Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold5
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 171943
ACGTcount: A:0.25, C:0.26, G:0.26, T:0.24
Found at i:37 original size:26 final size:26
Alignment explanation
Indices: 1--98 Score: 196
Period size: 26 Copynumber: 3.8 Consensus size: 26
1 CCGCAAATGCTGAGAAAAGATTCTAA
1 CCGCAAATGCTGAGAAAAGATTCTAA
27 CCGCAAATGCTGAGAAAAGATTCTAA
1 CCGCAAATGCTGAGAAAAGATTCTAA
53 CCGCAAATGCTGAGAAAAGATTCTAA
1 CCGCAAATGCTGAGAAAAGATTCTAA
79 CCGCAAATGCTGAGAAAAGA
1 CCGCAAATGCTGAGAAAAGA
99 ACGCTATGAT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 72 1.00
ACGTcount: A:0.43, C:0.19, G:0.20, T:0.17
Consensus pattern (26 bp):
CCGCAAATGCTGAGAAAAGATTCTAA
Left flanking sequence: None
Right flanking sequence: Indices 99 -- 598
ACGCTATGATCCAGTCGCTCGTGTCCAGAATTATGGACAGCAGCCCGTCTGCTCCGGCTTCTGTC
CCGGCGCTGCTGACTCCTGTGTTTCAGGATCACCCCGCGCCCCCGGCCGACCCAGGTGTTTCGGA
CTCCACCGCTCAGTCCGTACCGCCTGACAACGTCCGAGGCGGGCACGCCGCCGCAACTGGACCTG
GAACGTTTGTCTTCAACCGTCCCAACACGTCCACGGGCAAGTACCACCCCGGCTGGACTAACGAA
CGGATGGGCAGTTACGACCCTGGTTCGCCACCCTGTGACGACCTCGACAAAGGTAGGGGAGACTC
CAATGGAAACGTTTCTGGCTTCTCGTCCAACCAAGGTAACACTACCTTCAACAAAGACGACCCCG
TTGAACAAATCCAGAAATTTCTTAAGCAAGACTTCAAGTCTGAAATGACTAAGAAGGAAGTGCAA
TCGTACTTCATTTCAAACGAAAGGCGCCTCCGCACGGCCCAACAG
Found at i:3946 original size:57 final size:57
Alignment explanation
Indices: 3854--3961 Score: 146
Period size: 57 Copynumber: 1.9 Consensus size: 57
3844 GGAGTGGCAT
* *
3854 ATCCAAAGAGTGGCGACAGGAGACTGAGCATGCTAAGAAGATGAAGCGCATGGAGCG
1 ATCCAAAGAATGGCGACAGGAGACTGAGCACGCTAAGAAGATGAAGCGCATGGAGCG
* * * *
3911 ATCCAAAGAATTGCGACAGGCGA-TAGAGCACGCTAAGACGGTGAAGCGCAT
1 ATCCAAAGAATGGCGACAGGAGACT-GAGCACGCTAAGAAGATGAAGCGCAT
3962 TGTGAGATCC
Statistics
Matches: 44, Mismatches: 6, Indels: 2
0.85 0.12 0.04
Matches are distributed among these distances:
56 1 0.02
57 43 0.98
ACGTcount: A:0.35, C:0.19, G:0.32, T:0.13
Consensus pattern (57 bp):
ATCCAAAGAATGGCGACAGGAGACTGAGCACGCTAAGAAGATGAAGCGCATGGAGCG
Left flanking sequence: Indices 3354 -- 3853
GACGGACCGCTGGTGTTCTACCCTGAGTTCACGCCGCGAAGTGCACTCCAGGAACCGGAACCTAC
CATTGAACATGGCGAACCACCACTCACACCTGCTCGCGACATTGAGGATGCGACTGATAGTACAG
TGGGACCTACCGTGCCTGCACCAGTAACCTTGACGGGGTTCACTTCTACTGAGGTGCCGAGTGAC
GAGCCAGACGTGGAGCTTACCACGGCTGATCGCGATATGTTCGACGACACACAACCGGTCCCGAC
CACTACCGACGAGGCACAAGTGACAGATATGACAGAGCCAGATGGTATCAATGCGGATTCTGCCG
TACCTCCATCAGATGAGCCAATGGATCCACAGGAAGAGGCAGCCGAACAGGAGGGAGAACCCATG
GATCAGGAGGGAGAAGAACGGCATCAAATCCCTAACAACCTTCGGATCAACATGACGGGGATGCC
CACTGACATTGACATATCCCGCAAACGCAAGACCCGGAGTGGCAT
Right flanking sequence: Indices 3962 -- 4461
TGTGAGATCCATTCGCCGAGTACGAGTGAATTTGGCTTCACCACTGACGGAAGATGACAACTCGC
CATTGGATAAATTAACCACGAATTTCGTCGAGCAAGCGGTTACCAGGGAACACGGTTCGTGGCAA
GATATCCCTGTGGAGTACTTTCGGCCAGCTGGAGACTCCTCAAGCCTCGCTGTGCGTGCAATAAA
GAAAAAGCCTGGGATTACGCAGAAGGAGGCCGACCGCATTCCTGGCATGCAAGACGCCATTCAAA
GTGAACTTGACGCTCACGCCAAGAGAGGCACATGGGGACCCGAACCTATCTATGACGTTAGCCCC
CACATCAAAACCCGCACTATTGGTACGCGCTGGGTTTACGCGATGAAGAATGTCTTACTGGATTT
AGGCGATTACCTAGGTGAAAAACCCAAAGCCCGACTAGTAGCTAGGGGCGATCACCAAGATCCGA
CGACCTACAGTGAAACGTATGCGCCAACGTTAATGATGGAAGTGT
Found at i:18772 original size:22 final size:22
Alignment explanation
Indices: 18744--18788 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
18734 ACAAAAAACC
*
18744 CTTTCCTCTTTGCGGTTCCACA
1 CTTTCCTATTTGCGGTTCCACA
18766 CTTTCCTATTTGCGGTTCCACA
1 CTTTCCTATTTGCGGTTCCACA
18788 C
1 C
18789 GGGTTCGTCC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.11, C:0.36, G:0.13, T:0.40
Consensus pattern (22 bp):
CTTTCCTATTTGCGGTTCCACA
Left flanking sequence: Indices 18244 -- 18743
GTCCAAGCCCGCGGTCATTGCTGTTCTCTACGCTCTGGACGTCGAGGACCAATACGGTGCCGACC
AGGTGACCGCTTACGCCGACCTGGCCCTCACCGACATGGAAGGTAAGCTTCCTGAGGACGTTGAG
TCTGACGAGGGCAAGCCTGTGATCAATATCCCCAAGATTTCTGCTGGTGCTCTCAAGGTCCCCTG
GTCGTTGAATGAAAAGGCTCTTTTTAGACACGACAAGCTCAAATTCAACGTGTACTCGCTCGAAA
AGGGGTGGCCGGAACACGAAAACGACGAGGACCCCAACTCGCTCAACCGTTTGCCTGTTGGTTAA
ACCAAACCCCGACATAGAGAAATAAACACACACCCGTAATACAGAAAACTGGAGATAATCCAAAC
ACCACTATGACACGTTAGTACCGTGTCATCCTCCCCTCCTGTACCTTAGCCAACTACTTTCTCCA
AGAACCTATATTTATCAGTAACCGGTATACTATGTACAAAAAACC
Right flanking sequence: Indices 18789 -- 19288
GGGTTCGTCCTCGGGCCTGCGGGACACTCTCACGATCTCATAGTCATTGTTCAGAGCTACTTCCT
TGTTGTGGTCATTCAAAAGACCTTGCAACCGGTAGTAGTCGTTCTTTTTGTCCACGGGACGCTTG
TTCTCAATCAAACTAAGCATCTCCTCCTCGTTAAGCTGCTGGTGCTTCTCATCGTAGCGTTCCCA
CTTGACGGCGGTAAACTTTTGGAGATAGATCAGCCCGGCCACGATCGAGAGCATGAAGGGAAGCC
CGAAGTAAAGGAAGTGGTTGCGCTTTAAGAGCCTCTGATAACGTCCAGCAAACGTTCTGTCATAT
TCCGCTTGTTCTTTGGCACCTCGGAACGGCTTGGACCCCAAGTACACCATTGTCTGATTTTTTTG
ATCGTGAGTCTGCTGTAATATGCATGGCACTGGGGTTTGCTTCAACTTGGCACCATTCAGCGAAG
AGTTAGGCTAGATACTTAAGAGCCCTACCAAACATCGAAGACAGG
Found at i:20710 original size:36 final size:36
Alignment explanation
Indices: 20670--20740 Score: 97
Period size: 36 Copynumber: 2.0 Consensus size: 36
20660 CGACAAGCTT
* * *
20670 GTGCCCGGTGTACCTCAATTACCTGGTGTTCCTGAG
1 GTGCCCGGTGTACCTCAAGTACCCGGTGTACCTGAG
* *
20706 GTGCCTGGTGTACCTGAAGTACCCGGTGTACCTGA
1 GTGCCCGGTGTACCTCAAGTACCCGGTGTACCTGA
20741 CCTTCCTGCC
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 30 1.00
ACGTcount: A:0.15, C:0.27, G:0.30, T:0.28
Consensus pattern (36 bp):
GTGCCCGGTGTACCTCAAGTACCCGGTGTACCTGAG
Left flanking sequence: Indices 20170 -- 20669
