Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold1
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1066020
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
File 1 of 3
Found at i:351 original size:204 final size:204
Alignment explanation
Indices: 1--490 Score: 883
Period size: 204 Copynumber: 2.4 Consensus size: 204
*
1 CACCCGAGTCGGTCTCAGGGTTACCCTCAGCATCGGTGGTGGTCCAGGTGGTAGTGAATTCAGTA
1 CACCCGAGTCGGTCTCGGGGTTACCCTCAGCATCGGTGGTGGTCCAGGTGGTAGTGAATTCAGTA
* **
66 CAGTCAGGACAGCCAGTCTCAGACGCAGACTCGGGGGTGGCCTCAGAAGAAGTCTCCGAAGACGA
66 CAGTCGGGACAGCCAGTCTCAGACGCAGACTCGGAAGTGGCCTCAGAAGAAGTCTCCGAAGACGA
*
131 CTCCTTAGAAGGCTTAGGGAAGGCCGAAGTGGAGGTGGTCAACGACCCTTGCGAGTCAGTGGTCA
131 CTCCTTAGAAGGCTTAGGGAAAGCCGAAGTGGAGGTGGTCAACGACCCTTGCGAGTCAGTGGTCA
196 CCGCAACGA
196 CCGCAACGA
* * *
205 CACCCGAGTCGGTCTCGGGGTTACCTTCAGCATCGGTGGTAGTCCAGGTGGTAGTGAACTCAGTA
1 CACCCGAGTCGGTCTCGGGGTTACCCTCAGCATCGGTGGTGGTCCAGGTGGTAGTGAATTCAGTA
270 CAGTCGGGACAGCCAGTCTCAGACGCAGACTCGGAAGTGGCCTCAGAAGAAGTCTCCGAAGACGA
66 CAGTCGGGACAGCCAGTCTCAGACGCAGACTCGGAAGTGGCCTCAGAAGAAGTCTCCGAAGACGA
*
335 CTCCTTAGAGGGCTTAGGGAAAGCCGAAGTGGAGGTGGTCAACGACCCTTGCGAGTCAGTGGTCA
131 CTCCTTAGAAGGCTTAGGGAAAGCCGAAGTGGAGGTGGTCAACGACCCTTGCGAGTCAGTGGTCA
400 CCGCAACGA
196 CCGCAACGA
409 CACCCGAGTCGGTCTCGGGGTTACCCTCAGCATCGGTGGTGGTCCAGGTGGTAGTGAATTCAGTA
1 CACCCGAGTCGGTCTCGGGGTTACCCTCAGCATCGGTGGTGGTCCAGGTGGTAGTGAATTCAGTA
474 CAGTCAGGG-CAGCCAGT
66 CAGTC-GGGACAGCCAGT
491 GATGCTGGAG
Statistics
Matches: 273, Mismatches: 12, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
204 270 0.99
205 3 0.01
ACGTcount: A:0.23, C:0.26, G:0.33, T:0.19
Consensus pattern (204 bp):
CACCCGAGTCGGTCTCGGGGTTACCCTCAGCATCGGTGGTGGTCCAGGTGGTAGTGAATTCAGTA
CAGTCGGGACAGCCAGTCTCAGACGCAGACTCGGAAGTGGCCTCAGAAGAAGTCTCCGAAGACGA
CTCCTTAGAAGGCTTAGGGAAAGCCGAAGTGGAGGTGGTCAACGACCCTTGCGAGTCAGTGGTCA
CCGCAACGA
Left flanking sequence: None
Right flanking sequence: Indices 491 -- 990
GATGCTGGAGGACTCCTTAGAAGGCTTGGGGAAAGCCGAGGTGGAGGTGGTCAACGACCCTTGCG
AGTCAGTGGTCACCGCAACGACACCCGAGTCGGTCTCAGGGTTACCCTCAGCATCGGTGGTGGTC
CAGGTGGTAGTGAATTCAGTACAGTCAGGACAGCCAGTCTCAGACGCAGACTCGGAAGTGGCCTC
AGAAGAAGTCTCCGAAGACGACTCCTTAGAGGGCTTGGGGAAAGCCGAAGTGGAGGTGGTCAACG
ACCCTTGCGAGTCAGTGGTCACCGCAACGACACCCGAGTCAGTCTCAGGGTTACCCTCAGCATCG
GTGGTGGTCCAGGTGGTAGTGAACTCAGTACAGTCAGGGCAGCCAGTGATGCTTGATGATTTTGG
TAACTCGGACAGAGTGGATTCCGACGACGATTTTGGCGAAGTACTCGTGGAGGGAAGAGTTTCAG
AACTTTGCTCCGTGGTCGAAGGCGTTGGAGAAGCAGTTGACGGGA
Found at i:611 original size:168 final size:168
Alignment explanation
Indices: 333--658 Score: 607
Period size: 168 Copynumber: 1.9 Consensus size: 168
323 CTCCGAAGAC
*
333 GACTCCTTAGAGGGCTTAGGGAAAGCCGAAGTGGAGGTGGTCAACGACCCTTGCGAGTCAGTGGT
1 GACTCCTTAGAAGGCTTAGGGAAAGCCGAAGTGGAGGTGGTCAACGACCCTTGCGAGTCAGTGGT
*
398 CACCGCAACGACACCCGAGTCGGTCTCGGGGTTACCCTCAGCATCGGTGGTGGTCCAGGTGGTAG
66 CACCGCAACGACACCCGAGTCGGTCTCAGGGTTACCCTCAGCATCGGTGGTGGTCCAGGTGGTAG
*
463 TGAATTCAGTACAGTCAGGGCAGCCAGTGATGCTGGAG
131 TGAATTCAGTACAGTCAGGACAGCCAGTGATGCTGGAG
* *
501 GACTCCTTAGAAGGCTTGGGGAAAGCCGAGGTGGAGGTGGTCAACGACCCTTGCGAGTCAGTGGT
1 GACTCCTTAGAAGGCTTAGGGAAAGCCGAAGTGGAGGTGGTCAACGACCCTTGCGAGTCAGTGGT
566 CACCGCAACGACACCCGAGTCGGTCTCAGGGTTACCCTCAGCATCGGTGGTGGTCCAGGTGGTAG
66 CACCGCAACGACACCCGAGTCGGTCTCAGGGTTACCCTCAGCATCGGTGGTGGTCCAGGTGGTAG
631 TGAATTCAGTACAGTCAGGACAGCCAGT
131 TGAATTCAGTACAGTCAGGACAGCCAGT
659 CTCAGACGCA
Statistics
Matches: 153, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
168 153 1.00
ACGTcount: A:0.22, C:0.24, G:0.34, T:0.20
Consensus pattern (168 bp):
GACTCCTTAGAAGGCTTAGGGAAAGCCGAAGTGGAGGTGGTCAACGACCCTTGCGAGTCAGTGGT
CACCGCAACGACACCCGAGTCGGTCTCAGGGTTACCCTCAGCATCGGTGGTGGTCCAGGTGGTAG
TGAATTCAGTACAGTCAGGACAGCCAGTGATGCTGGAG
Left flanking sequence: Indices 1 -- 332
CACCCGAGTCGGTCTCAGGGTTACCCTCAGCATCGGTGGTGGTCCAGGTGGTAGTGAATTCAGTA
CAGTCAGGACAGCCAGTCTCAGACGCAGACTCGGGGGTGGCCTCAGAAGAAGTCTCCGAAGACGA
CTCCTTAGAAGGCTTAGGGAAGGCCGAAGTGGAGGTGGTCAACGACCCTTGCGAGTCAGTGGTCA
CCGCAACGACACCCGAGTCGGTCTCGGGGTTACCTTCAGCATCGGTGGTAGTCCAGGTGGTAGTG
AACTCAGTACAGTCGGGACAGCCAGTCTCAGACGCAGACTCGGAAGTGGCCTCAGAAGAAGTCTC
CGAAGAC
Right flanking sequence: Indices 659 -- 1158
CTCAGACGCAGACTCGGAAGTGGCCTCAGAAGAAGTCTCCGAAGACGACTCCTTAGAGGGCTTGG
GGAAAGCCGAAGTGGAGGTGGTCAACGACCCTTGCGAGTCAGTGGTCACCGCAACGACACCCGAG
TCAGTCTCAGGGTTACCCTCAGCATCGGTGGTGGTCCAGGTGGTAGTGAACTCAGTACAGTCAGG
GCAGCCAGTGATGCTTGATGATTTTGGTAACTCGGACAGAGTGGATTCCGACGACGATTTTGGCG
AAGTACTCGTGGAGGGAAGAGTTTCAGAACTTTGCTCCGTGGTCGAAGGCGTTGGAGAAGCAGTT
GACGGGATTCCTGACGAAGTCGTAGACGACGACGTGGGGTTAGAGGTTGGCGCCGAGCTGGTGGT
TGGGAGCTTAGTTGAGGATGACGTTGTCGAGGATGACGTTGTCGAGGAACTTGTAGTCGACGATT
TGGTTGTAGACGAAGAGGTAGTGGATGAAGTCGTTGTAGTGGGGT
Found at i:814 original size:372 final size:372
Alignment explanation
Indices: 129--868 Score: 1372
Period size: 372 Copynumber: 2.0 Consensus size: 372
119 CTCCGAAGAC
*
129 GACTCCTTAGAAGGCTTAGGGAAGGCCGAAGTGGAGGTGGTCAACGACCCTTGCGAGTCAGTGGT
1 GACTCCTTAGAAGGCTTAGGGAAAGCCGAAGTGGAGGTGGTCAACGACCCTTGCGAGTCAGTGGT
* *
194 CACCGCAACGACACCCGAGTCGGTCTCGGGGTTACCTTCAGCATCGGTGGTAGTCCAGGTGGTAG
66 CACCGCAACGACACCCGAGTCGGTCTCAGGGTTACCCTCAGCATCGGTGGTAGTCCAGGTGGTAG
*
259 TGAACTCAGTACAGTCGGGACAGCCAGTCTCAGACGCAGACTCGGAAGTGGCCTCAGAAGAAGTC
131 TGAACTCAGTACAGTCAGGACAGCCAGTCTCAGACGCAGACTCGGAAGTGGCCTCAGAAGAAGTC
324 TCCGAAGACGACTCCTTAGAGGGCTTAGGGAAAGCCGAAGTGGAGGTGGTCAACGACCCTTGCGA
196 TCCGAAGACGACTCCTTAGAGGGCTTAGGGAAAGCCGAAGTGGAGGTGGTCAACGACCCTTGCGA
* *
389 GTCAGTGGTCACCGCAACGACACCCGAGTCGGTCTCGGGGTTACCCTCAGCATCGGTGGTGGTCC
261 GTCAGTGGTCACCGCAACGACACCCGAGTCAGTCTCAGGGTTACCCTCAGCATCGGTGGTGGTCC
*
454 AGGTGGTAGTGAATTCAGTACAGTCAGGGCAGCCAGTGATGCTGGAG
326 AGGTGGTAGTGAACTCAGTACAGTCAGGGCAGCCAGTGATGCTGGAG
* *
501 GACTCCTTAGAAGGCTTGGGGAAAGCCGAGGTGGAGGTGGTCAACGACCCTTGCGAGTCAGTGGT
1 GACTCCTTAGAAGGCTTAGGGAAAGCCGAAGTGGAGGTGGTCAACGACCCTTGCGAGTCAGTGGT
*
566 CACCGCAACGACACCCGAGTCGGTCTCAGGGTTACCCTCAGCATCGGTGGTGGTCCAGGTGGTAG
66 CACCGCAACGACACCCGAGTCGGTCTCAGGGTTACCCTCAGCATCGGTGGTAGTCCAGGTGGTAG
*
631 TGAATTCAGTACAGTCAGGACAGCCAGTCTCAGACGCAGACTCGGAAGTGGCCTCAGAAGAAGTC
131 TGAACTCAGTACAGTCAGGACAGCCAGTCTCAGACGCAGACTCGGAAGTGGCCTCAGAAGAAGTC
*
696 TCCGAAGACGACTCCTTAGAGGGCTTGGGGAAAGCCGAAGTGGAGGTGGTCAACGACCCTTGCGA
196 TCCGAAGACGACTCCTTAGAGGGCTTAGGGAAAGCCGAAGTGGAGGTGGTCAACGACCCTTGCGA
761 GTCAGTGGTCACCGCAACGACACCCGAGTCAGTCTCAGGGTTACCCTCAGCATCGGTGGTGGTCC
261 GTCAGTGGTCACCGCAACGACACCCGAGTCAGTCTCAGGGTTACCCTCAGCATCGGTGGTGGTCC
826 AGGTGGTAGTGAACTCAGTACAGTCAGGGCAGCCAGTGATGCT
326 AGGTGGTAGTGAACTCAGTACAGTCAGGGCAGCCAGTGATGCT
869 TGATGATTTT
Statistics
Matches: 356, Mismatches: 12, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
372 356 1.00
ACGTcount: A:0.23, C:0.25, G:0.33, T:0.19
Consensus pattern (372 bp):
GACTCCTTAGAAGGCTTAGGGAAAGCCGAAGTGGAGGTGGTCAACGACCCTTGCGAGTCAGTGGT
CACCGCAACGACACCCGAGTCGGTCTCAGGGTTACCCTCAGCATCGGTGGTAGTCCAGGTGGTAG
TGAACTCAGTACAGTCAGGACAGCCAGTCTCAGACGCAGACTCGGAAGTGGCCTCAGAAGAAGTC
TCCGAAGACGACTCCTTAGAGGGCTTAGGGAAAGCCGAAGTGGAGGTGGTCAACGACCCTTGCGA
GTCAGTGGTCACCGCAACGACACCCGAGTCAGTCTCAGGGTTACCCTCAGCATCGGTGGTGGTCC
AGGTGGTAGTGAACTCAGTACAGTCAGGGCAGCCAGTGATGCTGGAG
Left flanking sequence: Indices 1 -- 128
CACCCGAGTCGGTCTCAGGGTTACCCTCAGCATCGGTGGTGGTCCAGGTGGTAGTGAATTCAGTA
CAGTCAGGACAGCCAGTCTCAGACGCAGACTCGGGGGTGGCCTCAGAAGAAGTCTCCGAAGAC
Right flanking sequence: Indices 869 -- 1368
TGATGATTTTGGTAACTCGGACAGAGTGGATTCCGACGACGATTTTGGCGAAGTACTCGTGGAGG
GAAGAGTTTCAGAACTTTGCTCCGTGGTCGAAGGCGTTGGAGAAGCAGTTGACGGGATTCCTGAC
GAAGTCGTAGACGACGACGTGGGGTTAGAGGTTGGCGCCGAGCTGGTGGTTGGGAGCTTAGTTGA
GGATGACGTTGTCGAGGATGACGTTGTCGAGGAACTTGTAGTCGACGATTTGGTTGTAGACGAAG
AGGTAGTGGATGAAGTCGTTGTAGTGGGGTAGGTTGTGTAAGTTTCACACAGGCCACAAACTGAT
GACACAGGATTCGCAGGTGGTGCACCATTATACGTGACAGCATTTACGAACGGGAGACTGAAACC
AGGAAAAACTTTCGTCGCCGTTGCAAATCCATTGGGGTTGTAGCCTTTTCCAATCTGGAACTTTT
GTGTGATCAATTTGAGTGGTGCTAAAGAGACTGTGAGCACACCTG
Found at i:1082 original size:15 final size:15
Alignment explanation
Indices: 1062--1096 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
1052 GAGCTTAGTT
1062 GAGGATGACGTTGTC
1 GAGGATGACGTTGTC
1077 GAGGATGACGTTGTC
1 GAGGATGACGTTGTC
1092 GAGGA
1 GAGGA
1097 ACTTGTAGTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.23, C:0.11, G:0.43, T:0.23
Consensus pattern (15 bp):
GAGGATGACGTTGTC
Left flanking sequence: Indices 562 -- 1061
TGGTCACCGCAACGACACCCGAGTCGGTCTCAGGGTTACCCTCAGCATCGGTGGTGGTCCAGGTG
GTAGTGAATTCAGTACAGTCAGGACAGCCAGTCTCAGACGCAGACTCGGAAGTGGCCTCAGAAGA
AGTCTCCGAAGACGACTCCTTAGAGGGCTTGGGGAAAGCCGAAGTGGAGGTGGTCAACGACCCTT
GCGAGTCAGTGGTCACCGCAACGACACCCGAGTCAGTCTCAGGGTTACCCTCAGCATCGGTGGTG
GTCCAGGTGGTAGTGAACTCAGTACAGTCAGGGCAGCCAGTGATGCTTGATGATTTTGGTAACTC
GGACAGAGTGGATTCCGACGACGATTTTGGCGAAGTACTCGTGGAGGGAAGAGTTTCAGAACTTT
GCTCCGTGGTCGAAGGCGTTGGAGAAGCAGTTGACGGGATTCCTGACGAAGTCGTAGACGACGAC
GTGGGGTTAGAGGTTGGCGCCGAGCTGGTGGTTGGGAGCTTAGTT
Right flanking sequence: Indices 1097 -- 1596
ACTTGTAGTCGACGATTTGGTTGTAGACGAAGAGGTAGTGGATGAAGTCGTTGTAGTGGGGTAGG
TTGTGTAAGTTTCACACAGGCCACAAACTGATGACACAGGATTCGCAGGTGGTGCACCATTATAC
GTGACAGCATTTACGAACGGGAGACTGAAACCAGGAAAAACTTTCGTCGCCGTTGCAAATCCATT
GGGGTTGTAGCCTTTTCCAATCTGGAACTTTTGTGTGATCAATTTGAGTGGTGCTAAAGAGACTG
TGAGCACACCTGTGGAAGGGTCGTAATCCTTACCCCAAACTGCGGTACTAAATCCAATGACATTA
CCGTTACCGAAACCTGCAATCGTGTAAACATTGGAGTCCGAAGTTGCTGTGAGGATCTGTGCATC
CGGACCATGCATCAAGTACACCTGATCGGGCGAAGTAGGATGAACACTCATTGTGAGACAAGATG
ATCCAAAAATTTGAATGCAGCCTTTTCCATTGAAGCCCGCATTCG
Found at i:12629 original size:39 final size:40
Alignment explanation
Indices: 12529--12644 Score: 118
Period size: 39 Copynumber: 2.9 Consensus size: 40
12519 CCTACCCAAG
12529 CCACCTGTCCACTTACTAGACCACCCAAGCCACCTATCTACCATA
1 CCACC-GT-CACTTACTAGACCACCCAAGCCACCTATCT---ATA
*
12574 CCACCGTC-C--ACT-GACCATCCAAGCCACCTAT-T-TA
1 CCACCGTCACTTACTAGACCACCCAAGCCACCTATCTATA
*
12608 CCACCGTCTACTTACTAGACCACCCAATCCACCTATC
1 CCACCGTC-ACTTACTAGACCACCCAAGCCACCTATC
12645 CACCGCTGAT
Statistics
Matches: 62, Mismatches: 3, Indels: 17
0.76 0.04 0.21
Matches are distributed among these distances:
34 10 0.16
36 1 0.02
38 4 0.06
39 35 0.56
40 3 0.05
42 1 0.02
43 1 0.02
44 2 0.03
45 5 0.08
ACGTcount: A:0.28, C:0.45, G:0.07, T:0.21
Consensus pattern (40 bp):
CCACCGTCACTTACTAGACCACCCAAGCCACCTATCTATA
Left flanking sequence: Indices 12029 -- 12528
TACCAAATTCACCCTCAACGACAAGTTCCGGCTCATCATGGAGGGGGGCTACGCTTACGTCATCG
TCAAGTTCTTGCTTCCGTTGCGTCTTGTGGTGTCGCTTGGGTTGATGCCGTGGTTTGCCCGGGTG
TTTGTGCTTCCGATCACCGGGTTGTTCAAGCGGAAAAAGAAGCCTGCCAAGGGGGCGGTGGACGC
GCCTGCCGACGTCAAAATCAAGAAGGTGACCAAACCGCGGCTTTAGGCGACCGATTTAGTGTATA
TAAACGAACCGAGCTCGCGTACCTGGAGTTAGGAGCCGGGTGGCGCCACTCGTAAATAGAAGCCA
GCCAAGAAATGGGGGGTAGACGGGTTTGGGGTTGGTTACGTGGCCCAACCGTTGGGTATAATAGA
GGAAGAATTGTCTGGCGACGTGGTAATGCGAAATTGTATGTTAAGAATGGAGACCAAGGGTTGAC
CTATTCGAAACAGCTACAACAAATCATCCCAACTGCCTACCCAAG
Right flanking sequence: Indices 12645 -- 13144
CACCGCTGATTGTCACCGGACTAATGACCCCTGTCACAAGTACAATGTCACAAACGCTTCCAAAC
TAGCCCCAAATGGCCTCAACCTGGTCCCAAATAGCCTCAACCTGGCCCTGTCCCAAATTAGCCTC
AGCCTAGCCCCAATTCCCCTACACTTCCACTACAATTATTCAATCATTGTTATATTGTACACCCA
CCGCGACGCAAAAACGTTTGTGGGAGATGCAGAATGCCATTAAAGTCATAAAGAGAACTAAACTA
GTCCAACGTCACCGCCATTTGCTCCTTGGTAAGGGGCACAAACTGGTCCAACGCGGCCACCAGCT
GCGTCAACGTCAACTGGTCCATCGCCCACTCCGGAACAAGGTTTTGGTTCACCTGGGGCATGACC
AGCAATTCACGGTCGTCAAAGTCAAACAACTTCGGCAACTCCTTGAGGTCGGGCTGCTGGGCGTA
GATCTGGTAGTTGGCCAGGTTCAGGTGGAACTGCTGGCTAAAGAT
Found at i:12738 original size:21 final size:21
Alignment explanation
Indices: 12714--12754 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
12704 CCAAACTAGC
*
12714 CCCAAATGGCCTCAACCTGGT
1 CCCAAATAGCCTCAACCTGGT
12735 CCCAAATAGCCTCAACCTGG
1 CCCAAATAGCCTCAACCTGG
12755 CCCTGTCCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.27, C:0.39, G:0.17, T:0.17
Consensus pattern (21 bp):
CCCAAATAGCCTCAACCTGGT
Left flanking sequence: Indices 12214 -- 12713
CGGTGGACGCGCCTGCCGACGTCAAAATCAAGAAGGTGACCAAACCGCGGCTTTAGGCGACCGAT
TTAGTGTATATAAACGAACCGAGCTCGCGTACCTGGAGTTAGGAGCCGGGTGGCGCCACTCGTAA
ATAGAAGCCAGCCAAGAAATGGGGGGTAGACGGGTTTGGGGTTGGTTACGTGGCCCAACCGTTGG
GTATAATAGAGGAAGAATTGTCTGGCGACGTGGTAATGCGAAATTGTATGTTAAGAATGGAGACC
AAGGGTTGACCTATTCGAAACAGCTACAACAAATCATCCCAACTGCCTACCCAAGCCACCTGTCC
ACTTACTAGACCACCCAAGCCACCTATCTACCATACCACCGTCCACTGACCATCCAAGCCACCTA
TTTACCACCGTCTACTTACTAGACCACCCAATCCACCTATCCACCGCTGATTGTCACCGGACTAA
TGACCCCTGTCACAAGTACAATGTCACAAACGCTTCCAAACTAGC
Right flanking sequence: Indices 12755 -- 13254
CCCTGTCCCAAATTAGCCTCAGCCTAGCCCCAATTCCCCTACACTTCCACTACAATTATTCAATC
ATTGTTATATTGTACACCCACCGCGACGCAAAAACGTTTGTGGGAGATGCAGAATGCCATTAAAG
TCATAAAGAGAACTAAACTAGTCCAACGTCACCGCCATTTGCTCCTTGGTAAGGGGCACAAACTG
GTCCAACGCGGCCACCAGCTGCGTCAACGTCAACTGGTCCATCGCCCACTCCGGAACAAGGTTTT
GGTTCACCTGGGGCATGACCAGCAATTCACGGTCGTCAAAGTCAAACAACTTCGGCAACTCCTTG
AGGTCGGGCTGCTGGGCGTAGATCTGGTAGTTGGCCAGGTTCAGGTGGAACTGCTGGCTAAAGAT
CTTGCGGTAGTTGGGCAACTTGGTGTTGGGGTTGCGCAACTCGTCAAAATAGGGGTCCACCAATG
CTTCGATGCACAGCACCCGGTCAATCGGCAGGTACTGCAACATGC
Found at i:12766 original size:26 final size:27
Alignment explanation
Indices: 12733--12784 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
12723 CCTCAACCTG
*
12733 GTCCCAAA-TAGCCTCAACCTGGCCCT
1 GTCCCAAATTAGCCTCAACCTAGCCCT
*
12759 GTCCCAAATTAGCCTCAGCCTAGCCC
1 GTCCCAAATTAGCCTCAACCTAGCCC
12785 CAATTCCCCT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 8 0.35
27 15 0.65
ACGTcount: A:0.23, C:0.42, G:0.15, T:0.19
Consensus pattern (27 bp):
GTCCCAAATTAGCCTCAACCTAGCCCT
Left flanking sequence: Indices 12233 -- 12732
CGTCAAAATCAAGAAGGTGACCAAACCGCGGCTTTAGGCGACCGATTTAGTGTATATAAACGAAC
CGAGCTCGCGTACCTGGAGTTAGGAGCCGGGTGGCGCCACTCGTAAATAGAAGCCAGCCAAGAAA
TGGGGGGTAGACGGGTTTGGGGTTGGTTACGTGGCCCAACCGTTGGGTATAATAGAGGAAGAATT
GTCTGGCGACGTGGTAATGCGAAATTGTATGTTAAGAATGGAGACCAAGGGTTGACCTATTCGAA
ACAGCTACAACAAATCATCCCAACTGCCTACCCAAGCCACCTGTCCACTTACTAGACCACCCAAG
CCACCTATCTACCATACCACCGTCCACTGACCATCCAAGCCACCTATTTACCACCGTCTACTTAC
TAGACCACCCAATCCACCTATCCACCGCTGATTGTCACCGGACTAATGACCCCTGTCACAAGTAC
AATGTCACAAACGCTTCCAAACTAGCCCCAAATGGCCTCAACCTG
Right flanking sequence: Indices 12785 -- 13284
CAATTCCCCTACACTTCCACTACAATTATTCAATCATTGTTATATTGTACACCCACCGCGACGCA
AAAACGTTTGTGGGAGATGCAGAATGCCATTAAAGTCATAAAGAGAACTAAACTAGTCCAACGTC
ACCGCCATTTGCTCCTTGGTAAGGGGCACAAACTGGTCCAACGCGGCCACCAGCTGCGTCAACGT
CAACTGGTCCATCGCCCACTCCGGAACAAGGTTTTGGTTCACCTGGGGCATGACCAGCAATTCAC
GGTCGTCAAAGTCAAACAACTTCGGCAACTCCTTGAGGTCGGGCTGCTGGGCGTAGATCTGGTAG
TTGGCCAGGTTCAGGTGGAACTGCTGGCTAAAGATCTTGCGGTAGTTGGGCAACTTGGTGTTGGG
GTTGCGCAACTCGTCAAAATAGGGGTCCACCAATGCTTCGATGCACAGCACCCGGTCAATCGGCA
GGTACTGCAACATGCGCTGCAAAAACGCAATGCACTCGGGCAGCA
Found at i:16747 original size:12 final size:12
Alignment explanation
Indices: 16730--16771 Score: 84
Period size: 12 Copynumber: 3.5 Consensus size: 12
16720 CACAGTACGA
16730 ACGGCTACGAGC
1 ACGGCTACGAGC
16742 ACGGCTACGAGC
1 ACGGCTACGAGC
16754 ACGGCTACGAGC
1 ACGGCTACGAGC
16766 ACGGCT
1 ACGGCT
16772 TCCTACCTGC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.24, C:0.33, G:0.33, T:0.10
Consensus pattern (12 bp):
ACGGCTACGAGC
Left flanking sequence: Indices 16230 -- 16729
TAAGCTTTCGTGACTATTGCGGTCACCTCATCGCGCTTTTCCTGGCAACCATCGAATTGTAGAAG
CTTTTATAGAGGCTAGACCATTGTGCGCGGCTCGACGTCGCTTGACGTATGGGCCCTTCGCTTAC
GCAGCCCCACCGGGAGCGAACGATGCGTGGTCCGGGGTGAGGTGGGGTGATCGGAGCGTGGTCGC
TAGATGCGTGGCGGGTGTAGTGCCTTATACGGGAATTATTCGAGCAACCGACCACCACCACGTTT
ACGAGGGTGATCAACCAACATACGGGCTAGCAACTATTGCCGGGGATAAGATTGGTGGAACAATG
CTGGAAAGCAACCCGGACAATCTGAGCATCGTAAATGCCTGTCCGATTGTAGATGCCAAGGGTTC
TTGTGACATTGCCAGGCACGGTCTTTTGACACGACACAACGCACCGAAACAAAGAACGGTGGGAC
AAACAGCACCAACGGTTGACCTACGGGTACAAGGCCACAGTACGA
Right flanking sequence: Indices 16772 -- 17271
TCCTACCTGCACGATTACCAACACAATCTATTAGACCTTCTAAACTTTATGAGTATGCAGCCATC
GTTGCCTCCACCTCCAGGGCCTGCGGCCGGCGCAGCCCCTCGTAGCTGAGCATGCGGTCAAGCAC
CGCCAACACGTTGCTGTCCGGGCACCGGGGGAACACCAGCGACATTTCCAGCCGCGGGTTCGGCG
CCAATTTGAGCTGGGTGAAGTGGTACTTTTCCAGCGCCATTGTGGGCCACCCGAGCGGGCCGTCG
ACGTCACCAGCAACCGGGGTGCCCAAAACCTTGAACACTGAGCTCACCAACGCAATGTCGTTACC
CCCACCCATGTCGATGACCGACTTGTTTGCGTGCTGGCCAAACACCACCGTCATCACCACCGCGA
GCGACCACACGTCGATCTCGGGGCCGTATTCGGTGTAGCCAAAACACAACTCGGGTGCTTTGTAG
ATGCCCGTGCACACATCGGTGTACTTTTCGTGGGCTGGCTCGTCG
Found at i:20418 original size:13 final size:13
Alignment explanation
Indices: 20400--20426 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
20390 ATTCCACAAA
20400 CTAGCCAGTCCAC
1 CTAGCCAGTCCAC
20413 CTAGCCAGTCCAC
1 CTAGCCAGTCCAC
20426 C
1 C
20427 ACTGGTGCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.48, G:0.15, T:0.15
Consensus pattern (13 bp):
CTAGCCAGTCCAC
Left flanking sequence: Indices 19900 -- 20399
CCAACATCGGGCATGGCGTACAAGGTGTATGCACCTATACTCTACTACCGACCTTTACAACTGCC
AAACAACTAGCCACGGATACCTTCCCCCGCAGGCGTTTTCTCGGCATTGCCTTACGGTCACCCCA
CCCGCTGCAAGCGAACCTGTCAGGTGGTCGATCAGCAGCTCGGATCAGCAACAGGTAGGTCCGGT
CCAGGGCCCATTCAGGGCTCCATGCACGATAGACCGCTCCATTTGACCGACCCCTTCCGGGTCCG
ATGACTCGGCTCCGCGAGCGGCCGTCAGCTGGTGGGTGATCCATGTTTACGAGCTGGTGCATTAT
GCGTTTCACCTGGGTACCAGGGAAACCCAGTTTGAGCTTTGGAGCCACACCCCCGTCTTTTTGGG
CCTCATACTTGGGTGCCAATTGACTCAATTTGAGTTTTTGAGCTACAAATGACCGTCCAAGCCCA
GAGAATGGCTATGAATCTATTCACATTGAGCTTGTATTCCACAAA
Right flanking sequence: Indices 20427 -- 20926
ACTGGTGCCCACCAGTGTCTATTCAAGATGGCAAACTGCACCACACTACGCAATTGTCTCAAAGC
