATCTGGGCCATTGTCCCATG
TTCGCTTATCTGTCTCATGGCTCAAACGTCATTAGACCAGACAGTAGGCTGCTTCTGCAAAATCT
ACGGCAAAGCAGACGGCAAGCAGAGCGATCCACCGTCTCACTCAG
Right flanking sequence: Indices 125775 -- 126274
TGCATTGACCCCCACTACCACATATTCTCGGTCCTCATGTTACAATGGGCTTATACGAGGTCTAG
AACACCAGCTGTCACCGAACACGTCACCACTAGCCAAGCTCGGAAGCGCCAAAAAACCAATAAAA
ACCCGCCAAAACACGCCACGGCAGCGCACCCCACCAGCCAGACCCCCCACCACCACGCCCAACCC
ACTTTCCGCATCCCCTTTTAAGGTTTGACCTGCGTCCATGCCGTGCCTGAAATGCAGGCGGTTCC
GAGGAAACGGCTCACAGAACACAGCAACGAGACACCTCCAGCGCCAAAACCACGCTCACACGCAC
ACCATCGGCTCCCACGAGATGTGTCACCGCCCGCTGCGTCGTATATTCCCACGTCTACATGAAAA
AATGCACTATTAATAGCAGCATCTCTTGCGTCTGTTTGTTTGTGTTGCGAGCCCGGAAATTTCAC
GAATCAAGGCGGTTACGTGTAAAGTTTTCCATCTGGCTCGTAGCC
Found at i:128240 original size:9 final size:9
Alignment explanation
Indices: 128224--128333 Score: 86
Period size: 9 Copynumber: 12.7 Consensus size: 9
128214 GTGATGCTAC
128224 AGACTGTAA
1 AGACTGTAA
*
128233 ATACTGTAA
1 AGACTGTAA
128242 AGACTGT--
1 AGACTGTAA
*
128249 AGACTGTTA
1 AGACTGTAA
*
128258 AGACCG-ATA
1 AGACTGTA-A
*
128267 AGACTGTTA
1 AGACTGTAA
*
128276 AGACTGTTA
1 AGACTGTAA
* **
128285 AGACTTTTG
1 AGACTGTAA
* *
128294 AGACTTTTA
1 AGACTGTAA
128303 AGACTGT-A
1 AGACTGTAA
128311 AGACTGT-A
1 AGACTGTAA
128319 AGACTGTAA
1 AGACTGTAA
128328 AGACTG
1 AGACTG
128334 CTCACCGATT
Statistics
Matches: 86, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
7 7 0.08
8 16 0.19
9 63 0.73
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.29
Consensus pattern (9 bp):
AGACTGTAA
Left flanking sequence: Indices 127724 -- 128223
CGAACCACATCACCCACGTGGTGGACGACCGGTTGTTCTGGTTCAACGGGGGCATTCGCCGCAAG
GGCACAAGCAGAAAAGACGACTGGGGCGTGCCCGACGACTGGGAGCACCGCGAGCGGTTCAAGCA
CGTGGCCGAGAAGGACTGGGCGCTGTTTGGCCAGCTGACGTTCCCCGTGTCGCACATTGTCATCC
CACCAGACGATATCACCCGTGGAGGCAAGGACAAGATGTTTGCATACAACCGCAACGGGGACCCC
TTGGCGGGGTTCCGGTACCTGGGGCGGCCTGTCCAGTGGTGTGGGTACAACTACCTGGGCGGGCC
CGACAACCGGTTGGACGGGGAGGTGTTGGAGATGCCCCAGGAGGACATTGATGCGTTCAACCGGA
TTGCTGCCGAGTACCTCCGGCCGTACGAGGCCAAGGACTACGGGTACGAGGTTGATGTGACGAGT
AGAGAGTAATGCATGAAGGAGAGGGAAGGTTGAGAGTGATGCTAC
Right flanking sequence: Indices 128334 -- 128833