TTAAATGGATTTGAGCAAAGTAGCAAAGCTGAGAAACGTATGTCTCTCGAAAGCTGATTGTCTCG
AATTCCAAGTACCACCTCGATCAATCCAGCCACATTCCAACAATACCATTGTTGGCACGCCCCAG
GTGGGCCCGACCCGTATATAAAAGCACTAACTAAGTTAGCCTAGTCTGTATTCAACTACTCTCTT
CAATGCAACTCAGAAACATTCTCTTGACCGCTGTTCTCGCTGCTGCCGCTCCTACCCCTACCGAC
TTGCCGGTGGATGTTCCCAAGCCCGACACGACCTCACCTGAAAATGTGGTCAGCAACCTCCTGGA
CCTTTTGGGCAACGTGGGTTTACCTCTCCCCTCGGGTGCTCCTTCGAACGGTGCCAACCCTCTTG
CGGGTCTCCCCGTTGACAACTTGTTCACTGACAACCCTCTCAGCAACCTCTTGGGCCTGGTTGCG
AACTTGTTGAACAAGTTGTTGAGTGGCTTGGGTCTCGACAAGCTT
Right flanking sequence: Indices 20741 -- 21240
CCTTCCTGCCGGAGCTCAGGCATCCTAATTAGGAATGTAACATTAAATGAATGATCTACTTAACT
CGGCGCTGCCCGATACTCGCTTCACCCCAGCCAGGGAAAAAGCTACGATTCACCTCAGGCACGTA
AAGATTATAATTGAACAGGTTTTTCGTCACCGCACTGAGCAAGTTCCTTAACAAAGGACTCGCCC
CAGTAGCCCAGGGTGAATTTTTTGATGTAGGCAAACAATTTGGAAAAGTTGAGCTCCTTCTTCTC
CTTAGGGAGAGTCAACAGCTCAAGGATGGCCTCGCTCAACTCTTCGGTGTTCCAGGGGTTGACGA
TTATAGCTCCATTCAACAGCTGGGCGGCACCAGCAAACTCCAGCAAAATAAGCGCACCCTGTTTC
TGCTGTTGACAAGCAATGTACTCGTAACTCACCAAGTTCATCCCATCACGGGTCAGCGACACTAA
GCACACATCCAGCACCGCGTACAACGAAATCAATTCGTCAAAGTT
Found at i:20733 original size:18 final size:18
Alignment explanation
Indices: 20673--20740 Score: 73
Period size: 18 Copynumber: 3.8 Consensus size: 18
20663 CAAGCTTGTG
* *
20673 CCCGGTGTACCTCAATTA
1 CCCGGTGTACCTGAAGTA
* * * *
20691 CCTGGTGTTCCTGAGGTG
1 CCCGGTGTACCTGAAGTA
*
20709 CCTGGTGTACCTGAAGTA
1 CCCGGTGTACCTGAAGTA
20727 CCCGGTGTACCTGA
1 CCCGGTGTACCTGA
20741 CCTTCCTGCC
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 40 1.00
ACGTcount: A:0.16, C:0.28, G:0.28, T:0.28
Consensus pattern (18 bp):
CCCGGTGTACCTGAAGTA
Left flanking sequence: Indices 20173 -- 20672
AATGGATTTGAGCAAAGTAGCAAAGCTGAGAAACGTATGTCTCTCGAAAGCTGATTGTCTCGAAT
TCCAAGTACCACCTCGATCAATCCAGCCACATTCCAACAATACCATTGTTGGCACGCCCCAGGTG
GGCCCGACCCGTATATAAAAGCACTAACTAAGTTAGCCTAGTCTGTATTCAACTACTCTCTTCAA
TGCAACTCAGAAACATTCTCTTGACCGCTGTTCTCGCTGCTGCCGCTCCTACCCCTACCGACTTG
CCGGTGGATGTTCCCAAGCCCGACACGACCTCACCTGAAAATGTGGTCAGCAACCTCCTGGACCT
TTTGGGCAACGTGGGTTTACCTCTCCCCTCGGGTGCTCCTTCGAACGGTGCCAACCCTCTTGCGG
GTCTCCCCGTTGACAACTTGTTCACTGACAACCCTCTCAGCAACCTCTTGGGCCTGGTTGCGAAC
TTGTTGAACAAGTTGTTGAGTGGCTTGGGTCTCGACAAGCTTGTG
Right flanking sequence: Indices 20741 -- 21240
CCTTCCTGCCGGAGCTCAGGCATCCTAATTAGGAATGTAACATTAAATGAATGATCTACTTAACT
CGGCGCTGCCCGATACTCGCTTCACCCCAGCCAGGGAAAAAGCTACGATTCACCTCAGGCACGTA
AAGATTATAATTGAACAGGTTTTTCGTCACCGCACTGAGCAAGTTCCTTAACAAAGGACTCGCCC
CAGTAGCCCAGGGTGAATTTTTTGATGTAGGCAAACAATTTGGAAAAGTTGAGCTCCTTCTTCTC
CTTAGGGAGAGTCAACAGCTCAAGGATGGCCTCGCTCAACTCTTCGGTGTTCCAGGGGTTGACGA
TTATAGCTCCATTCAACAGCTGGGCGGCACCAGCAAACTCCAGCAAAATAAGCGCACCCTGTTTC
TGCTGTTGACAAGCAATGTACTCGTAACTCACCAAGTTCATCCCATCACGGGTCAGCGACACTAA
GCACACATCCAGCACCGCGTACAACGAAATCAATTCGTCAAAGTT
Found at i:25057 original size:9 final size:9
Alignment explanation
Indices: 25043--25095 Score: 63
Period size: 9 Copynumber: 5.9 Consensus size: 9
25033 CTTCAAGACG
25043 TCGTCATCA
1 TCGTCATCA
25052 TCGTCATC-
1 TCGTCATCA
* *
25060 GCTGTCATCG
1 TC-GTCATCA
*
25070 TCATCATCA
1 TCGTCATCA
25079 TCGTCATCA
1 TCGTCATCA
25088 TCGTCATC
1 TCGTCATC
25096 GTTGTCGTCG
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
8 1 0.03
9 35 0.95
10 1 0.03
ACGTcount: A:0.19, C:0.34, G:0.13, T:0.34
Consensus pattern (9 bp):
TCGTCATCA
Left flanking sequence: Indices 24543 -- 25042
ACAATCACTTTACCGAGTTTTTCGTTTCTCGTACATTGCATTAAACATTGGGTATTTTAACGAAG
ACTGGACAATAACGGGTCCAATCTTCTCAACAACTAACTTAGACAAACACTCTGAGCTTAACCTT
CTCGCCGTCCTTGCACTTCTTAGTGGACAAAGTGTAAGTGGTGTTGGTGCGAGGAAGGGGGCACG
CACGCCAAGTGTGCTGACCTCTCCAGAACAATCTGTTCTCGTAGATTCTCCAGCCATTCTTGGTC
AGGTTGGTCTGCTGGGCCTTCTGGGTGCTGTTGGCCAACTCAACAGTGTGGTCGTCGAAGACAAC
ACCGGTACCGTTGATGGCAGCCAACGAGGAGTTCTTGAGGTTGAAGTAAACGTCCTTACCGTAAC
GGGCAGCAACCAACTGGCCAGTGCCGTTACCTTGCTTCAAAGAAACCAACTGGTCGTCATCGTCG
TTGAAGTCAACAATGATGCGGAAGCTCTTGAGGTTCTTCAAGACG
Right flanking sequence: Indices 25096 -- 25595
GTTGTCGTCGCCATCGTTGTCATCGTCGTTGTCATCACCATCGTTGTCGTTGTCGTTGTCGTCAC
CGTCGTTGTCGTTGTCGTCACCATCGTTGTCATTGTCGTTGTCATTGTTCAGGTTCTGGTTGTTA
GCACCACCAGAGTTACCCTGGTTGCTGATCTGGTGGTCATCGTCGTCGTCGTCATCTCTAGTGAC
AAGGTTGTTCAAAACCTCAGGCTTGAGGTAAGCCAAGGGAGAAGCGGCAACAGCGGTAGCAAGAG
CAAGCAAAGTGAACTTCATGATTAATTGATTGACCAAGATTTACGGCGAACTGCGTTCTTTTATA
ATTCGAATATTCCATTTGGCCCGGCAGTACCCTTTGGTCATAGCACAGCGGGATTTTGGTTGCAA
AACATGCATGCAGCCGAGTTGCCGCCAAGAAGGCTCATAACCCTGGGACTAGGGCAAAGTATCGA
CAAATGCTGCGACAGCACCGAGTAACCACCCAAAAGTGGTCGGGT
Found at i:25110 original size:15 final size:15
Alignment explanation
Indices: 25092--25172 Score: 66
Period size: 15 Copynumber: 5.8 Consensus size: 15
25082 TCATCATCGT
25092 CATCGTTGTCGTCGC
1 CATCGTTGTCGTCGC
*
25107 CATCGTTGTCATCG-
1 CATCGTTGTCGTCGC
* *
25121 --TCGTTGTCATCAC
1 CATCGTTGTCGTCGC
*
25134 CATCGTTGTCGTTG-
1 CATCGTTGTCGTCGC
*
25148 --TCGTTGTCGTCAC
1 CATCGTTGTCGTCGC
*
25161 CGTCGTTGTCGT
1 CATCGTTGTCGT
25173 TGTCGTCACC
Statistics
Matches: 53, Mismatches: 7, Indels: 12
0.74 0.10 0.17
Matches are distributed among these distances:
12 21 0.40
15 32 0.60
ACGTcount: A:0.09, C:0.28, G:0.25, T:0.38
Consensus pattern (15 bp):
CATCGTTGTCGTCGC
Left flanking sequence: Indices 24592 -- 25091
GGGTATTTTAACGAAGACTGGACAATAACGGGTCCAATCTTCTCAACAACTAACTTAGACAAACA
CTCTGAGCTTAACCTTCTCGCCGTCCTTGCACTTCTTAGTGGACAAAGTGTAAGTGGTGTTGGTG