TCTCTTCGATTCAGCTTCCACCTCTATGCCTCTATAATGCCGTCTATAAATGACCTGTCAACTAA
AATTAAGCCCCGAGAGATCCTGGAGGTACAGACTCGGGGTGTTTTCCTTGGAGGGCGCCAGCACA
GGCTCCTCGGACCCAGGGCGCTGGCTCGACGCAAGAGTGTCCCCCAGCGTGGAGATGGTGTCCGC
AGCACCAAAGTCGTAGTCCGTAAACGCCACAAGCGTGTGGCTAGCATCGAACTGGCTCCGGAGCC
CCTGGCTGATCTCGAGCTGCTCGCGGGCAAGCTCCTGCTCCACCTCACGCCGCACCGCCGCCTCG
TCGATCGCGTAGTTGGCGGGCTCAAAGATGTTGAGAAAGTAGAACGTCCCCAGGATGTTCTCGTC
TATAACCACCGTGCCAGAGTCAATGCACTGGCCAATCTCCTCCAC
Found at i:30418 original size:33 final size:33
Alignment explanation
Indices: 30376--30441 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
30366 CCCCGAAGAA
* *
30376 CCGAGGCAACGCCGTTGCTCTCCCCACCGAGGC
1 CCGAGGCAACGCCGTTCCCCTCCCCACCGAGGC
* *
30409 CCGAGGCAACGCGGTTCCCCTCCCCACGGAGGC
1 CCGAGGCAACGCCGTTCCCCTCCCCACCGAGGC
30442 TCGTGCCCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.15, C:0.45, G:0.29, T:0.11
Consensus pattern (33 bp):
CCGAGGCAACGCCGTTCCCCTCCCCACCGAGGC
Left flanking sequence: Indices 29876 -- 30375
GAACCTCGTCCCACAAAGCCAACCACCAGAGAGAGTGCACCCGACCCCGCGAAACTGCGCAAGCC
CACCGAAGGCCGCAGCTCGCTCTTTGTCCCGCTCCCACAGCGTGAACCGATAGCCCTTCCGAAAC
CGTCGCTGGCGACGAAACGGACGGTCTCGCAACGAGCACTGCTATCACCCGTCAAAATCCCTTCC
GAGTTCTTGAAGCGACCCACCCCACCCCTGTACCTTGAGGTTCCAGCCCGCCGCCAACCGCTGTT
GCCGCTGTCGTCACCGCTCAAGTTTGCCGCTCCCACCCGAGCCAGTGTGGCCAGAAGCAAGCCCG
CACTGCGCAAAGCGTCGCCGCGGAGGACCACCCCGCGCAAGACCAACCGCTTTTTGACCACCACG
CTCAATTCATCCCCGAACAAGGTCACGGCGTCAGCCCCGACTAAATCGGTAACGACTCCACGCCA
GAAGCTCAACCCAGTGGTGCTCAATCCACGCATCACCCCGAAGAA
Right flanking sequence: Indices 30442 -- 30941
TCGTGCCCGCAAACCAACAAAACCCGTGGAAAGAGCCCCCGACCTCCATTGGCGCAAGCTCGAAG
AGGACCGCTACTCAGCGGAAACACTTCCATCGATCCCCGACGACGTACGCCAGTGTAAGGTGTTT
GCGGAGTGGGCTGAATCGCCCAACGTGCGCAAGCAGGTTCGCGAGCAGCGGCACACAGATCCACG
GGAAATCTTCCCTCCGATGCAACCGTTTGACGGGCACGAGGTGTTTGCGGACCATCCATCGCGGC
TCCGAGGACGTCCGTCCCCGTTCACGCTGCCGTTGAAGGAAGACGTGGAGCGCGAGGAGCGGATC
TACGCCAGACACATGGGCTACCGGCCGTAGTTCAGGCGTTATTGCATTTGAACGGTGGCGACAAA
CTGTGGAGACAAGCGGTGGTGGCAATGGGTATATTGTTGGTGGTATCCTAGTGGTATTCTCCATG
TACCAATCCAGCACCAGATTGCGCGAACTGAGTTTGAACACCAAC
Found at i:31381 original size:13 final size:13
Alignment explanation
Indices: 31365--31436 Score: 83
Period size: 13 Copynumber: 5.6 Consensus size: 13
31355 TCAAGGATTT
31365 TCACCAAGTATCC
1 TCACCAAGTATCC
31378 TCACCAAGTATCC
1 TCACCAAGTATCC
* *
31391 TCACTAAGGATCC
1 TCACCAAGTATCC
*
31404 TTACCAA-TATCC
1 TCACCAAGTATCC
** *
31416 TCACCAAACAACC
1 TCACCAAGTATCC
31429 TCACCAAG
1 TCACCAAG
31437 CACCACCACC
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
12 10 0.20
13 39 0.80
ACGTcount: A:0.35, C:0.38, G:0.07, T:0.21
Consensus pattern (13 bp):
TCACCAAGTATCC
Left flanking sequence: Indices 30865 -- 31364
TTGTTGGTGGTATCCTAGTGGTATTCTCCATGTACCAATCCAGCACCAGATTGCGCGAACTGAGT
TTGAACACCAACTGAACAAAGCATCAGCAGAGCACCAGTATAGCACTGGCAACCACAGAGCATTG
TTAACGATGTCATCACAATACCTACCGTCTACATCACGTGTACCATTCCTTACCCCATGCCCTCG
GGCACTGCATTACTATCGCATAATATATACCGGGCCTTGCGCCTATAAACAACCAGATGGCCCAC
CAGACACTGTGTAGACCAGTCTACAACCAACCAGTCACCAGTAAACCCACGTGCAACCACCACCA
AATCACCCGACCACATCACCCAACCACCGACCAACATCACCCCATCCGTCACCCCACACCAATCA
GGAGTAAATCTAAACAATAAAGGAAACCAATGCTTTGCCATACATAGCGAACCACACATGATCGT
GAAACCCCCATCTTCACCAACAAACCTCACCATCATCAAGGATTT
Right flanking sequence: Indices 31437 -- 31936
CACCACCACCAACCACCTAGGAAACGATATGGTGCCAACGGCCCAGCTTCTGATGGTAGTGGGGA
GTGATGAAATCGGGCACTCGTCGCGAATAACAATGGTAGCACAAGTAGGCTCCACAGTTATGGCA
CAAGTATTGGGGCTCGTTGCACTTGGAACACTTGGTCAGCACCCTCTCCTGGCACGGAGCACTGC
AACAGTACATGACGCTTGCCACCAGCGAACGCCCCGAGGCGCCCTATATACCCGTCCATGCGCCA
TCATGTGCGTTTCGCTAATGCCGCCTGCTTGTTCCATTTGGCAATCCACGCGTCAACGTCAGCCA
GCGGCACAACGAACAATTTGAGCGCGTTGTCAAACAACGGCGCCTTGGGCTTGTCGCTCATCATC
GCCTCGTTGACCGCCACCTTCTTGCCCACCTTGACAAGACCGCCAGTGGTGGTCTCCATAAACAC
TTGCAACAGTTTGACGGTAAACCCGGGATGGGCATCAAACCACTC
Found at i:31434 original size:25 final size:26
Alignment explanation
Indices: 31376--31436 Score: 70
Period size: 25 Copynumber: 2.4 Consensus size: 26
31366 CACCAAGTAT
* ** *
31376 CCTCACCAAGTATCCTCACTAAGGAT
1 CCTCACCAAGTATCCTCACCAAACAA
*
31402 CCTTACCAA-TATCCTCACCAAACAA
1 CCTCACCAAGTATCCTCACCAAACAA
31427 CCTCACCAAG
1 CCTCACCAAG
31437 CACCACCACC
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
25 20 0.71
26 8 0.29
ACGTcount: A:0.34, C:0.39, G:0.07, T:0.20
Consensus pattern (26 bp):
CCTCACCAAGTATCCTCACCAAACAA
Left flanking sequence: Indices 30876 -- 31375
ATCCTAGTGGTATTCTCCATGTACCAATCCAGCACCAGATTGCGCGAACTGAGTTTGAACACCAA
CTGAACAAAGCATCAGCAGAGCACCAGTATAGCACTGGCAACCACAGAGCATTGTTAACGATGTC
ATCACAATACCTACCGTCTACATCACGTGTACCATTCCTTACCCCATGCCCTCGGGCACTGCATT
ACTATCGCATAATATATACCGGGCCTTGCGCCTATAAACAACCAGATGGCCCACCAGACACTGTG
TAGACCAGTCTACAACCAACCAGTCACCAGTAAACCCACGTGCAACCACCACCAAATCACCCGAC
CACATCACCCAACCACCGACCAACATCACCCCATCCGTCACCCCACACCAATCAGGAGTAAATCT
AAACAATAAAGGAAACCAATGCTTTGCCATACATAGCGAACCACACATGATCGTGAAACCCCCAT
CTTCACCAACAAACCTCACCATCATCAAGGATTTTCACCAAGTAT
Right flanking sequence: Indices 31437 -- 31936
CACCACCACCAACCACCTAGGAAACGATATGGTGCCAACGGCCCAGCTTCTGATGGTAGTGGGGA
GTGATGAAATCGGGCACTCGTCGCGAATAACAATGGTAGCACAAGTAGGCTCCACAGTTATGGCA
CAAGTATTGGGGCTCGTTGCACTTGGAACACTTGGTCAGCACCCTCTCCTGGCACGGAGCACTGC
AACAGTACATGACGCTTGCCACCAGCGAACGCCCCGAGGCGCCCTATATACCCGTCCATGCGCCA
TCATGTGCGTTTCGCTAATGCCGCCTGCTTGTTCCATTTGGCAATCCACGCGTCAACGTCAGCCA
GCGGCACAACGAACAATTTGAGCGCGTTGTCAAACAACGGCGCCTTGGGCTTGTCGCTCATCATC
GCCTCGTTGACCGCCACCTTCTTGCCCACCTTGACAAGACCGCCAGTGGTGGTCTCCATAAACAC
TTGCAACAGTTTGACGGTAAACCCGGGATGGGCATCAAACCACTC
Found at i:33444 original size:11 final size:12
Alignment explanation
Indices: 33403--33480 Score: 80
Period size: 11 Copynumber: 6.9 Consensus size: 12
33393 ACACCGTAAA
33403 ACCACGGCACT-
1 ACCACGGCACTC
*
33414 ATTCCACGGCA-TT
1 A--CCACGGCACTC
33427 A-CACGGCACTC
1 ACCACGGCACTC
33438 -CCACGGCACTC
1 ACCACGGCACTC
33449 -CCACGGCAC-C
1 ACCACGGCACTC
33459 ACCACGGCAC-C
1 ACCACGGCACTC
33470 ACCACGGCACT
1 ACCACGGCACT
33481 TTCGAGCGGC
Statistics
Matches: 59, Mismatches: 1, Indels: 13
0.81 0.01 0.18
Matches are distributed among these distances:
10 8 0.14
11 41 0.69
12 1 0.02
13 9 0.15
ACGTcount: A:0.24, C:0.47, G:0.18, T:0.10
Consensus pattern (12 bp):
ACCACGGCACTC
Left flanking sequence: Indices 32903 -- 33402
AAAAGAGAAGTATGGGGCAGCACGTGAGTGGAAGGTGGTGGAAGAACAGGTGGGCAAACGGGTGA
ACGCTAGCGAGAAGGCGGTGACGTAGGGCAAGGGGGTGCTGAGGGGCAGCACAGTGCGGACCTGT
GACTAAAAAACGTGGTCTTACGGCGTGGACGGCATTTGCTAGCGAGTAGGCGTGTGGCGGAACTG
GTGAGAATTTAGGGGAGGTTATCGATACTACTAAACACCTAAAAACGGTGAAAGAAAGAGGTTGT
AGTAGCAAAAAGATTGACACGGAGGGTTGTGGCAACCTAGATCGTAGTGGGACCAATTGTTCGAC
CACTTTAGAGAATGTGAAACAACCTCACCAAAATCTTACGACAAAACCACTAGTAGTACGGCACC
GCATACGGCACAGGGCGGCGATGGCCACGGCAATTGAACCCCATTTGCAGCCATGGTACCTTAAT
GTGACACACGAAGCTCGTGATTATACAGAAATACGACACCGTAAA
Right flanking sequence: Indices 33481 -- 33980
TTCGAGCGGCAATACTACCCTGGAGCTACGGCAATACGACACAGACACGGCGAGGCACGGCAAAA
AGTTAGGTCATTTGGAGCGTCCCCCACCTTAGTGTCCCGTACAGTAACGTAAAGATCGACGATCG
CCCAGTTAAACTACAACCTGGGTGATGGTACGACAATGCAATCGAACACTTTGTTTCGGTGGACT
TGCCATGAGACGATACCATGACACCACCCATTGAACTTAACCGTCACGATTGTTTCACTACCCAT
CACACCAAGCCAGCACACTTGTCACCCATTACACTAAAGCATCTACCTGTTACACCACCTAGTAC
ACTAAACCACCAACCTACTACACTTTTACCCCCTTACGCTACTCCGTACTACTACTCCATGGTAC
GACCCCAGAATACTACCCCATAATACTACCCCATGATACTACCCCATAATACTACTCCATACGTT
ACCATAACCCATGATATTACCCCAGTCGTTACCATGACATTACCC
Found at i:33898 original size:39 final size:39
Alignment explanation
Indices: 33855--33931 Score: 109
Period size: 39 Copynumber: 2.0 Consensus size: 39
33845 TACTCCGTAC
* *
33855 TACTACTCCATGGTACGACCCCAGAATACTACCCCATAA
1 TACTACCCCATGATACGACCCCAGAATACTACCCCATAA
* * *
33894 TACTACCCCATGATACTACCCCATAATACTACTCCATA
1 TACTACCCCATGATACGACCCCAGAATACTACCCCATA
33932 CGTTACCATA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.34, C:0.36, G:0.06, T:0.23
Consensus pattern (39 bp):
TACTACCCCATGATACGACCCCAGAATACTACCCCATAA
Left flanking sequence: Indices 33355 -- 33854
AATGTGACACACGAAGCTCGTGATTATACAGAAATACGACACCGTAAAACCACGGCACTATTCCA
CGGCATTACACGGCACTCCCACGGCACTCCCACGGCACCACCACGGCACCACCACGGCACTTTCG
AGCGGCAATACTACCCTGGAGCTACGGCAATACGACACAGACACGGCGAGGCACGGCAAAAAGTT
AGGTCATTTGGAGCGTCCCCCACCTTAGTGTCCCGTACAGTAACGTAAAGATCGACGATCGCCCA
GTTAAACTACAACCTGGGTGATGGTACGACAATGCAATCGAACACTTTGTTTCGGTGGACTTGCC
ATGAGACGATACCATGACACCACCCATTGAACTTAACCGTCACGATTGTTTCACTACCCATCACA
CCAAGCCAGCACACTTGTCACCCATTACACTAAAGCATCTACCTGTTACACCACCTAGTACACTA
AACCACCAACCTACTACACTTTTACCCCCTTACGCTACTCCGTAC
Right flanking sequence: Indices 33932 -- 34431
CGTTACCATAACCCATGATATTACCCCAGTCGTTACCATGACATTACCCCATAATCCTACCCCAT
AATAACACCCCAATACTACCCCATAACACCACCCCATTACTACCCCACACTACCCGTACATTCCA
CCCATCACATCCCCACAGCACATCTCCACAGCACATCCCCACAATACCACCCTTACATTCCACCC
AACCTCCGTACATTCCACCAACCCTCGTCTATGTCTATTATGTCATGCTATTCAAAGTCTCGCTG
GATGATGAGCGGCACCCGGAGCACCAACTTCTCCCCGTTGACCCGGAACTTGAGCCGGATGTAGT
ACACCCGGGCAAACAAGCACGACTGGAAGTCCGGCACCAACTGGGTGTCGCTGGGAAGCAGCGCC
ATGTCCACCGCCACCGAAAACGTCTTGTGGTGGGTGCGGCTCGCCAGCTTCCACGGCACCAGCGC
AATCGACAGCACCACCTCGCCGTCGTGGCGCACCGCCGCGGTGTC
Found at i:33930 original size:13 final size:13
Alignment explanation
Indices: 33872--33931 Score: 93
Period size: 13 Copynumber: 4.6 Consensus size: 13
33862 CCATGGTACG
*
33872 ACCCCAGAATACT
1 ACCCCATAATACT
33885 ACCCCATAATACT
1 ACCCCATAATACT
*
33898 ACCCCATGATACT
1 ACCCCATAATACT
33911 ACCCCATAATACT
1 ACCCCATAATACT
*
33924 ACTCCATA
1 ACCCCATA
33932 CGTTACCATA
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 43 1.00
ACGTcount: A:0.37, C:0.38, G:0.03, T:0.22
Consensus pattern (13 bp):
ACCCCATAATACT
Left flanking sequence: Indices 33372 -- 33871
TCGTGATTATACAGAAATACGACACCGTAAAACCACGGCACTATTCCACGGCATTACACGGCACT
CCCACGGCACTCCCACGGCACCACCACGGCACCACCACGGCACTTTCGAGCGGCAATACTACCCT
GGAGCTACGGCAATACGACACAGACACGGCGAGGCACGGCAAAAAGTTAGGTCATTTGGAGCGTC
CCCCACCTTAGTGTCCCGTACAGTAACGTAAAGATCGACGATCGCCCAGTTAAACTACAACCTGG
GTGATGGTACGACAATGCAATCGAACACTTTGTTTCGGTGGACTTGCCATGAGACGATACCATGA
CACCACCCATTGAACTTAACCGTCACGATTGTTTCACTACCCATCACACCAAGCCAGCACACTTG
TCACCCATTACACTAAAGCATCTACCTGTTACACCACCTAGTACACTAAACCACCAACCTACTAC
ACTTTTACCCCCTTACGCTACTCCGTACTACTACTCCATGGTACG
Right flanking sequence: Indices 33932 -- 34431
CGTTACCATAACCCATGATATTACCCCAGTCGTTACCATGACATTACCCCATAATCCTACCCCAT
AATAACACCCCAATACTACCCCATAACACCACCCCATTACTACCCCACACTACCCGTACATTCCA
CCCATCACATCCCCACAGCACATCTCCACAGCACATCCCCACAATACCACCCTTACATTCCACCC
AACCTCCGTACATTCCACCAACCCTCGTCTATGTCTATTATGTCATGCTATTCAAAGTCTCGCTG
GATGATGAGCGGCACCCGGAGCACCAACTTCTCCCCGTTGACCCGGAACTTGAGCCGGATGTAGT
ACACCCGGGCAAACAAGCACGACTGGAAGTCCGGCACCAACTGGGTGTCGCTGGGAAGCAGCGCC
ATGTCCACCGCCACCGAAAACGTCTTGTGGTGGGTGCGGCTCGCCAGCTTCCACGGCACCAGCGC
AATCGACAGCACCACCTCGCCGTCGTGGCGCACCGCCGCGGTGTC
Found at i:33947 original size:30 final size:30
Alignment explanation
Indices: 33887--33970 Score: 79
Period size: 30 Copynumber: 2.9 Consensus size: 30
33877 AGAATACTAC
* *
33887 CCCATAATACTACCCCA-T-GATA-C-TAC
1 CCCATAATACTACCCCAGTCGTTACCATAA
*
33913 CCCATAATACTACTCCA-TACGTTACCATAA
1 CCCATAATACTACCCCAGT-CGTTACCATAA
* *
33943 CCCATGATATTACCCCAGTCGTTACCAT
1 CCCATAATACTACCCCAGTCGTTACCAT
33971 GACATTACCC
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
26 17 0.36
28 3 0.06
29 1 0.02
30 25 0.53
31 1 0.02
ACGTcount: A:0.32, C:0.36, G:0.06, T:0.26
Consensus pattern (30 bp):
CCCATAATACTACCCCAGTCGTTACCATAA
Left flanking sequence: Indices 33387 -- 33886
AATACGACACCGTAAAACCACGGCACTATTCCACGGCATTACACGGCACTCCCACGGCACTCCCA
CGGCACCACCACGGCACCACCACGGCACTTTCGAGCGGCAATACTACCCTGGAGCTACGGCAATA
CGACACAGACACGGCGAGGCACGGCAAAAAGTTAGGTCATTTGGAGCGTCCCCCACCTTAGTGTC
CCGTACAGTAACGTAAAGATCGACGATCGCCCAGTTAAACTACAACCTGGGTGATGGTACGACAA
TGCAATCGAACACTTTGTTTCGGTGGACTTGCCATGAGACGATACCATGACACCACCCATTGAAC
TTAACCGTCACGATTGTTTCACTACCCATCACACCAAGCCAGCACACTTGTCACCCATTACACTA
AAGCATCTACCTGTTACACCACCTAGTACACTAAACCACCAACCTACTACACTTTTACCCCCTTA
CGCTACTCCGTACTACTACTCCATGGTACGACCCCAGAATACTAC
Right flanking sequence: Indices 33971 -- 34470
GACATTACCCCATAATCCTACCCCATAATAACACCCCAATACTACCCCATAACACCACCCCATTA
CTACCCCACACTACCCGTACATTCCACCCATCACATCCCCACAGCACATCTCCACAGCACATCCC
CACAATACCACCCTTACATTCCACCCAACCTCCGTACATTCCACCAACCCTCGTCTATGTCTATT
ATGTCATGCTATTCAAAGTCTCGCTGGATGATGAGCGGCACCCGGAGCACCAACTTCTCCCCGTT
GACCCGGAACTTGAGCCGGATGTAGTACACCCGGGCAAACAAGCACGACTGGAAGTCCGGCACCA
ACTGGGTGTCGCTGGGAAGCAGCGCCATGTCCACCGCCACCGAAAACGTCTTGTGGTGGGTGCGG
CTCGCCAGCTTCCACGGCACCAGCGCAATCGACAGCACCACCTCGCCGTCGTGGCGCACCGCCGC
GGTGTCAAACCGGAGGTAGTCGTACTTGGTGGTCAAGTTGGCAAT
Found at i:34006 original size:13 final size:13
Alignment explanation
Indices: 33976--34043 Score: 65
Period size: 13 Copynumber: 5.5 Consensus size: 13
33966 ACCATGACAT
*
33976 TACCCCATAATCC
1 TACCCCATAATAC
33989 TACCCCATAATAAC
1 TACCCCATAAT-AC
34003 -ACCCC--AATAC
1 TACCCCATAATAC
*
34013 TACCCCATAACAC
1 TACCCCATAATAC
*
34026 CACCCCAT--TAC
1 TACCCCATAATAC
34037 TACCCCA
1 TACCCCA
34044 CACTACCCGT
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
10 2 0.04
11 16 0.35
13 27 0.59
14 1 0.02
ACGTcount: A:0.35, C:0.47, G:0.00, T:0.18
Consensus pattern (13 bp):
TACCCCATAATAC
Left flanking sequence: Indices 33476 -- 33975
GCACTTTCGAGCGGCAATACTACCCTGGAGCTACGGCAATACGACACAGACACGGCGAGGCACGG
CAAAAAGTTAGGTCATTTGGAGCGTCCCCCACCTTAGTGTCCCGTACAGTAACGTAAAGATCGAC
GATCGCCCAGTTAAACTACAACCTGGGTGATGGTACGACAATGCAATCGAACACTTTGTTTCGGT
GGACTTGCCATGAGACGATACCATGACACCACCCATTGAACTTAACCGTCACGATTGTTTCACTA
CCCATCACACCAAGCCAGCACACTTGTCACCCATTACACTAAAGCATCTACCTGTTACACCACCT
AGTACACTAAACCACCAACCTACTACACTTTTACCCCCTTACGCTACTCCGTACTACTACTCCAT
GGTACGACCCCAGAATACTACCCCATAATACTACCCCATGATACTACCCCATAATACTACTCCAT
ACGTTACCATAACCCATGATATTACCCCAGTCGTTACCATGACAT
Right flanking sequence: Indices 34044 -- 34543
CACTACCCGTACATTCCACCCATCACATCCCCACAGCACATCTCCACAGCACATCCCCACAATAC
CACCCTTACATTCCACCCAACCTCCGTACATTCCACCAACCCTCGTCTATGTCTATTATGTCATG
CTATTCAAAGTCTCGCTGGATGATGAGCGGCACCCGGAGCACCAACTTCTCCCCGTTGACCCGGA
ACTTGAGCCGGATGTAGTACACCCGGGCAAACAAGCACGACTGGAAGTCCGGCACCAACTGGGTG
TCGCTGGGAAGCAGCGCCATGTCCACCGCCACCGAAAACGTCTTGTGGTGGGTGCGGCTCGCCAG
CTTCCACGGCACCAGCGCAATCGACAGCACCACCTCGCCGTCGTGGCGCACCGCCGCGGTGTCAA
ACCGGAGGTAGTCGTACTTGGTGGTCAAGTTGGCAATGGCCTTGATGTCCATCAGCAACTCGTTG
TCGATGGTAAACCCCTTGGTCTTCATGAGCCGCGCGATCTCCTGG
Found at i:34015 original size:24 final size:24
Alignment explanation
Indices: 33988--34043 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
33978 CCCCATAATC
*
33988 CTACCCCATAATAACACCCCAATA
1 CTACCCCATAACAACACCCCAATA
* *
34012 CTACCCCATAACACCACCCCATTA
1 CTACCCCATAACAACACCCCAATA
34036 CTACCCCA
1 CTACCCCA
34044 CACTACCCGT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.36, C:0.48, G:0.00, T:0.16
Consensus pattern (24 bp):
CTACCCCATAACAACACCCCAATA
Left flanking sequence: Indices 33488 -- 33987
GGCAATACTACCCTGGAGCTACGGCAATACGACACAGACACGGCGAGGCACGGCAAAAAGTTAGG
TCATTTGGAGCGTCCCCCACCTTAGTGTCCCGTACAGTAACGTAAAGATCGACGATCGCCCAGTT
AAACTACAACCTGGGTGATGGTACGACAATGCAATCGAACACTTTGTTTCGGTGGACTTGCCATG
AGACGATACCATGACACCACCCATTGAACTTAACCGTCACGATTGTTTCACTACCCATCACACCA
AGCCAGCACACTTGTCACCCATTACACTAAAGCATCTACCTGTTACACCACCTAGTACACTAAAC
CACCAACCTACTACACTTTTACCCCCTTACGCTACTCCGTACTACTACTCCATGGTACGACCCCA
GAATACTACCCCATAATACTACCCCATGATACTACCCCATAATACTACTCCATACGTTACCATAA
CCCATGATATTACCCCAGTCGTTACCATGACATTACCCCATAATC
Right flanking sequence: Indices 34044 -- 34543
CACTACCCGTACATTCCACCCATCACATCCCCACAGCACATCTCCACAGCACATCCCCACAATAC
CACCCTTACATTCCACCCAACCTCCGTACATTCCACCAACCCTCGTCTATGTCTATTATGTCATG
CTATTCAAAGTCTCGCTGGATGATGAGCGGCACCCGGAGCACCAACTTCTCCCCGTTGACCCGGA
ACTTGAGCCGGATGTAGTACACCCGGGCAAACAAGCACGACTGGAAGTCCGGCACCAACTGGGTG
TCGCTGGGAAGCAGCGCCATGTCCACCGCCACCGAAAACGTCTTGTGGTGGGTGCGGCTCGCCAG
CTTCCACGGCACCAGCGCAATCGACAGCACCACCTCGCCGTCGTGGCGCACCGCCGCGGTGTCAA
ACCGGAGGTAGTCGTACTTGGTGGTCAAGTTGGCAATGGCCTTGATGTCCATCAGCAACTCGTTG
TCGATGGTAAACCCCTTGGTCTTCATGAGCCGCGCGATCTCCTGG
Found at i:34083 original size:13 final size:13
Alignment explanation
Indices: 34067--34104 Score: 67
Period size: 13 Copynumber: 2.9 Consensus size: 13
34057 TTCCACCCAT
34067 CACATCCCCACAG
1 CACATCCCCACAG
*
34080 CACATCTCCACAG
1 CACATCCCCACAG
34093 CACATCCCCACA
1 CACATCCCCACA
34105 ATACCACCCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.32, C:0.53, G:0.05, T:0.11
Consensus pattern (13 bp):
CACATCCCCACAG
Left flanking sequence: Indices 33567 -- 34066
CCCCACCTTAGTGTCCCGTACAGTAACGTAAAGATCGACGATCGCCCAGTTAAACTACAACCTGG
GTGATGGTACGACAATGCAATCGAACACTTTGTTTCGGTGGACTTGCCATGAGACGATACCATGA
CACCACCCATTGAACTTAACCGTCACGATTGTTTCACTACCCATCACACCAAGCCAGCACACTTG
TCACCCATTACACTAAAGCATCTACCTGTTACACCACCTAGTACACTAAACCACCAACCTACTAC
ACTTTTACCCCCTTACGCTACTCCGTACTACTACTCCATGGTACGACCCCAGAATACTACCCCAT
AATACTACCCCATGATACTACCCCATAATACTACTCCATACGTTACCATAACCCATGATATTACC
CCAGTCGTTACCATGACATTACCCCATAATCCTACCCCATAATAACACCCCAATACTACCCCATA
ACACCACCCCATTACTACCCCACACTACCCGTACATTCCACCCAT
Right flanking sequence: Indices 34105 -- 34604
ATACCACCCTTACATTCCACCCAACCTCCGTACATTCCACCAACCCTCGTCTATGTCTATTATGT
CATGCTATTCAAAGTCTCGCTGGATGATGAGCGGCACCCGGAGCACCAACTTCTCCCCGTTGACC
CGGAACTTGAGCCGGATGTAGTACACCCGGGCAAACAAGCACGACTGGAAGTCCGGCACCAACTG
GGTGTCGCTGGGAAGCAGCGCCATGTCCACCGCCACCGAAAACGTCTTGTGGTGGGTGCGGCTCG
CCAGCTTCCACGGCACCAGCGCAATCGACAGCACCACCTCGCCGTCGTGGCGCACCGCCGCGGTG