CTCACCGATTATCGTTGTTGTGGACTAGTGGTAGCTGAGGACCAATAGTAGCTGAGTATCGATCG
CGTAGGAGGTAGGAGACAGGTAGCACGCTCTGGATCTACTGCCTATTCGATTTGTTGGCTCCTAT
ATACCCGTTATGCATCTGACCAAATACGGTAATGATCTAAATATGAGGTAGTTTTGGCAATGAAA
CCTTAATAGGTTACGCAACTAGCTTCTGGATACTGTTACATTTTATAGAACAGAGTCTCTCGACT
ATTGGGCTCAATCTAATTCCATAAACGTATTTCGTACCCTTCGGTCTGAGTAAGAATTCCACCAA
GGCCAAGAACAACAAGAAATCACCAACAGAGGCTTTAGTCCCGTGACTTCTGACCTGAAGCCGTG
CCTCACCAGTTACACTAATAGTCTCTCGACCATTGGGACTCGCATCTAATTCATAACCGCATTTC
GTACCCGATCTGAGTAAGAAATCCACCATGGCTAAGATTGACAAG
Found at i:128272 original size:18 final size:18
Alignment explanation
Indices: 128224--128333 Score: 111
Period size: 18 Copynumber: 6.3 Consensus size: 18
128214 GTGATGCTAC
* * *
128224 AGACTGTAAATACTGTAA
1 AGACTGTTAAGACTGTTA
128242 AGACTG-T-AGACTGTTA
1 AGACTGTTAAGACTGTTA
* *
128258 AGACCGATAAGACTGTTA
1 AGACTGTTAAGACTGTTA
* *
128276 AGACTGTTAAGACTTTTG
1 AGACTGTTAAGACTGTTA
*
128294 AGACTTTTAAGACTG-TA
1 AGACTGTTAAGACTGTTA
*
128311 AGACTG-TAAGACTGTAA
1 AGACTGTTAAGACTGTTA
128328 AGACTG
1 AGACTG
128334 CTCACCGATT
Statistics
Matches: 76, Mismatches: 13, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
16 20 0.26
17 14 0.18
18 42 0.55
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.29
Consensus pattern (18 bp):
AGACTGTTAAGACTGTTA
Left flanking sequence: Indices 127724 -- 128223
CGAACCACATCACCCACGTGGTGGACGACCGGTTGTTCTGGTTCAACGGGGGCATTCGCCGCAAG
GGCACAAGCAGAAAAGACGACTGGGGCGTGCCCGACGACTGGGAGCACCGCGAGCGGTTCAAGCA
CGTGGCCGAGAAGGACTGGGCGCTGTTTGGCCAGCTGACGTTCCCCGTGTCGCACATTGTCATCC
CACCAGACGATATCACCCGTGGAGGCAAGGACAAGATGTTTGCATACAACCGCAACGGGGACCCC
TTGGCGGGGTTCCGGTACCTGGGGCGGCCTGTCCAGTGGTGTGGGTACAACTACCTGGGCGGGCC
CGACAACCGGTTGGACGGGGAGGTGTTGGAGATGCCCCAGGAGGACATTGATGCGTTCAACCGGA
TTGCTGCCGAGTACCTCCGGCCGTACGAGGCCAAGGACTACGGGTACGAGGTTGATGTGACGAGT
AGAGAGTAATGCATGAAGGAGAGGGAAGGTTGAGAGTGATGCTAC
Right flanking sequence: Indices 128334 -- 128833
CTCACCGATTATCGTTGTTGTGGACTAGTGGTAGCTGAGGACCAATAGTAGCTGAGTATCGATCG
CGTAGGAGGTAGGAGACAGGTAGCACGCTCTGGATCTACTGCCTATTCGATTTGTTGGCTCCTAT
ATACCCGTTATGCATCTGACCAAATACGGTAATGATCTAAATATGAGGTAGTTTTGGCAATGAAA
CCTTAATAGGTTACGCAACTAGCTTCTGGATACTGTTACATTTTATAGAACAGAGTCTCTCGACT