CGAGGAAGGGGGCACGCACGCCAAGTGTGCTGACCTCTCCAGAACAATCTGTTCTCGTAGATTCT
CCAGCCATTCTTGGTCAGGTTGGTCTGCTGGGCCTTCTGGGTGCTGTTGGCCAACTCAACAGTGT
GGTCGTCGAAGACAACACCGGTACCGTTGATGGCAGCCAACGAGGAGTTCTTGAGGTTGAAGTAA
ACGTCCTTACCGTAACGGGCAGCAACCAACTGGCCAGTGCCGTTACCTTGCTTCAAAGAAACCAA
CTGGTCGTCATCGTCGTTGAAGTCAACAATGATGCGGAAGCTCTTGAGGTTCTTCAAGACGTCGT
CATCATCGTCATCGCTGTCATCGTCATCATCATCGTCATCATCGT
Right flanking sequence: Indices 25173 -- 25672
TGTCGTCACCATCGTTGTCATTGTCGTTGTCATTGTTCAGGTTCTGGTTGTTAGCACCACCAGAG
TTACCCTGGTTGCTGATCTGGTGGTCATCGTCGTCGTCGTCATCTCTAGTGACAAGGTTGTTCAA
AACCTCAGGCTTGAGGTAAGCCAAGGGAGAAGCGGCAACAGCGGTAGCAAGAGCAAGCAAAGTGA
ACTTCATGATTAATTGATTGACCAAGATTTACGGCGAACTGCGTTCTTTTATAATTCGAATATTC
CATTTGGCCCGGCAGTACCCTTTGGTCATAGCACAGCGGGATTTTGGTTGCAAAACATGCATGCA
GCCGAGTTGCCGCCAAGAAGGCTCATAACCCTGGGACTAGGGCAAAGTATCGACAAATGCTGCGA
CAGCACCGAGTAACCACCCAAAAGTGGTCGGGTCCAACTGAAATAAGATTCGAATGGATCTCGGT
TGTTAAATTTCCTTGTTTCGCGGCCTAAAAGTCTCATGTTTGCAA
Found at i:25136 original size:27 final size:27
Alignment explanation
Indices: 25094--25203 Score: 133
Period size: 27 Copynumber: 4.3 Consensus size: 27
25084 ATCATCGTCA
* *
25094 TCGTTGTCGTCGCCATCGTTGTCATCG
1 TCGTTGTCGTCACCATCGTTGTCATTG
* *
25121 TCGTTGTCATCACCATCGTTGTCGTTG
1 TCGTTGTCGTCACCATCGTTGTCATTG
*
25148 TCGTTGTCGTCA-C--C---GTCGTTG
1 TCGTTGTCGTCACCATCGTTGTCATTG
25169 TCGTTGTCGTCACCATCGTTGTCATTG
1 TCGTTGTCGTCACCATCGTTGTCATTG
25196 TCGTTGTC
1 TCGTTGTC
25204 ATTGTTCAGG
Statistics
Matches: 71, Mismatches: 6, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
21 19 0.27
22 1 0.01
24 2 0.03
26 1 0.01
27 48 0.68
ACGTcount: A:0.08, C:0.27, G:0.25, T:0.40
Consensus pattern (27 bp):
TCGTTGTCGTCACCATCGTTGTCATTG
Left flanking sequence: Indices 24594 -- 25093
GTATTTTAACGAAGACTGGACAATAACGGGTCCAATCTTCTCAACAACTAACTTAGACAAACACT
CTGAGCTTAACCTTCTCGCCGTCCTTGCACTTCTTAGTGGACAAAGTGTAAGTGGTGTTGGTGCG
AGGAAGGGGGCACGCACGCCAAGTGTGCTGACCTCTCCAGAACAATCTGTTCTCGTAGATTCTCC
AGCCATTCTTGGTCAGGTTGGTCTGCTGGGCCTTCTGGGTGCTGTTGGCCAACTCAACAGTGTGG
TCGTCGAAGACAACACCGGTACCGTTGATGGCAGCCAACGAGGAGTTCTTGAGGTTGAAGTAAAC
GTCCTTACCGTAACGGGCAGCAACCAACTGGCCAGTGCCGTTACCTTGCTTCAAAGAAACCAACT
GGTCGTCATCGTCGTTGAAGTCAACAATGATGCGGAAGCTCTTGAGGTTCTTCAAGACGTCGTCA
TCATCGTCATCGCTGTCATCGTCATCATCATCGTCATCATCGTCA
Right flanking sequence: Indices 25204 -- 25703
ATTGTTCAGGTTCTGGTTGTTAGCACCACCAGAGTTACCCTGGTTGCTGATCTGGTGGTCATCGT
CGTCGTCGTCATCTCTAGTGACAAGGTTGTTCAAAACCTCAGGCTTGAGGTAAGCCAAGGGAGAA
GCGGCAACAGCGGTAGCAAGAGCAAGCAAAGTGAACTTCATGATTAATTGATTGACCAAGATTTA
CGGCGAACTGCGTTCTTTTATAATTCGAATATTCCATTTGGCCCGGCAGTACCCTTTGGTCATAG
CACAGCGGGATTTTGGTTGCAAAACATGCATGCAGCCGAGTTGCCGCCAAGAAGGCTCATAACCC
TGGGACTAGGGCAAAGTATCGACAAATGCTGCGACAGCACCGAGTAACCACCCAAAAGTGGTCGG
GTCCAACTGAAATAAGATTCGAATGGATCTCGGTTGTTAAATTTCCTTGTTTCGCGGCCTAAAAG
TCTCATGTTTGCAAATATCCGTGTGACCTCGCGAGCAAATCCATG
Found at i:25144 original size:21 final size:21
Alignment explanation
Indices: 25142--25199 Score: 98
Period size: 21 Copynumber: 2.8 Consensus size: 21
25132 ACCATCGTTG
*
25142 TCGTTGTCGTTGTCGTCACCG
1 TCGTTGTCGTTGTCGTCACCA
25163 TCGTTGTCGTTGTCGTCACCA
1 TCGTTGTCGTTGTCGTCACCA
*
25184 TCGTTGTCATTGTCGT
1 TCGTTGTCGTTGTCGT
25200 TGTCATTGTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.07, C:0.26, G:0.26, T:0.41
Consensus pattern (21 bp):
TCGTTGTCGTTGTCGTCACCA
Left flanking sequence: Indices 24642 -- 25141
TAACTTAGACAAACACTCTGAGCTTAACCTTCTCGCCGTCCTTGCACTTCTTAGTGGACAAAGTG
TAAGTGGTGTTGGTGCGAGGAAGGGGGCACGCACGCCAAGTGTGCTGACCTCTCCAGAACAATCT
GTTCTCGTAGATTCTCCAGCCATTCTTGGTCAGGTTGGTCTGCTGGGCCTTCTGGGTGCTGTTGG
CCAACTCAACAGTGTGGTCGTCGAAGACAACACCGGTACCGTTGATGGCAGCCAACGAGGAGTTC
TTGAGGTTGAAGTAAACGTCCTTACCGTAACGGGCAGCAACCAACTGGCCAGTGCCGTTACCTTG
CTTCAAAGAAACCAACTGGTCGTCATCGTCGTTGAAGTCAACAATGATGCGGAAGCTCTTGAGGT
TCTTCAAGACGTCGTCATCATCGTCATCGCTGTCATCGTCATCATCATCGTCATCATCGTCATCG
TTGTCGTCGCCATCGTTGTCATCGTCGTTGTCATCACCATCGTTG
Right flanking sequence: Indices 25200 -- 25699
TGTCATTGTTCAGGTTCTGGTTGTTAGCACCACCAGAGTTACCCTGGTTGCTGATCTGGTGGTCA
TCGTCGTCGTCGTCATCTCTAGTGACAAGGTTGTTCAAAACCTCAGGCTTGAGGTAAGCCAAGGG
AGAAGCGGCAACAGCGGTAGCAAGAGCAAGCAAAGTGAACTTCATGATTAATTGATTGACCAAGA
TTTACGGCGAACTGCGTTCTTTTATAATTCGAATATTCCATTTGGCCCGGCAGTACCCTTTGGTC
ATAGCACAGCGGGATTTTGGTTGCAAAACATGCATGCAGCCGAGTTGCCGCCAAGAAGGCTCATA
ACCCTGGGACTAGGGCAAAGTATCGACAAATGCTGCGACAGCACCGAGTAACCACCCAAAAGTGG
TCGGGTCCAACTGAAATAAGATTCGAATGGATCTCGGTTGTTAAATTTCCTTGTTTCGCGGCCTA
AAAGTCTCATGTTTGCAAATATCCGTGTGACCTCGCGAGCAAATC
Found at i:25145 original size:6 final size:6
Alignment explanation
Indices: 25136--25178 Score: 50
Period size: 6 Copynumber: 6.7 Consensus size: 6
25126 GTCATCACCA
*
25136 TCGTTG TCGTTG TCGTTG TCGTCACCG TCGTTG TCGTTG TCGT
1 TCGTTG TCGTTG TCGTTG TCGT---TG TCGTTG TCGTTG TCGT
25179 CACCATCGTT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
6 27 0.84
9 5 0.16
ACGTcount: A:0.02, C:0.23, G:0.30, T:0.44
Consensus pattern (6 bp):
TCGTTG
Left flanking sequence: Indices 24636 -- 25135
AACAACTAACTTAGACAAACACTCTGAGCTTAACCTTCTCGCCGTCCTTGCACTTCTTAGTGGAC
AAAGTGTAAGTGGTGTTGGTGCGAGGAAGGGGGCACGCACGCCAAGTGTGCTGACCTCTCCAGAA
CAATCTGTTCTCGTAGATTCTCCAGCCATTCTTGGTCAGGTTGGTCTGCTGGGCCTTCTGGGTGC
TGTTGGCCAACTCAACAGTGTGGTCGTCGAAGACAACACCGGTACCGTTGATGGCAGCCAACGAG
GAGTTCTTGAGGTTGAAGTAAACGTCCTTACCGTAACGGGCAGCAACCAACTGGCCAGTGCCGTT
ACCTTGCTTCAAAGAAACCAACTGGTCGTCATCGTCGTTGAAGTCAACAATGATGCGGAAGCTCT