TCAAACCGGAGGTAGTCGTACTTGGTGGTCAAGTTGGCAATGGCCTTGATGTCCATCAGCAACTC
GTTGTCGATGGTAAACCCCTTGGTCTTCATGAGCCGCGCGATCTCCTGGGCAAACCCCTGGAACT
TCTTGATCGTCAACATGTCAAAGTTGTCGGTGTTCTTGCCCTTGT
Found at i:37012 original size:14 final size:14
Alignment explanation
Indices: 36992--37035 Score: 70
Period size: 14 Copynumber: 3.1 Consensus size: 14
36982 AAACAGGACA
*
36992 CGACTACCAGTGAC
1 CGACTACCAGCGAC
*
37006 GGACTACCAGCGAC
1 CGACTACCAGCGAC
37020 CGACTACCAGCGAC
1 CGACTACCAGCGAC
37034 CG
1 CG
37036 TTCTGTTTGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.27, C:0.39, G:0.25, T:0.09
Consensus pattern (14 bp):
CGACTACCAGCGAC
Left flanking sequence: Indices 36492 -- 36991
GGGCTTTACTAGACAAACAATGGACAATGAGGTCACGTTCGCTGAGCCCCCGTGAGTCATTGGCC
CGCTGCTCGGGCCATGCACCATGCCAACGCCGCGATCATATAGACATTTACGACACGTGACCGCC
CGCCTGTGTCCACCACGGTTCAGCGGTGTGGAGTGTGGTGGTTGCCTGATTTCGGTGGCTGTAGT
CGCTTGGTGCTCCCGGCACCTTGCGGCGATGAGCCGCCTTGAGCGGGTTTATTGGGAGCTGCAAG
CGGTTCGCCAAGGTGCCCGGAACGTGGCTCCTAAGCGATCGCCGAGGTGTGGGCATGCGAGGGCA
GGCTGACCGAGGCGGGCTGAGGCTAGTTCGTGGCGAATTCGGGTGCTAGGCGGTGTTTCGGGTCT
CATGTGGGCACACGGAATACCGTGTCCGAGTTTCCCTTTTGGGACAAGGACCCTGGCAGACAGAA
TTTGAGTGTGTTTATGCCAGGGAGTGTATTGAGTCAAACAGGACA
Right flanking sequence: Indices 37036 -- 37535
TTCTGTTTGGCTTTGGCGTAAAACAGTAGATCGATGCTACTCAGGCAGTTCTTCCACCCTCCTGG
CCTTCCACCGTCCTGGCCTTCTTCCACACTCCTGCCCTTCTAGTCTCCACCCCTTGCGTCTACAA
GCTACCCCTACACCCACACCCACACCTCTGCCTATCCATACCGTTTATGCAATGCTATTCTATAA
CCTCTATATCTATTTACGTTGTTTCTCCACGTACACGGGCACCAGCACAAACGACGAGTCCCCGT
TGGCCAACTTGAGCACCACCCGAAGATAATACACCCGAGCCACGAGACACGCCTGGAAGCTGGGC
ACGAGCGTGATCTGCTCCAGCTGCTTGTCGTTGCCCTTGACGAAGCAGTCCGCCAAGTCCACCGT
CACGGCAAAGTCCTTGGTCTTGACATTGTCACCGTCCTCCCAGGGGATGGTGTTGAGATTAGCGT
GCACCCCGCGCGCGTTGGCCGACTGGGACCCCACCTGGACCCCCA
Found at i:37107 original size:16 final size:16
Alignment explanation
Indices: 37086--37121 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
37076 TCAGGCAGTT
37086 CTTCCACCCTCCTGGC
1 CTTCCACCCTCCTGGC
*
37102 CTTCCACCGTCCTGGC
1 CTTCCACCCTCCTGGC
37118 CTTC
1 CTTC
37122 TTCCACACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.06, C:0.53, G:0.14, T:0.28
Consensus pattern (16 bp):
CTTCCACCCTCCTGGC
Left flanking sequence: Indices 36586 -- 37085
CCGCGATCATATAGACATTTACGACACGTGACCGCCCGCCTGTGTCCACCACGGTTCAGCGGTGT
GGAGTGTGGTGGTTGCCTGATTTCGGTGGCTGTAGTCGCTTGGTGCTCCCGGCACCTTGCGGCGA
TGAGCCGCCTTGAGCGGGTTTATTGGGAGCTGCAAGCGGTTCGCCAAGGTGCCCGGAACGTGGCT
CCTAAGCGATCGCCGAGGTGTGGGCATGCGAGGGCAGGCTGACCGAGGCGGGCTGAGGCTAGTTC
GTGGCGAATTCGGGTGCTAGGCGGTGTTTCGGGTCTCATGTGGGCACACGGAATACCGTGTCCGA
GTTTCCCTTTTGGGACAAGGACCCTGGCAGACAGAATTTGAGTGTGTTTATGCCAGGGAGTGTAT
TGAGTCAAACAGGACACGACTACCAGTGACGGACTACCAGCGACCGACTACCAGCGACCGTTCTG
TTTGGCTTTGGCGTAAAACAGTAGATCGATGCTACTCAGGCAGTT
Right flanking sequence: Indices 37122 -- 37621
TTCCACACTCCTGCCCTTCTAGTCTCCACCCCTTGCGTCTACAAGCTACCCCTACACCCACACCC
ACACCTCTGCCTATCCATACCGTTTATGCAATGCTATTCTATAACCTCTATATCTATTTACGTTG
TTTCTCCACGTACACGGGCACCAGCACAAACGACGAGTCCCCGTTGGCCAACTTGAGCACCACCC
GAAGATAATACACCCGAGCCACGAGACACGCCTGGAAGCTGGGCACGAGCGTGATCTGCTCCAGC
TGCTTGTCGTTGCCCTTGACGAAGCAGTCCGCCAAGTCCACCGTCACGGCAAAGTCCTTGGTCTT
GACATTGTCACCGTCCTCCCAGGGGATGGTGTTGAGATTAGCGTGCACCCCGCGCGCGTTGGCCG
ACTGGGACCCCACCTGGACCCCCAGGTCGCGGATGGTGAGGATGGTCAACTTGGTGGTGGCGGTG
GCCACCAGCTTGATGTCGCGGTACAACAGCAGCTCCAACTGCACG
Found at i:37126 original size:19 final size:18
Alignment explanation
Indices: 37084--37141 Score: 59
Period size: 19 Copynumber: 3.2 Consensus size: 18
37074 ACTCAGGCAG
37084 TTCTTCCACCCTCCTGG-C
1 TTCTTCCA-CCTCCTGGCC
37102 --CTTCCACCGTCCTGGCC
1 TTCTTCCACC-TCCTGGCC
*
37119 TTCTTCCACACTCCTGCCC
1 TTCTTCCAC-CTCCTGGCC
37138 TTCT
1 TTCT
37142 AGTCTCCACC
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
15 2 0.06
16 12 0.35
17 1 0.03
19 18 0.53
20 1 0.03
ACGTcount: A:0.07, C:0.50, G:0.10, T:0.33
Consensus pattern (18 bp):
TTCTTCCACCTCCTGGCC
Left flanking sequence: Indices 36584 -- 37083
CGCCGCGATCATATAGACATTTACGACACGTGACCGCCCGCCTGTGTCCACCACGGTTCAGCGGT
GTGGAGTGTGGTGGTTGCCTGATTTCGGTGGCTGTAGTCGCTTGGTGCTCCCGGCACCTTGCGGC
GATGAGCCGCCTTGAGCGGGTTTATTGGGAGCTGCAAGCGGTTCGCCAAGGTGCCCGGAACGTGG
CTCCTAAGCGATCGCCGAGGTGTGGGCATGCGAGGGCAGGCTGACCGAGGCGGGCTGAGGCTAGT
TCGTGGCGAATTCGGGTGCTAGGCGGTGTTTCGGGTCTCATGTGGGCACACGGAATACCGTGTCC
GAGTTTCCCTTTTGGGACAAGGACCCTGGCAGACAGAATTTGAGTGTGTTTATGCCAGGGAGTGT
ATTGAGTCAAACAGGACACGACTACCAGTGACGGACTACCAGCGACCGACTACCAGCGACCGTTC
TGTTTGGCTTTGGCGTAAAACAGTAGATCGATGCTACTCAGGCAG
Right flanking sequence: Indices 37142 -- 37641
AGTCTCCACCCCTTGCGTCTACAAGCTACCCCTACACCCACACCCACACCTCTGCCTATCCATAC
CGTTTATGCAATGCTATTCTATAACCTCTATATCTATTTACGTTGTTTCTCCACGTACACGGGCA
CCAGCACAAACGACGAGTCCCCGTTGGCCAACTTGAGCACCACCCGAAGATAATACACCCGAGCC
ACGAGACACGCCTGGAAGCTGGGCACGAGCGTGATCTGCTCCAGCTGCTTGTCGTTGCCCTTGAC
GAAGCAGTCCGCCAAGTCCACCGTCACGGCAAAGTCCTTGGTCTTGACATTGTCACCGTCCTCCC
AGGGGATGGTGTTGAGATTAGCGTGCACCCCGCGCGCGTTGGCCGACTGGGACCCCACCTGGACC
CCCAGGTCGCGGATGGTGAGGATGGTCAACTTGGTGGTGGCGGTGGCCACCAGCTTGATGTCGCG
GTACAACAGCAGCTCCAACTGCACGGTGTCGTTGCCCAACGCCTT
Found at i:44270 original size:4 final size:4
Alignment explanation
Indices: 44263--44293 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
44253 GAGTACTAAC
44263 TATT TATT TATT TATT TA-T TATT TATT TATT
1 TATT TATT TATT TATT TATT TATT TATT TATT
44294 CACTGCTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
TATT
Left flanking sequence: Indices 43763 -- 44262
GGGCGCGCCCGACTTGAAGGAGCTCCCCGAGATCTTTGCCAACGCCGGGTGGGACAAGCTCAACA
ACACGGTGATTCTGACGTCGAACTGCGGCAACCCGTCGTTGCGGTTGTTTGGGTTCGGTCCCGTG
TCCGCCAACGGGTTTGGCATTGGCTACATCATCAAGGACGACCTGATCCTGATCTGCGTCAGCTC
GAAGCACCGTCAGACCCAGCGTTTCCTTGTCACGCTTGAGCTGTACCTCACCGAGATCCAGAACA
TGTGGCGCCAGGTGCGGCTCGAGGAGGATGCGATTGCGACCCAGGCGCAAATGCCGGCGCTTGCG
CGGGCCAAGACCATCAACCTCTCGACGTTGCTCGGTGGCTACGGCTACTTTGACATGGGAGACGA
CGACATGAAGCTGCGGGGCCACATTCCCGAGCCGCCGTTCTTGAACCGCCAGAACTCGTCGTTCT
CCAACCGCGAGATTGGCAAGAAGTTGCGTCTCTCGGAGTACTAAC
Right flanking sequence: Indices 44294 -- 44793
CACTGCTTTGTATCAGCCTTGCACCGGCCCTTGCATCGATCGATCTGACTCGGGCCGGGATCAGC
CTGCCCGGTCCAGGTGGCGCCATTGTCGAGTTGTGGGGAAGCGGGATCGACGGAGGAGTGACGGG
CGATAAGGATTAGACGAGGGCGATAATGTCGGGCGCCGCCTTTGTGGATGACGTGATTCGGGAGA
GGGCCGGGGATGGAAGGTTGAGCCGGACGAGCATGGCGGTGAGGTTGGGGGCGATAGAGGCTAGG
TTGTTGGTTGTGTGAATGAGTTACGAGGGCTTTGGATGATTTATTTGGGAGCTTGAGGATGTTTT
ATTGATGGCTAAAGGATAGCTTCATAATGGCATTTTGATGGCATTAGGACTAGTGGATGGCAGTG
CTCAGTAGGGAGAGTAGGGTGTAGTTCGTTGTAGTGACACAGAGACGAAGGAAGGGCTGACCTGG
TAAGATAGCACAGAAAGTATGGGTTGCTGGTGACAAAGCGAAGAG
Found at i:45907 original size:21 final size:21
Alignment explanation
Indices: 45883--45923 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
45873 CCCGGAGGCA
* *
45883 CCATCCCAGGCGCGGGCATCG
1 CCATCCCAGCCGCAGGCATCG
45904 CCATCCCAGCCGCAGGCATC
1 CCATCCCAGCCGCAGGCATC
45924 CCAGCCGCAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.17, C:0.46, G:0.27, T:0.10
Consensus pattern (21 bp):
CCATCCCAGCCGCAGGCATCG
Left flanking sequence: Indices 45383 -- 45882
GATATGAATCCCAATCAACTCAACGGAGAATCACAACAACTCACCAAGAAAGCGGTGGGGGGTCT
GGGGGGCGCCGCCTGCGGCCCCCCAGCTGTTACTTGTTCTTTGTACCGTGTCCCTAGTCTCTTAA
TACCGCCACACATTGGTTACCAATTGACCAAGCGCTTTGTGGTGATCTCTCATAACCGTATGATA
TCCACCCTACTCAAACCCGCTCCAACACTGAAACTACCACTCTCCACTCTACCACTTTACCCACC
CACCGTCTCCTCTACACACTTTTGTTACTTTCTCCGTTTGTTATTTTCTTTATTAGTATAGTACA
GGGGGTCAAAGATAAATAACGATGCAATCAGGGCGCTAGCCCATCTGGTTGAGCGCAGCCCGCAT
CTGCGCCATGTTGGTGGTTTTGTTTTTGTCGTGGCGCCCGGCCTGGGGGATGGCCTTCATCAACG
TCGAGTCACTGGGCACGCCCGGCGCCTTGGCAGCGCCCGGAGGCA
Right flanking sequence: Indices 45924 -- 46423
CCAGCCGCAGGCATCCCGGGCGCCCCCATGGGCGGGCCCGGGTGCGTGGGCGAGTACCGCTGCGG
CGGGTACCCGGGGTACTGGCCAAACTGCTGGTGGGTGGGCGACACGTGCGGCGGGGTCATGAAGT
ACCCGCCCTGCGGCATGGGCTGGCCCTGTGGCGGGTACCCGTACGGCGGGAACCCTGGTGGCTGC
TGGAAGTGCGGTGGCATTCCGTACTGCGGGTGCGGGTGGCCCGTCGGGTGAGGCTGGTGGCCCAG
TGGCTGGTGGCCCAGTGGCGGGTGCGGCTGGTGGCCCGGCTGGTGGCCTGGCTGCTGGTTGTAGT
AGTACTGCGGGCCGCCAAACCCGTACGAGAACTGCTGGCCCTTGGGTGGCGCGCCGTACTGGTGG
GTGCCCGGGGCCGCGCCGGGCTTCGGGAACGCGTTGTAGTTGCCCAGCGGCTTGCGCGGCTTCGG
TTGCCGCGGTGGCTTTGCCTGCTTGTCCTGTGGCAGCGTCTGGCG
Found at i:45925 original size:15 final size:15
Alignment explanation
Indices: 45905--45940 Score: 72
Period size: 15 Copynumber: 2.4 Consensus size: 15
45895 CGGGCATCGC
45905 CATCCCAGCCGCAGG
1 CATCCCAGCCGCAGG
45920 CATCCCAGCCGCAGG
1 CATCCCAGCCGCAGG
45935 CATCCC
1 CATCCC
45941 GGGCGCCCCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.19, C:0.50, G:0.22, T:0.08
Consensus pattern (15 bp):
CATCCCAGCCGCAGG
Left flanking sequence: Indices 45405 -- 45904
ACGGAGAATCACAACAACTCACCAAGAAAGCGGTGGGGGGTCTGGGGGGCGCCGCCTGCGGCCCC
CCAGCTGTTACTTGTTCTTTGTACCGTGTCCCTAGTCTCTTAATACCGCCACACATTGGTTACCA
ATTGACCAAGCGCTTTGTGGTGATCTCTCATAACCGTATGATATCCACCCTACTCAAACCCGCTC
CAACACTGAAACTACCACTCTCCACTCTACCACTTTACCCACCCACCGTCTCCTCTACACACTTT
TGTTACTTTCTCCGTTTGTTATTTTCTTTATTAGTATAGTACAGGGGGTCAAAGATAAATAACGA
TGCAATCAGGGCGCTAGCCCATCTGGTTGAGCGCAGCCCGCATCTGCGCCATGTTGGTGGTTTTG
TTTTTGTCGTGGCGCCCGGCCTGGGGGATGGCCTTCATCAACGTCGAGTCACTGGGCACGCCCGG
CGCCTTGGCAGCGCCCGGAGGCACCATCCCAGGCGCGGGCATCGC
Right flanking sequence: Indices 45941 -- 46440
GGGCGCCCCCATGGGCGGGCCCGGGTGCGTGGGCGAGTACCGCTGCGGCGGGTACCCGGGGTACT
GGCCAAACTGCTGGTGGGTGGGCGACACGTGCGGCGGGGTCATGAAGTACCCGCCCTGCGGCATG
GGCTGGCCCTGTGGCGGGTACCCGTACGGCGGGAACCCTGGTGGCTGCTGGAAGTGCGGTGGCAT
TCCGTACTGCGGGTGCGGGTGGCCCGTCGGGTGAGGCTGGTGGCCCAGTGGCTGGTGGCCCAGTG
GCGGGTGCGGCTGGTGGCCCGGCTGGTGGCCTGGCTGCTGGTTGTAGTAGTACTGCGGGCCGCCA
AACCCGTACGAGAACTGCTGGCCCTTGGGTGGCGCGCCGTACTGGTGGGTGCCCGGGGCCGCGCC
GGGCTTCGGGAACGCGTTGTAGTTGCCCAGCGGCTTGCGCGGCTTCGGTTGCCGCGGTGGCTTTG
CCTGCTTGTCCTGTGGCAGCGTCTGGCGCGGTGGCAGGAACTGTG
Found at i:46190 original size:15 final size:15
Alignment explanation
Indices: 46170--46207 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
46160 CGTCGGGTGA
46170 GGCTGGTGGCCCAGT
1 GGCTGGTGGCCCAGT
46185 GGCTGGTGGCCCAGT
1 GGCTGGTGGCCCAGT
*
46200 GGCGGGTG
1 GGCTGGTG
46208 CGGCTGGTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.05, C:0.24, G:0.53, T:0.18
Consensus pattern (15 bp):
GGCTGGTGGCCCAGT
Left flanking sequence: Indices 45670 -- 46169
CTTTCTCCGTTTGTTATTTTCTTTATTAGTATAGTACAGGGGGTCAAAGATAAATAACGATGCAA
TCAGGGCGCTAGCCCATCTGGTTGAGCGCAGCCCGCATCTGCGCCATGTTGGTGGTTTTGTTTTT
GTCGTGGCGCCCGGCCTGGGGGATGGCCTTCATCAACGTCGAGTCACTGGGCACGCCCGGCGCCT
TGGCAGCGCCCGGAGGCACCATCCCAGGCGCGGGCATCGCCATCCCAGCCGCAGGCATCCCAGCC
GCAGGCATCCCGGGCGCCCCCATGGGCGGGCCCGGGTGCGTGGGCGAGTACCGCTGCGGCGGGTA
CCCGGGGTACTGGCCAAACTGCTGGTGGGTGGGCGACACGTGCGGCGGGGTCATGAAGTACCCGC
CCTGCGGCATGGGCTGGCCCTGTGGCGGGTACCCGTACGGCGGGAACCCTGGTGGCTGCTGGAAG
TGCGGTGGCATTCCGTACTGCGGGTGCGGGTGGCCCGTCGGGTGA
Right flanking sequence: Indices 46208 -- 46707
CGGCTGGTGGCCCGGCTGGTGGCCTGGCTGCTGGTTGTAGTAGTACTGCGGGCCGCCAAACCCGT
ACGAGAACTGCTGGCCCTTGGGTGGCGCGCCGTACTGGTGGGTGCCCGGGGCCGCGCCGGGCTTC
GGGAACGCGTTGTAGTTGCCCAGCGGCTTGCGCGGCTTCGGTTGCCGCGGTGGCTTTGCCTGCTT
GTCCTGTGGCAGCGTCTGGCGCGGTGGCAGGAACTGTGGTGCTGGGATGCGCTCCACTTGCGGGA
TGCGGAGCGGCCGCTTCAGCTCCTTGCGTGGCTCCTCGCTCGGTTTGATGGGCGGTGTCGGTGGA
CGCAACGCCTCTTCGGGGAGCGGCGGCAACTCGTCCTTGTCCGCGATGTGTTTGCGGCGCGCCTT
GGCGTCGGCCTTGGCCTCTGCCTTCGCCTCTGCCTTGAGCTGGCGCAGCAGGCCTTCGCGCGGCT
CCTCGGGCGACCCGGGGGTGTTTTGCAGCAACTGGATGAACAGCT
Found at i:46225 original size:12 final size:12
Alignment explanation
Indices: 46208--46237 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
46198 GTGGCGGGTG
46208 CGGCTGGTGGCC
1 CGGCTGGTGGCC
46220 CGGCTGGTGGCC
1 CGGCTGGTGGCC
*
46232 TGGCTG
1 CGGCTG
46238 CTGGTTGTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.30, G:0.50, T:0.20
Consensus pattern (12 bp):
CGGCTGGTGGCC
Left flanking sequence: Indices 45708 -- 46207
GGGGGTCAAAGATAAATAACGATGCAATCAGGGCGCTAGCCCATCTGGTTGAGCGCAGCCCGCAT
CTGCGCCATGTTGGTGGTTTTGTTTTTGTCGTGGCGCCCGGCCTGGGGGATGGCCTTCATCAACG
TCGAGTCACTGGGCACGCCCGGCGCCTTGGCAGCGCCCGGAGGCACCATCCCAGGCGCGGGCATC
GCCATCCCAGCCGCAGGCATCCCAGCCGCAGGCATCCCGGGCGCCCCCATGGGCGGGCCCGGGTG
CGTGGGCGAGTACCGCTGCGGCGGGTACCCGGGGTACTGGCCAAACTGCTGGTGGGTGGGCGACA
CGTGCGGCGGGGTCATGAAGTACCCGCCCTGCGGCATGGGCTGGCCCTGTGGCGGGTACCCGTAC
GGCGGGAACCCTGGTGGCTGCTGGAAGTGCGGTGGCATTCCGTACTGCGGGTGCGGGTGGCCCGT
CGGGTGAGGCTGGTGGCCCAGTGGCTGGTGGCCCAGTGGCGGGTG
Right flanking sequence: Indices 46238 -- 46737
CTGGTTGTAGTAGTACTGCGGGCCGCCAAACCCGTACGAGAACTGCTGGCCCTTGGGTGGCGCGC
CGTACTGGTGGGTGCCCGGGGCCGCGCCGGGCTTCGGGAACGCGTTGTAGTTGCCCAGCGGCTTG
CGCGGCTTCGGTTGCCGCGGTGGCTTTGCCTGCTTGTCCTGTGGCAGCGTCTGGCGCGGTGGCAG
GAACTGTGGTGCTGGGATGCGCTCCACTTGCGGGATGCGGAGCGGCCGCTTCAGCTCCTTGCGTG
GCTCCTCGCTCGGTTTGATGGGCGGTGTCGGTGGACGCAACGCCTCTTCGGGGAGCGGCGGCAAC
TCGTCCTTGTCCGCGATGTGTTTGCGGCGCGCCTTGGCGTCGGCCTTGGCCTCTGCCTTCGCCTC
TGCCTTGAGCTGGCGCAGCAGGCCTTCGCGCGGCTCCTCGGGCGACCCGGGGGTGTTTTGCAGCA
ACTGGATGAACAGCTGGCGGTTGTGGGGCTGGGCCATCACCGCGG
Found at i:46620 original size:12 final size:12
Alignment explanation
Indices: 46593--46634 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
46583 TTTGCGGCGC
* *
46593 GCCTTGGCGTCG
1 GCCTTGGCCTCT
46605 GCCTTGGCCTCT
1 GCCTTGGCCTCT
*
46617 GCCTTCGCCTCT
1 GCCTTGGCCTCT
46629 GCCTTG
1 GCCTTG
46635 AGCTGGCGCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.00, C:0.40, G:0.29, T:0.31
Consensus pattern (12 bp):
GCCTTGGCCTCT
Left flanking sequence: Indices 46093 -- 46592
CGTACGGCGGGAACCCTGGTGGCTGCTGGAAGTGCGGTGGCATTCCGTACTGCGGGTGCGGGTGG
CCCGTCGGGTGAGGCTGGTGGCCCAGTGGCTGGTGGCCCAGTGGCGGGTGCGGCTGGTGGCCCGG
CTGGTGGCCTGGCTGCTGGTTGTAGTAGTACTGCGGGCCGCCAAACCCGTACGAGAACTGCTGGC
CCTTGGGTGGCGCGCCGTACTGGTGGGTGCCCGGGGCCGCGCCGGGCTTCGGGAACGCGTTGTAG
TTGCCCAGCGGCTTGCGCGGCTTCGGTTGCCGCGGTGGCTTTGCCTGCTTGTCCTGTGGCAGCGT
CTGGCGCGGTGGCAGGAACTGTGGTGCTGGGATGCGCTCCACTTGCGGGATGCGGAGCGGCCGCT
TCAGCTCCTTGCGTGGCTCCTCGCTCGGTTTGATGGGCGGTGTCGGTGGACGCAACGCCTCTTCG
GGGAGCGGCGGCAACTCGTCCTTGTCCGCGATGTGTTTGCGGCGC
Right flanking sequence: Indices 46635 -- 47134
AGCTGGCGCAGCAGGCCTTCGCGCGGCTCCTCGGGCGACCCGGGGGTGTTTTGCAGCAACTGGAT
GAACAGCTGGCGGTTGTGGGGCTGGGCCATCACCGCGGGGTCTGGCGAGAGCTCGCGCGGCAACC
GCTGCTTGCCCTTGTCCTTGGGCGTGCCGTCGGTGAAGCCCTGCGGCGGCGGCATGGGCAGGTGG
GGCATGAGGTAGGGCTGCGGCGGGTGTGCGTAGCCGTTGTCCATCACCGTGGGCGCCTGGTACGG
CGGGTACGCGTGCGGCAGCCGCTGGCGGTGCTGCTCCAACTCCTCCTCGATCTGGAGGTCGAGCT
CGAGGTTCTGCGGCGGCGGCCGGCGCTTCTTGCGGTCGGCGCGCTGCTTCTCCTCCACGTCGCGG
TCCATCAACTCGCGGATCTCCTCCACCAGCTTGATGGGCCGCAGGGTGTCCTCGCGGGGCCGCTC
GTCGCGGTCGTACGAGTCGAGCCGCTCCGGCGACGGCCGGCGAGG
Found at i:49985 original size:16 final size:16
Alignment explanation
Indices: 49964--50024 Score: 52
Period size: 16 Copynumber: 3.6 Consensus size: 16
49954 AGTGGTGGAG
*
49964 GTTACAG-GGTGGTAGT
1 GTTACAGAGGTAGT-GT
49980 GTTACAGAGGTAGTGT
1 GTTACAGAGGTAGTGT
*
49996 GTTACTGAGTAGTAGCGTGT
1 GTTACAGAG--GTA--GTGT
50016 GTTACAGAG
1 GTTACAGAG
50025 TGGTATTGGT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
16 17 0.46
17 5 0.14
18 3 0.08
20 12 0.32
ACGTcount: A:0.23, C:0.08, G:0.38, T:0.31
Consensus pattern (16 bp):
GTTACAGAGGTAGTGT
Left flanking sequence: Indices 49464 -- 49963
CGGGTGCGGTTCTATCGTTCGCTACGCCGTGCGTATTCCCCGTTTTCTGTCTGTCTCCATTCCCT
GTCTGCTGCGCCTTCGCGCACTAGACCCTGGCCCATCGGATCGCAGGCTAGCCCTCGCGTATCTG
ATGTGGGCTTCGATGGGTCAGGTGATGGAGTGTCACCGGTGACGGGCCCGGGGTGGTGGGTGTTT
GGGCGAGCGGTTTGAAACGTGGTTTGAAACGCGTGGGCGTGCTTGGGGTACGTCGGCCCACTGCT
TGTGAATAGTGGTGGGTTTTACTGGTAGTGGGTAGAGGGTATTATTGGTGGTGGGAACTACCGGT
AGTAGGCGGTAGTGGAGGTGGTGGTAGGTGGGGTGTGTATGCTGGGGGGCCGCAAGCGGCGCCCC
CCAGACCCCCCACCGCTTGTTCTGGGTGGAGGTAGTGGTGGTTGATGGTAGTGTGTGTGATAGGG
TGGAAGTAGTGTAACACAGTGGTAGAGTGTTACTGAGTGGTGGAG
Right flanking sequence: Indices 50025 -- 50524
TGGTATTGGTGGTAGTGGGTGTACTTCTAAGATTCCGGTCGCAATCGTTTCCGGGCGCAATCGTT
TCCGGGCGCATTTGTTTCCGGTGCATCGTTTCCGGTGCATTCGTTTTCGGGTGCATTCCGGTTGA
CTTTACCCGTGCCGCCACCTGCTTGAGACCACTTATTTTTTCCATTCTCAACCCACCTTCCACCA
CGTAAACTTCAACCGCCTACAAACCCTCCCCGTAAATCTCCACCACCACCCTACTCCTCTACCGA
TCTCTCAAACACGTTCTATTAACCGACCTATTTAATTAGGCTGTACCATCGCCATGTCCAACGCC
AAGCCCTCCAACTCCTCGGGACGCTGCATCGTCCCCATCGCTTGCATATTGCGCATATTGCCTCC
TTCCTGCGGCGCCGGCATCTCCGCCATGTTGCCGTGGGCCGCCTGCTGGTCGTTGACCATCACCG
GTGCTCGCGGGGCTTGCTCCATCGAGGGGATGGCCACGGGGGCCG
Found at i:50078 original size:16 final size:16
Alignment explanation
Indices: 50057--50135 Score: 92
Period size: 16 Copynumber: 5.1 Consensus size: 16
50047 ACTTCTAAGA
50057 TTCCGGTCGCAATCGT
1 TTCCGGTCGCAATCGT
*
50073 TTCCGGGCGCAATCGT
1 TTCCGGTCGCAATCGT
* * *
50089 TTCCGGGCGCATTTGT
1 TTCCGGTCGCAATCGT
50105 TTCCGGT-GC-ATCGT
1 TTCCGGTCGCAATCGT
*
50119 TTCCGGT-GCATTCGT
1 TTCCGGTCGCAATCGT
50134 TT
1 TT
50136 TCGGGTGCAT
Statistics
Matches: 55, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
14 12 0.22
15 8 0.15
16 35 0.64
ACGTcount: A:0.09, C:0.28, G:0.28, T:0.35
Consensus pattern (16 bp):
TTCCGGTCGCAATCGT
Left flanking sequence: Indices 49557 -- 50056
TGGCCCATCGGATCGCAGGCTAGCCCTCGCGTATCTGATGTGGGCTTCGATGGGTCAGGTGATGG
AGTGTCACCGGTGACGGGCCCGGGGTGGTGGGTGTTTGGGCGAGCGGTTTGAAACGTGGTTTGAA
ACGCGTGGGCGTGCTTGGGGTACGTCGGCCCACTGCTTGTGAATAGTGGTGGGTTTTACTGGTAG
TGGGTAGAGGGTATTATTGGTGGTGGGAACTACCGGTAGTAGGCGGTAGTGGAGGTGGTGGTAGG
TGGGGTGTGTATGCTGGGGGGCCGCAAGCGGCGCCCCCCAGACCCCCCACCGCTTGTTCTGGGTG
GAGGTAGTGGTGGTTGATGGTAGTGTGTGTGATAGGGTGGAAGTAGTGTAACACAGTGGTAGAGT
GTTACTGAGTGGTGGAGGTTACAGGGTGGTAGTGTTACAGAGGTAGTGTGTTACTGAGTAGTAGC