ATTGGGCTCAATCTAATTCCATAAACGTATTTCGTACCCTTCGGTCTGAGTAAGAATTCCACCAA
GGCCAAGAACAACAAGAAATCACCAACAGAGGCTTTAGTCCCGTGACTTCTGACCTGAAGCCGTG
CCTCACCAGTTACACTAATAGTCTCTCGACCATTGGGACTCGCATCTAATTCATAACCGCATTTC
GTACCCGATCTGAGTAAGAAATCCACCATGGCTAAGATTGACAAG
Found at i:128283 original size:27 final size:26
Alignment explanation
Indices: 128224--128333 Score: 109
Period size: 25 Copynumber: 4.2 Consensus size: 26
128214 GTGATGCTAC
* *
128224 AGACTGTAAATACTGTAAAGACTG-T-
1 AGACTGTTAAGACTGT-AAGACTGTTA
*
128249 AGACTGTTAAGACCGATAAGACTGTTA
1 AGACTGTTAAGACTG-TAAGACTGTTA
* * *
128276 AGACTGTTAAGACTTTTGAGACTTTTA
1 AGACTGTTAAGAC-TGTAAGACTGTTA
*
128303 AGACTG-TAAGACTGTAAGACTGTAA
1 AGACTGTTAAGACTGTAAGACTGTTA
128328 AGACTG
1 AGACTG
128334 CTCACCGATT
Statistics
Matches: 70, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
25 34 0.49
26 8 0.11
27 28 0.40
ACGTcount: A:0.36, C:0.13, G:0.22, T:0.29
Consensus pattern (26 bp):
AGACTGTTAAGACTGTAAGACTGTTA
Left flanking sequence: Indices 127724 -- 128223
CGAACCACATCACCCACGTGGTGGACGACCGGTTGTTCTGGTTCAACGGGGGCATTCGCCGCAAG
GGCACAAGCAGAAAAGACGACTGGGGCGTGCCCGACGACTGGGAGCACCGCGAGCGGTTCAAGCA
CGTGGCCGAGAAGGACTGGGCGCTGTTTGGCCAGCTGACGTTCCCCGTGTCGCACATTGTCATCC
CACCAGACGATATCACCCGTGGAGGCAAGGACAAGATGTTTGCATACAACCGCAACGGGGACCCC
TTGGCGGGGTTCCGGTACCTGGGGCGGCCTGTCCAGTGGTGTGGGTACAACTACCTGGGCGGGCC
CGACAACCGGTTGGACGGGGAGGTGTTGGAGATGCCCCAGGAGGACATTGATGCGTTCAACCGGA
TTGCTGCCGAGTACCTCCGGCCGTACGAGGCCAAGGACTACGGGTACGAGGTTGATGTGACGAGT
AGAGAGTAATGCATGAAGGAGAGGGAAGGTTGAGAGTGATGCTAC
Right flanking sequence: Indices 128334 -- 128833
CTCACCGATTATCGTTGTTGTGGACTAGTGGTAGCTGAGGACCAATAGTAGCTGAGTATCGATCG
CGTAGGAGGTAGGAGACAGGTAGCACGCTCTGGATCTACTGCCTATTCGATTTGTTGGCTCCTAT
ATACCCGTTATGCATCTGACCAAATACGGTAATGATCTAAATATGAGGTAGTTTTGGCAATGAAA
CCTTAATAGGTTACGCAACTAGCTTCTGGATACTGTTACATTTTATAGAACAGAGTCTCTCGACT
ATTGGGCTCAATCTAATTCCATAAACGTATTTCGTACCCTTCGGTCTGAGTAAGAATTCCACCAA
GGCCAAGAACAACAAGAAATCACCAACAGAGGCTTTAGTCCCGTGACTTCTGACCTGAAGCCGTG
CCTCACCAGTTACACTAATAGTCTCTCGACCATTGGGACTCGCATCTAATTCATAACCGCATTTC
GTACCCGATCTGAGTAAGAAATCCACCATGGCTAAGATTGACAAG
Done.