TGAGGTTCTTCAAGACGTCGTCATCATCGTCATCGCTGTCATCGTCATCATCATCGTCATCATCG
TCATCGTTGTCGTCGCCATCGTTGTCATCGTCGTTGTCATCACCA
Right flanking sequence: Indices 25179 -- 25678
CACCATCGTTGTCATTGTCGTTGTCATTGTTCAGGTTCTGGTTGTTAGCACCACCAGAGTTACCC
TGGTTGCTGATCTGGTGGTCATCGTCGTCGTCGTCATCTCTAGTGACAAGGTTGTTCAAAACCTC
AGGCTTGAGGTAAGCCAAGGGAGAAGCGGCAACAGCGGTAGCAAGAGCAAGCAAAGTGAACTTCA
TGATTAATTGATTGACCAAGATTTACGGCGAACTGCGTTCTTTTATAATTCGAATATTCCATTTG
GCCCGGCAGTACCCTTTGGTCATAGCACAGCGGGATTTTGGTTGCAAAACATGCATGCAGCCGAG
TTGCCGCCAAGAAGGCTCATAACCCTGGGACTAGGGCAAAGTATCGACAAATGCTGCGACAGCAC
CGAGTAACCACCCAAAAGTGGTCGGGTCCAACTGAAATAAGATTCGAATGGATCTCGGTTGTTAA
ATTTCCTTGTTTCGCGGCCTAAAAGTCTCATGTTTGCAAATATCC
Found at i:25199 original size:12 final size:12
Alignment explanation
Indices: 25184--25208 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
25174 GTCGTCACCA
25184 TCGTTGTCATTG
1 TCGTTGTCATTG
25196 TCGTTGTCATTG
1 TCGTTGTCATTG
25208 T
1 T
25209 TCAGGTTCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.24, T:0.52
Consensus pattern (12 bp):
TCGTTGTCATTG
Left flanking sequence: Indices 24684 -- 25183
TGCACTTCTTAGTGGACAAAGTGTAAGTGGTGTTGGTGCGAGGAAGGGGGCACGCACGCCAAGTG
TGCTGACCTCTCCAGAACAATCTGTTCTCGTAGATTCTCCAGCCATTCTTGGTCAGGTTGGTCTG
CTGGGCCTTCTGGGTGCTGTTGGCCAACTCAACAGTGTGGTCGTCGAAGACAACACCGGTACCGT
TGATGGCAGCCAACGAGGAGTTCTTGAGGTTGAAGTAAACGTCCTTACCGTAACGGGCAGCAACC
AACTGGCCAGTGCCGTTACCTTGCTTCAAAGAAACCAACTGGTCGTCATCGTCGTTGAAGTCAAC
AATGATGCGGAAGCTCTTGAGGTTCTTCAAGACGTCGTCATCATCGTCATCGCTGTCATCGTCAT
CATCATCGTCATCATCGTCATCGTTGTCGTCGCCATCGTTGTCATCGTCGTTGTCATCACCATCG
TTGTCGTTGTCGTTGTCGTCACCGTCGTTGTCGTTGTCGTCACCA
Right flanking sequence: Indices 25209 -- 25708
TCAGGTTCTGGTTGTTAGCACCACCAGAGTTACCCTGGTTGCTGATCTGGTGGTCATCGTCGTCG
TCGTCATCTCTAGTGACAAGGTTGTTCAAAACCTCAGGCTTGAGGTAAGCCAAGGGAGAAGCGGC
AACAGCGGTAGCAAGAGCAAGCAAAGTGAACTTCATGATTAATTGATTGACCAAGATTTACGGCG
AACTGCGTTCTTTTATAATTCGAATATTCCATTTGGCCCGGCAGTACCCTTTGGTCATAGCACAG
CGGGATTTTGGTTGCAAAACATGCATGCAGCCGAGTTGCCGCCAAGAAGGCTCATAACCCTGGGA
CTAGGGCAAAGTATCGACAAATGCTGCGACAGCACCGAGTAACCACCCAAAAGTGGTCGGGTCCA
ACTGAAATAAGATTCGAATGGATCTCGGTTGTTAAATTTCCTTGTTTCGCGGCCTAAAAGTCTCA
TGTTTGCAAATATCCGTGTGACCTCGCGAGCAAATCCATGCATCA
Found at i:65065 original size:13 final size:13
Alignment explanation
Indices: 65032--65087 Score: 76
Period size: 13 Copynumber: 4.2 Consensus size: 13
65022 CCCACCACCC
65032 ACCGTACCACTGT
1 ACCGTACCACTGT
65045 ACCCGTACCACTGT
1 A-CCGTACCACTGT
**
65059 ACCGTACTGCTGT
1 ACCGTACCACTGT
*
65072 ACCGTACCGCTGT
1 ACCGTACCACTGT
65085 ACC
1 ACC
65088 CCACACCACA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
13 26 0.67
14 13 0.33
ACGTcount: A:0.20, C:0.39, G:0.18, T:0.23
Consensus pattern (13 bp):
ACCGTACCACTGT
Left flanking sequence: Indices 64532 -- 65031
CGCAGCGACACGACGAGTCATCGAGCTGCATGAGGCGGCCGTCAACAATGCACCATTTGGTGCGT
ATGCTCGCACTTAAAACAATATCGACGCAAGTCAATTTCAGAGCAAAACACCAGTAGGCCCGGTG
CGGTCCCGGGAAAGACCCACGAGCGCGTTCAACACCGGTGGCCCGTAGTCCCATCGCCCGCGTCT
CCCCTTTTGTCGTACATATGCAGCAACCGGTGTCTGGCGGGGTTCACCCGCCTTTTTTCGGCCCC
CACGATTTGACGCTGGTTGACCTTCTACTCCCGGTTTAAGTTTTTTTTTTTTCCATACCTATCAC
CAACTTCTATAGCATTAGCACCGGGACGTCAATTGGTTTGCACCCTGTGGTATCCATACGCTGCT
TGAACCGTTCCCGCTAGTCTCCTGGTTACCCGTGCCTGCTCCGCCCGCCCTTGCTGACGCTCGTA
TCCGCTTGATTGAGGCCACCACCAAGGTCCAGCAGCCCACCACCC
Right flanking sequence: Indices 65088 -- 65587
CCACACCACAAAACCACAACCCGTTGACCAGCCTCCGCTCGGAACCTCACCCCACCCACCCCACG
CACCCCACAGCAATGTCCACTGTTCCCCGACGGTACCAAAAGACAGGGGTCGGCAACCAGGGCGG
CAACGCCAGCCCAATGCTCAACTCGTTTAGCAACGGGTCCGCCTACTCGTCGCGCCAGCCGCTGG
CGCTGGGACCCCCGCGCCACGGACGCATGAGCTCGGTGTCGCTGCTGGCAATGAGCCCGGCCATC
GGCATCTCGCGCTCGCTGTCGGTGCACACCGACATCCTGTCCACCTACAGCACCAACCGTGCGTC
GCTTGGGTTCATGCGGTCGTCGTACGTGCTCAAGCGCCAGCTCGAAAAGAACGGCGAGACGGTGA
GGCTCGGCGACAACTTGGACGCGTCGCAGATGCCGCAGGAGGCCGCCCGCCCCCGGATCATCGAG
GTGCCCAGCCCCAACAAGCCCGCGGTGATGCCCGTGGTCGACCAG
Found at i:66962 original size:20 final size:20
Alignment explanation
Indices: 66937--66977 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
66927 GTCGGTTGTA
66937 GCTGTAGTGTTCGCTAGTAT
1 GCTGTAGTGTTCGCTAGTAT
* *
66957 GCTGTAGTGTTTGTTAGTAT
1 GCTGTAGTGTTCGCTAGTAT
66977 G
1 G
66978 TTCTCAAGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.15, C:0.10, G:0.32, T:0.44
Consensus pattern (20 bp):
GCTGTAGTGTTCGCTAGTAT
Left flanking sequence: Indices 66437 -- 66936
CGCGTCAAGTCGCTCTTTGGCCTGAACAGCCGCGAGCGCCCGCCGTCGCTGCAGACTCTGATGCG
GTCGCTGATCAGCCGGCCGCGCCCCGACTCCACCTCCAACTTGGACCTGATCACCATGCTGCTGG
TGGACAACCTGCTGGCGTTTGCGGGGAGCCAGCACCTGGGCCAGGCGCTGACGCTCAACCTGCGG
CGGCCGCTGACCATGGACATGGTGCTGGAGACGCTGCGGCTGCTGCTGCGGCGGCTGCTTCTCAA
CAAGATCCGCAACCGCTCGCTGGTGGACACCACGTTGCAGCCGCTGTCGGTGGCGCCTGGGGGAT
CGAAGATCAAGGGCAACAAGTACAAGGTGCACTCGGTGCCCTACAACATCTTTGCCCGGGGGATT
CCCCGCAACAAGTTGTCCAACTACCCGGAGTAACTATGTAATATTTAATAACACAATAATAGGAG
CGTGGGTGGAGTGGGTCGCCAGTGGTGGGTCGGTGGTCGGTTGTA
Right flanking sequence: Indices 66978 -- 67477
TTCTCAAGGTCACGTCGGTGTTACCGTGGTGGACGTAACGCGTGGCATTGATGGATAAAGTATCG
TATCACCGGTTGCCTGGTGGATGGGTGAGGATCGTCTAATTGCGGTAAGACCGTACATTGTCGGT
GGAAACCGCCACAGTGCGTGGCACCACTAGTATGTCCGCTAACTCCTAGCACTACCATCGGCTAT
GTCTTCATTGCCTGGCCATTGCCTAGCCTACGATGTACGCTATCAATTCTTCTCCACTTCCCCTC
CACTTCAGCCACACTGATCGTTGCCAACTGCTGGGGCTGTTACCACGTAGATGCCACCTGCATGT
GGCTTTGTGCCCACGAGCCAAGACTCAAAGCCACGGAGCCAGGCAGAAGTGGCCTCCTTCTTCTC