GTGTGTTACAGAGTGGTATTGGTGGTAGTGGGTGTACTTCTAAGA
Right flanking sequence: Indices 50136 -- 50635
TCGGGTGCATTCCGGTTGACTTTACCCGTGCCGCCACCTGCTTGAGACCACTTATTTTTTCCATT
CTCAACCCACCTTCCACCACGTAAACTTCAACCGCCTACAAACCCTCCCCGTAAATCTCCACCAC
CACCCTACTCCTCTACCGATCTCTCAAACACGTTCTATTAACCGACCTATTTAATTAGGCTGTAC
CATCGCCATGTCCAACGCCAAGCCCTCCAACTCCTCGGGACGCTGCATCGTCCCCATCGCTTGCA
TATTGCGCATATTGCCTCCTTCCTGCGGCGCCGGCATCTCCGCCATGTTGCCGTGGGCCGCCTGC
TGGTCGTTGACCATCACCGGTGCTCGCGGGGCTTGCTCCATCGAGGGGATGGCCACGGGGGCCGG
GTACTGCTGGGGGGCCGTGGGCACGTTCAACGTCGTAGGAATCGTCAGGGGCATCAGCGTCAAGT
TGCCCTGGTTGATGGCGGCAGAGATCTGGGTCACGTACAGCGCCT
Found at i:50142 original size:16 final size:16
Alignment explanation
Indices: 50069--50147 Score: 65
Period size: 16 Copynumber: 5.1 Consensus size: 16
50059 CCGGTCGCAA
* * *
50069 TCGTTTCCGGGCGCAA
1 TCGTTTTCGGGTGCAT
* *
50085 TCGTTTCCGGGCGCAT
1 TCGTTTTCGGGTGCAT
* *
50101 TTG-TTTCCGGTGCA-
1 TCGTTTTCGGGTGCAT
*
50115 TCG-TTTCCGGTGCAT
1 TCGTTTTCGGGTGCAT
50130 TCGTTTTCGGGTGCAT
1 TCGTTTTCGGGTGCAT
50146 TC
1 TC
50148 CGGTTGACTT
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
14 13 0.24
15 11 0.20
16 30 0.56
ACGTcount: A:0.08, C:0.27, G:0.29, T:0.37
Consensus pattern (16 bp):
TCGTTTTCGGGTGCAT
Left flanking sequence: Indices 49569 -- 50068
TCGCAGGCTAGCCCTCGCGTATCTGATGTGGGCTTCGATGGGTCAGGTGATGGAGTGTCACCGGT
GACGGGCCCGGGGTGGTGGGTGTTTGGGCGAGCGGTTTGAAACGTGGTTTGAAACGCGTGGGCGT
GCTTGGGGTACGTCGGCCCACTGCTTGTGAATAGTGGTGGGTTTTACTGGTAGTGGGTAGAGGGT
ATTATTGGTGGTGGGAACTACCGGTAGTAGGCGGTAGTGGAGGTGGTGGTAGGTGGGGTGTGTAT
GCTGGGGGGCCGCAAGCGGCGCCCCCCAGACCCCCCACCGCTTGTTCTGGGTGGAGGTAGTGGTG
GTTGATGGTAGTGTGTGTGATAGGGTGGAAGTAGTGTAACACAGTGGTAGAGTGTTACTGAGTGG
TGGAGGTTACAGGGTGGTAGTGTTACAGAGGTAGTGTGTTACTGAGTAGTAGCGTGTGTTACAGA
GTGGTATTGGTGGTAGTGGGTGTACTTCTAAGATTCCGGTCGCAA
Right flanking sequence: Indices 50148 -- 50647
CGGTTGACTTTACCCGTGCCGCCACCTGCTTGAGACCACTTATTTTTTCCATTCTCAACCCACCT
TCCACCACGTAAACTTCAACCGCCTACAAACCCTCCCCGTAAATCTCCACCACCACCCTACTCCT
CTACCGATCTCTCAAACACGTTCTATTAACCGACCTATTTAATTAGGCTGTACCATCGCCATGTC
CAACGCCAAGCCCTCCAACTCCTCGGGACGCTGCATCGTCCCCATCGCTTGCATATTGCGCATAT
TGCCTCCTTCCTGCGGCGCCGGCATCTCCGCCATGTTGCCGTGGGCCGCCTGCTGGTCGTTGACC
ATCACCGGTGCTCGCGGGGCTTGCTCCATCGAGGGGATGGCCACGGGGGCCGGGTACTGCTGGGG
GGCCGTGGGCACGTTCAACGTCGTAGGAATCGTCAGGGGCATCAGCGTCAAGTTGCCCTGGTTGA
TGGCGGCAGAGATCTGGGTCACGTACAGCGCCTGGTTGAGCAACT
Found at i:50143 original size:30 final size:30
Alignment explanation
Indices: 50057--50145 Score: 90
Period size: 30 Copynumber: 2.9 Consensus size: 30
50047 ACTTCTAAGA
* * *
50057 TTCCGGTCGCAATCGTTTCCGGGCGCAATCGT
1 TTCCGGT-GCATTCGTTTTCGGGTGC-ATCGT
* * *
50089 TTCCGGGCGCATTTG-TTTCCGGTGCATCGT
1 TTCC-GGTGCATTCGTTTTCGGGTGCATCGT
50119 TTCCGGTGCATTCGTTTTCGGGTGCAT
1 TTCCGGTGCATTCGTTTTCGGGTGCAT
50146 TCCGGTTGAC
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
29 8 0.17
30 20 0.43
31 7 0.15
32 9 0.20
33 2 0.04
ACGTcount: A:0.09, C:0.27, G:0.29, T:0.35
Consensus pattern (30 bp):
TTCCGGTGCATTCGTTTTCGGGTGCATCGT
Left flanking sequence: Indices 49557 -- 50056
TGGCCCATCGGATCGCAGGCTAGCCCTCGCGTATCTGATGTGGGCTTCGATGGGTCAGGTGATGG
AGTGTCACCGGTGACGGGCCCGGGGTGGTGGGTGTTTGGGCGAGCGGTTTGAAACGTGGTTTGAA
ACGCGTGGGCGTGCTTGGGGTACGTCGGCCCACTGCTTGTGAATAGTGGTGGGTTTTACTGGTAG
TGGGTAGAGGGTATTATTGGTGGTGGGAACTACCGGTAGTAGGCGGTAGTGGAGGTGGTGGTAGG
TGGGGTGTGTATGCTGGGGGGCCGCAAGCGGCGCCCCCCAGACCCCCCACCGCTTGTTCTGGGTG
GAGGTAGTGGTGGTTGATGGTAGTGTGTGTGATAGGGTGGAAGTAGTGTAACACAGTGGTAGAGT
GTTACTGAGTGGTGGAGGTTACAGGGTGGTAGTGTTACAGAGGTAGTGTGTTACTGAGTAGTAGC
GTGTGTTACAGAGTGGTATTGGTGGTAGTGGGTGTACTTCTAAGA
Right flanking sequence: Indices 50146 -- 50645
TCCGGTTGACTTTACCCGTGCCGCCACCTGCTTGAGACCACTTATTTTTTCCATTCTCAACCCAC
CTTCCACCACGTAAACTTCAACCGCCTACAAACCCTCCCCGTAAATCTCCACCACCACCCTACTC
CTCTACCGATCTCTCAAACACGTTCTATTAACCGACCTATTTAATTAGGCTGTACCATCGCCATG
TCCAACGCCAAGCCCTCCAACTCCTCGGGACGCTGCATCGTCCCCATCGCTTGCATATTGCGCAT
ATTGCCTCCTTCCTGCGGCGCCGGCATCTCCGCCATGTTGCCGTGGGCCGCCTGCTGGTCGTTGA
CCATCACCGGTGCTCGCGGGGCTTGCTCCATCGAGGGGATGGCCACGGGGGCCGGGTACTGCTGG
GGGGCCGTGGGCACGTTCAACGTCGTAGGAATCGTCAGGGGCATCAGCGTCAAGTTGCCCTGGTT
GATGGCGGCAGAGATCTGGGTCACGTACAGCGCCTGGTTGAGCAA
Found at i:50146 original size:45 final size:48
Alignment explanation
Indices: 50057--50146 Score: 123
Period size: 45 Copynumber: 1.9 Consensus size: 48
50047 ACTTCTAAGA
50057 TTCCGGTCGCAATCGTTTCCGGGCGCAATCGTTTCCGGGCGCATTTGT
1 TTCCGGTCGCAATCGTTTCCGGGCGCAATCGTTTCCGGGCGCATTTGT
* * * *
50105 TTCCGGT-GC-ATCGTTTCC-GGTGCATTCGTTTTCGGGTGCATT
1 TTCCGGTCGCAATCGTTTCCGGGCGCAATCGTTTCCGGGCGCATT
50147 CCGGTTGACT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
45 20 0.53
46 9 0.24
47 2 0.05
48 7 0.18
ACGTcount: A:0.09, C:0.27, G:0.29, T:0.36
Consensus pattern (48 bp):
TTCCGGTCGCAATCGTTTCCGGGCGCAATCGTTTCCGGGCGCATTTGT
Left flanking sequence: Indices 49557 -- 50056
TGGCCCATCGGATCGCAGGCTAGCCCTCGCGTATCTGATGTGGGCTTCGATGGGTCAGGTGATGG
AGTGTCACCGGTGACGGGCCCGGGGTGGTGGGTGTTTGGGCGAGCGGTTTGAAACGTGGTTTGAA
ACGCGTGGGCGTGCTTGGGGTACGTCGGCCCACTGCTTGTGAATAGTGGTGGGTTTTACTGGTAG
TGGGTAGAGGGTATTATTGGTGGTGGGAACTACCGGTAGTAGGCGGTAGTGGAGGTGGTGGTAGG
TGGGGTGTGTATGCTGGGGGGCCGCAAGCGGCGCCCCCCAGACCCCCCACCGCTTGTTCTGGGTG
GAGGTAGTGGTGGTTGATGGTAGTGTGTGTGATAGGGTGGAAGTAGTGTAACACAGTGGTAGAGT
GTTACTGAGTGGTGGAGGTTACAGGGTGGTAGTGTTACAGAGGTAGTGTGTTACTGAGTAGTAGC
GTGTGTTACAGAGTGGTATTGGTGGTAGTGGGTGTACTTCTAAGA
Right flanking sequence: Indices 50147 -- 50646
CCGGTTGACTTTACCCGTGCCGCCACCTGCTTGAGACCACTTATTTTTTCCATTCTCAACCCACC
TTCCACCACGTAAACTTCAACCGCCTACAAACCCTCCCCGTAAATCTCCACCACCACCCTACTCC
TCTACCGATCTCTCAAACACGTTCTATTAACCGACCTATTTAATTAGGCTGTACCATCGCCATGT
CCAACGCCAAGCCCTCCAACTCCTCGGGACGCTGCATCGTCCCCATCGCTTGCATATTGCGCATA
TTGCCTCCTTCCTGCGGCGCCGGCATCTCCGCCATGTTGCCGTGGGCCGCCTGCTGGTCGTTGAC
CATCACCGGTGCTCGCGGGGCTTGCTCCATCGAGGGGATGGCCACGGGGGCCGGGTACTGCTGGG
GGGCCGTGGGCACGTTCAACGTCGTAGGAATCGTCAGGGGCATCAGCGTCAAGTTGCCCTGGTTG
ATGGCGGCAGAGATCTGGGTCACGTACAGCGCCTGGTTGAGCAAC
Found at i:52809 original size:7 final size:7
Alignment explanation
Indices: 52797--52853 Score: 78
Period size: 7 Copynumber: 8.0 Consensus size: 7
52787 CACACACATC
52797 CATACCT
1 CATACCT
52804 CATACCT
1 CATACCT
52811 CATACCT
1 CATACCT
52818 CATACCT
1 CATACCT
* *
52825 CTTGCCT
1 CATACCT
*
52832 CATACAT
1 CATACCT
52839 CCATACCT
1 -CATACCT
52847 CATACCT
1 CATACCT
52854 TTATACCTTC
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
7 37 0.86
8 6 0.14
ACGTcount: A:0.26, C:0.42, G:0.02, T:0.30
Consensus pattern (7 bp):
CATACCT
Left flanking sequence: Indices 52297 -- 52796
CCTGTCAACCGTGAATGGATTAGTCATGGGGCCAACTGGACCTTTGCGGCCGTAAACCGCTACTA
ATCGGGTAGGCGTACAAAACGGAGATCAAGGGGTGCTGTACGGAAATACGGGGTGTCTGGGGAGA
GTGTATGGAACCGGTGCAACGCACTAATACGAGACACAGCATGGTGTCAAGAGGCGGGGAATCGG
AGGGTGGGGCAGAAGATGGACTGGGTGTGATAACTACAGATGGAGTACACGGTCACAGGGTGAAA
CTGGATAGACACGACCACGACTAAAGGGGTCAAAAACAGGTAGAGAACGTACCCGTAAAATCTGA
TCCATTCCGTACTCTAACATGCTGATCGTACTTGACTCCACACCACCATACCTTTAACTCCACCG
TGTAATCTCTAACTAGTCATCGTGCCGTCATCTCGGTCAGATTTTAGGGGGGTGTGTCTTAATGA
TTCACGTCTCAAATCTCTAACATACCGATCATACTCACACACATC
Right flanking sequence: Indices 52854 -- 53353
TTATACCTTCCTCTATACCTCTTTCACTCCCTGTGTTGACTCAAAACCACCCAACTGACCTACTG
AACACGCTTCCCACCATACCATACTCCATACCTCTAACTCCACCTCACAACTTCTACGGCTCTCA
CCTTTAACCATTACCAATGCTCCAGCCCCACTTCGATCCTCCAGCCACCTCGTTCTTACCGTCTC
TACACTCTTCCTACTGTCCTCTACCTTCACTTCCTGTATTCCTACCTACCGGTGGTCCTTGGCCA
ACTCCGGGTTCTTCTTGATCTCCTCCTCAGCCTCCTGGGCCGGCAGCTTGTCGACAGGCTGCGCC
TTGGGCGGTTTGTTCTTGTCGATCGGCTTGACGGGCTTGGGCATCTGCGGCTCGCGGTCGGAGGG
AATCTTGCGCAGCCACCCCGTCTTCAACTTGTCGCCCATGTCAAACGTCTTGAACGGGTGTGCCT
CGGTGTTAAACACGTACTGGTCGAGCGGGAACATGTTGGTGTCGT
Found at i:52823 original size:21 final size:22
Alignment explanation
Indices: 52792--52853 Score: 90
Period size: 21 Copynumber: 2.9 Consensus size: 22
52782 ATACTCACAC
52792 ACATCCATACCTCATACCTCAT
1 ACATCCATACCTCATACCTCAT
* * *
52814 ACCT-CATACCTCTTGCCTCAT
1 ACATCCATACCTCATACCTCAT
52835 ACATCCATACCTCATACCT
1 ACATCCATACCTCATACCT
52854 TTATACCTTC
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
21 18 0.55
22 15 0.45
ACGTcount: A:0.27, C:0.42, G:0.02, T:0.29
Consensus pattern (22 bp):
ACATCCATACCTCATACCTCAT
Left flanking sequence: Indices 52292 -- 52791
GCGGGCCTGTCAACCGTGAATGGATTAGTCATGGGGCCAACTGGACCTTTGCGGCCGTAAACCGC
TACTAATCGGGTAGGCGTACAAAACGGAGATCAAGGGGTGCTGTACGGAAATACGGGGTGTCTGG
GGAGAGTGTATGGAACCGGTGCAACGCACTAATACGAGACACAGCATGGTGTCAAGAGGCGGGGA
ATCGGAGGGTGGGGCAGAAGATGGACTGGGTGTGATAACTACAGATGGAGTACACGGTCACAGGG
TGAAACTGGATAGACACGACCACGACTAAAGGGGTCAAAAACAGGTAGAGAACGTACCCGTAAAA
TCTGATCCATTCCGTACTCTAACATGCTGATCGTACTTGACTCCACACCACCATACCTTTAACTC
CACCGTGTAATCTCTAACTAGTCATCGTGCCGTCATCTCGGTCAGATTTTAGGGGGGTGTGTCTT
AATGATTCACGTCTCAAATCTCTAACATACCGATCATACTCACAC
Right flanking sequence: Indices 52854 -- 53353
TTATACCTTCCTCTATACCTCTTTCACTCCCTGTGTTGACTCAAAACCACCCAACTGACCTACTG
AACACGCTTCCCACCATACCATACTCCATACCTCTAACTCCACCTCACAACTTCTACGGCTCTCA
CCTTTAACCATTACCAATGCTCCAGCCCCACTTCGATCCTCCAGCCACCTCGTTCTTACCGTCTC
TACACTCTTCCTACTGTCCTCTACCTTCACTTCCTGTATTCCTACCTACCGGTGGTCCTTGGCCA
ACTCCGGGTTCTTCTTGATCTCCTCCTCAGCCTCCTGGGCCGGCAGCTTGTCGACAGGCTGCGCC
TTGGGCGGTTTGTTCTTGTCGATCGGCTTGACGGGCTTGGGCATCTGCGGCTCGCGGTCGGAGGG
AATCTTGCGCAGCCACCCCGTCTTCAACTTGTCGCCCATGTCAAACGTCTTGAACGGGTGTGCCT
CGGTGTTAAACACGTACTGGTCGAGCGGGAACATGTTGGTGTCGT
Found at i:54992 original size:11 final size:11
Alignment explanation
Indices: 54978--55006 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
54968 AAAAGTAGGT
54978 GGCGAGCGGGC
1 GGCGAGCGGGC
54989 GGCGAGCGGGC
1 GGCGAGCGGGC
55000 GGCGAGC
1 GGCGAGC
55007 TGGGACGGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.10, C:0.28, G:0.62, T:0.00
Consensus pattern (11 bp):
GGCGAGCGGGC
Left flanking sequence: Indices 54478 -- 54977
TCACGTACCCACTTGCGAGCACGCGCCACCTCTTCGTCGGCGCCCATGATCATCAACGTGTCCAA
CAGGTCCACCACCATCCACCCCAACGGCTTCTGGCCCATGTTCTTGCCGGTTTCCGCCACGGGGT
GGAACTCGTCGTACCCGTACCCGTGGTTCTCGTAGTGGTGCCACAGGTCCAACATCGCCTGGCGG
ATCTGCAGCTGGCGGGCCGCCAGCAGCGACGTGCCCCACTGCCCGTGGGCGAGGAACTGGTAGCC
GTACCACAACACGAGCAGGCCAACAAACGCCTTAAATAACATTTTGAGGGTGTTTCTCCGCAGTC
GCAGCGCCAGCGGTTTGTCTTTGTACAACGGAAGCTCCCCCTTTTTGGCCTTCCACTTGTTGGTG
TTTGGAAGATAGCCCATAGACAGTAGCGGTCAGTGGTCGCGGCTCGATTTCGCGCCGACGTGGTA
GGGATTCCATGCAGGGCTGCGAACCGCCAGGGGTGAAAAGTAGGT
Right flanking sequence: Indices 55007 -- 55506
TGGGACGGGTGCAGACGCGGTGTGGAGGAGCTGGATCGGGGCCTGCTCCGCGGTTTGTTCCACCT
GCCGTGCTCGCGTTTGTGTTTCCCCTTTGGGACGTGCTGTGGCTCGACGCACCATGACGACGGAG
CCAGGAGGCTATGATTGTACGATTCTTGCGGAGACACAAAGGTAAATTCCCTTTTGAGCTTCGGC
CGACGCTGTCCCTTTTCCGAACGTGGTTAATTCTGGGCGTGACCGGGGGACAGACACGAGCGTGT
GAAGGAGTTTACGGAGGGGGCTTAGGCTCCGCTGGGGTGTCTAGGCACTGGCTAGGGGACAAAGG
AGTGTAGAGGGGGGTGGCGGGAGCCAATCACGTAGAACACCACCACGGGCTCCGCGGCAACTTCA
AGCGGTGCATGTGGCTCGTTTCATGTCAACCGCTGACACCGTTGGGAGTGTCACGATGCATCGCT
ACGATCACCGATCCATCGGTTATGTCCGGCTAAAGTCCGCAGTGC
Found at i:62191 original size:11 final size:11
Alignment explanation
Indices: 62175--62221 Score: 85
Period size: 11 Copynumber: 4.3 Consensus size: 11
62165 CAGCTAACCA
62175 CACCGCCCACT
1 CACCGCCCACT
62186 CACCGCCCACT
1 CACCGCCCACT
62197 CACCGCCCACT
1 CACCGCCCACT
*
62208 CACCGCCTACT
1 CACCGCCCACT
62219 CAC
1 CAC
62222 TATAATGCCA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
11 35 1.00
ACGTcount: A:0.19, C:0.62, G:0.09, T:0.11
Consensus pattern (11 bp):
CACCGCCCACT
Left flanking sequence: Indices 61675 -- 62174
GAGCCCCAAAATGTTGGTGTAAAACAGTTTTGCCTGGTCTCTGAGGTCACGGTCGTGCGCGTGCA
CGGTGTAGCACGGCGCCCCGTTGACAATGGGCATTGGCATCCTGGCAGTGGTAGCAAACGTAGTG
CGGTAGTCCCGGTTTAAATGAAATTGCCCCTCCGGAATACAACCGTGCGATCTGCACCTCTAGGC
AGGGCGCGAAGAACGCGATCATCCGATCCGGGTGGGACGGGGGTGCGAGCACCGAGGGGCCACCA
GGGGCGGGATGGGCATTGTGGGGCTGTTCTGGGTGTAGTGGGTGGTGTAGAGTGGTTGTCTAGAG
CGGTGGTGGGCGCGCTGTGCCAAGAAACGGGCCGCTAGGTGCACCTGTCACGGTGCGAGTATCGG
CTCGGGAGCAGGGCCAACCGGTTTGTGCCACGCCCGCACGAGGGCTTTACACTGGTAGAACAATG
GTAGAACAACACTTGGTAGAACACCTAACCTTCTACAGCTAACCA
Right flanking sequence: Indices 62222 -- 62721
TATAATGCCACTACCCTAACCCGTACTACTGTTCTTCCCCACGTACAAAGCAGCCCCATGGACGG
CAGTGGTGCGTCCACCCGCAACCACTCACCCACCACCCACCCACCGCACACCCACCCCATTGACC
CGCCACACCGTCCCCCAGCCCGTGGCCACCACCCCCTCCCGTCCTCCTCTCCCACACCCGTGCTG
CACACACGTGACCCTAAAATTTTTCAACATCACAACTCGCACAAATTCCCTCCCCAAAGCTATCC
TAGCCATGTCCCAACAAGCGCCCGTGCCCCTCCCCGACTTGACCAAGATGGCCATCCCCACCTTG
CCTCAGGTTACCCCCGAGGCACCCAAGTCCAACGGCATCTGGTCGCTGAACCCGGTGTTCTCGTA
CATCAACGACGTCTACACCACGTTGGCGGAGCACCGCCAGCTGTTGGGGTTGATCAACCCGGGCA
CCATCGAGAACTTGAACAAGGAGGTCACCCGTGACGTGTTCTTGA
Found at i:68284 original size:25 final size:25
Alignment explanation
Indices: 68237--68339 Score: 65
Period size: 24 Copynumber: 4.2 Consensus size: 25
68227 CACCAGAACC
*
68237 ACACCACCACTACAACCACAACAAA
1 ACACCACCACTACAAACACAACAAA
*
68262 ACACCAGCA-TACAAACACAAACACAA
1 ACACCACCACTACAAACAC-AACA-AA
* * * *
68288 GC-CCAACAAC-ACCAACACAACACA
1 ACACC-ACCACTACAAACACAACAAA
*
68312 ACA-CACCAAC-ACCAACACAAC-AA
1 ACACCACC-ACTACAAACACAACAAA
68335 ACACC
1 ACACC
68340 CACACCATGC
Statistics
Matches: 61, Mismatches: 10, Indels: 15
0.71 0.12 0.17
Matches are distributed among these distances:
23 6 0.10
24 25 0.41
25 18 0.30
26 12 0.20
ACGTcount: A:0.53, C:0.43, G:0.02, T:0.02
Consensus pattern (25 bp):
ACACCACCACTACAAACACAACAAA
Left flanking sequence: Indices 67737 -- 68236
GGTGGTTTAGTCACTGGTGGATGAGTTGGGTGGATGACTGTAGAGGTTATGCAGGTAATTTGCAA
CAATTGTGTAGAATACATGGAAAATGTGGAAAGTAGCAGTATGCGATTTTGGTTGTGATGGTTTT
AGCTCCTCTTTGGAAAATCACGTCTCTGGTTCTCATCACTGGTTTACGGACCTTATTTGTACCTG
ACTGTGTCTCTTTTCTTGGTCCTTCTACGTGGCTTATCGTGTCGCGCGACAGATCAGTGCAGATC
CGATACCACCACACCACCAATAAGTCAATTGCACCGACTGTACACATCTCTCAGTCTATAATCAT
TGTTATTTACCTATTATTTACCTCTATAAATTCCCAACCATCCCCAACTTCTTCCTTCGATCCCA
CACCATCACACCACCCTCCATTCGTCTCACGCTTCCCCTCTTTTCGCACCGCCACTTTTCTCTAA
CGTTCCACCGATAGCCAAAACCACTACAAACACATCACCAGAACC
Right flanking sequence: Indices 68340 -- 68839
CACACCATGCTCATTTTCTGCCTCCTCGCGGTCGCCCACTGCTTCGAGGCGGTCCCGCTCTTGCT
CGCATCGCACCGGCTCGTCCCGGACCTCGCGGCCGACCTCAAGGGGTCCTGGCACGACCCGTACC
CGGTGGAGGTGGCCACCAACATGGTCAAACGCGCCATCACCCCGTGTCTGCTGGACGAGTACGTC
ATCGTCAACATCCCGGGCCTCACCAACGCCGACCTCACCGACGACCTGCCGTGGGACCACACGCG
CCGCTACCTCCACATGGCACTGACGGTGGTGGCCGCCCCCTGGGTCGAGGCACCGCTCGACCTCG
ATTTCCTCGAGCAATACGTCATCGAGCGGTGCGACGCCGAAACCATCCCCGTGGTCAACGGCCGC
GACGAGGAGGTGTACCACTACAAGGACACGCGCACCCGGGTGATCCGCATCGACTACGAGGAGCT
CGACATCAACCCGCAGCAGCGCCGCCGCCAGCTCGCCGCCGCCGA
Found at i:68310 original size:5 final size:5
Alignment explanation
Indices: 68293--68338 Score: 53
Period size: 5 Copynumber: 9.4 Consensus size: 5
68283 CACAAGCCCA
68293 ACAAC ACCAAC ACAAC ACAAC AC-AC -CAAC ACCAAC ACAAC A-AAC AC
1 ACAAC A-CAAC ACAAC ACAAC ACAAC ACAAC A-CAAC ACAAC ACAAC AC
68339 CCACACCATG
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
3 1 0.03
4 8 0.22
5 17 0.47
6 10 0.28
ACGTcount: A:0.57, C:0.43, G:0.00, T:0.00
Consensus pattern (5 bp):
ACAAC
Left flanking sequence: Indices 67793 -- 68292
AATTTGCAACAATTGTGTAGAATACATGGAAAATGTGGAAAGTAGCAGTATGCGATTTTGGTTGT
GATGGTTTTAGCTCCTCTTTGGAAAATCACGTCTCTGGTTCTCATCACTGGTTTACGGACCTTAT
TTGTACCTGACTGTGTCTCTTTTCTTGGTCCTTCTACGTGGCTTATCGTGTCGCGCGACAGATCA
GTGCAGATCCGATACCACCACACCACCAATAAGTCAATTGCACCGACTGTACACATCTCTCAGTC
TATAATCATTGTTATTTACCTATTATTTACCTCTATAAATTCCCAACCATCCCCAACTTCTTCCT
TCGATCCCACACCATCACACCACCCTCCATTCGTCTCACGCTTCCCCTCTTTTCGCACCGCCACT
TTTCTCTAACGTTCCACCGATAGCCAAAACCACTACAAACACATCACCAGAACCACACCACCACT
ACAACCACAACAAAACACCAGCATACAAACACAAACACAAGCCCA
Right flanking sequence: Indices 68339 -- 68838
CCACACCATGCTCATTTTCTGCCTCCTCGCGGTCGCCCACTGCTTCGAGGCGGTCCCGCTCTTGC
TCGCATCGCACCGGCTCGTCCCGGACCTCGCGGCCGACCTCAAGGGGTCCTGGCACGACCCGTAC
CCGGTGGAGGTGGCCACCAACATGGTCAAACGCGCCATCACCCCGTGTCTGCTGGACGAGTACGT
CATCGTCAACATCCCGGGCCTCACCAACGCCGACCTCACCGACGACCTGCCGTGGGACCACACGC
GCCGCTACCTCCACATGGCACTGACGGTGGTGGCCGCCCCCTGGGTCGAGGCACCGCTCGACCTC
GATTTCCTCGAGCAATACGTCATCGAGCGGTGCGACGCCGAAACCATCCCCGTGGTCAACGGCCG
CGACGAGGAGGTGTACCACTACAAGGACACGCGCACCCGGGTGATCCGCATCGACTACGAGGAGC
TCGACATCAACCCGCAGCAGCGCCGCCGCCAGCTCGCCGCCGCCG
Found at i:68327 original size:19 final size:18
Alignment explanation
Indices: 68272--68333 Score: 72
Period size: 19 Copynumber: 3.3 Consensus size: 18
68262 ACACCAGCAT
*
68272 ACAA-ACACAAACACAAGC
1 ACAACACACCAACACAA-C
*
68290 CCAACAACACCAACACAAC
1 ACAAC-ACACCAACACAAC
68309 ACAACACACCAACACCAAC
1 ACAACACACCAACA-CAAC
68328 ACAACA
1 ACAACA
68334 AACACCCACA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
18 12 0.32
19 15 0.39
20 11 0.29
ACGTcount: A:0.56, C:0.42, G:0.02, T:0.00
Consensus pattern (18 bp):
ACAACACACCAACACAAC
Left flanking sequence: Indices 67772 -- 68271
GACTGTAGAGGTTATGCAGGTAATTTGCAACAATTGTGTAGAATACATGGAAAATGTGGAAAGTA
GCAGTATGCGATTTTGGTTGTGATGGTTTTAGCTCCTCTTTGGAAAATCACGTCTCTGGTTCTCA
TCACTGGTTTACGGACCTTATTTGTACCTGACTGTGTCTCTTTTCTTGGTCCTTCTACGTGGCTT
ATCGTGTCGCGCGACAGATCAGTGCAGATCCGATACCACCACACCACCAATAAGTCAATTGCACC
GACTGTACACATCTCTCAGTCTATAATCATTGTTATTTACCTATTATTTACCTCTATAAATTCCC
AACCATCCCCAACTTCTTCCTTCGATCCCACACCATCACACCACCCTCCATTCGTCTCACGCTTC
CCCTCTTTTCGCACCGCCACTTTTCTCTAACGTTCCACCGATAGCCAAAACCACTACAAACACAT
CACCAGAACCACACCACCACTACAACCACAACAAAACACCAGCAT
Right flanking sequence: Indices 68334 -- 68833
AACACCCACACCATGCTCATTTTCTGCCTCCTCGCGGTCGCCCACTGCTTCGAGGCGGTCCCGCT
