Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold37
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 52695
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:47260 original size:181 final size:181
Alignment explanation
Indices: 46956--47296 Score: 592
Period size: 181 Copynumber: 1.9 Consensus size: 181
46946 ACGACGACGT
* * * * *
46956 TGGGTCACGATCGAAGTTTAGTAATCACCACTGATCCCGTAAATTTCATTTTTATTTGGGGCTGC
1 TGGGTCACGATCGAAGTTTAGGAATCACCACTAACCCCGTAAATTTCATTTTTATTTGAGGCCGC
47021 TTGTCGCCCACGTTGTGCTCGGGAGGTCGAGAGGAATCCTACATAGAGCAGCTCGCAAGCATGGT
66 TTGTCGCCCACGTTGTGCTCGGGAGGTCGAGAGGAATCCTACATAGAGCAGCTCGCAAGCATGGT
* *
47086 TGTGTCCGTGCTCCAACTACCGGTGATGCTTTGAGTTTCCCTAATTCGGAG
131 TGTGCCCGTGCTCCAACTACCAGTGATGCTTTGAGTTTCCCTAATTCGGAG
* *
47137 TGGGTCACGGTCGAAGTTTAGGAATCACCACTAACCCCGTAAATTTCATTTTTTTTTGAGGCCGC
1 TGGGTCACGATCGAAGTTTAGGAATCACCACTAACCCCGTAAATTTCATTTTTATTTGAGGCCGC
47202 TTGTCGCCCACGTTGTGCTCGGGAGGTCGAGAGGAATCCTACATAGAGCAGCTCGCAAGCATGGT
66 TTGTCGCCCACGTTGTGCTCGGGAGGTCGAGAGGAATCCTACATAGAGCAGCTCGCAAGCATGGT
*
47267 TTTGCCCGTGCTCCAACTACCAGTGATGCT
131 TGTGCCCGTGCTCCAACTACCAGTGATGCT
47297 CTCCCATATG
Statistics
Matches: 150, Mismatches: 10, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
181 150 1.00
ACGTcount: A:0.21, C:0.24, G:0.26, T:0.29
Consensus pattern (181 bp):
TGGGTCACGATCGAAGTTTAGGAATCACCACTAACCCCGTAAATTTCATTTTTATTTGAGGCCGC
TTGTCGCCCACGTTGTGCTCGGGAGGTCGAGAGGAATCCTACATAGAGCAGCTCGCAAGCATGGT
TGTGCCCGTGCTCCAACTACCAGTGATGCTTTGAGTTTCCCTAATTCGGAG
Left flanking sequence: Indices 46456 -- 46955
GTGGACATGGCGTAGAGCACCTCGTTGGAGAACTCAATAGGACCAGGGATCATGGTCAACTTGTG
CTCGGGCTGTTTGTAAGGGCAGGCAGACATTGTGGTATACGGACGGAATCTAATTCTGGTTAATC
TTGAGAACAAGCTTCTTTGCATCAACCAATGGGGGACAGATTTGTTCGACATTTTATACTGGATA
ACTTGCGGAGATATCCGCGCCTGCCTCTGTGTGGTATGCAGGACCGGGGAAAAGCGGTGGGGGGA
AGGCGGTTATCGAAGGTAGCGCCGCTTCGGAGCGCCCCTCCAGCAAACGTACGCCGAAAGTGTCA
GGGGGGGACGTTTTCTACTCGATCAATTGACTCAGTTGATTGTTCGAATTCATTCAGTTCCAGTG
AAGTGCATGACTCCTTAATTTTTCAGCCCAGGACAAAGAGATGGTCAAACTTTGTTTTGTGCACA
ATTGCTCTAACGGCACCGATCCTCGCTGGCCAAAAACGACGACGT
Right flanking sequence: Indices 47297 -- 47796
CTCCCATATGAATTCCCCTAATTCGGAGTTCCCACCATGCCCCCCTAAGATGCATTAAGCCGCTT
GTAGTGATTTCTATAAGTCGTGGTGTCTAAAAACACCAGTCTTTGTCATGGCCGATGGTAATCTG
GGGGGATTGTCCGAATCCCCAAAATCAACTGTCTCTTTTGGTCTCGGATACTCGCTAATTCGCGA
CAATTTGGGGAACCTATTTGTAATGTACCCCAATGGAACGTTGCAGCCAGCAATGGAGGTCAAGG
CGACCCTGCCAGAGAAACTACCGACTCCGACCTCGCCTAGTGCTACGGTGGCACCATTTTGGCAC
CCTACCAGAAAGTTGTGTTGTGGAACGCCTGCCCAGTGTGAAATACACCATTCAATCAGAGAGGC
TGTGCGTAGTAGCCCCATCGGACAGCTGCTGCGCTATGGTGAATACGATTCCGTTTATTCGGCTC
GCAATTCCCTATTTTCGCTGCGGACCCCGCTGGATCTTCGGAGCT
Done.