TACACAGACACCCCACTCATCTACACTCCCAACAGCCCGACACTCTCTCCTCAGTCCGCACCCGC
CAATCCCACACCATCTTGTCCCCACCGTTCCCCGGCCTTCCCCAC
Found at i:81799 original size:168 final size:168
Alignment explanation
Indices: 81588--82280 Score: 1115
Period size: 168 Copynumber: 4.1 Consensus size: 168
81578 AGGGAATTGT
* * * * * * *
81588 CGTCTCGATAGGCGGCACGGGGACCGTGGT-GGGAGTCACAGGACAAGTGGTTGTGTATACTGTG
1 CGTCTCGATCGGGGGCACAGGGACCGTGGTAGGG-GTCACAGGACAAGTCGTGGTGTACACCGTG
* ** * * * ** *
81652 GTCAAA-ATCGTGGTGAG-CTCCTCACATTTC-GGACACGATTTCGTGACAGTGGTGTGGTGAGT
65 GT-AAACACCGACGT-AGTCTCCTCGCA-CTCAGGACAAGGCTTGGTGACAGTGGTGTGGTGAGT
81714 GGTCACAACGGTGGTAGTCGACTCCGAAGGAGGAGGAAGCGA
127 GGTCACAACGGTGGTAGTCGACTCCGAAGGAGGAGGAAGCGA
* *
81756 CGTCTCGATCGGGGGCACAGGGACCGTGGTAGGGGTCACAGGACAAGTGGTTGTGTACACCGTGG
1 CGTCTCGATCGGGGGCACAGGGACCGTGGTAGGGGTCACAGGACAAGTCGTGGTGTACACCGTGG
81821 TAAACACCGACGTAGTCTCCTCGCACTCAGGACAAGGCTTGGTGACAGTGGTGTGGTGAGTGGTC
66 TAAACACCGACGTAGTCTCCTCGCACTCAGGACAAGGCTTGGTGACAGTGGTGTGGTGAGTGGTC
81886 ACAACGGTGGTAGTCGACTCCGAAGGAGGAGGAAGCGA
131 ACAACGGTGGTAGTCGACTCCGAAGGAGGAGGAAGCGA
*
81924 CGTCTCGATCGGGGGCACAGGGACCGTGGTAGGGGTCACAGGGCAAGTCGTGGTGTACACCGTGG
1 CGTCTCGATCGGGGGCACAGGGACCGTGGTAGGGGTCACAGGACAAGTCGTGGTGTACACCGTGG
81989 TAAACACCGACGTAGTCTCCTCGCACTCAGGACAAGGCTTGGTGACAGTGGTGTGGTGAGTGGTC
66 TAAACACCGACGTAGTCTCCTCGCACTCAGGACAAGGCTTGGTGACAGTGGTGTGGTGAGTGGTC
82054 ACAACGGTGGTAGTCGACTCCGAAGGAGGAGGAAGCGA
131 ACAACGGTGGTAGTCGACTCCGAAGGAGGAGGAAGCGA
82092 CGTCTCGATCGGGGGCACAGGGACCGTGGTAGGGGTCACAGGACAAGTCGTGGTGTACACCGTGG
1 CGTCTCGATCGGGGGCACAGGGACCGTGGTAGGGGTCACAGGACAAGTCGTGGTGTACACCGTGG
* *
82157 TAAACACCGATGTAGTCTCCTCGCACTCAGGACAAGGCTTGGTGACAGTGGTGTGGTGAGTAGTC
66 TAAACACCGACGTAGTCTCCTCGCACTCAGGACAAGGCTTGGTGACAGTGGTGTGGTGAGTGGTC
82222 ACAACGGTGGTAGTCGACTCCGAAGGAGGAGGAAGCGA
131 ACAACGGTGGTAGTCGACTCCGAAGGAGGAGGAAGCGA
* *
82260 CGTCTCGATTGGAGGCACAGG
1 CGTCTCGATCGGGGGCACAGG
82281 AACGGTCGAA
Statistics
Matches: 499, Mismatches: 22, Indels: 8
0.94 0.04 0.02
Matches are distributed among these distances:
167 7 0.01
168 489 0.98
169 3 0.01
ACGTcount: A:0.22, C:0.21, G:0.37, T:0.19
Consensus pattern (168 bp):
CGTCTCGATCGGGGGCACAGGGACCGTGGTAGGGGTCACAGGACAAGTCGTGGTGTACACCGTGG
TAAACACCGACGTAGTCTCCTCGCACTCAGGACAAGGCTTGGTGACAGTGGTGTGGTGAGTGGTC
ACAACGGTGGTAGTCGACTCCGAAGGAGGAGGAAGCGA
Left flanking sequence: Indices 81088 -- 81587
ACAGGAACGGGGGCTAATTGAGACTCAGCATCCACGGTGAGTGCAACCTGAGCAATGACTTCCTT
TTCTGAAACCACTTGGGGCGGAGTCTCGGGAGCAGGCGTCACCACTGGTTGAGGGGTGGGTGTGA
ATTTGTGGACCTCACAATCGGAACATGAGAACGTGATAGTCGTGGTGACATCAGGAAGCTCCACA
GGCGGCGTGTAAGTGATGGGGGTAGACTTGGTCAAAGTCACCACCGAAGTCTCAATTGAACACGA
GTGTGAGTCCTCGCAGGTGTGAATAGTGGAAGTCAGCTCGTGCTCCTCAGTGATTATTGTTGTTT
GAGGCGGCGGAACAGTCACCACAGTTGATTTCGTGGTCAAGTAAGTGGTCGAGCTTACCAGGCCA
TTGGTCTGCGAAAGTAAAGTGGTGGTGCAATTCTCAGTGATCGTCACTGTCGTCAAAATAGGCGG
CGGCACGAGCTCTTCAGGTACCGAAACAGGAAGCGAGGGAATTGT
Right flanking sequence: Indices 82281 -- 82780
AACGGTCGAAGGCGTAATGGGACAAGTTGTCGTGTACTCAGTGGTGACAGTAGTCTCCTCACACT
CATGACAAGGCTTCGTGACAATCGTAGTCGTGGTAGTGATCACGGTCGACTCCGAAGGAGGAGGA
AGCGACGTCTCGATTGGAGGCACAGGAACGGTCGAAGGCGTAATGGGACAAGTTGTCGTGTACTC
AGTGGTGACAGTAGTCTCCTCACACTCATGACAAGGCTTCGTGACAATCGTAGTCGTGGTAGTGA
TCACGGTGGACTCCGAAGGAGGAGGAAGCGACGTCTCGATTGGAGGCCCAGGAACGGTCGAAGGC
GTAATGGGACAAGTTGTCGTGTACTCAGTGGTGACAGTAGTCTCCTCGCACTGAGGACAAGGCTT
TGTGACGATGGTAGTTGTGGTGGTGATCACGGTGGAGTCCAGAGGGATTGGCACACTCGAGTCGA
CACTTTCGGAAGACGTGAAAGCCGAAGGAACCGACTCAGACGTCC
Found at i:82306 original size:168 final size:162
Alignment explanation
Indices: 81694--82676 Score: 1066
Period size: 168 Copynumber: 6.0 Consensus size: 162
81684 ACACGATTTC
*
81694 GTGACAGTGGTGTGGTGAGTGGTCACAACGGTGGTAGTCGACTCCGAAGGAGGAGGAAGCGACGT
1 GTGACAGTGGTGTGGTGAGTAGTCACAACGGTGGTAGTCGACTCCGAAGGAGGAGGAAGCGACGT
* * * * * * ** * * *
81759 CTCGATCGGGGGCACAGGGACCGTGGTAGGGGTCACAGGACAAGTGGTTGTGTACACCGTGGTAA
66 CTCGATCGGAGGCACAGGAACCGTCGAAGGCGTAATGGGACAAGTTGTCGTGTACACAGTGGT--
81824 ACACCGACGTAGTCTCCTCGCACTCAGGACAAGGCTTG
129 -CA-C-A-GTAGTCTCCTCGCACTCAGGACAAGGCTTG
*
81862 GTGACAGTGGTGTGGTGAGTGGTCACAACGGTGGTAGTCGACTCCGAAGGAGGAGGAAGCGACGT
1 GTGACAGTGGTGTGGTGAGTAGTCACAACGGTGGTAGTCGACTCCGAAGGAGGAGGAAGCGACGT
* * * * * * * *
81927 CTCGATCGGGGGCACAGGGACCGTGGTAGGGGTCACA-GGG-CAAGTCGTGGTGTACACCGTGGT
66 CTCGATCGGAGGCACAGGAACCGTCGAAGGCGT-A-ATGGGACAAGTTGTCGTGTACACAGTGGT
81990 AAACACCGACGTAGTCTCCTCGCACTCAGGACAAGGCTTG
129 ---CA-C-A-GTAGTCTCCTCGCACTCAGGACAAGGCTTG
*
82030 GTGACAGTGGTGTGGTGAGTGGTCACAACGGTGGTAGTCGACTCCGAAGGAGGAGGAAGCGACGT
1 GTGACAGTGGTGTGGTGAGTAGTCACAACGGTGGTAGTCGACTCCGAAGGAGGAGGAAGCGACGT
* * * * * * ** * * *
82095 CTCGATCGGGGGCACAGGGACCGTGGTAGGGGTCACAGGACAAGTCGTGGTGTACACCGTGGTAA
66 CTCGATCGGAGGCACAGGAACCGTCGAAGGCGTAATGGGACAAGTTGTCGTGTACACAGTGGT--
82160 ACACCGATGTAGTCTCCTCGCACTCAGGACAAGGCTTG
129 -CA-C-A-GTAGTCTCCTCGCACTCAGGACAAGGCTTG
82198 GTGACAGTGGTGTGGTGAGTAGTCACAACGGTGGTAGTCGACTCCGAAGGAGGAGGAAGCGACGT
1 GTGACAGTGGTGTGGTGAGTAGTCACAACGGTGGTAGTCGACTCCGAAGGAGGAGGAAGCGACGT
* * * *
82263 CTCGATTGGAGGCACAGGAACGGTCGAAGGCGTAATGGGACAAGTTGTCGTGTACTCAGTGGTGA
66 CTCGATCGGAGGCACAGGAACCGTCGAAGGCGTAATGGGACAAGTTGTCGTGTACACAGTGGTCA
* * *
82328 CAGTAGTCTCCTCACACTCATGACAAGGCTTC
131 CAGTAGTCTCCTCGCACTCAGGACAAGGCTTG
* * * *
82360 GTGACAATCGTAGTCGTG-GTAGTGATC-AC----G--GTCGACTCCGAAGGAGGAGGAAGCGAC