CTTGCTCGCATCGCACCGGCTCGTCCCGGACCTCGCGGCCGACCTCAAGGGGTCCTGGCACGACC
CGTACCCGGTGGAGGTGGCCACCAACATGGTCAAACGCGCCATCACCCCGTGTCTGCTGGACGAG
TACGTCATCGTCAACATCCCGGGCCTCACCAACGCCGACCTCACCGACGACCTGCCGTGGGACCA
CACGCGCCGCTACCTCCACATGGCACTGACGGTGGTGGCCGCCCCCTGGGTCGAGGCACCGCTCG
ACCTCGATTTCCTCGAGCAATACGTCATCGAGCGGTGCGACGCCGAAACCATCCCCGTGGTCAAC
GGCCGCGACGAGGAGGTGTACCACTACAAGGACACGCGCACCCGGGTGATCCGCATCGACTACGA
GGAGCTCGACATCAACCCGCAGCAGCGCCGCCGCCAGCTCGCCGC
Found at i:68344 original size:21 final size:24
Alignment explanation
Indices: 68275--68346 Score: 87
Period size: 24 Copynumber: 3.0 Consensus size: 24
68265 CCAGCATACA
* *
68275 AACACAAACACAAGCCCAACAACACC
1 AACAC-AACACAA-CACACCAACACC
68301 AACACAACACAACACACCAACACC
1 AACACAACACAACACACCAACACC
68325 AACACAACA-AACAC-CC-ACACC
1 AACACAACACAACACACCAACACC
68346 A
1 A
68347 TGCTCATTTT
Statistics
Matches: 44, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
21 6 0.14
22 2 0.05
23 5 0.11
24 19 0.43
25 7 0.16
26 5 0.11
ACGTcount: A:0.54, C:0.44, G:0.01, T:0.00
Consensus pattern (24 bp):
AACACAACACAACACACCAACACC
Left flanking sequence: Indices 67775 -- 68274
TGTAGAGGTTATGCAGGTAATTTGCAACAATTGTGTAGAATACATGGAAAATGTGGAAAGTAGCA
GTATGCGATTTTGGTTGTGATGGTTTTAGCTCCTCTTTGGAAAATCACGTCTCTGGTTCTCATCA
CTGGTTTACGGACCTTATTTGTACCTGACTGTGTCTCTTTTCTTGGTCCTTCTACGTGGCTTATC
GTGTCGCGCGACAGATCAGTGCAGATCCGATACCACCACACCACCAATAAGTCAATTGCACCGAC
TGTACACATCTCTCAGTCTATAATCATTGTTATTTACCTATTATTTACCTCTATAAATTCCCAAC
CATCCCCAACTTCTTCCTTCGATCCCACACCATCACACCACCCTCCATTCGTCTCACGCTTCCCC
TCTTTTCGCACCGCCACTTTTCTCTAACGTTCCACCGATAGCCAAAACCACTACAAACACATCAC
CAGAACCACACCACCACTACAACCACAACAAAACACCAGCATACA
Right flanking sequence: Indices 68347 -- 68846
TGCTCATTTTCTGCCTCCTCGCGGTCGCCCACTGCTTCGAGGCGGTCCCGCTCTTGCTCGCATCG
CACCGGCTCGTCCCGGACCTCGCGGCCGACCTCAAGGGGTCCTGGCACGACCCGTACCCGGTGGA
GGTGGCCACCAACATGGTCAAACGCGCCATCACCCCGTGTCTGCTGGACGAGTACGTCATCGTCA
ACATCCCGGGCCTCACCAACGCCGACCTCACCGACGACCTGCCGTGGGACCACACGCGCCGCTAC
CTCCACATGGCACTGACGGTGGTGGCCGCCCCCTGGGTCGAGGCACCGCTCGACCTCGATTTCCT
CGAGCAATACGTCATCGAGCGGTGCGACGCCGAAACCATCCCCGTGGTCAACGGCCGCGACGAGG
AGGTGTACCACTACAAGGACACGCGCACCCGGGTGATCCGCATCGACTACGAGGAGCTCGACATC
AACCCGCAGCAGCGCCGCCGCCAGCTCGCCGCCGCCGACGACCTC
Found at i:69377 original size:3 final size:3
Alignment explanation
Indices: 69362--69413 Score: 68
Period size: 3 Copynumber: 17.3 Consensus size: 3
69352 GTCGCCCAGC
* * * *
69362 TCG TCG TCC TCG TCG TAG GCG TCG TCG TCG TCG TCG TCG TCG TAG TCG
1 TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG TCG
69410 TCG T
1 TCG T
69414 ACTCGCCGTC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.04, C:0.31, G:0.33, T:0.33
Consensus pattern (3 bp):
TCG
Left flanking sequence: Indices 68862 -- 69361
CGCAAGCTCCCGCTGCCGCACTACACCATCATCATCACCTCGAGCGAGGTGTCCAACGTGCACCC
GGTGCCGCGGCTGATCCTCCGCGAGTACCCCGAGAACTACCACTTGTTCCACCTGATCAGCCAGG
ACCCGCTGCGGGCCAACCAGGTGGAGCGCAACGACCGGTTCCACCGCGGCGAGCCCGAGTTTGCG
GCGGCGCGCCACACCAACGACCGCTATCTCCGCAACCGCCGGCACGACGAGGTGCACTTTTTCGA
CTACGAGTTGTGGACCAAGAACGACAAGGTGGTGATGACCCTCTTCGTGATGGCGGTCACGTGGG
TGGTGGTCAAGCTCCGCCAGCTACTGCGCCCGAGCCCCGTGCTCGGCAAGGTCAAAACGGGTTAA
TATACAATACATGCTAGTTTATGTGAATGCCATTTTTGCGCACACGCGGCTTATGCAGGGGGACG
GGGTTGGATGCGGGGTCGGTGTCGGATTGCGAGGTGTCGCCCAGC
Right flanking sequence: Indices 69414 -- 69913
ACTCGCCGTCCAGCACCAACACCAGGGCGTCAAAGTACAACAGCGGGTCGAGGCCGGTGATGTCG
GCCAGCGCACACTCGCCCTCCAACAACAACTCGGCCATGATCTTGCCGGTGCCCGGAGCGTTGTT
GATGCCCCAGCACAGGTGGCCCAGCGCCAAAAACAAGTTCTCGACGTTGGTTTCTCCGATCAACG
GGCCCAGCAGCAGCGGCACGTCGAGCACCGGCAAGTAGCACGCCTGTTTCTTGAGCACGTGGCCC
TTGCGGAGGTTGGGCAGGATCTTGCCCACCTGGCGGAACAACTCGTCGCACTTGGACTTGACCAC
CTCGACGTCGTCGGTGGTTTCGGGCACGTCCACCGCCAGGTCGCCCTCGCCGCAAACATACACCT
CGTCCTGACGAGCATAGATTTCCGGCAGAATGTACAGCGCCGCTCCGGTGCGGAACTCGGTGAAG
ATGGCGTACGGCAGCACCGGCTGGTCGCGGAATGGGGCCACGGTG
Found at i:73140 original size:12 final size:12
Alignment explanation
Indices: 73119--73169 Score: 66
Period size: 12 Copynumber: 4.2 Consensus size: 12
73109 TTGTATCTGG
73119 TGTTCCATATTC
1 TGTTCCATATTC
*
73131 TGTTCAATATTC
1 TGTTCCATATTC
* *
73143 TATTCCACATTC
1 TGTTCCATATTC
73155 TGTTCCTATATTC
1 TGTTCC-ATATTC
73168 TG
1 TG
73170 ACATTCACTC
Statistics
Matches: 32, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
12 25 0.78
13 7 0.22
ACGTcount: A:0.20, C:0.24, G:0.08, T:0.49
Consensus pattern (12 bp):
TGTTCCATATTC
Left flanking sequence: Indices 72619 -- 73118
AAGTTGAGAAACAAGATTGCCGGTTACACCACCCACTTGATGAAGAGAATTCAGAAGGGTCCCGT
CAGAGGCATCTCGTTCAAGTTGCAGGAGGAGGAGAGAGAGAGAAAGGACCAGTACGTCCCCGAGG
TTTCTGCTTTGGACTTGTCGCACACCGCTAACGGCCAGTTGGAGGTTGACGCCGAGACCGCCGAG
ATGGTCAAGGCCTTGGGCTTCAAGATCCCCGTGCAGGTTGTTTCTATCTCTGCCCAGAGAGGTCC
CAGAAGATTCGCCAAGAGAAACTAAGTGTACAAATAGAGTAATAAAGGATAATACGTGATGGTAT
CGATTATGAAACTGTGTAGGCGGAGGCGGAACGCGATGAAAGGGAAGCCCCGTGTGGAGTATAGT
GAAAAATGAAAAATCCTGGATCAAAAGAAAGTGGTGATTCGTTTCATATGTGCCTATCTGTTCCA
ACCATTTTTCTTTTGTCTCCTCTGTTTCGTTTTTCTTGTATCTGG
Right flanking sequence: Indices 73170 -- 73669
ACATTCACTCCCCATACCATTCGCACTCACCTACTCCCACTCCATTTTCCGTGGCGCGTCTACAT
TCTATACGATCCTGCCTATGATGTAATAAGGGGTGGGCTGACCAGAACCCGATTCTCTCGTACGA
TGGAACCGTGTCGCGGCACCCACGTCACCCCCCGACCTCGTACCCAGCCCCTGTAACATCACCAT
CCAAAAACCCCACCTAATACCCTCTTAGCACTGCCTTTAAGCCCTGTCTGTTGGCCCCACCTGCC
GTCGCAGTCGTGCGCGCGCAGCAGATCGTATGTAGCGAACTAACAAAGAACAGTCACCCATGCAA
CCCTTCCTCTTTTTCCTTGTCACGGCAGCGTTGTGCAAGTGGTTCCCGCTCACCCGCGAGGGCGA
AGTGCCGCTGCTCGTGCCCTACCCACGTGGACAGGAAATCCCCCTAGATTGCATCCAGCGCAACA
TCGACAACGGAGAACACAAGTTTGACGACAACGACCGCATCATCT
Found at i:78126 original size:20 final size:20
Alignment explanation
Indices: 78076--78130 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
78066 GGGTGGGTGT
78076 TGGAGGTGATCGGAGTCCGC
1 TGGAGGTGATCGGAGTCCGC
** *
78096 TAGG-GAAGATCGGAGTCTGC
1 T-GGAGGTGATCGGAGTCCGC
78116 TGGAGGTGATCGGAG
1 TGGAGGTGATCGGAG
78131 AGCGACAGCG
Statistics
Matches: 28, Mismatches: 5, Indels: 4
0.76 0.14 0.11
Matches are distributed among these distances:
19 2 0.07
20 24 0.86
21 2 0.07
ACGTcount: A:0.20, C:0.15, G:0.45, T:0.20
Consensus pattern (20 bp):
TGGAGGTGATCGGAGTCCGC
Left flanking sequence: Indices 77576 -- 78075
TGACAAGCAGATGAACCACAGCGAGTACGACCGCGAGGTGGCGTTGGAGCAGCAGCGGGCGTGGG
CCAAGTTGACCCCGTCCGAGCGGGTGTTCCAGACGTTGAGCAAGTACAAGTACCAGGTCATTGTG
GGTGCTTGGGCGGCGCTGTTGTACGGGTCGTGGAGATATGTCAACAAGGACAAGTACATGCTGAC
GACCCAGAAGGCGGTGCAGGCGCGTGTGTACGCACAGGCGATTACGGTGGTGCTTTTGTTGCTGA
CCATTTTGCTTGCGATGAAGGAGAACGAGATCAAGGCCAAGGAGGAGCCCAAGAAGCCCCACTGG
CAGCAGGCGTTGGAAGAGGAGCGCGACATGGGCATTCTCCGTGACAAGATGATCCAGGAGAGACA
GGAGCGTGACGCGTCGTTGCGTGGCGAGAAGAAGTAGGTATTTATCAGTAAGCATGAAAGGAAAT
TTCTTTATGTGGGGCCAGAGCGCTTTGTAGACGGTGGGTGGGTGT
Right flanking sequence: Indices 78131 -- 78630
AGCGACAGCGGGCTAGAGCAAGAGAATAAGAGAAGAAAGTAGGGCATTGATCCAGTGTGTGGTTA
GGAGTTACTGCGTGGTTCACCGTTAGTGAGGCGAATCACCGTGAGACCACAAACACAAAGTAAGC
CAGGCAAAATACTATATTGAGAAAAGCACACTCACCCACCAGCATCAACACCACCCACTACCATC
CCCACCATCACCACCGTCACCACCATACGCAATTGTCCCAGACTACCTTCTCACCTCACCTACTG
TCTTCTAAAGCCGCGCGCGGAATTTTTCCCCATCGAAATGGTGAAGAAGGAGCTCGTGGAGGACC
GATTCCAGGCGTTCGTGTTGACCGACTCGTTCGAACTGCGGTTTCTGCCGCTTGCCGACGTCCAG
CCGCGATGCTTGTTGCCGCTTGCCAACGTGCCGTTGCTCGAATACACCCTTGAGTTCCTCGCCAA
GGCAAACGTCAACGAAGTGTACTTGATGTGCACCTCGCACGGCGA
Found at i:78325 original size:19 final size:20
Alignment explanation
Indices: 78288--78325 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
78278 TGAGAAAAGC
*
78288 ACACTCACCCACCAGCATCA
1 ACACTCACCCACCACCATCA
*
78308 ACAC-CACCCACTACCATC
1 ACACTCACCCACCACCATC
78326 CCCACCATCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 12 0.75
20 4 0.25
ACGTcount: A:0.34, C:0.53, G:0.03, T:0.11
Consensus pattern (20 bp):
ACACTCACCCACCACCATCA
Left flanking sequence: Indices 77788 -- 78287
AGGCGCGTGTGTACGCACAGGCGATTACGGTGGTGCTTTTGTTGCTGACCATTTTGCTTGCGATG
AAGGAGAACGAGATCAAGGCCAAGGAGGAGCCCAAGAAGCCCCACTGGCAGCAGGCGTTGGAAGA
GGAGCGCGACATGGGCATTCTCCGTGACAAGATGATCCAGGAGAGACAGGAGCGTGACGCGTCGT
TGCGTGGCGAGAAGAAGTAGGTATTTATCAGTAAGCATGAAAGGAAATTTCTTTATGTGGGGCCA
GAGCGCTTTGTAGACGGTGGGTGGGTGTTGGAGGTGATCGGAGTCCGCTAGGGAAGATCGGAGTC
TGCTGGAGGTGATCGGAGAGCGACAGCGGGCTAGAGCAAGAGAATAAGAGAAGAAAGTAGGGCAT
TGATCCAGTGTGTGGTTAGGAGTTACTGCGTGGTTCACCGTTAGTGAGGCGAATCACCGTGAGAC
CACAAACACAAAGTAAGCCAGGCAAAATACTATATTGAGAAAAGC
Right flanking sequence: Indices 78326 -- 78825
CCCACCATCACCACCGTCACCACCATACGCAATTGTCCCAGACTACCTTCTCACCTCACCTACTG
TCTTCTAAAGCCGCGCGCGGAATTTTTCCCCATCGAAATGGTGAAGAAGGAGCTCGTGGAGGACC
GATTCCAGGCGTTCGTGTTGACCGACTCGTTCGAACTGCGGTTTCTGCCGCTTGCCGACGTCCAG
CCGCGATGCTTGTTGCCGCTTGCCAACGTGCCGTTGCTCGAATACACCCTTGAGTTCCTCGCCAA
GGCAAACGTCAACGAAGTGTACTTGATGTGCACCTCGCACGGCGAGGCCATCAAGCAGTACGTGG
CCCAGCTGAAATGGGCAGACAACCGGGTGTTCACCGTCAACGTCATTCTTCTGTTGGAGTCCACC
CTGATCGGCGATGCCATGCGAGACATCGACAACCGCGGCATCGTCACCGGGGACTTTTTGCTCGT
CCAGGGCGATGTGGTGACCAACATCGACTTCAGCAAGGTGATGGC
Found at i:84923 original size:22 final size:21
Alignment explanation
Indices: 84898--84953 Score: 51
Period size: 22 Copynumber: 2.6 Consensus size: 21
84888 AGAATTGTAG
*
84898 GTGGTGG-GGTAGAGGTGGGGTA
1 GTGGTGGAGG-AG-GGTGGAGTA
84920 GTGGGTGGAGGAGGGTGGAGTA
1 GT-GGTGGAGGAGGGTGGAGTA
* *
84942 GTCGTGGTGGAG
1 GTGGTGGAGGAG
84954 TAGTCGTGGT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 8 0.28
22 12 0.41
23 7 0.24
24 2 0.07
ACGTcount: A:0.14, C:0.02, G:0.62, T:0.21
Consensus pattern (21 bp):
GTGGTGGAGGAGGGTGGAGTA
Left flanking sequence: Indices 84398 -- 84897
ACACTGGACCAAGTACACCGATGGGCTCTTGCTGCTTTCCGAGGTCAACATGGCCGAGCGCGAGA
TGATCGCCATGCTCAACTGGGACGTCACCATCAAGGAGGACGAGTTGAAGGTGGCGTTGCAGCCG
TTCCTCTGTCGCATCAACCAACAGCTTGTGCGCCAGAAGCGCGACGAGTTGGAGAAGAAGGCTTC
GTTCTACCGGTTGCTGACGGCGTGCCGCAAGCAGCAGTCGAACTCGAGTTTGCTGAGCGTGACCC
TGTCCAACTACCTGCTCCAGTCGCAGCAGCTGGGGTTGTCGCTGATGCTGAGCTTGTCGCTGATT
GTCGACGACTGTCTGCACGTGTTGAACTACTCGGGGCGCAAGTCGCGGGCGCTCAAGGTGCTCAA
CACGCGTGCGTGAATATTGCATAGCTTGGGCGATGCCCAGGCACTTCATTTATAAACTATTGACT
AGTTTGGTTTGGTATGGGAATTAATGGGATTAATGAGAATTGTAG
Right flanking sequence: Indices 84954 -- 85453
TAGTCGTGGTGGAGTAGTATTGGCGCAGTAGTGGGGTAGTGGGGTAGTGTGGTGCTAAAAGTGCT
AATAGGGTTTAGACGCGTAGGAGTCGACGAATTGAGTAACGACGCGCGCGACAGGTAGGGCGACA
GGTAGGGCGACAGGTAGGACTACAGAATTGGTCCAGAGCGATGGGACTATAGAAACCGACCAAGG
CAATTGAGACCATCCTCAACTCGTAAACACTGGTTGTGGCTGCTGATTGTGGCCTATGCGAGTGT
AGTTTGTACTATGATTCAGGGCTTCTGTATCTGGGCTTAGGCACAGGCTTAGGCCGACAGTAACC
ACACAGTAACCACACCAGACAGTAACCAGGCAGAACCAGACAGTAACCAGAAACCACAGTAACCA
GAAACCACGCCGCGCCTCTGCCCGCCTGTGACTGGGCTCACCACACCCATCCCTGGAGCCCCTGT
GGCTGTGCGAATCATGCCATTCCCCCTTCGCGCGCCTTGCATACA
Found at i:84972 original size:17 final size:14
Alignment explanation
Indices: 84933--84971 Score: 78
Period size: 14 Copynumber: 2.8 Consensus size: 14
84923 GGTGGAGGAG
84933 GGTGGAGTAGTCGT
1 GGTGGAGTAGTCGT
84947 GGTGGAGTAGTCGT
1 GGTGGAGTAGTCGT
84961 GGTGGAGTAGT
1 GGTGGAGTAGT
84972 ATTGGCGCAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 25 1.00
ACGTcount: A:0.15, C:0.05, G:0.51, T:0.28
Consensus pattern (14 bp):
GGTGGAGTAGTCGT
Left flanking sequence: Indices 84433 -- 84932
TTTCCGAGGTCAACATGGCCGAGCGCGAGATGATCGCCATGCTCAACTGGGACGTCACCATCAAG
GAGGACGAGTTGAAGGTGGCGTTGCAGCCGTTCCTCTGTCGCATCAACCAACAGCTTGTGCGCCA
GAAGCGCGACGAGTTGGAGAAGAAGGCTTCGTTCTACCGGTTGCTGACGGCGTGCCGCAAGCAGC
AGTCGAACTCGAGTTTGCTGAGCGTGACCCTGTCCAACTACCTGCTCCAGTCGCAGCAGCTGGGG
TTGTCGCTGATGCTGAGCTTGTCGCTGATTGTCGACGACTGTCTGCACGTGTTGAACTACTCGGG
GCGCAAGTCGCGGGCGCTCAAGGTGCTCAACACGCGTGCGTGAATATTGCATAGCTTGGGCGATG
CCCAGGCACTTCATTTATAAACTATTGACTAGTTTGGTTTGGTATGGGAATTAATGGGATTAATG
AGAATTGTAGGTGGTGGGGTAGAGGTGGGGTAGTGGGTGGAGGAG
Right flanking sequence: Indices 84972 -- 85471
ATTGGCGCAGTAGTGGGGTAGTGGGGTAGTGTGGTGCTAAAAGTGCTAATAGGGTTTAGACGCGT
AGGAGTCGACGAATTGAGTAACGACGCGCGCGACAGGTAGGGCGACAGGTAGGGCGACAGGTAGG
ACTACAGAATTGGTCCAGAGCGATGGGACTATAGAAACCGACCAAGGCAATTGAGACCATCCTCA
ACTCGTAAACACTGGTTGTGGCTGCTGATTGTGGCCTATGCGAGTGTAGTTTGTACTATGATTCA
GGGCTTCTGTATCTGGGCTTAGGCACAGGCTTAGGCCGACAGTAACCACACAGTAACCACACCAG
ACAGTAACCAGGCAGAACCAGACAGTAACCAGAAACCACAGTAACCAGAAACCACGCCGCGCCTC
TGCCCGCCTGTGACTGGGCTCACCACACCCATCCCTGGAGCCCCTGTGGCTGTGCGAATCATGCC
ATTCCCCCTTCGCGCGCCTTGCATACACCGCGACGGTTGCCAGGT
Found at i:85108 original size:12 final size:12
Alignment explanation
Indices: 85066--85101 Score: 72
Period size: 12 Copynumber: 3.0 Consensus size: 12
85056 AACGACGCGC
85066 GCGACAGGTAGG
1 GCGACAGGTAGG
85078 GCGACAGGTAGG
1 GCGACAGGTAGG
85090 GCGACAGGTAGG
1 GCGACAGGTAGG
85102 ACTACAGAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.50, T:0.08
Consensus pattern (12 bp):
GCGACAGGTAGG
Left flanking sequence: Indices 84566 -- 85065
GCGCGACGAGTTGGAGAAGAAGGCTTCGTTCTACCGGTTGCTGACGGCGTGCCGCAAGCAGCAGT
CGAACTCGAGTTTGCTGAGCGTGACCCTGTCCAACTACCTGCTCCAGTCGCAGCAGCTGGGGTTG
TCGCTGATGCTGAGCTTGTCGCTGATTGTCGACGACTGTCTGCACGTGTTGAACTACTCGGGGCG
CAAGTCGCGGGCGCTCAAGGTGCTCAACACGCGTGCGTGAATATTGCATAGCTTGGGCGATGCCC
AGGCACTTCATTTATAAACTATTGACTAGTTTGGTTTGGTATGGGAATTAATGGGATTAATGAGA
ATTGTAGGTGGTGGGGTAGAGGTGGGGTAGTGGGTGGAGGAGGGTGGAGTAGTCGTGGTGGAGTA
GTCGTGGTGGAGTAGTATTGGCGCAGTAGTGGGGTAGTGGGGTAGTGTGGTGCTAAAAGTGCTAA
TAGGGTTTAGACGCGTAGGAGTCGACGAATTGAGTAACGACGCGC
Right flanking sequence: Indices 85102 -- 85601
ACTACAGAATTGGTCCAGAGCGATGGGACTATAGAAACCGACCAAGGCAATTGAGACCATCCTCA
ACTCGTAAACACTGGTTGTGGCTGCTGATTGTGGCCTATGCGAGTGTAGTTTGTACTATGATTCA
GGGCTTCTGTATCTGGGCTTAGGCACAGGCTTAGGCCGACAGTAACCACACAGTAACCACACCAG
ACAGTAACCAGGCAGAACCAGACAGTAACCAGAAACCACAGTAACCAGAAACCACGCCGCGCCTC
TGCCCGCCTGTGACTGGGCTCACCACACCCATCCCTGGAGCCCCTGTGGCTGTGCGAATCATGCC
ATTCCCCCTTCGCGCGCCTTGCATACACCGCGACGGTTGCCAGGTAGTGCTGAAATTTACCGGTT
TATTTGTTTACATATTATTTTCTAGTGGTCGTGAGGGTCCTCCTTCGGGGGCTCGGGAGCAACGG
TGATCATGGTGTCGATACGCAAGATCGCCACGCACGCCTCGAGCG
Found at i:85300 original size:16 final size:16
Alignment explanation
Indices: 85276--85306 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
85266 GCCGACAGTA
85276 ACCACACAGTAACCAC
1 ACCACACAGTAACCAC
*
85292 ACCAGACAGTAACCA
1 ACCACACAGTAACCA
85307 GGCAGAACCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.39, G:0.10, T:0.06
Consensus pattern (16 bp):
ACCACACAGTAACCAC
Left flanking sequence: Indices 84776 -- 85275
CAAGGTGCTCAACACGCGTGCGTGAATATTGCATAGCTTGGGCGATGCCCAGGCACTTCATTTAT
AAACTATTGACTAGTTTGGTTTGGTATGGGAATTAATGGGATTAATGAGAATTGTAGGTGGTGGG
GTAGAGGTGGGGTAGTGGGTGGAGGAGGGTGGAGTAGTCGTGGTGGAGTAGTCGTGGTGGAGTAG
TATTGGCGCAGTAGTGGGGTAGTGGGGTAGTGTGGTGCTAAAAGTGCTAATAGGGTTTAGACGCG
TAGGAGTCGACGAATTGAGTAACGACGCGCGCGACAGGTAGGGCGACAGGTAGGGCGACAGGTAG
GACTACAGAATTGGTCCAGAGCGATGGGACTATAGAAACCGACCAAGGCAATTGAGACCATCCTC
AACTCGTAAACACTGGTTGTGGCTGCTGATTGTGGCCTATGCGAGTGTAGTTTGTACTATGATTC
AGGGCTTCTGTATCTGGGCTTAGGCACAGGCTTAGGCCGACAGTA
Right flanking sequence: Indices 85307 -- 85806
GGCAGAACCAGACAGTAACCAGAAACCACAGTAACCAGAAACCACGCCGCGCCTCTGCCCGCCTG
TGACTGGGCTCACCACACCCATCCCTGGAGCCCCTGTGGCTGTGCGAATCATGCCATTCCCCCTT
CGCGCGCCTTGCATACACCGCGACGGTTGCCAGGTAGTGCTGAAATTTACCGGTTTATTTGTTTA
CATATTATTTTCTAGTGGTCGTGAGGGTCCTCCTTCGGGGGCTCGGGAGCAACGGTGATCATGGT
GTCGATACGCAAGATCGCCACGCACGCCTCGAGCGCCGCCTTCAACGACTTGATCTTGGACACCG
TGGGCTCAAGCACCCCGTGGGTCATCTCGTTGACAATCTTGCCCTCGATCAAGTCCAACCCGTAG
TAGCGGTACTTTTTGCGCTTGGCATCAGCCACGGGCGCCAGCTGCGACGCCGCATGGTAGGTGCG
GAGTTTCGACACGAGCTCCGACAGGTCCTTGGCCGCGTTGATGGC
Found at i:85317 original size:10 final size:11
Alignment explanation
Indices: 85292--85329 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
85282 CAGTAACCAC
85292 ACCAGACAGTA
1 ACCAGACAGTA
*
85303 ACCAGGCAG-A
1 ACCAGACAGTA
85313 ACCAGACAGTA
1 ACCAGACAGTA
85324 ACCAGA
1 ACCAGA
85330 AACCACAGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 9 0.38
11 15 0.62
ACGTcount: A:0.45, C:0.29, G:0.21, T:0.05
Consensus pattern (11 bp):
ACCAGACAGTA
Left flanking sequence: Indices 84792 -- 85291
CGTGCGTGAATATTGCATAGCTTGGGCGATGCCCAGGCACTTCATTTATAAACTATTGACTAGTT
TGGTTTGGTATGGGAATTAATGGGATTAATGAGAATTGTAGGTGGTGGGGTAGAGGTGGGGTAGT
GGGTGGAGGAGGGTGGAGTAGTCGTGGTGGAGTAGTCGTGGTGGAGTAGTATTGGCGCAGTAGTG
GGGTAGTGGGGTAGTGTGGTGCTAAAAGTGCTAATAGGGTTTAGACGCGTAGGAGTCGACGAATT
GAGTAACGACGCGCGCGACAGGTAGGGCGACAGGTAGGGCGACAGGTAGGACTACAGAATTGGTC
CAGAGCGATGGGACTATAGAAACCGACCAAGGCAATTGAGACCATCCTCAACTCGTAAACACTGG
TTGTGGCTGCTGATTGTGGCCTATGCGAGTGTAGTTTGTACTATGATTCAGGGCTTCTGTATCTG
GGCTTAGGCACAGGCTTAGGCCGACAGTAACCACACAGTAACCAC
Right flanking sequence: Indices 85330 -- 85829
AACCACAGTAACCAGAAACCACGCCGCGCCTCTGCCCGCCTGTGACTGGGCTCACCACACCCATC
CCTGGAGCCCCTGTGGCTGTGCGAATCATGCCATTCCCCCTTCGCGCGCCTTGCATACACCGCGA
CGGTTGCCAGGTAGTGCTGAAATTTACCGGTTTATTTGTTTACATATTATTTTCTAGTGGTCGTG
AGGGTCCTCCTTCGGGGGCTCGGGAGCAACGGTGATCATGGTGTCGATACGCAAGATCGCCACGC
ACGCCTCGAGCGCCGCCTTCAACGACTTGATCTTGGACACCGTGGGCTCAAGCACCCCGTGGGTC
ATCTCGTTGACAATCTTGCCCTCGATCAAGTCCAACCCGTAGTAGCGGTACTTTTTGCGCTTGGC
ATCAGCCACGGGCGCCAGCTGCGACGCCGCATGGTAGGTGCGGAGTTTCGACACGAGCTCCGACA
GGTCCTTGGCCGCGTTGATGGCAAGGGTCTTGGGGATAATGAGCA
Found at i:85339 original size:16 final size:16
Alignment explanation
Indices: 85318--85351 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
85308 GCAGAACCAG
85318 ACAGTAACCAGAAACC
1 ACAGTAACCAGAAACC
85334 ACAGTAACCAGAAACC
1 ACAGTAACCAGAAACC
85350 AC
1 AC
85352 GCCGCGCCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.50, C:0.32, G:0.12, T:0.06
Consensus pattern (16 bp):