1 GTGACAGTGGT-GTGGTGAGTAGTCA-CAACGGTGGTAGTCGACTCCGAAGGAGGAGGAAGCGAC
* * *
82417 GTCTCGATTGGAGGCACAGGAACGGTCGAAGGCGTAATGGGACAAGTTGTCGTGTACTCAGTGGT
64 GTCTCGATCGGAGGCACAGGAACCGTCGAAGGCGTAATGGGACAAGTTGTCGTGTACACAGTGGT
* * * *
82482 GACAGTAGTCTCCTCACACTCATGACAAGGCTTC
129 CACAGTAGTCTCCTCGCACTCAGGACAAGGCTTG
* * * *
82516 GTGACAATCGTAGTCGTG-GTAGTGATC-AC---GGT-G--GACTCCGAAGGAGGAGGAAGCGAC
1 GTGACAGTGGT-GTGGTGAGTAGTCA-CAACGGTGGTAGTCGACTCCGAAGGAGGAGGAAGCGAC
* * * *
82573 GTCTCGATTGGAGGCCCAGGAACGGTCGAAGGCGTAATGGGACAAGTTGTCGTGTACTCAGTGGT
64 GTCTCGATCGGAGGCACAGGAACCGTCGAAGGCGTAATGGGACAAGTTGTCGTGTACACAGTGGT
* * *
82638 GACAGTAGTCTCCTCGCACTGAGGACAAGGCTTT
129 CACAGTAGTCTCCTCGCACTCAGGACAAGGCTTG
82672 GTGAC
1 GTGAC
82677 GATGGTAGTT
Statistics
Matches: 772, Mismatches: 35, Indels: 28
0.92 0.04 0.03
Matches are distributed among these distances:
156 278 0.36
157 1 0.00
158 2 0.00
162 44 0.06
163 7 0.01
164 1 0.00
165 1 0.00
166 1 0.00
167 2 0.00
168 432 0.56
169 2 0.00
170 1 0.00
ACGTcount: A:0.23, C:0.21, G:0.36, T:0.20
Consensus pattern (162 bp):
GTGACAGTGGTGTGGTGAGTAGTCACAACGGTGGTAGTCGACTCCGAAGGAGGAGGAAGCGACGT
CTCGATCGGAGGCACAGGAACCGTCGAAGGCGTAATGGGACAAGTTGTCGTGTACACAGTGGTCA
CAGTAGTCTCCTCGCACTCAGGACAAGGCTTG
Left flanking sequence: Indices 81194 -- 81693
CCACTGGTTGAGGGGTGGGTGTGAATTTGTGGACCTCACAATCGGAACATGAGAACGTGATAGTC
GTGGTGACATCAGGAAGCTCCACAGGCGGCGTGTAAGTGATGGGGGTAGACTTGGTCAAAGTCAC
CACCGAAGTCTCAATTGAACACGAGTGTGAGTCCTCGCAGGTGTGAATAGTGGAAGTCAGCTCGT
GCTCCTCAGTGATTATTGTTGTTTGAGGCGGCGGAACAGTCACCACAGTTGATTTCGTGGTCAAG
TAAGTGGTCGAGCTTACCAGGCCATTGGTCTGCGAAAGTAAAGTGGTGGTGCAATTCTCAGTGAT
CGTCACTGTCGTCAAAATAGGCGGCGGCACGAGCTCTTCAGGTACCGAAACAGGAAGCGAGGGAA
TTGTCGTCTCGATAGGCGGCACGGGGACCGTGGTGGGAGTCACAGGACAAGTGGTTGTGTATACT
GTGGTCAAAATCGTGGTGAGCTCCTCACATTTCGGACACGATTTC
Right flanking sequence: Indices 82677 -- 83176
GATGGTAGTTGTGGTGGTGATCACGGTGGAGTCCAGAGGGATTGGCACACTCGAGTCGACACTTT
CGGAAGACGTGAAAGCCGAAGGAACCGACTCAGACGTCCTCACAGAAGGAGAAGACTCAACCATG
GATTCAGAAGTAGCCACCAGAACCGACTCCAGAGGCGTCGAGGACACTTCGATCGGAGGTACCGG
GAGCGACAAAGTAGTGGTAGGCGTCTCCTCGCTCACGGGGGGCGGTGTCTCAATAACGGTTGTAG
TTATGGGATGACAAGTGTCGCACGTCTTGGTAATCCACACGGTATATTCACATTCGGAGGGGATA
TGAGTCGTGGAAGTGACGGTTTCCGGCTCACACACTTCGCAAGTCTTGGTGACAATGGTAGTCTT
CGTGGGAATTGAAACGGTGGTAGTTCCAGTCTCGATAGGCGTGCAAGACTCGTTAGACAGCCATT
GACTCGATGTGGACTCCGAGGAACCAATACTGGACGTATCAGCCG
Found at i:82704 original size:156 final size:156
Alignment explanation
Indices: 82237--82706 Score: 850
Period size: 156 Copynumber: 3.0 Consensus size: 156
82227 GGTGGTAGTC
82237 GACTCCGAAGGAGGAGGAAGCGACGTCTCGATTGGAGGCACAGGAACGGTCGAAGGCGTAATGGG
1 GACTCCGAAGGAGGAGGAAGCGACGTCTCGATTGGAGGCACAGGAACGGTCGAAGGCGTAATGGG
82302 ACAAGTTGTCGTGTACTCAGTGGTGACAGTAGTCTCCTCACACTCATGACAAGGCTTCGTGACAA
66 ACAAGTTGTCGTGTACTCAGTGGTGACAGTAGTCTCCTCACACTCATGACAAGGCTTCGTGACAA
*
82367 TCGTAGTCGTGGTAGTGATCACGGTC
131 TCGTAGTCGTGGTAGTGATCACGGTG
82393 GACTCCGAAGGAGGAGGAAGCGACGTCTCGATTGGAGGCACAGGAACGGTCGAAGGCGTAATGGG
1 GACTCCGAAGGAGGAGGAAGCGACGTCTCGATTGGAGGCACAGGAACGGTCGAAGGCGTAATGGG
82458 ACAAGTTGTCGTGTACTCAGTGGTGACAGTAGTCTCCTCACACTCATGACAAGGCTTCGTGACAA
66 ACAAGTTGTCGTGTACTCAGTGGTGACAGTAGTCTCCTCACACTCATGACAAGGCTTCGTGACAA
82523 TCGTAGTCGTGGTAGTGATCACGGTG
131 TCGTAGTCGTGGTAGTGATCACGGTG
*
82549 GACTCCGAAGGAGGAGGAAGCGACGTCTCGATTGGAGGCCCAGGAACGGTCGAAGGCGTAATGGG
1 GACTCCGAAGGAGGAGGAAGCGACGTCTCGATTGGAGGCACAGGAACGGTCGAAGGCGTAATGGG
* * * * *
82614 ACAAGTTGTCGTGTACTCAGTGGTGACAGTAGTCTCCTCGCACTGAGGACAAGGCTTTGTGACGA
66 ACAAGTTGTCGTGTACTCAGTGGTGACAGTAGTCTCCTCACACTCATGACAAGGCTTCGTGACAA
* * *
82679 TGGTAGTTGTGGTGGTGATCACGGTG
131 TCGTAGTCGTGGTAGTGATCACGGTG
82705 GA
1 GA
82707 GTCCAGAGGG
Statistics
Matches: 304, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
156 304 1.00
ACGTcount: A:0.24, C:0.20, G:0.34, T:0.21
Consensus pattern (156 bp):
GACTCCGAAGGAGGAGGAAGCGACGTCTCGATTGGAGGCACAGGAACGGTCGAAGGCGTAATGGG
ACAAGTTGTCGTGTACTCAGTGGTGACAGTAGTCTCCTCACACTCATGACAAGGCTTCGTGACAA
TCGTAGTCGTGGTAGTGATCACGGTG
Left flanking sequence: Indices 81737 -- 82236
CCGAAGGAGGAGGAAGCGACGTCTCGATCGGGGGCACAGGGACCGTGGTAGGGGTCACAGGACAA
GTGGTTGTGTACACCGTGGTAAACACCGACGTAGTCTCCTCGCACTCAGGACAAGGCTTGGTGAC
AGTGGTGTGGTGAGTGGTCACAACGGTGGTAGTCGACTCCGAAGGAGGAGGAAGCGACGTCTCGA
TCGGGGGCACAGGGACCGTGGTAGGGGTCACAGGGCAAGTCGTGGTGTACACCGTGGTAAACACC
GACGTAGTCTCCTCGCACTCAGGACAAGGCTTGGTGACAGTGGTGTGGTGAGTGGTCACAACGGT
GGTAGTCGACTCCGAAGGAGGAGGAAGCGACGTCTCGATCGGGGGCACAGGGACCGTGGTAGGGG
TCACAGGACAAGTCGTGGTGTACACCGTGGTAAACACCGATGTAGTCTCCTCGCACTCAGGACAA
GGCTTGGTGACAGTGGTGTGGTGAGTAGTCACAACGGTGGTAGTC
Right flanking sequence: Indices 82707 -- 83206
GTCCAGAGGGATTGGCACACTCGAGTCGACACTTTCGGAAGACGTGAAAGCCGAAGGAACCGACT
CAGACGTCCTCACAGAAGGAGAAGACTCAACCATGGATTCAGAAGTAGCCACCAGAACCGACTCC
AGAGGCGTCGAGGACACTTCGATCGGAGGTACCGGGAGCGACAAAGTAGTGGTAGGCGTCTCCTC
GCTCACGGGGGGCGGTGTCTCAATAACGGTTGTAGTTATGGGATGACAAGTGTCGCACGTCTTGG
TAATCCACACGGTATATTCACATTCGGAGGGGATATGAGTCGTGGAAGTGACGGTTTCCGGCTCA
CACACTTCGCAAGTCTTGGTGACAATGGTAGTCTTCGTGGGAATTGAAACGGTGGTAGTTCCAGT
CTCGATAGGCGTGCAAGACTCGTTAGACAGCCATTGACTCGATGTGGACTCCGAGGAACCAATAC
TGGACGTATCAGCCGAGGATGAGTCGACCTGAGAGATTTCTGAAA
Found at i:99676 original size:24 final size:23
Alignment explanation
Indices: 99610--99677 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 23
99600 TCCATGTGGA
* *
99610 GGTTGTGGCATAGGATGACCGTGC
1 GGTTGTTGCAT-GGATGCCCGTGC
* *
99634 GTTTGTTGCAATGGTTGCCCGTGC
1 GGTTGTTGC-ATGGATGCCCGTGC
*
99658 GGTTGTTGCATCGGCTGCCC
1 GGTTGTTGCAT-GGATGCCC
99678 TGGCATGGGA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
23 2 0.06
24 32 0.89
25 2 0.06
ACGTcount: A:0.10, C:0.22, G:0.37, T:0.31
Consensus pattern (23 bp):
GGTTGTTGCATGGATGCCCGTGC
Left flanking sequence: Indices 99110 -- 99609
TCCGGGTCCTTCTTCAAATCCATAACCGCAGCGATGGGAATGCCAAAGTTGGACACCGGTCCCCA
GAAATGGGTGGTGCACATGTACTTCAACGTCTTCTTGGAGAACAAGTTGTCCAAAATCTTTTTAA
AGCCGCCCGAAGACATGTTTGTTGATCAGATATGGAGTGGGGGTGCTGCTAAAAGTGACTTTTCA
ATGTTTGATCGTTAGCGACCGGGCCGCTGGGTCACGTGATCTGCGAAACGCGCCTAACAATGTGG
GGAAAGCGGGGACTCCGGATACCAAGGGTAATTGGAGGTCGGGAACGTCTATTGTAATTATAACA
TACAGTCTATTGAGGTGGTGGGTTTGGAGGGCTCTGTTGTCCGGTGGGCGGTGGATAATGTTGGT
GTTGCTCCAACCGCTCATTCAACCGCACTTGACCGCCAGGAGGTTGGTCAGGTGGAAGTAGGCCA
GGACCCATGTGCATTGGGTGCTGTTGCATAGGATGTCCATGTGGA
Right flanking sequence: Indices 99678 -- 100177
TGGCATGGGAGGTTGACCCGGTTGCGGAGGGTGAATAGGAATTTGGTGGTGAGGGGGTATCGGTG
GTTGGCCTGCGTGGAATTCATGCTCGGGAGGAACACCACCAGAAGGCATACCGGGACCGTTCAGC
TGCTGACGGGGCAAATAGGCGTAGGGCTGATACTCGTGGTGAGATGGAAGAGGTGGAGGAGGATT
TTGAAAGTATTGGTCCGGAGTGAGATTCCACCCCAGAGGCTGCTGGGAGTATTGGCTTTCGTAAC
CCCCAGACAGGTAGTCTGGTGGAAGGGGCCCATCTGGCGGGAGAGACAGCGATTGCAATGACATA
ACGTCTTGACCATCATTGTACTGTTTGTCCGGTGCCAGATTGCCACTGGCATAAGGGTTGTCTGC
GCCCAGAACGCCACTCCCGTGGCCACTACCTGGAGTTGCCTCCTCTGAAGGCGAACTGAGGTAGT
AGGGTATATTCTCAGGACTCGTGAGCCAGAAGGGGTCGCGGAAAC
Found at i:150330 original size:9 final size:9
Alignment explanation
Indices: 150316--150342 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
150306 GATGGGCGGT
150316 GGCATGGGC
1 GGCATGGGC
150325 GGCATGGGC
1 GGCATGGGC
150334 GGCATGGGC
1 GGCATGGGC
150343 AACTTGTTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.11, C:0.22, G:0.56, T:0.11
Consensus pattern (9 bp):
GGCATGGGC
Left flanking sequence: Indices 149816 -- 150315
AAGTGCTCAAGGATGACCAGACGGTCGAGCTGTACAAGGTGAGCTCGGGCCACACCATCCACTTG
GTCAAGAGCGCCGCCAAGACCTCGTCCGCCACCCCCGCCGCCTCCTCCACTTCCCCGGCGCCCGC
CGCCCCCACCAACATTGCTGCCGGATCCGGCTCGTATAACCCGTTGGCGGACTTGACGGGTGCTC
GCTACGCGGGCTTTGGCCCCACGTTGCCCTCGGCACTGATGTTTGGGCCTGACGGCGGCATGAAC
CTGGGCATGCCCGATCCCGACCAGTTGACGCAGATGATGCTGCTGCCGATGTTCCAGGAACAGAT
GAACGCCATGCTCAACGACCCGCAGATGATGGAGTTTATGTTCCAGCAGAACCCACAGTTGCGGG
CCATGGCTCCGCAAATGCGCTCAATGATGCAGCTGCCGTTCTTCCGCCAAATGATGCTGAACCCC
GAGATGATGCGGTCGATGATGGACATGAGCCGCGAGATGGGCGGT
Right flanking sequence: Indices 150343 -- 150842
AACTTGTTTGGTGGTGCTGGTGCCGGTGCGGGCGCTGCCTCCGGGTTCCCTGCTCCCGGGAGCGT
GGCGGAATCGGGCGAGGCCGGTGGTGCGGGCGCTCCTACAAACTCTACTTCTGACACATCCAGCA
ACGCTGGGGCCACTGGTGCTGGTGCTGGTGGCGCTGGGGCTGCTGGTGCTGCCGCCAACCCGTTT
GCCCAGTTGTTTGGCGGTGGCATGGGCGGCCTCGGCGGCTTGGGAGGCTTTGGCGGTGCTCCCGC
CGACAGCCGTCCTCCGGAGGAAAAGTGGGCCACCCAGTTGCAGACGTTGAACGACATGGGGTTCG
TAGACCCGGCCATCAACGTGGTGGCGCTCACCGTCGCCAACGGCAACGTCCAGGGGGCCATCGAC
TACTTGTTGCGTGGAGGCTAACTGTATATCGCGTGTTGTATAATAACAACAAACAGCCATTCCTC
ACCCATCCCACGGATCCACCCGGGGCACTAATCAGTTTCATGTCG
Found at i:150523 original size:15 final size:15
Alignment explanation
Indices: 150475--150523 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
150465 ATCCAGCAAC
**
150475 GCTGGGGCCACTGGT
1 GCTGGGGCTGCTGGT
* * *
150490 GCTGGTGCTGGTGGC
1 GCTGGGGCTGCTGGT
150505 GCTGGGGCTGCTGGT
1 GCTGGGGCTGCTGGT
150520 GCTG
1 GCTG
150524 CCGCCAACCC
Statistics
Matches: 26, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.02, C:0.22, G:0.51, T:0.24
Consensus pattern (15 bp):
GCTGGGGCTGCTGGT
Left flanking sequence: Indices 149975 -- 150474
GCTCGTATAACCCGTTGGCGGACTTGACGGGTGCTCGCTACGCGGGCTTTGGCCCCACGTTGCCC
TCGGCACTGATGTTTGGGCCTGACGGCGGCATGAACCTGGGCATGCCCGATCCCGACCAGTTGAC
GCAGATGATGCTGCTGCCGATGTTCCAGGAACAGATGAACGCCATGCTCAACGACCCGCAGATGA
TGGAGTTTATGTTCCAGCAGAACCCACAGTTGCGGGCCATGGCTCCGCAAATGCGCTCAATGATG
CAGCTGCCGTTCTTCCGCCAAATGATGCTGAACCCCGAGATGATGCGGTCGATGATGGACATGAG
CCGCGAGATGGGCGGTGGCATGGGCGGCATGGGCGGCATGGGCAACTTGTTTGGTGGTGCTGGTG
CCGGTGCGGGCGCTGCCTCCGGGTTCCCTGCTCCCGGGAGCGTGGCGGAATCGGGCGAGGCCGGT
GGTGCGGGCGCTCCTACAAACTCTACTTCTGACACATCCAGCAAC
Right flanking sequence: Indices 150524 -- 151023
CCGCCAACCCGTTTGCCCAGTTGTTTGGCGGTGGCATGGGCGGCCTCGGCGGCTTGGGAGGCTTT
GGCGGTGCTCCCGCCGACAGCCGTCCTCCGGAGGAAAAGTGGGCCACCCAGTTGCAGACGTTGAA
CGACATGGGGTTCGTAGACCCGGCCATCAACGTGGTGGCGCTCACCGTCGCCAACGGCAACGTCC
AGGGGGCCATCGACTACTTGTTGCGTGGAGGCTAACTGTATATCGCGTGTTGTATAATAACAACA
AACAGCCATTCCTCACCCATCCCACGGATCCACCCGGGGCACTAATCAGTTTCATGTCGTGTAAT
TAACTTATAAAGACTTATACAATTGCGCAAAACGATGCAAATGGAGAAGGTATGCAAGAAGAATC
GAGCCATGACCCGCACTTATAGTATCAAGACGGGTGCATCGGCCGAGCCACATGAGTTTCAAACC
ATGGGATAAATGTCAATAAAATCGTGAGAGGCGTTACTTTTTCAC
Found at i:167792 original size:2 final size:2
Alignment explanation
Indices: 167785--167825 Score: 50
Period size: 2 Copynumber: 21.5 Consensus size: 2
167775 CACAGGGAAA
* *
167785 AG AG AG AG AG AG AG AG GG AG AG AC AG A- AG AG AG A- AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
167825 A
1 A
167826 CGGAAAGGCG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
1 2 0.06
2 31 0.94
ACGTcount: A:0.51, C:0.02, G:0.46, T:0.00
Consensus pattern (2 bp):
AG
Left flanking sequence: Indices 167285 -- 167784
TGGAGCTTGACGAGCTCGGTCAACGCGGCCACCACCGCGGAGTTGGGCTCGTCGTCGATGACAAT