ACAGTAACCAGAAACC
Left flanking sequence: Indices 84818 -- 85317
CGATGCCCAGGCACTTCATTTATAAACTATTGACTAGTTTGGTTTGGTATGGGAATTAATGGGAT
TAATGAGAATTGTAGGTGGTGGGGTAGAGGTGGGGTAGTGGGTGGAGGAGGGTGGAGTAGTCGTG
GTGGAGTAGTCGTGGTGGAGTAGTATTGGCGCAGTAGTGGGGTAGTGGGGTAGTGTGGTGCTAAA
AGTGCTAATAGGGTTTAGACGCGTAGGAGTCGACGAATTGAGTAACGACGCGCGCGACAGGTAGG
GCGACAGGTAGGGCGACAGGTAGGACTACAGAATTGGTCCAGAGCGATGGGACTATAGAAACCGA
CCAAGGCAATTGAGACCATCCTCAACTCGTAAACACTGGTTGTGGCTGCTGATTGTGGCCTATGC
GAGTGTAGTTTGTACTATGATTCAGGGCTTCTGTATCTGGGCTTAGGCACAGGCTTAGGCCGACA
GTAACCACACAGTAACCACACCAGACAGTAACCAGGCAGAACCAG
Right flanking sequence: Indices 85352 -- 85851
GCCGCGCCTCTGCCCGCCTGTGACTGGGCTCACCACACCCATCCCTGGAGCCCCTGTGGCTGTGC
GAATCATGCCATTCCCCCTTCGCGCGCCTTGCATACACCGCGACGGTTGCCAGGTAGTGCTGAAA
TTTACCGGTTTATTTGTTTACATATTATTTTCTAGTGGTCGTGAGGGTCCTCCTTCGGGGGCTCG
GGAGCAACGGTGATCATGGTGTCGATACGCAAGATCGCCACGCACGCCTCGAGCGCCGCCTTCAA
CGACTTGATCTTGGACACCGTGGGCTCAAGCACCCCGTGGGTCATCTCGTTGACAATCTTGCCCT
CGATCAAGTCCAACCCGTAGTAGCGGTACTTTTTGCGCTTGGCATCAGCCACGGGCGCCAGCTGC
GACGCCGCATGGTAGGTGCGGAGTTTCGACACGAGCTCCGACAGGTCCTTGGCCGCGTTGATGGC
AAGGGTCTTGGGGATAATGAGCATCGCCTGGGCAAACTCGTAGAT
Found at i:87273 original size:9 final size:9
Alignment explanation
Indices: 87259--87297 Score: 60
Period size: 9 Copynumber: 4.1 Consensus size: 9
87249 GAGACCGAAG
87259 GGGAAAAGA
1 GGGAAAAGA
87268 GGGAAAAGA
1 GGGAAAAGA
87277 GGGAAAAGAGA
1 GGG-AAA-AGA
87288 GGGAAAAGA
1 GGGAAAAGA
87297 G
1 G
87298 AGGGAAGGGA
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
9 16 0.57
10 6 0.21
11 6 0.21
ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00
Consensus pattern (9 bp):
GGGAAAAGA
Left flanking sequence: Indices 86759 -- 87258
ACGGTTTGGATGTAGGCAATCAGCTCGCGGAGCGCAAGCCGGTACCCCGCCGCGATGGTGGTGGG
GTGGATCTTATTCTTGATGAGCTCGTTGGCGCGCTTCAAGAGCTCCAGGGCAATGATCACCACCG
AGGTGGTGCCGTCGCCCACCTCGCGGTCCTGCTGCTGGGCCAAGTCCACGAGGATCTTGCCCGCG
GGGTGCTGCACGTCCAACAAGCTCAAGATGGTGGCGCCGTCGTTGGTGACGGTGACGTCTCCGAT
GTCGTCGACCAACATTTTGTCGAGCCCGACGGGGCCGAGCGACAGCTTGACCACGTTCGCCACCG
ACAACGCCGCCATCACGTTCTGATTGCGGATATCGTCGCCAGACACCTTTTCTCCCCCGAGGAAG
AGGGTATCAGACCGGGCGGTGGAGATCATGTTGGTTGATGAGTCCTGAAAATTCGTTAAGTAGTG
CGGTCACGTGGCGGGGAAAAAGGGACTGATAGAACGAGACCGAAG
Right flanking sequence: Indices 87298 -- 87797
AGGGAAGGGAAGGGGAAAAGAGAAGGGAAGAAAGGGGATAAAATTGTAACAGAAGAGAGGAGAGA
AAATGAAGAGATTGGATAATTGCAAATAGAAGGAAATGGGAGAGTGACACACTGAATCAGCGAGA
CACTGAGTGAGAGCTTGAACGGTGGCAAAGAGAGTAGGCACTTATTTATTTCTCGTCCTCGTAAT
CGCCACTGGGCCTGGAATCCTCACATCCACCCAATTGACCTGGCACCGGACCCACTGATCACCAC
CTCACCCTCGCTACCTGCTCACCACCTCACCCTCGCTACCGCTCACCACCTTCCCGCGCGAAAGT
GGGCCCACGCCCACCGCGTCGGGTCTCGAACGCGTTACGAGAAAAGCACCGAGCCTGAAACTAGC
CGAGCGTCGCATTGAGACACGAAACAACCCCACGGAGCTACCCTGTAAATACCCTTCACATCCAG
CACCACTTCCACCACCTCTCCTACTACTTCTTTCTTACTGCCTTT
Found at i:87290 original size:11 final size:11
Alignment explanation
Indices: 87265--87326 Score: 67
Period size: 11 Copynumber: 5.7 Consensus size: 11
87255 GAAGGGGAAA
87265 AGAGGG-AAA-
1 AGAGGGAAAAG
87274 AGAGGGAAAAG
1 AGAGGGAAAAG
87285 AGAGGGAAAAG
1 AGAGGGAAAAG
**
87296 AGAGGGAAGGG
1 AGAGGGAAAAG
87307 A-AGGGGAAAAG
1 AGA-GGGAAAAG
87318 AGAAGGGAA
1 AG-AGGGAA
87327 GAAAGGGGAT
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
9 6 0.14
10 4 0.09
11 28 0.64
12 5 0.11
13 1 0.02
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (11 bp):
AGAGGGAAAAG
Left flanking sequence: Indices 86765 -- 87264
TGGATGTAGGCAATCAGCTCGCGGAGCGCAAGCCGGTACCCCGCCGCGATGGTGGTGGGGTGGAT
CTTATTCTTGATGAGCTCGTTGGCGCGCTTCAAGAGCTCCAGGGCAATGATCACCACCGAGGTGG
TGCCGTCGCCCACCTCGCGGTCCTGCTGCTGGGCCAAGTCCACGAGGATCTTGCCCGCGGGGTGC
TGCACGTCCAACAAGCTCAAGATGGTGGCGCCGTCGTTGGTGACGGTGACGTCTCCGATGTCGTC
GACCAACATTTTGTCGAGCCCGACGGGGCCGAGCGACAGCTTGACCACGTTCGCCACCGACAACG
CCGCCATCACGTTCTGATTGCGGATATCGTCGCCAGACACCTTTTCTCCCCCGAGGAAGAGGGTA
TCAGACCGGGCGGTGGAGATCATGTTGGTTGATGAGTCCTGAAAATTCGTTAAGTAGTGCGGTCA
CGTGGCGGGGAAAAAGGGACTGATAGAACGAGACCGAAGGGGAAA
Right flanking sequence: Indices 87327 -- 87826
GAAAGGGGATAAAATTGTAACAGAAGAGAGGAGAGAAAATGAAGAGATTGGATAATTGCAAATAG
AAGGAAATGGGAGAGTGACACACTGAATCAGCGAGACACTGAGTGAGAGCTTGAACGGTGGCAAA
GAGAGTAGGCACTTATTTATTTCTCGTCCTCGTAATCGCCACTGGGCCTGGAATCCTCACATCCA
CCCAATTGACCTGGCACCGGACCCACTGATCACCACCTCACCCTCGCTACCTGCTCACCACCTCA
CCCTCGCTACCGCTCACCACCTTCCCGCGCGAAAGTGGGCCCACGCCCACCGCGTCGGGTCTCGA
ACGCGTTACGAGAAAAGCACCGAGCCTGAAACTAGCCGAGCGTCGCATTGAGACACGAAACAACC
CCACGGAGCTACCCTGTAAATACCCTTCACATCCAGCACCACTTCCACCACCTCTCCTACTACTT
CTTTCTTACTGCCTTTCTGTCTCTCTCTCCTCCAGCCGCACGCGC
Found at i:87332 original size:22 final size:22
Alignment explanation
Indices: 87263--87335 Score: 71
Period size: 22 Copynumber: 3.4 Consensus size: 22
87253 CCGAAGGGGA
* *
87263 AAAGAGGGAAAAGAG-GGAAAAG
1 AAAG-GGGAAAAGAGAGGGAAGG
*
87285 AGA-GGGAAAAGAGAGGGAAGG
1 AAAGGGGAAAAGAGAGGGAAGG
*
87306 GAAGGGGAAAAGAGAAGGGAA-G
1 AAAGGGGAAAAGAG-AGGGAAGG
87328 AAAGGGGA
1 AAAGGGGA
87336 TAAAATTGTA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
20 10 0.24
21 6 0.14
22 20 0.48
23 6 0.14
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (22 bp):
AAAGGGGAAAAGAGAGGGAAGG
Left flanking sequence: Indices 86763 -- 87262
TTTGGATGTAGGCAATCAGCTCGCGGAGCGCAAGCCGGTACCCCGCCGCGATGGTGGTGGGGTGG
ATCTTATTCTTGATGAGCTCGTTGGCGCGCTTCAAGAGCTCCAGGGCAATGATCACCACCGAGGT
GGTGCCGTCGCCCACCTCGCGGTCCTGCTGCTGGGCCAAGTCCACGAGGATCTTGCCCGCGGGGT
GCTGCACGTCCAACAAGCTCAAGATGGTGGCGCCGTCGTTGGTGACGGTGACGTCTCCGATGTCG
TCGACCAACATTTTGTCGAGCCCGACGGGGCCGAGCGACAGCTTGACCACGTTCGCCACCGACAA
CGCCGCCATCACGTTCTGATTGCGGATATCGTCGCCAGACACCTTTTCTCCCCCGAGGAAGAGGG
TATCAGACCGGGCGGTGGAGATCATGTTGGTTGATGAGTCCTGAAAATTCGTTAAGTAGTGCGGT
CACGTGGCGGGGAAAAAGGGACTGATAGAACGAGACCGAAGGGGA
Right flanking sequence: Indices 87336 -- 87835
TAAAATTGTAACAGAAGAGAGGAGAGAAAATGAAGAGATTGGATAATTGCAAATAGAAGGAAATG
GGAGAGTGACACACTGAATCAGCGAGACACTGAGTGAGAGCTTGAACGGTGGCAAAGAGAGTAGG
CACTTATTTATTTCTCGTCCTCGTAATCGCCACTGGGCCTGGAATCCTCACATCCACCCAATTGA
CCTGGCACCGGACCCACTGATCACCACCTCACCCTCGCTACCTGCTCACCACCTCACCCTCGCTA
CCGCTCACCACCTTCCCGCGCGAAAGTGGGCCCACGCCCACCGCGTCGGGTCTCGAACGCGTTAC
GAGAAAAGCACCGAGCCTGAAACTAGCCGAGCGTCGCATTGAGACACGAAACAACCCCACGGAGC
TACCCTGTAAATACCCTTCACATCCAGCACCACTTCCACCACCTCTCCTACTACTTCTTTCTTAC
TGCCTTTCTGTCTCTCTCTCCTCCAGCCGCACGCGCTATTATCGA
Found at i:87606 original size:24 final size:25
Alignment explanation
Indices: 87551--87608 Score: 109
Period size: 25 Copynumber: 2.4 Consensus size: 25
87541 GACCCACTGA
87551 TCACCACCTCACCCTCGCTACCTGC
1 TCACCACCTCACCCTCGCTACCTGC
87576 TCACCACCTCACCCTCGCTACC-GC
1 TCACCACCTCACCCTCGCTACCTGC
87600 TCACCACCT
1 TCACCACCT
87609 TCCCGCGCGA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 11 0.33
25 22 0.67
ACGTcount: A:0.17, C:0.57, G:0.07, T:0.19
Consensus pattern (25 bp):
TCACCACCTCACCCTCGCTACCTGC
Left flanking sequence: Indices 87051 -- 87550
GGCCGAGCGACAGCTTGACCACGTTCGCCACCGACAACGCCGCCATCACGTTCTGATTGCGGATA
TCGTCGCCAGACACCTTTTCTCCCCCGAGGAAGAGGGTATCAGACCGGGCGGTGGAGATCATGTT
GGTTGATGAGTCCTGAAAATTCGTTAAGTAGTGCGGTCACGTGGCGGGGAAAAAGGGACTGATAG
AACGAGACCGAAGGGGAAAAGAGGGAAAAGAGGGAAAAGAGAGGGAAAAGAGAGGGAAGGGAAGG
GGAAAAGAGAAGGGAAGAAAGGGGATAAAATTGTAACAGAAGAGAGGAGAGAAAATGAAGAGATT
GGATAATTGCAAATAGAAGGAAATGGGAGAGTGACACACTGAATCAGCGAGACACTGAGTGAGAG
CTTGAACGGTGGCAAAGAGAGTAGGCACTTATTTATTTCTCGTCCTCGTAATCGCCACTGGGCCT
GGAATCCTCACATCCACCCAATTGACCTGGCACCGGACCCACTGA
Right flanking sequence: Indices 87609 -- 88108
TCCCGCGCGAAAGTGGGCCCACGCCCACCGCGTCGGGTCTCGAACGCGTTACGAGAAAAGCACCG
AGCCTGAAACTAGCCGAGCGTCGCATTGAGACACGAAACAACCCCACGGAGCTACCCTGTAAATA
CCCTTCACATCCAGCACCACTTCCACCACCTCTCCTACTACTTCTTTCTTACTGCCTTTCTGTCT
CTCTCTCCTCCAGCCGCACGCGCTATTATCGATCCAAAAATAAACAACCGTCACAATACCATGTT
TGCCCTCGCCTTCCGCCCCCCGGTGGCGCGGCTTACCAGCCGTGCGCTCGTCCTGGTGCCATTGC
ACCCGCAATTGACCGTGCGCTGGGCGTCCACGGCCGCTGCGGCCAAGACCCAGCTCCGGAGCCAG
ATCCAAAAGGAGAAGGCCAAGTTGAAGCAGATGGAGGCCAAGGCCAAGGAACACGAGCGCAAAGT
GAAGGAGCGGTCGAAACAGCGCAAGGCCAAGGAGAAGGAGGCCGC
Found at i:97473 original size:15 final size:15
Alignment explanation
Indices: 97453--97516 Score: 94
Period size: 15 Copynumber: 4.3 Consensus size: 15
97443 CCACCGCGGC
*
97453 CGCCCCTACGTATCT
1 CGCCCCTACGTATTT
97468 CGCCCCTTAC-TATTT
1 CGCCCC-TACGTATTT
*
97483 CGCCCCTACGTGTTT
1 CGCCCCTACGTATTT
97498 CGCCCCTACGTATTT
1 CGCCCCTACGTATTT
97513 CGCC
1 CGCC
97517 GTTGCACGAC
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
14 3 0.07
15 38 0.86
16 3 0.07
ACGTcount: A:0.11, C:0.44, G:0.14, T:0.31
Consensus pattern (15 bp):
CGCCCCTACGTATTT
Left flanking sequence: Indices 96953 -- 97452
GCATAGTTATCAAACACCGTCGGCACGTAGTCGGCGGGAAATTTCAGGGTGGTGTACAGGATAAG
CAAACACGTCTTACCAACGGCACCGTCGCCGACAACCACACATTTTATCGTCTGCATTCTGGCCG
CTCGAGGGGTTGAAGGTGACAATAAACAAACTGCTCGAGTGTAAAAAGGTGGACGGCGTGCAAGT
GCGAACCGCGAGAAAAAATCGTATCACGGGTCAAGTACAGGAGGGGCCGGTGTCCGGGAAAAACG
CGTGGCGTGGCTGGTGGTGGGGAGAGGGGGGTCTACGCTGGGCGACGGGCCACGGGCCTGACGGG
CGGGACGGTGGCGGGTTGTTTCGCGGTGAATAGGGGCTACGCTCACCGGCAAAAAATAGCGAAAA
AGAAACGGAAAAAATTTCCCAGACGTGTTTATCGCCCGAGCACAAAGCGGGAAAGCGGGGTGGTT
TTTGTAGAGCCAGAGCCGGTGGGCCAGCCGCCACACCACCGCGGC
Right flanking sequence: Indices 97517 -- 98016
GTTGCACGACATTCTGACGCGTGAAATCTACCGCTGAGATAGGAAATTATTAGGCTTATGTACAG
TCATATGAGCTCCAGATCGCCAATCACCTCGAGGTTCTCGGAGGGGAGCCCGGCCGCAAACGGCT
TGGCCAACGGCGGGTCGAACCGCGGCATGTCCATCTCGTTCTCGAGAATCGTCGGCCCGCCCCCC
AAAAAGTCGAGCATCATGTGCATACCACCGGCCCCCCCGGCGTACTCCTCGACGTCCACCGGGAG
CACCTGCGACACCCCCTCGAGAAACCACACCTTGTCCTTCATCTCCGTCGTAAACAGCCGCAACA
ACTTGTAGTAGGACCGCATGATGCGCATGCTCTTGATGTCGCCCGTCATCAACAACGACAAAAAC
AGCTTGTCGAGGAGCGCGGGGAAGGCAAAGATCCGCAAGATAAAGTCCAGCTTGTAGCGCTCCTT
GTGCAACTTGTTGAGGTACGCCAACGTCACCAAGTACGGCAGGTC
Found at i:100118 original size:9 final size:9
Alignment explanation
Indices: 100104--100146 Score: 77
Period size: 9 Copynumber: 4.8 Consensus size: 9
100094 AGCCGCGGCG
*
100104 GAAGCGCGA
1 GAAGCGGGA
100113 GAAGCGGGA
1 GAAGCGGGA
100122 GAAGCGGGA
1 GAAGCGGGA
100131 GAAGCGGGA
1 GAAGCGGGA
100140 GAAGCGG
1 GAAGCGG
100147 CCCAAGTTGT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 33 1.00
ACGTcount: A:0.33, C:0.14, G:0.53, T:0.00
Consensus pattern (9 bp):
GAAGCGGGA
Left flanking sequence: Indices 99604 -- 100103
GTCCCGGCCACGGTTTCCGGAGGCCATCTCGTATTTGGCGCTAGCGCATATATCCGGCGGGTTAC
GCGCACTGGAGCCATCACCATGACCAGAGTGCTTGAGCTCAGCGAGCGGGAGCTCGCGGCCAACA
CGTCGGACGACGCGTCCTGGCACTACGACTACCGTGACACCGCCTACATCTACATCGGCAACCTT
CCTCCGCTCCTGAACCTCGACATCTTGCGGGTGTTTTCCCAGTGGGGCCTTCCTACTCATCTCCA
CCTCGTGCGGGACGAGGACGGGCGCAGCCGCGGGTTCGGGTACCTCAAGTACGCCGACCCGCGGT
CGTGTGCGTTGGCGGTGGACAATGCGAGCGGGGTGAAGATCCAGGGGCGGGCGTTGCGGGTGGAC
CACACCTATTTCAAGCTCAAGCGCAACCAGCGCGAGGACGACTTTAAGATCGACTACAGCGGGGT
GGTGGCCGAGGTGCAGGCGGCGCGGAAGGCGGTCGAGCCGCGGCG
Right flanking sequence: Indices 100147 -- 100646
CCCAAGTTGTTGGAGTACAAGGGGGAGAATGACAACTTGAAGGACGAATTGAAGGATCCTATGGG
GGGTGATGACTTGAAGGACCCGATGGCGGGGTTGGACGATTTGAAGGACCCGATGGCGGGGTTGG
ACGACTTGTCCGACCCCATGGCCCAGTTTGAGAAGAAGTAAGACGTGATGGCTACACCAGTGTGG
AGAAGACTTGAATTAGCCGATTGAATCAGAGTATTCGCCCGAGAGCCATGGTATTAGGCCCATTG
ATGCAGCTAAGAGCCAGGTTTAGAGCTTGAAGACCGAGAAAAGAAGAGCTAGAAGAAGGACTGGA
GTCAGGTCTTACTAGTTGGGACCAGTATGGTACGAGTCAATTGTATGATACCAGTCAATTATGGT
TCTATAAGCAGCTAAGCTGAACCGTATCCCCCGTGCTCCTTCAGTCGTGGTAGCTATAGGTGGGC
TTTAACTGTTGGTTACTTCACCCACCCACCCGCCTCCACACCGTA
Found at i:100256 original size:30 final size:30
Alignment explanation
Indices: 100188--100280 Score: 120
Period size: 30 Copynumber: 3.2 Consensus size: 30
100178 ACAACTTGAA
* *
100188 GGACGAATTGAAGGATCCTATGG-GGGG-T
1 GGACGAATTGAAGGACCCGATGGCGGGGTT
* *
100216 -GATGACTTGAAGGACCCGATGGCGGGGTT
1 GGACGAATTGAAGGACCCGATGGCGGGGTT
*
100245 GGACGATTTGAAGGACCCGATGGCGGGGTT
1 GGACGAATTGAAGGACCCGATGGCGGGGTT
100275 GGACGA
1 GGACGA
100281 CTTGTCCGAC
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
27 18 0.32
28 4 0.07
29 1 0.02
30 33 0.59
ACGTcount: A:0.23, C:0.15, G:0.43, T:0.19
Consensus pattern (30 bp):
GGACGAATTGAAGGACCCGATGGCGGGGTT
Left flanking sequence: Indices 99688 -- 100187
ATGACCAGAGTGCTTGAGCTCAGCGAGCGGGAGCTCGCGGCCAACACGTCGGACGACGCGTCCTG
GCACTACGACTACCGTGACACCGCCTACATCTACATCGGCAACCTTCCTCCGCTCCTGAACCTCG
ACATCTTGCGGGTGTTTTCCCAGTGGGGCCTTCCTACTCATCTCCACCTCGTGCGGGACGAGGAC
GGGCGCAGCCGCGGGTTCGGGTACCTCAAGTACGCCGACCCGCGGTCGTGTGCGTTGGCGGTGGA
CAATGCGAGCGGGGTGAAGATCCAGGGGCGGGCGTTGCGGGTGGACCACACCTATTTCAAGCTCA
AGCGCAACCAGCGCGAGGACGACTTTAAGATCGACTACAGCGGGGTGGTGGCCGAGGTGCAGGCG
GCGCGGAAGGCGGTCGAGCCGCGGCGGAAGCGCGAGAAGCGGGAGAAGCGGGAGAAGCGGGAGAA
GCGGCCCAAGTTGTTGGAGTACAAGGGGGAGAATGACAACTTGAA
Right flanking sequence: Indices 100281 -- 100780
CTTGTCCGACCCCATGGCCCAGTTTGAGAAGAAGTAAGACGTGATGGCTACACCAGTGTGGAGAA
GACTTGAATTAGCCGATTGAATCAGAGTATTCGCCCGAGAGCCATGGTATTAGGCCCATTGATGC
AGCTAAGAGCCAGGTTTAGAGCTTGAAGACCGAGAAAAGAAGAGCTAGAAGAAGGACTGGAGTCA
GGTCTTACTAGTTGGGACCAGTATGGTACGAGTCAATTGTATGATACCAGTCAATTATGGTTCTA
TAAGCAGCTAAGCTGAACCGTATCCCCCGTGCTCCTTCAGTCGTGGTAGCTATAGGTGGGCTTTA
ACTGTTGGTTACTTCACCCACCCACCCGCCTCCACACCGTACAACATACACCACCAATACCACCA
AAACCTAACACACTACAACTGCCACACTCTAGGCGTTGGGGGGGTCTGGGGGGGCGCCGCTCGCG
GCCCCCCCAGTTGCAACTCTACGTTTTGTGGCCCCCGTATAAGTA
Found at i:100292 original size:30 final size:30
Alignment explanation
Indices: 100219--100298 Score: 106
Period size: 30 Copynumber: 2.7 Consensus size: 30
100209 GGGGGGTGAT
*
100219 GACTTGAAGGACCCGATGGCGGGGTTGGAC
1 GACTTGAACGACCCGATGGCGGGGTTGGAC
* *
100249 GATTTGAAGGACCCGATGGCGGGGTTGGAC
1 GACTTGAACGACCCGATGGCGGGGTTGGAC
** *
100279 GACTTGTCCGACCCCATGGC
1 GACTTGAACGACCCGATGGC
100299 CCAGTTTGAG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 44 1.00
ACGTcount: A:0.19, C:0.24, G:0.39, T:0.19
Consensus pattern (30 bp):
GACTTGAACGACCCGATGGCGGGGTTGGAC
Left flanking sequence: Indices 99719 -- 100218
AGCTCGCGGCCAACACGTCGGACGACGCGTCCTGGCACTACGACTACCGTGACACCGCCTACATC
TACATCGGCAACCTTCCTCCGCTCCTGAACCTCGACATCTTGCGGGTGTTTTCCCAGTGGGGCCT
TCCTACTCATCTCCACCTCGTGCGGGACGAGGACGGGCGCAGCCGCGGGTTCGGGTACCTCAAGT
ACGCCGACCCGCGGTCGTGTGCGTTGGCGGTGGACAATGCGAGCGGGGTGAAGATCCAGGGGCGG
GCGTTGCGGGTGGACCACACCTATTTCAAGCTCAAGCGCAACCAGCGCGAGGACGACTTTAAGAT
CGACTACAGCGGGGTGGTGGCCGAGGTGCAGGCGGCGCGGAAGGCGGTCGAGCCGCGGCGGAAGC
GCGAGAAGCGGGAGAAGCGGGAGAAGCGGGAGAAGCGGCCCAAGTTGTTGGAGTACAAGGGGGAG
AATGACAACTTGAAGGACGAATTGAAGGATCCTATGGGGGGTGAT
Right flanking sequence: Indices 100299 -- 100798
CCAGTTTGAGAAGAAGTAAGACGTGATGGCTACACCAGTGTGGAGAAGACTTGAATTAGCCGATT
GAATCAGAGTATTCGCCCGAGAGCCATGGTATTAGGCCCATTGATGCAGCTAAGAGCCAGGTTTA
GAGCTTGAAGACCGAGAAAAGAAGAGCTAGAAGAAGGACTGGAGTCAGGTCTTACTAGTTGGGAC
CAGTATGGTACGAGTCAATTGTATGATACCAGTCAATTATGGTTCTATAAGCAGCTAAGCTGAAC
CGTATCCCCCGTGCTCCTTCAGTCGTGGTAGCTATAGGTGGGCTTTAACTGTTGGTTACTTCACC
CACCCACCCGCCTCCACACCGTACAACATACACCACCAATACCACCAAAACCTAACACACTACAA
CTGCCACACTCTAGGCGTTGGGGGGGTCTGGGGGGGCGCCGCTCGCGGCCCCCCCAGTTGCAACT
CTACGTTTTGTGGCCCCCGTATAAGTATTGTTTATGGTACTGGCC
Found at i:100527 original size:18 final size:18
Alignment explanation
Indices: 100496--100531 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
100486 GTTGGGACCA
* *
100496 GTATGGTACGAGTCAATT
1 GTATGATACCAGTCAATT
100514 GTATGATACCAGTCAATT
1 GTATGATACCAGTCAATT
100532 ATGGTTCTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.14, G:0.22, T:0.33
Consensus pattern (18 bp):
GTATGATACCAGTCAATT
Left flanking sequence: Indices 99996 -- 100495
CACCTATTTCAAGCTCAAGCGCAACCAGCGCGAGGACGACTTTAAGATCGACTACAGCGGGGTGG
TGGCCGAGGTGCAGGCGGCGCGGAAGGCGGTCGAGCCGCGGCGGAAGCGCGAGAAGCGGGAGAAG
CGGGAGAAGCGGGAGAAGCGGCCCAAGTTGTTGGAGTACAAGGGGGAGAATGACAACTTGAAGGA
CGAATTGAAGGATCCTATGGGGGGTGATGACTTGAAGGACCCGATGGCGGGGTTGGACGATTTGA
AGGACCCGATGGCGGGGTTGGACGACTTGTCCGACCCCATGGCCCAGTTTGAGAAGAAGTAAGAC
GTGATGGCTACACCAGTGTGGAGAAGACTTGAATTAGCCGATTGAATCAGAGTATTCGCCCGAGA
GCCATGGTATTAGGCCCATTGATGCAGCTAAGAGCCAGGTTTAGAGCTTGAAGACCGAGAAAAGA
AGAGCTAGAAGAAGGACTGGAGTCAGGTCTTACTAGTTGGGACCA
Right flanking sequence: Indices 100532 -- 101031
ATGGTTCTATAAGCAGCTAAGCTGAACCGTATCCCCCGTGCTCCTTCAGTCGTGGTAGCTATAGG
TGGGCTTTAACTGTTGGTTACTTCACCCACCCACCCGCCTCCACACCGTACAACATACACCACCA
ATACCACCAAAACCTAACACACTACAACTGCCACACTCTAGGCGTTGGGGGGGTCTGGGGGGGCG
CCGCTCGCGGCCCCCCCAGTTGCAACTCTACGTTTTGTGGCCCCCGTATAAGTATTGTTTATGGT
ACTGGCCATAGACTAGCCAATTGTCTGGTGATAGCCCAGAGTGTGATGCTAGTCAATTCTATGGC
CCTAGCCAATTGTATGATAATAGATCTAGCTTGACTCCACCAAGTGATGAACCGGGCTCTGATCA
AGAGGCCGTGTCTCTATTCAATTCATTCTTAATATTACGTATTATCATATTACTTTTAAATAAAC
CAAGGTCACATAATAATGGTGTTGTCTAAAACCTGGTATATTGGT
Found at i:103952 original size:9 final size:9
Alignment explanation
Indices: 103940--103964 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
103930 AGCCCGCGGG
103940 GGCGGTGTT
1 GGCGGTGTT
103949 GGCGGTGTT
1 GGCGGTGTT
103958 GGCGGTG
1 GGCGGTG
103965 GCGGCGGGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.00, C:0.12, G:0.60, T:0.28
Consensus pattern (9 bp):
GGCGGTGTT
Left flanking sequence: Indices 103440 -- 103939
TCGCGGAGCTGGGTGCGGCGCTGTTTCCAGTCGATGGAGATGTTGGCGCCGATGAACCGGTCAAA
GTCCGCCAGCGCCGCGGCCAACAGCTGCTCGATGGTGGCCAACACGTTGTCGTCCTTTTTCGCGG
CGATGAAGTGGTCCAAGTCGCCGGCGGCCGCTGGGTACTCGGCCAGCGGGTGCGCGGGCAGCACC
GCCTGGAGCGCGCTCAACTCGTTCTCCATGGTCTCGGCGTTGATGCCCGACCCGGCAAGGAGGTA
GTGGGCCTTGGTGAAGTTGGCGGGCGCGTCCTTGGCGGCGCGCTGCGACTGGCGTTGCAACTCGC
CGAGCGTCAAGTGGATGGCGCCCAAGTCGACGTTGGCGGCCTTGGGGAGGTTGTGTGCCGACAGC
ACCAAGTCCTTGAGGACCTTGTTGGAGTTGGAGCTGGAGGAGTTGGCCAAAAGCGACGCCAAGTC
GGCTCCCGAGGGGTTGGCGAGGGTGGTGGCCGCCGAGCCCGCGGG
Right flanking sequence: Indices 103965 -- 104464
GCGGCGGGGGCCGTGGTGTTGGTGGTGTTGCCTCCAAACAACGACGGTTTCGCCGCGGTGTTGGT
GGCGGTGTTGGTGGCGGTGTTGCCGCCAAACAACGACGGTTTGGCCGCGGTGGACGAATTGGCGC
CAAACAACCCGGTGGACGGCTGAGAAGGCGCGGTCCCCGAGCTGGCATTGCCGCCAAACAACCCC
GTGGACGGCTGTGCGGAGTTGTTGCCAAACAACCCTGTGCTCGGTTTCGCGGTGTTGGCGGAGTT
TGCGCCGAAGGAGAAGCCCAGCGACGCAGCGCCCGGGTTGGCGGACGCATTGGGCGCCGCAGCAG
CGCCCTGGGAGGCGCCCGTGCCAAACGACGACGTCTTGTTGGCTCCAAACATCGATCGGTTGCGG
GTTGTTGATTATTTGCCCTGAAAAAACCCGCTGAGGGTTACCCTGCCCGATCCCGGCTGTGTGCA
GTACGACTGTAGGCGGTGTATAAAAGCGCGCGATGGCGCTGGCAA
Found at i:104036 original size:12 final size:12
Alignment explanation
Indices: 104019--104051 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
104009 CGGTTTCGCC
104019 GCGGTGTTGGTG
1 GCGGTGTTGGTG
104031 GCGGTGTTGGTG
1 GCGGTGTTGGTG
104043 GCGGTGTTG
1 GCGGTGTTG
104052 CCGCCAAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.00, C:0.09, G:0.58, T:0.33
Consensus pattern (12 bp):
GCGGTGTTGGTG
Left flanking sequence: Indices 103519 -- 104018
CGGCCAACAGCTGCTCGATGGTGGCCAACACGTTGTCGTCCTTTTTCGCGGCGATGAAGTGGTCC
AAGTCGCCGGCGGCCGCTGGGTACTCGGCCAGCGGGTGCGCGGGCAGCACCGCCTGGAGCGCGCT
CAACTCGTTCTCCATGGTCTCGGCGTTGATGCCCGACCCGGCAAGGAGGTAGTGGGCCTTGGTGA
AGTTGGCGGGCGCGTCCTTGGCGGCGCGCTGCGACTGGCGTTGCAACTCGCCGAGCGTCAAGTGG
ATGGCGCCCAAGTCGACGTTGGCGGCCTTGGGGAGGTTGTGTGCCGACAGCACCAAGTCCTTGAG
GACCTTGTTGGAGTTGGAGCTGGAGGAGTTGGCCAAAAGCGACGCCAAGTCGGCTCCCGAGGGGT
TGGCGAGGGTGGTGGCCGCCGAGCCCGCGGGGGCGGTGTTGGCGGTGTTGGCGGTGGCGGCGGGG
GCCGTGGTGTTGGTGGTGTTGCCTCCAAACAACGACGGTTTCGCC
Right flanking sequence: Indices 104052 -- 104551
CCGCCAAACAACGACGGTTTGGCCGCGGTGGACGAATTGGCGCCAAACAACCCGGTGGACGGCTG
AGAAGGCGCGGTCCCCGAGCTGGCATTGCCGCCAAACAACCCCGTGGACGGCTGTGCGGAGTTGT
TGCCAAACAACCCTGTGCTCGGTTTCGCGGTGTTGGCGGAGTTTGCGCCGAAGGAGAAGCCCAGC
GACGCAGCGCCCGGGTTGGCGGACGCATTGGGCGCCGCAGCAGCGCCCTGGGAGGCGCCCGTGCC
AAACGACGACGTCTTGTTGGCTCCAAACATCGATCGGTTGCGGGTTGTTGATTATTTGCCCTGAA
AAAACCCGCTGAGGGTTACCCTGCCCGATCCCGGCTGTGTGCAGTACGACTGTAGGCGGTGTATA
AAAGCGCGCGATGGCGCTGGCAAAAAGACAACTTTGTCCAAAGTTGATCCATCTTATAGACAGTG
CGTTGATACGGTCTTCGGGGCTACTAGGACTCGCGCTCGGTTCTC
Found at i:104786 original size:19 final size:19
Alignment explanation
Indices: 104764--104811 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
104754 GAGTTTTGTG
104764 GGTGTAATTTAGTTTCACT
1 GGTGTAATTTAGTTTCACT
* * *
104783 GGTGTAAGTGAGTTTGACT
1 GGTGTAATTTAGTTTCACT
104802 GGTGT-ATTTA
1 GGTGTAATTTA
104812 TTGAGTTCCA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
18 3 0.12
19 21 0.88
ACGTcount: A:0.21, C:0.06, G:0.29, T:0.44
Consensus pattern (19 bp):
GGTGTAATTTAGTTTCACT
Left flanking sequence: Indices 104264 -- 104763
GGCGGACGCATTGGGCGCCGCAGCAGCGCCCTGGGAGGCGCCCGTGCCAAACGACGACGTCTTGT
TGGCTCCAAACATCGATCGGTTGCGGGTTGTTGATTATTTGCCCTGAAAAAACCCGCTGAGGGTT
ACCCTGCCCGATCCCGGCTGTGTGCAGTACGACTGTAGGCGGTGTATAAAAGCGCGCGATGGCGC
TGGCAAAAAGACAACTTTGTCCAAAGTTGATCCATCTTATAGACAGTGCGTTGATACGGTCTTCG
GGGCTACTAGGACTCGCGCTCGGTTCTCGGGTGGGGTCCAGACGGTGGCGCCGGGCAACACCTAT
CGTTGATTACGCGATAACTGATGGAGAGAGTGAACTGTGCTTAAAAGAACTTGTCTGGAATACTT
GTATTATGAAAGAGAGGTGTCAGAAGGTACAAACATTTTAACGTAGATGTTCTGTTGGGGAGGGT
TTGAGTTTCACGACGAATGGGGTGAGTGGTACGGGGAGTTTTGTG
Right flanking sequence: Indices 104812 -- 105311
TTGAGTTCCACTGGTGTATTTAATGAGTTCCACCAGTGTAAGTTACAAGTTCTAAGGTTTAGTTT
CAAGTTCTGAGGTTTAGTTATAAGACCTGAGGTTTGGTTATAAGACCCGTGGTTTGTTTCTAAGT
CCTGAGGTGCAGTTATAGGTACAACGGTTAGGTATGTACTGCGGTTTAAGTCAGGGGTATCACGA
TTCATCCACTCACAACGCGGATGTTGCAAGAACCATCGTCATCCGGGTCTAGCGTCGCGTCAAGA
AGCTCCTCAATATCAGTTTCGCTATCTAGATCGATTTGAGCAAACACCATGTCCTTCAGTTGACT
GATGGCCATAAATTCGTAAAAGGCTGCATCGTCCAAAATGTTCGGACACAGCGATCGGTATAACT
TGAGAATCCCCAACTGGGTGTTCTCTATAAAATCTCGGAGGGTTTCAGCGGTCAACTCGAGTACG
GGAGTGCCCGTACGCACAAAGTTGACCAATGACTCGAGGTTACAT
Found at i:104824 original size:22 final size:22
Alignment explanation
Indices: 104799--104844 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
104789 AGTGAGTTTG
*
104799 ACTGGTGTATTTATTGAGTTCC
1 ACTGGTGTATTTAATGAGTTCC
104821 ACTGGTGTATTTAATGAGTTCC
1 ACTGGTGTATTTAATGAGTTCC
104843 AC
1 AC
104845 CAGTGTAAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.22, C:0.15, G:0.22, T:0.41
Consensus pattern (22 bp):
ACTGGTGTATTTAATGAGTTCC
Left flanking sequence: Indices 104299 -- 104798
AGGCGCCCGTGCCAAACGACGACGTCTTGTTGGCTCCAAACATCGATCGGTTGCGGGTTGTTGAT
TATTTGCCCTGAAAAAACCCGCTGAGGGTTACCCTGCCCGATCCCGGCTGTGTGCAGTACGACTG
TAGGCGGTGTATAAAAGCGCGCGATGGCGCTGGCAAAAAGACAACTTTGTCCAAAGTTGATCCAT
CTTATAGACAGTGCGTTGATACGGTCTTCGGGGCTACTAGGACTCGCGCTCGGTTCTCGGGTGGG
GTCCAGACGGTGGCGCCGGGCAACACCTATCGTTGATTACGCGATAACTGATGGAGAGAGTGAAC
TGTGCTTAAAAGAACTTGTCTGGAATACTTGTATTATGAAAGAGAGGTGTCAGAAGGTACAAACA
TTTTAACGTAGATGTTCTGTTGGGGAGGGTTTGAGTTTCACGACGAATGGGGTGAGTGGTACGGG
GAGTTTTGTGGGTGTAATTTAGTTTCACTGGTGTAAGTGAGTTTG
Right flanking sequence: Indices 104845 -- 105344
CAGTGTAAGTTACAAGTTCTAAGGTTTAGTTTCAAGTTCTGAGGTTTAGTTATAAGACCTGAGGT
TTGGTTATAAGACCCGTGGTTTGTTTCTAAGTCCTGAGGTGCAGTTATAGGTACAACGGTTAGGT
ATGTACTGCGGTTTAAGTCAGGGGTATCACGATTCATCCACTCACAACGCGGATGTTGCAAGAAC
CATCGTCATCCGGGTCTAGCGTCGCGTCAAGAAGCTCCTCAATATCAGTTTCGCTATCTAGATCG
ATTTGAGCAAACACCATGTCCTTCAGTTGACTGATGGCCATAAATTCGTAAAAGGCTGCATCGTC
CAAAATGTTCGGACACAGCGATCGGTATAACTTGAGAATCCCCAACTGGGTGTTCTCTATAAAAT
CTCGGAGGGTTTCAGCGGTCAACTCGAGTACGGGAGTGCCCGTACGCACAAAGTTGACCAATGAC
TCGAGGTTACATGGACCGTCGTAAAACACAGGTTTTCGCCAACCA
Found at i:104850 original size:22 final size:22
Alignment explanation
Indices: 104803--104851 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
104793 AGTTTGACTG
* **
104803 GTGTATTTATTGAGTTCCACTG
1 GTGTATTTAATGAGTTCCACCA
104825 GTGTATTTAATGAGTTCCACCA
1 GTGTATTTAATGAGTTCCACCA
104847 GTGTA
1 GTGTA
104852 AGTTACAAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.22, C:0.14, G:0.22, T:0.41
Consensus pattern (22 bp):
GTGTATTTAATGAGTTCCACCA
Left flanking sequence: Indices 104303 -- 104802
GCCCGTGCCAAACGACGACGTCTTGTTGGCTCCAAACATCGATCGGTTGCGGGTTGTTGATTATT
TGCCCTGAAAAAACCCGCTGAGGGTTACCCTGCCCGATCCCGGCTGTGTGCAGTACGACTGTAGG
CGGTGTATAAAAGCGCGCGATGGCGCTGGCAAAAAGACAACTTTGTCCAAAGTTGATCCATCTTA
TAGACAGTGCGTTGATACGGTCTTCGGGGCTACTAGGACTCGCGCTCGGTTCTCGGGTGGGGTCC
AGACGGTGGCGCCGGGCAACACCTATCGTTGATTACGCGATAACTGATGGAGAGAGTGAACTGTG
CTTAAAAGAACTTGTCTGGAATACTTGTATTATGAAAGAGAGGTGTCAGAAGGTACAAACATTTT
AACGTAGATGTTCTGTTGGGGAGGGTTTGAGTTTCACGACGAATGGGGTGAGTGGTACGGGGAGT
TTTGTGGGTGTAATTTAGTTTCACTGGTGTAAGTGAGTTTGACTG
Right flanking sequence: Indices 104852 -- 105351
AGTTACAAGTTCTAAGGTTTAGTTTCAAGTTCTGAGGTTTAGTTATAAGACCTGAGGTTTGGTTA
TAAGACCCGTGGTTTGTTTCTAAGTCCTGAGGTGCAGTTATAGGTACAACGGTTAGGTATGTACT
GCGGTTTAAGTCAGGGGTATCACGATTCATCCACTCACAACGCGGATGTTGCAAGAACCATCGTC
ATCCGGGTCTAGCGTCGCGTCAAGAAGCTCCTCAATATCAGTTTCGCTATCTAGATCGATTTGAG
CAAACACCATGTCCTTCAGTTGACTGATGGCCATAAATTCGTAAAAGGCTGCATCGTCCAAAATG
TTCGGACACAGCGATCGGTATAACTTGAGAATCCCCAACTGGGTGTTCTCTATAAAATCTCGGAG
GGTTTCAGCGGTCAACTCGAGTACGGGAGTGCCCGTACGCACAAAGTTGACCAATGACTCGAGGT
TACATGGACCGTCGTAAAACACAGGTTTTCGCCAACCAGTCCGCT
Found at i:104880 original size:20 final size:20
Alignment explanation
Indices: 104852--104896 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
104842 CACCAGTGTA
104852 AGTTACAAGTTCTAAGGTTT
1 AGTTACAAGTTCTAAGGTTT
* *
104872 AGTTTCAAGTTCTGAGGTTT
1 AGTTACAAGTTCTAAGGTTT
104892 AGTTA
1 AGTTA
104897 TAAGACCTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.27, C:0.09, G:0.22, T:0.42
Consensus pattern (20 bp):
AGTTACAAGTTCTAAGGTTT
Left flanking sequence: Indices 104352 -- 104851
CGGGTTGTTGATTATTTGCCCTGAAAAAACCCGCTGAGGGTTACCCTGCCCGATCCCGGCTGTGT
GCAGTACGACTGTAGGCGGTGTATAAAAGCGCGCGATGGCGCTGGCAAAAAGACAACTTTGTCCA
AAGTTGATCCATCTTATAGACAGTGCGTTGATACGGTCTTCGGGGCTACTAGGACTCGCGCTCGG
TTCTCGGGTGGGGTCCAGACGGTGGCGCCGGGCAACACCTATCGTTGATTACGCGATAACTGATG
GAGAGAGTGAACTGTGCTTAAAAGAACTTGTCTGGAATACTTGTATTATGAAAGAGAGGTGTCAG
AAGGTACAAACATTTTAACGTAGATGTTCTGTTGGGGAGGGTTTGAGTTTCACGACGAATGGGGT
GAGTGGTACGGGGAGTTTTGTGGGTGTAATTTAGTTTCACTGGTGTAAGTGAGTTTGACTGGTGT
ATTTATTGAGTTCCACTGGTGTATTTAATGAGTTCCACCAGTGTA
Right flanking sequence: Indices 104897 -- 105396
TAAGACCTGAGGTTTGGTTATAAGACCCGTGGTTTGTTTCTAAGTCCTGAGGTGCAGTTATAGGT
ACAACGGTTAGGTATGTACTGCGGTTTAAGTCAGGGGTATCACGATTCATCCACTCACAACGCGG
ATGTTGCAAGAACCATCGTCATCCGGGTCTAGCGTCGCGTCAAGAAGCTCCTCAATATCAGTTTC
GCTATCTAGATCGATTTGAGCAAACACCATGTCCTTCAGTTGACTGATGGCCATAAATTCGTAAA
AGGCTGCATCGTCCAAAATGTTCGGACACAGCGATCGGTATAACTTGAGAATCCCCAACTGGGTG
TTCTCTATAAAATCTCGGAGGGTTTCAGCGGTCAACTCGAGTACGGGAGTGCCCGTACGCACAAA
GTTGACCAATGACTCGAGGTTACATGGACCGTCGTAAAACACAGGTTTTCGCCAACCAGTCCGCT
TAGACGTCTCACCGTTAGCGGGGTACAAAACAAGGCAATCCGTCT
Found at i:104906 original size:20 final size:20
Alignment explanation
Indices: 104883--104923 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
104873 GTTTCAAGTT
104883 CTGAGGTTTAGTTATAAGAC
1 CTGAGGTTTAGTTATAAGAC
*
104903 CTGAGGTTTGGTTATAAGAC
1 CTGAGGTTTAGTTATAAGAC
104923 C
1 C
104924 CGTGGTTTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (20 bp):
CTGAGGTTTAGTTATAAGAC
Left flanking sequence: Indices 104383 -- 104882
CGCTGAGGGTTACCCTGCCCGATCCCGGCTGTGTGCAGTACGACTGTAGGCGGTGTATAAAAGCG
CGCGATGGCGCTGGCAAAAAGACAACTTTGTCCAAAGTTGATCCATCTTATAGACAGTGCGTTGA
TACGGTCTTCGGGGCTACTAGGACTCGCGCTCGGTTCTCGGGTGGGGTCCAGACGGTGGCGCCGG
GCAACACCTATCGTTGATTACGCGATAACTGATGGAGAGAGTGAACTGTGCTTAAAAGAACTTGT
CTGGAATACTTGTATTATGAAAGAGAGGTGTCAGAAGGTACAAACATTTTAACGTAGATGTTCTG
TTGGGGAGGGTTTGAGTTTCACGACGAATGGGGTGAGTGGTACGGGGAGTTTTGTGGGTGTAATT
TAGTTTCACTGGTGTAAGTGAGTTTGACTGGTGTATTTATTGAGTTCCACTGGTGTATTTAATGA
GTTCCACCAGTGTAAGTTACAAGTTCTAAGGTTTAGTTTCAAGTT
Right flanking sequence: Indices 104924 -- 105423
CGTGGTTTGTTTCTAAGTCCTGAGGTGCAGTTATAGGTACAACGGTTAGGTATGTACTGCGGTTT
AAGTCAGGGGTATCACGATTCATCCACTCACAACGCGGATGTTGCAAGAACCATCGTCATCCGGG
TCTAGCGTCGCGTCAAGAAGCTCCTCAATATCAGTTTCGCTATCTAGATCGATTTGAGCAAACAC
CATGTCCTTCAGTTGACTGATGGCCATAAATTCGTAAAAGGCTGCATCGTCCAAAATGTTCGGAC
ACAGCGATCGGTATAACTTGAGAATCCCCAACTGGGTGTTCTCTATAAAATCTCGGAGGGTTTCA
GCGGTCAACTCGAGTACGGGAGTGCCCGTACGCACAAAGTTGACCAATGACTCGAGGTTACATGG
ACCGTCGTAAAACACAGGTTTTCGCCAACCAGTCCGCTTAGACGTCTCACCGTTAGCGGGGTACA
AAACAAGGCAATCCGTCTCCATAAATACAGGATACGGATCTACCA
Found at i:104940 original size:20 final size:20
Alignment explanation
Indices: 104885--104932 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
104875 TTCAAGTTCT
* *
104885 GAGGTTTAGTTATAAGACCT
1 GAGGTTTGGTTATAAGACCC
104905 GAGGTTTGGTTATAAGACCC
1 GAGGTTTGGTTATAAGACCC
*
104925 GTGGTTTG
1 GAGGTTTG
104933 TTTCTAAGTC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.23, C:0.10, G:0.31, T:0.35
Consensus pattern (20 bp):
GAGGTTTGGTTATAAGACCC
Left flanking sequence: Indices 104385 -- 104884
CTGAGGGTTACCCTGCCCGATCCCGGCTGTGTGCAGTACGACTGTAGGCGGTGTATAAAAGCGCG
CGATGGCGCTGGCAAAAAGACAACTTTGTCCAAAGTTGATCCATCTTATAGACAGTGCGTTGATA
CGGTCTTCGGGGCTACTAGGACTCGCGCTCGGTTCTCGGGTGGGGTCCAGACGGTGGCGCCGGGC
AACACCTATCGTTGATTACGCGATAACTGATGGAGAGAGTGAACTGTGCTTAAAAGAACTTGTCT
GGAATACTTGTATTATGAAAGAGAGGTGTCAGAAGGTACAAACATTTTAACGTAGATGTTCTGTT
GGGGAGGGTTTGAGTTTCACGACGAATGGGGTGAGTGGTACGGGGAGTTTTGTGGGTGTAATTTA
GTTTCACTGGTGTAAGTGAGTTTGACTGGTGTATTTATTGAGTTCCACTGGTGTATTTAATGAGT
TCCACCAGTGTAAGTTACAAGTTCTAAGGTTTAGTTTCAAGTTCT
Right flanking sequence: Indices 104933 -- 105432
TTTCTAAGTCCTGAGGTGCAGTTATAGGTACAACGGTTAGGTATGTACTGCGGTTTAAGTCAGGG
GTATCACGATTCATCCACTCACAACGCGGATGTTGCAAGAACCATCGTCATCCGGGTCTAGCGTC
GCGTCAAGAAGCTCCTCAATATCAGTTTCGCTATCTAGATCGATTTGAGCAAACACCATGTCCTT
CAGTTGACTGATGGCCATAAATTCGTAAAAGGCTGCATCGTCCAAAATGTTCGGACACAGCGATC
GGTATAACTTGAGAATCCCCAACTGGGTGTTCTCTATAAAATCTCGGAGGGTTTCAGCGGTCAAC
TCGAGTACGGGAGTGCCCGTACGCACAAAGTTGACCAATGACTCGAGGTTACATGGACCGTCGTA
AAACACAGGTTTTCGCCAACCAGTCCGCTTAGACGTCTCACCGTTAGCGGGGTACAAAACAAGGC
AATCCGTCTCCATAAATACAGGATACGGATCTACCATACCACATT
Found at i:107990 original size:18 final size:18
Alignment explanation
Indices: 107967--108021 Score: 101
Period size: 18 Copynumber: 3.1 Consensus size: 18
107957 GATAAATTAT
107967 ATGTCTCAGTCTACCTCG
1 ATGTCTCAGTCTACCTCG
107985 ATGTCTCAGTCTACCTCG
1 ATGTCTCAGTCTACCTCG
*
108003 ATGTTTCAGTCTACCTCG
1 ATGTCTCAGTCTACCTCG
108021 A
1 A
108022 CGGGTTTGAC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.18, C:0.31, G:0.16, T:0.35
Consensus pattern (18 bp):
ATGTCTCAGTCTACCTCG
Left flanking sequence: Indices 107467 -- 107966
AATCCGGATACTCTTCCGCATCCACGGCATACAACTCGATTGCGGGGTGTGACTGGTGTAATTGG
GCCGCCGCCCGTGCGTACTTGTGAAGGAAACGCTTACTTTTTGGAACACTCGGAAGCACGCATGC
AACGACCAGCCAGGGTCCTTCTTCAAGTAATTTTTCGTACTCTTTTGTATCGGTTATCCATTTGA
TATGCCCCGATCTAAACATTTCGCTTCAATTGTGGGGTGATCTATGATATGTTAACCGACGCGTA
GGGTGTGGAGGATCTCGGCTTTTTCTATCTGCGAAAATACGAAGTGACACAATAGATTTGTGGAG
TCAGGTGACAAGACTCACAAGCGGCTGAAGTCGATAGTCTCAGGGTCTGTTTGACGCTTTGCACC
CCAAGTGAAGAGTAGACCAAAACCAAACAGACCTCCTCTATTCATTATTCTGCCTCTGTTCTGGA
CGATGTCTTATTAAACTAGCTTTCTAGCATGAATTGATAAATTAT
Right flanking sequence: Indices 108022 -- 108521
CGGGTTTGACCCGGTTGGCCGCGGGGTGCCGTCCTCGTGGGTCCACGACGTCGTGCGCTCTCCGG
GCACCGTGTCGTCGTCGTCCTCTTCCTCTTCTTCGTCTGAGAAATCGGGCACGGTGGTCTTGCGC
CGCTGGAAGTCCTTGATATGGGCCTTGTTGAGGCGGTCGCCAATGACAAAGAGCGTTGACTTGCG
CCGGCCAAGCGGGGCTCCAATCTCCAGAGGCTCCAGCTGGGCGGCCGACAGCGCTCTGCGGTGCC
GGGTGAGCGCGGGCTCGGTGGCCAAGTCGTGGCTCTCGGTGTGCTGGATGTAGTGCAACTCCACG
AGCTTGGCAATCGCCTTTTCCACGCGGGTCGACACCGGGTAGGGGAGGGGAGTGTCCTTGGAGGC
ACGGAAGAGCACCACGTTGGTGGAGTGTTCGTTCTCCATCCGGAAAAACACCCAGATGAACCGCC
GGGTGATCTCGGCAAGCGCAATGCAGAACGAGGTCACCGCCAGCT
Found at i:111019 original size:11 final size:10
Alignment explanation
Indices: 110990--111058 Score: 63
Period size: 11 Copynumber: 6.9 Consensus size: 10
110980 GGCCGGGGAT
*
110990 AACAGGGTGA
1 AACAGGGTGG
111000 AAC-GGGTGG
1 AACAGGGTGG
111009 AATCAGGGTGG
1 AA-CAGGGTGG
111020 AATCAGGGT-G
1 AA-CAGGGTGG
*
111030 AA-AGAGTGG
1 AACAGGGTGG
*
111039 AAACAGGGTGT
1 -AACAGGGTGG
111050 AACAGGGTG
1 AACAGGGTG
111059 TAAACTAGTG
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
8 4 0.08
9 8 0.16
10 18 0.36
11 20 0.40
ACGTcount: A:0.33, C:0.09, G:0.43, T:0.14
Consensus pattern (10 bp):
AACAGGGTGG
Left flanking sequence: Indices 110490 -- 110989
CGGTGTACCCGGGAGCGGCCTGGAGCGGCTCCAACAACGGGGTGACGTCGGTGGCGGGCTCGGCG
TTGACCTCGCGACGGGCCGCGGTGCATTTCTTCACGAGCTTCTTGCCCACTCGGTAGTCCACGTA
CTGGCCCTTCCACTCGGGCACGAGGCCGTCCTCGAGGGACTCCCCAAATTTCATTGTTGGTGATA
ATGCACGGAGTTAGCGATAGCCGTTGATTGCCGCACCAACAGACAAAAACAACGGTGGGCGTGGG
CACAAAGAGCGCGGGTGGTGGGGTGTGGAGGTGGTAGGGCCGTGCGGCTGGCGGGCAGTAGTGCA
GTTGGGTTCCACGTGGGGTGCTGGAACCGGAATGTGCTCGGGCGATGGTAGCCACCGGTTATGGA
CGCTGGGAGATCAGGGGACACCACGCGGAACAGGGAGGCTTGAGAGGCAATTGGAGACGACGGAT
GGGGTCATGGGGAGCAGCGTGCGATTGGCGGGCACGGCCGGGGAT
Right flanking sequence: Indices 111059 -- 111558
TAAACTAGTGTGCAGCATGAGCCAATCCGGTAGGCGCTACCGAGACAGGTTAATGGTAGGGATAT
CAACGGTAGGGATCAATTGTAGGGATCAATTGTATGGATCAACGGTAGGAACGGCCGCTCTTGTG
TAGCCACCATGGCCTGCGGACCGTGCAGATTGTGTCTTGCCTAAACTTGTGCACTACTGTACGCC
CCAGTCTCCGCTCCATGAGCCCACAATATACGACCCTCGCTACACATAACCGTTTAGTGGTTCCT
ACGCCGACCACAAGGGACACGGCCACAATCAGCGGCCCTGGGGCCAAAAAAATAAGATGGTGTCC
GGAACCAGCGGCTGTGGTCCCACGACACCGGTCGTATGTTTTATTATTGGCGGCAGGCTCCTTCC
CGCACATTCCGGACGGGGCCTGCCTCGTATACGTAGGGTCTACTGCCACACTTCCGCCCAGCCAG
CGTCCGTACCCACCTTCCCCTCGTGGTGGCACCCACACCCGTGCG
Found at i:111046 original size:30 final size:30
Alignment explanation
Indices: 110990--111068 Score: 97
Period size: 30 Copynumber: 2.6 Consensus size: 30
110980 GGCCGGGGAT
* *
110990 AACAGGGTGAAACGGGTGGAATCAGGGTGG
1 AACAGGGTGAAACGAGTGGAAACAGGGTGG
*
111020 AATCAGGGTGAAA-GAGTGGAAACAGGGTGT
1 AA-CAGGGTGAAACGAGTGGAAACAGGGTGG
*
111050 AACAGGGTGTAAACTAGTG
1 AACAGGGTG-AAACGAGTG
111069 TGCAGCATGA
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
29 7 0.17
30 21 0.50
31 14 0.33
ACGTcount: A:0.34, C:0.09, G:0.41, T:0.16
Consensus pattern (30 bp):
AACAGGGTGAAACGAGTGGAAACAGGGTGG
Left flanking sequence: Indices 110490 -- 110989
CGGTGTACCCGGGAGCGGCCTGGAGCGGCTCCAACAACGGGGTGACGTCGGTGGCGGGCTCGGCG
TTGACCTCGCGACGGGCCGCGGTGCATTTCTTCACGAGCTTCTTGCCCACTCGGTAGTCCACGTA
CTGGCCCTTCCACTCGGGCACGAGGCCGTCCTCGAGGGACTCCCCAAATTTCATTGTTGGTGATA
ATGCACGGAGTTAGCGATAGCCGTTGATTGCCGCACCAACAGACAAAAACAACGGTGGGCGTGGG
CACAAAGAGCGCGGGTGGTGGGGTGTGGAGGTGGTAGGGCCGTGCGGCTGGCGGGCAGTAGTGCA
GTTGGGTTCCACGTGGGGTGCTGGAACCGGAATGTGCTCGGGCGATGGTAGCCACCGGTTATGGA
CGCTGGGAGATCAGGGGACACCACGCGGAACAGGGAGGCTTGAGAGGCAATTGGAGACGACGGAT
GGGGTCATGGGGAGCAGCGTGCGATTGGCGGGCACGGCCGGGGAT
Right flanking sequence: Indices 111069 -- 111568
TGCAGCATGAGCCAATCCGGTAGGCGCTACCGAGACAGGTTAATGGTAGGGATATCAACGGTAGG
GATCAATTGTAGGGATCAATTGTATGGATCAACGGTAGGAACGGCCGCTCTTGTGTAGCCACCAT
GGCCTGCGGACCGTGCAGATTGTGTCTTGCCTAAACTTGTGCACTACTGTACGCCCCAGTCTCCG
CTCCATGAGCCCACAATATACGACCCTCGCTACACATAACCGTTTAGTGGTTCCTACGCCGACCA
CAAGGGACACGGCCACAATCAGCGGCCCTGGGGCCAAAAAAATAAGATGGTGTCCGGAACCAGCG
GCTGTGGTCCCACGACACCGGTCGTATGTTTTATTATTGGCGGCAGGCTCCTTCCCGCACATTCC
GGACGGGGCCTGCCTCGTATACGTAGGGTCTACTGCCACACTTCCGCCCAGCCAGCGTCCGTACC
CACCTTCCCCTCGTGGTGGCACCCACACCCGTGCGGTAGCCAACG
Found at i:111055 original size:10 final size:10
Alignment explanation
Indices: 110989--111061 Score: 53
Period size: 10 Copynumber: 7.3 Consensus size: 10
110979 CGGCCGGGGA
110989 TAACAGGGTG
1 TAACAGGGTG
*
110999 AAAC-GGGTG
1 TAACAGGGTG
*