GGAGTCGGTGGTGACCGAGCGTGCCTGGGACTGGGTGGCGGGGATCGGGAACTGGAGGGTGCTCT
GCTTCTTCGCGGTCTGGAGGGGCGGTGGGGCTCGCTTGGCTGCGGGCGCTGGTAGCGGACGCTCG
GCCGGGCGCTTAGTCCCCGTGGCCTCCTCCTGGGTGAGATCGATGACCGGCAGCCTCGCGGTGCG
AGGGCTGTCTGCTGGTGGCGTAGACGCGACTAGCGAGCCTCGCGGAGCCAGCGCCAGCGCTGGGT
ACACCTTGGACACGAAGGCTATGTGGGCGGGGTCGGGGATCATGGGTTTTGTCTCATCCATCCAC
TTGCGATGCACCGCAAGGTTGTTGGCCATGGATGGATGACGCGTTAAGATGAGTCCTGCGAATAG
TAAACACAGATCGCGCGGTCTTCGGTGCGCGTTTGCACAGGGAAA
Right flanking sequence: Indices 167826 -- 168325
CGGAAAGGCGAAAACGAGACGAAAAAAGGACGAAATTGAAACGAACACGAAACGAAAGCGAGACT
AAACTGTTAATAACGATAAAGAAAACTAAAGGTTGAGATGTGTTATGAGATATAGGTTGTGATAA
CTAAGTGTGAGATCTATGTTGTGAGAGATTCGAAAGTATACTAGGGTGACAGAGCGATAAGGCAC
TGATTTACTGTGCTCTCTGCCTTCTCTTGGGTGTCATTTCACTTGGCACTGGCGCCGCCTTTTGA
CGTGCCAAGTGACAGATTTTCGCCCGCCCTTAGCCCCGAGAAACCGTCCACGCATCTCTTTTCGG
AAACCGTTATTCATCGTAGCCACATAACGTGGGGCCACTGTGTGAAGCGATCCTTTCGATCCTTG
ATCCAGCCTCTCCGTCACGGGGTACCGGTTACGAGCAACTACACGATCAGCAACCCGTCATCTCA
GCGACTGCACGAATCTTCGTTCGGAGTCACTTGCTTGTCTTGGCA
Found at i:170526 original size:13 final size:13
Alignment explanation
Indices: 170508--170532 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
170498 AACGAGGCGG
170508 TAGGTGGAAAACT
1 TAGGTGGAAAACT
170521 TAGGTGGAAAAC
1 TAGGTGGAAAAC
170533 GAGGTGGGTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.32, T:0.20
Consensus pattern (13 bp):
TAGGTGGAAAACT
Left flanking sequence: Indices 170008 -- 170507
ATCTACTATTTATTTATTGTCACCTAGACGGTGCTAATACCATGGATCATTCGGAGATAGCCAGG
CGCCCTACGGGGGTTTGCGATATAAGCCTCAAAGTGGGGTTCCCTAGTCTGGAATTAAGGCTGGG
CTGCAGGCGGGCGCCAAACGCAGACCCGTGACAGAAAATTCACGGGGATCTCTAGCGAATGCGGG
GGACCAGACCCCGGGTGGGGGCGCAACGGAATTACCCTTCCTTTACTCCGAAAAATTATGCCTAA
TCTGCGGAACTAATCTACGCGGAACTATAGGCAGGCTCAGACAATTCCACCGCTTGGAGTGGTGA
AGGCAGCGGTGTTTCCACAGCGCCCAGAAACAGATCTGAGTAGCGCGTCCCCCGCCGGGCGGGTT
CGGCCGTACTGCAACGGTTTATACCTCTCTTCATCACCTGTTATAGTTCAAAGAAAAAAAATTCT
TGCCGTCGCGCGGTTTATATAGTGGAGGTCCGGGTAACGAGGCGG
Right flanking sequence: Indices 170533 -- 171032
GAGGTGGGTGCAAACAGGTGGGCGGACGTAGGTGGCGAGCAGAAAAATCGTGACGATACGTACGA
ACTCTTACGGATGATCTTCGAGAGGTGTGGGGGACGTGGGAGCGGTAGGTCGGGTAGGTACTTCT
GTAGGTGTTTTGGCTTGGCAGTCACGTGACATGAGGTGGTGTTAGTGGGGCCGGGCAGTCTTGGA
ATTCAGCTATGATCAATGCTTCAAGAATCGGCATAGTCTGGCTGGTAGTGCTCGGTGATTTTTAT
CGAAACCAGATTTGATCAAATAAGCCAAGTGGTGTGGGGTAAAAAGTAGCACTGAATGGGATGAG
GTGTAAAACTAGCATTCGAAGTCTCTCTAGAGGTACGGTGCGAAGAACGAGGTACCAGCTGGGGG
GCCGCAGGCGGCGCCCCCCAGACCCCCCACCGCTTTCTTGGTGGGTTTTGTGGATCATGCTTGGT
TTGACTGGGCTCTAGGTCAGACCTTGAAGGGGTTGATGGGATGGC
Found at i:171289 original size:14 final size:14
Alignment explanation
Indices: 171252--171291 Score: 64
Period size: 13 Copynumber: 2.9 Consensus size: 14
171242 AGCCATTATG
171252 GAGAGCATTGTGAA
1 GAGAGCATTGTGAA
*
171266 GATA-CATTGTGAA
1 GAGAGCATTGTGAA
171279 GAGAGCATTGTGA
1 GAGAGCATTGTGA
171292 TCGTTTGACT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 12 0.52
14 11 0.48
ACGTcount: A:0.35, C:0.07, G:0.33, T:0.25
Consensus pattern (14 bp):
GAGAGCATTGTGAA
Left flanking sequence: Indices 170752 -- 171251
GAATCGGCATAGTCTGGCTGGTAGTGCTCGGTGATTTTTATCGAAACCAGATTTGATCAAATAAG
CCAAGTGGTGTGGGGTAAAAAGTAGCACTGAATGGGATGAGGTGTAAAACTAGCATTCGAAGTCT
CTCTAGAGGTACGGTGCGAAGAACGAGGTACCAGCTGGGGGGCCGCAGGCGGCGCCCCCCAGACC
CCCCACCGCTTTCTTGGTGGGTTTTGTGGATCATGCTTGGTTTGACTGGGCTCTAGGTCAGACCT
TGAAGGGGTTGATGGGATGGCCAGAATAGGATGGAGTATTGCGCAATTGCCAGTAGGAGGTTTAG
GTGGGTCTACACTTGGGTCAAGCTGCGGACTATGGTTGAGACCAAGCCAGAACTGGGGCAGAGCC
TGACCACAACTAACGGGTGGTGGGTGGAACGGGTTGTAGTGGTGCGTGGGACGGGTCTCTGGTTG
GGTGTCTGGTGCAATTGAATACTGGTATTACGATAAGCCATTATG
Right flanking sequence: Indices 171292 -- 171791
TCGTTTGACTTCTACTACGTATTGTCATTTCGTAAAATATATACAGAATGTGGAGAATACGCCAA
AATACGGTAACTACACATACCATCCAATCGCACCTAGTATCGCTTACAGATGGCACACACATCAT
TTCACCCATCCTTTTACACCCTACTACCATATCTCCACCACATCTCCACTCTTCTCGCTTATGAT
TGGATCTGTCATCGCTCATAACCCAGAACACACACAGTATCCCCACCAACGCACCCACTGCTACA
ATCCAGCCCAAACTAAACCCATTACCAAGCTCCCTAAGCGTCAATTAAACTCTCCCACCCCCTTT
CCATCCCCCACCTCACACTTTCCTTCGTTTCCTCGCATTGAAACTGTCATTGCTCATATCCCAGA
CCCACACAGTATCCCACCCACTGCTTAACCCAGCTTAGCCAAACCCATCTCCAACCATCAGTTAA
CCCCTGCCCCCTCCCTCTCTCCATTCCCCATCCCCACCCCTCCAC
Found at i:171852 original size:10 final size:10
Alignment explanation
Indices: 171828--171861 Score: 52
Period size: 10 Copynumber: 3.5 Consensus size: 10
171818 AAGCTCATAA
*
171828 CCCATACCA-
1 CCCACACCAT
171837 CCCACACCAT
1 CCCACACCAT
171847 CCCACACCAT
1 CCCACACCAT
171857 CCCAC
1 CCCAC
171862 CCCCCACCAC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 8 0.35
10 15 0.65
ACGTcount: A:0.29, C:0.62, G:0.00, T:0.09
Consensus pattern (10 bp):
CCCACACCAT
Left flanking sequence: Indices 171328 -- 171827
ATATATACAGAATGTGGAGAATACGCCAAAATACGGTAACTACACATACCATCCAATCGCACCTA
GTATCGCTTACAGATGGCACACACATCATTTCACCCATCCTTTTACACCCTACTACCATATCTCC
ACCACATCTCCACTCTTCTCGCTTATGATTGGATCTGTCATCGCTCATAACCCAGAACACACACA
GTATCCCCACCAACGCACCCACTGCTACAATCCAGCCCAAACTAAACCCATTACCAAGCTCCCTA
AGCGTCAATTAAACTCTCCCACCCCCTTTCCATCCCCCACCTCACACTTTCCTTCGTTTCCTCGC
ATTGAAACTGTCATTGCTCATATCCCAGACCCACACAGTATCCCACCCACTGCTTAACCCAGCTT
AGCCAAACCCATCTCCAACCATCAGTTAACCCCTGCCCCCTCCCTCTCTCCATTCCCCATCCCCA
CCCCTCCACCTTTTCGCTTATGATCGGATCTATCCAAGCTCATAA
Right flanking sequence: Indices 171862 -- 171943
CCCCCACCACTGCTACACCCAAACCAAACCACCCCCAAGCCTCAATCACCCCTCCCTACTTCCCT
CCCATTCCCTTCCATCC
Done.