111008 GAATCAGGGTG
1 TAA-CAGGGTG
*
111019 GAATCAGGGTG
1 TAA-CAGGGTG
*
111030 -AA-AGAGTGG
1 TAACAGGGT-G
*
111039 AAACAGGGTG
1 TAACAGGGTG
111049 TAACAGGGTG
1 TAACAGGGTG
111059 TAA
1 TAA
111062 ACTAGTGTGC
Statistics
Matches: 53, Mismatches: 5, Indels: 10
0.78 0.07 0.15
Matches are distributed among these distances:
8 4 0.08
9 8 0.15
10 21 0.40
11 20 0.38
ACGTcount: A:0.34, C:0.08, G:0.41, T:0.16
Consensus pattern (10 bp):
TAACAGGGTG
Left flanking sequence: Indices 110489 -- 110988
TCGGTGTACCCGGGAGCGGCCTGGAGCGGCTCCAACAACGGGGTGACGTCGGTGGCGGGCTCGGC
GTTGACCTCGCGACGGGCCGCGGTGCATTTCTTCACGAGCTTCTTGCCCACTCGGTAGTCCACGT
ACTGGCCCTTCCACTCGGGCACGAGGCCGTCCTCGAGGGACTCCCCAAATTTCATTGTTGGTGAT
AATGCACGGAGTTAGCGATAGCCGTTGATTGCCGCACCAACAGACAAAAACAACGGTGGGCGTGG
GCACAAAGAGCGCGGGTGGTGGGGTGTGGAGGTGGTAGGGCCGTGCGGCTGGCGGGCAGTAGTGC
AGTTGGGTTCCACGTGGGGTGCTGGAACCGGAATGTGCTCGGGCGATGGTAGCCACCGGTTATGG
ACGCTGGGAGATCAGGGGACACCACGCGGAACAGGGAGGCTTGAGAGGCAATTGGAGACGACGGA
TGGGGTCATGGGGAGCAGCGTGCGATTGGCGGGCACGGCCGGGGA
Right flanking sequence: Indices 111062 -- 111561
ACTAGTGTGCAGCATGAGCCAATCCGGTAGGCGCTACCGAGACAGGTTAATGGTAGGGATATCAA
CGGTAGGGATCAATTGTAGGGATCAATTGTATGGATCAACGGTAGGAACGGCCGCTCTTGTGTAG
CCACCATGGCCTGCGGACCGTGCAGATTGTGTCTTGCCTAAACTTGTGCACTACTGTACGCCCCA
GTCTCCGCTCCATGAGCCCACAATATACGACCCTCGCTACACATAACCGTTTAGTGGTTCCTACG
CCGACCACAAGGGACACGGCCACAATCAGCGGCCCTGGGGCCAAAAAAATAAGATGGTGTCCGGA
ACCAGCGGCTGTGGTCCCACGACACCGGTCGTATGTTTTATTATTGGCGGCAGGCTCCTTCCCGC
ACATTCCGGACGGGGCCTGCCTCGTATACGTAGGGTCTACTGCCACACTTCCGCCCAGCCAGCGT
CCGTACCCACCTTCCCCTCGTGGTGGCACCCACACCCGTGCGGTA
Found at i:111145 original size:13 final size:13
Alignment explanation
Indices: 111129--111165 Score: 65
Period size: 13 Copynumber: 2.8 Consensus size: 13
111119 GATATCAACG
111129 GTAGGGATCAATT
1 GTAGGGATCAATT
111142 GTAGGGATCAATT
1 GTAGGGATCAATT
*
111155 GTATGGATCAA
1 GTAGGGATCAA
111166 CGGTAGGAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (13 bp):
GTAGGGATCAATT
Left flanking sequence: Indices 110629 -- 111128
CCACTCGGGCACGAGGCCGTCCTCGAGGGACTCCCCAAATTTCATTGTTGGTGATAATGCACGGA
GTTAGCGATAGCCGTTGATTGCCGCACCAACAGACAAAAACAACGGTGGGCGTGGGCACAAAGAG
CGCGGGTGGTGGGGTGTGGAGGTGGTAGGGCCGTGCGGCTGGCGGGCAGTAGTGCAGTTGGGTTC
CACGTGGGGTGCTGGAACCGGAATGTGCTCGGGCGATGGTAGCCACCGGTTATGGACGCTGGGAG
ATCAGGGGACACCACGCGGAACAGGGAGGCTTGAGAGGCAATTGGAGACGACGGATGGGGTCATG
GGGAGCAGCGTGCGATTGGCGGGCACGGCCGGGGATAACAGGGTGAAACGGGTGGAATCAGGGTG
GAATCAGGGTGAAAGAGTGGAAACAGGGTGTAACAGGGTGTAAACTAGTGTGCAGCATGAGCCAA
TCCGGTAGGCGCTACCGAGACAGGTTAATGGTAGGGATATCAACG
Right flanking sequence: Indices 111166 -- 111665
CGGTAGGAACGGCCGCTCTTGTGTAGCCACCATGGCCTGCGGACCGTGCAGATTGTGTCTTGCCT
AAACTTGTGCACTACTGTACGCCCCAGTCTCCGCTCCATGAGCCCACAATATACGACCCTCGCTA
CACATAACCGTTTAGTGGTTCCTACGCCGACCACAAGGGACACGGCCACAATCAGCGGCCCTGGG
GCCAAAAAAATAAGATGGTGTCCGGAACCAGCGGCTGTGGTCCCACGACACCGGTCGTATGTTTT
ATTATTGGCGGCAGGCTCCTTCCCGCACATTCCGGACGGGGCCTGCCTCGTATACGTAGGGTCTA
CTGCCACACTTCCGCCCAGCCAGCGTCCGTACCCACCTTCCCCTCGTGGTGGCACCCACACCCGT
GCGGTAGCCAACGGTAGCGCGCGGGTGAAAAATACTTAGCCCGAGGCAACCGAGACACGATGATG
CGCTATTGGATGAACATGGGGTCGCCGGTGCGTCTCATGACGAGA
Found at i:130667 original size:13 final size:13
Alignment explanation
Indices: 130651--130684 Score: 68
Period size: 13 Copynumber: 2.6 Consensus size: 13
130641 AACATGGCCA
130651 TGAAACACGAAAG
1 TGAAACACGAAAG
130664 TGAAACACGAAAG
1 TGAAACACGAAAG
130677 TGAAACAC
1 TGAAACAC
130685 CTCGTGTCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.53, C:0.18, G:0.21, T:0.09
Consensus pattern (13 bp):
TGAAACACGAAAG
Left flanking sequence: Indices 130151 -- 130650
GGGATTGACGTTCATCGTCGACCGGGTCCTGGTGGACGCGAGAAAATTCGGTGCGAAAACGCGAC
GGGATGGTGGGGGAAGGGAAGAGAGCAGCGGTGAGGGGTCGGGAAATGGTGTAGATGGAATGGTG
TAGGTGGGGCGGAGAGAGGAGCAGGCATTGGTTACGGTGGTGGACTTTTGGAGGGGGTGTAGATG
CCATGCGGCTGTGCTTGGGTACGGGCTATGCGTGTAAGCCAGGCGGAGGAACGGGAAGAAAGCGC
TGAGAGATGGGGAATTTGTAGATGGAGGGTGGTTAGTGTCGGTCTCTAGTGGTCTCTAACATTTT
CTACCTGCTCTAGCCGTGGTGCTTCCCCGTGTTCCTTGGCTTGCTACCTCCCTACCCTACAATGT
GGTTAGGTCCACGCGAGTGAGGAATACGCCTAAGTAGCACGAAAGCCTGAAGTTAAAGCTAAACT
ACAGTTATGCAAAACACGAGAGAACCCGAAAGTGAAACATGGCCA
Right flanking sequence: Indices 130685 -- 131184
CTCGTGTCTCACTACCTGTAAACATGTTACCCCATTTCCCAACCCAAAAGACCCTCTTCCTTTCC
TTCTTTCATCCTATCATATAGTACATACCTAAAGGTGGTCGCGGAACCCAGCGGTCGGGTTCTGC
AAAAAGTTGTGTTCGCCCATCCGCCGGGGCTTGATCAAGTGCTGCAACAAAAACACCACCGCCAA
CACCACGCAGATCACCGCCACGATGATGTAGATGATGCCAAGGGCCATGTTGCGCCCGCCAAACG
TCAGCGACGTGGTGATCACCACCAGCTTGGTGCCGCCAAACACCTTCACCGGGTAGTACAACCCG
ATGTCCATCTCGTAGGTGCCCAGCTCCATGGTGGTGTTCTTGTTTTTCCCGTAGAGCTTGTAGAA
CTGGGGCAACCCGGCAGTCCGCATCCAGTTCTGGAAGTGCTGCCACTGCTGGAGGTCGGGCATGT
TGTCCTCGGTGTACCCGTCGGGGTACCGAAGCATCCAGTTGGGCG
Found at i:132508 original size:11 final size:11
Alignment explanation
Indices: 132494--132538 Score: 63
Period size: 11 Copynumber: 4.1 Consensus size: 11
132484 TCTCAACTCC
*
132494 ACCTCATACCT
1 ACCTCATTCCT
132505 ACCTCATTCCT
1 ACCTCATTCCT
*
132516 ACCCCATTCCT
1 ACCTCATTCCT
*
132527 ACGTCATTCCT
1 ACCTCATTCCT
132538 A
1 A
132539 TCCATCCCCA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 30 1.00
ACGTcount: A:0.22, C:0.44, G:0.02, T:0.31
Consensus pattern (11 bp):
ACCTCATTCCT
Left flanking sequence: Indices 131994 -- 132493
CGTGGTGGAAAAATTGGGCTATGCGTGGGTGAGACGGGTGGTGAGAAGACGGTCACGCGGGAGAC
AGGGGTTGAGGGGGGTGTAGAGGCGGGTGGCGCATTTACTACGGGGGAGGTGTCTATACTCTGGT
GTGTGGTTGTTTGCGTGGATACCGAAGCTGGTAGTGTCGTACACGTCCCGATTAGGTCCAACGCG
AGGCATCTACCGAGGAGGGGTAACAGCCAGAAGCGAGCAGTCACATGAGCGAGCTTCTACGATAG
ACCTGCGTGTCTTCTTGCCAGTAAATGGTTTTAATTCGTATTCGCTACTTCTGTGATTCAACACT
TTTCCTATTACTCTCACCAGCCACCAGCCACCAACACTCTTTTCCCTCAGCTACAAACCACTGCA
ACTCAACTAATCTACAAAACCAACGCCTTTCTTTGATGAATACCGTTTGAACAGAGTAGTTATAC
CACGTCCTCTATCTCACCCTCTATACCACCCTCTCTCTCAACTCC
Right flanking sequence: Indices 132539 -- 133038
TCCATCCCCACCTTTTCCTCCGTGTGGTATTTATTGAGTTTGCTTCTCGTATGCTAAAATTATTG
GGTGCTCCTGATCCAACCCTCCATTCACATTAGTCGTCACGTCGTTTTCGTTGGTCTCATGGTTA
ATGCATCTTTTTCTTCGGGGCGCCCGGGTTGTATCCCGTCTTGGCGTTGCCCACGGGAGTCTTGC
GCTTGTCGAACTGGGGCTTGTCCTTGGGCTTGCGCTTCACCTCAAACGCCACGTACGAGTCCTCG
ACGTCGGCGCGTCCGTCGTCAAGCGCCCGCTTCTGCGACTCGGCCGACACAAAGTCGCACACGAT
CGCCGGCCCGTGGTGCTTCCAGTACTTCACCGCGCCGTAGTTGTCGACGATGAACTGCTTGAGGG
TGTCCTCGGGGATGTTGTGGATGCCCTGGCCCTTGACCAACACCGAAAACCACTCGTTCTTGAAC
CCCTTGGTGTGCTGGGTGGTCGGGGTGGTGGCCTGGGGGGTGGTG
Found at i:133176 original size:12 final size:12
Alignment explanation
Indices: 133159--133189 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
133149 CGAGGGCTCT
*
133159 GCCTGGGCCTCG
1 GCCTGGGACTCG
133171 GCCTGGGACTCG
1 GCCTGGGACTCG
133183 GCCTGGG
1 GCCTGGG
133190 GGTCTTGCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.03, C:0.35, G:0.45, T:0.16
Consensus pattern (12 bp):
GCCTGGGACTCG
Left flanking sequence: Indices 132659 -- 133158
CTCATGGTTAATGCATCTTTTTCTTCGGGGCGCCCGGGTTGTATCCCGTCTTGGCGTTGCCCACG
GGAGTCTTGCGCTTGTCGAACTGGGGCTTGTCCTTGGGCTTGCGCTTCACCTCAAACGCCACGTA
CGAGTCCTCGACGTCGGCGCGTCCGTCGTCAAGCGCCCGCTTCTGCGACTCGGCCGACACAAAGT
CGCACACGATCGCCGGCCCGTGGTGCTTCCAGTACTTCACCGCGCCGTAGTTGTCGACGATGAAC
TGCTTGAGGGTGTCCTCGGGGATGTTGTGGATGCCCTGGCCCTTGACCAACACCGAAAACCACTC
GTTCTTGAACCCCTTGGTGTGCTGGGTGGTCGGGGTGGTGGCCTGGGGGGTGGTGCTCCCGTTCT
TGGCCGGCGGGGTGACCTTCTTGGCAGCGGGCTTGACCGTGGCGGCGGGCTTGGTGGCCGGGGTG
GTCTTGTGGAGCGACGCTGCCCAAGACACGGGGCCCGAGGGCTCT
Right flanking sequence: Indices 133190 -- 133689
GGTCTTGCTCGTCCTTGGCTTCCTCCTTGGGCTCTTCCTTGGGCTCGTCCTTGGGTTCAGCAGAC
TCCTCCTTGGCCTCCACAGCCTCTTCCTTAGCCTCAGTAGCCTCCTCCGTAGCCTCGGCAACCTC
CTCCTTGGCCTCCTCCTTGGCCTCCTCCGTAGACTCCTCCTTAGACTCCTCCTTGGTCTCCTTGG
ACTCTTCCTTGGGCTCCTCGGCCTCGTCCTCCTTCTCTTCCTGGTCCACCGCAGTCACCGCCACC
GTCGCCTTCGACTCAAGCGTCGTCTCAGGCTCGGTCGACGCATCCTTGAGCTCCCAGTCCAAGAA
CCGCAACACGTCGTTGGCAATGCTGTACACCATCTCGTTCTTGGCCGCCTTCTTCAAAATGATCG
TCTGGGTGAACTGGTGGAACTCGCTCTGGCCCTTGGCCCACTCACCATACACCACCACCAAGATG
TTGCTGCCAAAACACACGTCAAACGCGGCGTTGGTGATAACGATG
Found at i:133228 original size:12 final size:12
Alignment explanation
Indices: 133196--133244 Score: 64
Period size: 12 Copynumber: 4.1 Consensus size: 12
133186 TGGGGGTCTT
133196 GCTCGTCCTT-G
1 GCTCGTCCTTGG
*
133207 GCTTCCTCCTTGG
1 GC-TCGTCCTTGG
*
133220 GCTCTTCCTTGG
1 GCTCGTCCTTGG
133232 GCTCGTCCTTGG
1 GCTCGTCCTTGG
133244 G
1 G
133245 TTCAGCAGAC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
11 2 0.06
12 28 0.85
13 3 0.09
ACGTcount: A:0.00, C:0.35, G:0.29, T:0.37
Consensus pattern (12 bp):
GCTCGTCCTTGG
Left flanking sequence: Indices 132696 -- 133195
GTTGTATCCCGTCTTGGCGTTGCCCACGGGAGTCTTGCGCTTGTCGAACTGGGGCTTGTCCTTGG
GCTTGCGCTTCACCTCAAACGCCACGTACGAGTCCTCGACGTCGGCGCGTCCGTCGTCAAGCGCC
CGCTTCTGCGACTCGGCCGACACAAAGTCGCACACGATCGCCGGCCCGTGGTGCTTCCAGTACTT
CACCGCGCCGTAGTTGTCGACGATGAACTGCTTGAGGGTGTCCTCGGGGATGTTGTGGATGCCCT
GGCCCTTGACCAACACCGAAAACCACTCGTTCTTGAACCCCTTGGTGTGCTGGGTGGTCGGGGTG
GTGGCCTGGGGGGTGGTGCTCCCGTTCTTGGCCGGCGGGGTGACCTTCTTGGCAGCGGGCTTGAC
CGTGGCGGCGGGCTTGGTGGCCGGGGTGGTCTTGTGGAGCGACGCTGCCCAAGACACGGGGCCCG
AGGGCTCTGCCTGGGCCTCGGCCTGGGACTCGGCCTGGGGGTCTT
Right flanking sequence: Indices 133245 -- 133744
TTCAGCAGACTCCTCCTTGGCCTCCACAGCCTCTTCCTTAGCCTCAGTAGCCTCCTCCGTAGCCT
CGGCAACCTCCTCCTTGGCCTCCTCCTTGGCCTCCTCCGTAGACTCCTCCTTAGACTCCTCCTTG
GTCTCCTTGGACTCTTCCTTGGGCTCCTCGGCCTCGTCCTCCTTCTCTTCCTGGTCCACCGCAGT
CACCGCCACCGTCGCCTTCGACTCAAGCGTCGTCTCAGGCTCGGTCGACGCATCCTTGAGCTCCC
AGTCCAAGAACCGCAACACGTCGTTGGCAATGCTGTACACCATCTCGTTCTTGGCCGCCTTCTTC
AAAATGATCGTCTGGGTGAACTGGTGGAACTCGCTCTGGCCCTTGGCCCACTCACCATACACCAC
CACCAAGATGTTGCTGCCAAAACACACGTCAAACGCGGCGTTGGTGATAACGATGCGGTTGGTGC
GGTCGGCGCAGTCGTCGTCGGAAAACCGCTCCTTGATCGCCTCGG
Found at i:133330 original size:21 final size:21
Alignment explanation
Indices: 133246--133331 Score: 84
Period size: 21 Copynumber: 4.1 Consensus size: 21
133236 GTCCTTGGGT
* *
133246 TCAGCAGACTCCTCCTTGGCC
1 TCAGCAGCCTCCTCCTTAGCC
*
133267 TCCA-CAGCCTCTTCCTTAGCC
1 T-CAGCAGCCTCCTCCTTAGCC
* *
133288 TCAGTAGCCTCCTCCGTAGCC
1 TCAGCAGCCTCCTCCTTAGCC
* * *
133309 TCGGCAACCTCCTCCTTGGCC
1 TCAGCAGCCTCCTCCTTAGCC
133330 TC
1 TC
133332 CTCCTTGGCC
Statistics
Matches: 52, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
20 2 0.04
21 48 0.92
22 2 0.04
ACGTcount: A:0.13, C:0.45, G:0.16, T:0.26
Consensus pattern (21 bp):
TCAGCAGCCTCCTCCTTAGCC
Left flanking sequence: Indices 132746 -- 133245
GGGGCTTGTCCTTGGGCTTGCGCTTCACCTCAAACGCCACGTACGAGTCCTCGACGTCGGCGCGT
CCGTCGTCAAGCGCCCGCTTCTGCGACTCGGCCGACACAAAGTCGCACACGATCGCCGGCCCGTG
GTGCTTCCAGTACTTCACCGCGCCGTAGTTGTCGACGATGAACTGCTTGAGGGTGTCCTCGGGGA
TGTTGTGGATGCCCTGGCCCTTGACCAACACCGAAAACCACTCGTTCTTGAACCCCTTGGTGTGC
TGGGTGGTCGGGGTGGTGGCCTGGGGGGTGGTGCTCCCGTTCTTGGCCGGCGGGGTGACCTTCTT
GGCAGCGGGCTTGACCGTGGCGGCGGGCTTGGTGGCCGGGGTGGTCTTGTGGAGCGACGCTGCCC
AAGACACGGGGCCCGAGGGCTCTGCCTGGGCCTCGGCCTGGGACTCGGCCTGGGGGTCTTGCTCG
TCCTTGGCTTCCTCCTTGGGCTCTTCCTTGGGCTCGTCCTTGGGT
Right flanking sequence: Indices 133332 -- 133831
CTCCTTGGCCTCCTCCGTAGACTCCTCCTTAGACTCCTCCTTGGTCTCCTTGGACTCTTCCTTGG
GCTCCTCGGCCTCGTCCTCCTTCTCTTCCTGGTCCACCGCAGTCACCGCCACCGTCGCCTTCGAC
TCAAGCGTCGTCTCAGGCTCGGTCGACGCATCCTTGAGCTCCCAGTCCAAGAACCGCAACACGTC
GTTGGCAATGCTGTACACCATCTCGTTCTTGGCCGCCTTCTTCAAAATGATCGTCTGGGTGAACT
GGTGGAACTCGCTCTGGCCCTTGGCCCACTCACCATACACCACCACCAAGATGTTGCTGCCAAAA
CACACGTCAAACGCGGCGTTGGTGATAACGATGCGGTTGGTGCGGTCGGCGCAGTCGTCGTCGGA
AAACCGCTCCTTGATCGCCTCGGTGCCCTTGGCTGCCAACACCTCCCCCCGGGTGTCGGGACCCG
GGAACTTGGCGTGCGACACCAGCGCATCGGGGGTATACAACCGGT
Found at i:133331 original size:12 final size:12
Alignment explanation
Indices: 133317--133403 Score: 90
Period size: 12 Copynumber: 7.5 Consensus size: 12
133307 CCTCGGCAAC
*
133317 CTCCTCCTTGGC
1 CTCCTCCTTGGA
*
133329 CTCCTCCTTGGC
1 CTCCTCCTTGGA
* *
133341 CTCCTCCGTAGA
1 CTCCTCCTTGGA
*
133353 CTCCTCCTTAGA
1 CTCCTCCTTGGA
133365 CTCCTCCTTGG-
1 CTCCTCCTTGGA
133376 -T-CTCCTTGGA
1 CTCCTCCTTGGA
* *
133386 CTCTTCCTTGGG
1 CTCCTCCTTGGA
133398 CTCCTC
1 CTCCTC
133404 GGCCTCGTCC
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
9 8 0.12
10 1 0.02
11 1 0.02
12 54 0.84
ACGTcount: A:0.06, C:0.44, G:0.16, T:0.34
Consensus pattern (12 bp):
CTCCTCCTTGGA
Left flanking sequence: Indices 132817 -- 133316
TCAAGCGCCCGCTTCTGCGACTCGGCCGACACAAAGTCGCACACGATCGCCGGCCCGTGGTGCTT
CCAGTACTTCACCGCGCCGTAGTTGTCGACGATGAACTGCTTGAGGGTGTCCTCGGGGATGTTGT
GGATGCCCTGGCCCTTGACCAACACCGAAAACCACTCGTTCTTGAACCCCTTGGTGTGCTGGGTG
GTCGGGGTGGTGGCCTGGGGGGTGGTGCTCCCGTTCTTGGCCGGCGGGGTGACCTTCTTGGCAGC
GGGCTTGACCGTGGCGGCGGGCTTGGTGGCCGGGGTGGTCTTGTGGAGCGACGCTGCCCAAGACA
CGGGGCCCGAGGGCTCTGCCTGGGCCTCGGCCTGGGACTCGGCCTGGGGGTCTTGCTCGTCCTTG
GCTTCCTCCTTGGGCTCTTCCTTGGGCTCGTCCTTGGGTTCAGCAGACTCCTCCTTGGCCTCCAC
AGCCTCTTCCTTAGCCTCAGTAGCCTCCTCCGTAGCCTCGGCAAC
Right flanking sequence: Indices 133404 -- 133903
GGCCTCGTCCTCCTTCTCTTCCTGGTCCACCGCAGTCACCGCCACCGTCGCCTTCGACTCAAGCG
TCGTCTCAGGCTCGGTCGACGCATCCTTGAGCTCCCAGTCCAAGAACCGCAACACGTCGTTGGCA
ATGCTGTACACCATCTCGTTCTTGGCCGCCTTCTTCAAAATGATCGTCTGGGTGAACTGGTGGAA
CTCGCTCTGGCCCTTGGCCCACTCACCATACACCACCACCAAGATGTTGCTGCCAAAACACACGT
CAAACGCGGCGTTGGTGATAACGATGCGGTTGGTGCGGTCGGCGCAGTCGTCGTCGGAAAACCGC
TCCTTGATCGCCTCGGTGCCCTTGGCTGCCAACACCTCCCCCCGGGTGTCGGGACCCGGGAACTT
GGCGTGCGACACCAGCGCATCGGGGGTATACAACCGGTACATCTTGTCGACCTGGTTGTTGAAGT
GCTCAAAGTAGGTGGAAATAAAGCTCCACCCGATGGAAGCGGCGT
Found at i:133380 original size:21 final size:21
Alignment explanation
Indices: 133356--133402 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
133346 CCGTAGACTC
*
133356 CTCCTTAGACTCCTCCTTGGT
1 CTCCTTAGACTCCTCCTTGGG
* *
133377 CTCCTTGGACTCTTCCTTGGG
1 CTCCTTAGACTCCTCCTTGGG
133398 CTCCT
1 CTCCT
133403 CGGCCTCGTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.06, C:0.38, G:0.17, T:0.38
Consensus pattern (21 bp):
CTCCTTAGACTCCTCCTTGGG
Left flanking sequence: Indices 132856 -- 133355
CACACGATCGCCGGCCCGTGGTGCTTCCAGTACTTCACCGCGCCGTAGTTGTCGACGATGAACTG
CTTGAGGGTGTCCTCGGGGATGTTGTGGATGCCCTGGCCCTTGACCAACACCGAAAACCACTCGT
TCTTGAACCCCTTGGTGTGCTGGGTGGTCGGGGTGGTGGCCTGGGGGGTGGTGCTCCCGTTCTTG
GCCGGCGGGGTGACCTTCTTGGCAGCGGGCTTGACCGTGGCGGCGGGCTTGGTGGCCGGGGTGGT
CTTGTGGAGCGACGCTGCCCAAGACACGGGGCCCGAGGGCTCTGCCTGGGCCTCGGCCTGGGACT
CGGCCTGGGGGTCTTGCTCGTCCTTGGCTTCCTCCTTGGGCTCTTCCTTGGGCTCGTCCTTGGGT
TCAGCAGACTCCTCCTTGGCCTCCACAGCCTCTTCCTTAGCCTCAGTAGCCTCCTCCGTAGCCTC
GGCAACCTCCTCCTTGGCCTCCTCCTTGGCCTCCTCCGTAGACTC
Right flanking sequence: Indices 133403 -- 133902
CGGCCTCGTCCTCCTTCTCTTCCTGGTCCACCGCAGTCACCGCCACCGTCGCCTTCGACTCAAGC
GTCGTCTCAGGCTCGGTCGACGCATCCTTGAGCTCCCAGTCCAAGAACCGCAACACGTCGTTGGC
AATGCTGTACACCATCTCGTTCTTGGCCGCCTTCTTCAAAATGATCGTCTGGGTGAACTGGTGGA
ACTCGCTCTGGCCCTTGGCCCACTCACCATACACCACCACCAAGATGTTGCTGCCAAAACACACG
TCAAACGCGGCGTTGGTGATAACGATGCGGTTGGTGCGGTCGGCGCAGTCGTCGTCGGAAAACCG
CTCCTTGATCGCCTCGGTGCCCTTGGCTGCCAACACCTCCCCCCGGGTGTCGGGACCCGGGAACT
TGGCGTGCGACACCAGCGCATCGGGGGTATACAACCGGTACATCTTGTCGACCTGGTTGTTGAAG
TGCTCAAAGTAGGTGGAAATAAAGCTCCACCCGATGGAAGCGGCG
Found at i:133414 original size:21 final size:21
Alignment explanation
Indices: 133363--133414 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 21
133353 CTCCTCCTTA
* * *
133363 GACTCCTCCTTGGTCTCCTTG
1 GACTCGTCCTTGGGCTCCTCG
*
133384 GACTCTTCCTTGGGCTCCTCG
1 GACTCGTCCTTGGGCTCCTCG
*
133405 GCCTCGTCCT
1 GACTCGTCCT
133415 CCTTCTCTTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.04, C:0.40, G:0.21, T:0.35
Consensus pattern (21 bp):
GACTCGTCCTTGGGCTCCTCG
Left flanking sequence: Indices 132863 -- 133362
TCGCCGGCCCGTGGTGCTTCCAGTACTTCACCGCGCCGTAGTTGTCGACGATGAACTGCTTGAGG
GTGTCCTCGGGGATGTTGTGGATGCCCTGGCCCTTGACCAACACCGAAAACCACTCGTTCTTGAA
CCCCTTGGTGTGCTGGGTGGTCGGGGTGGTGGCCTGGGGGGTGGTGCTCCCGTTCTTGGCCGGCG
GGGTGACCTTCTTGGCAGCGGGCTTGACCGTGGCGGCGGGCTTGGTGGCCGGGGTGGTCTTGTGG
AGCGACGCTGCCCAAGACACGGGGCCCGAGGGCTCTGCCTGGGCCTCGGCCTGGGACTCGGCCTG
GGGGTCTTGCTCGTCCTTGGCTTCCTCCTTGGGCTCTTCCTTGGGCTCGTCCTTGGGTTCAGCAG
ACTCCTCCTTGGCCTCCACAGCCTCTTCCTTAGCCTCAGTAGCCTCCTCCGTAGCCTCGGCAACC
TCCTCCTTGGCCTCCTCCTTGGCCTCCTCCGTAGACTCCTCCTTA
Right flanking sequence: Indices 133415 -- 133914
CCTTCTCTTCCTGGTCCACCGCAGTCACCGCCACCGTCGCCTTCGACTCAAGCGTCGTCTCAGGC
TCGGTCGACGCATCCTTGAGCTCCCAGTCCAAGAACCGCAACACGTCGTTGGCAATGCTGTACAC
CATCTCGTTCTTGGCCGCCTTCTTCAAAATGATCGTCTGGGTGAACTGGTGGAACTCGCTCTGGC
CCTTGGCCCACTCACCATACACCACCACCAAGATGTTGCTGCCAAAACACACGTCAAACGCGGCG
TTGGTGATAACGATGCGGTTGGTGCGGTCGGCGCAGTCGTCGTCGGAAAACCGCTCCTTGATCGC
CTCGGTGCCCTTGGCTGCCAACACCTCCCCCCGGGTGTCGGGACCCGGGAACTTGGCGTGCGACA
CCAGCGCATCGGGGGTATACAACCGGTACATCTTGTCGACCTGGTTGTTGAAGTGCTCAAAGTAG
GTGGAAATAAAGCTCCACCCGATGGAAGCGGCGTCCTGGTCGCCA
Found at i:139558 original size:21 final size:21
Alignment explanation
Indices: 139532--139571 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
139522 GGCGAGATCT
139532 CCAATCTC-ACCAAGCTGATTG
1 CCAATCTCGACC-AGCTGATTG
139553 CCAATCTCGACCAGCTGAT
1 CCAATCTCGACCAGCTGAT
139572 GGTGGTGAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 15 0.83
22 3 0.17
ACGTcount: A:0.28, C:0.35, G:0.15, T:0.23
Consensus pattern (21 bp):
CCAATCTCGACCAGCTGATTG
Left flanking sequence: Indices 139032 -- 139531
CCACCCGGCCCACACCGTCAAGGGGCTCGAACTCTACGACCTCATGAACAAGCGGGACAACCTTA
ACATGGAGATTAACCATGCGCGCCTGACCAAGGCCAAGTACGAGGTTGAGATCTACGAGGCAGAC
GAGACGCTCCAGCCACTCAAAAAGGAGCTTGAGCTGATCATCGAGCTGATAGAAGGGCTAAACGC
AGAAGAGAACTCTGCCATTGCCGAGATTGACCGTGAAATACAACGCGAACGTGAGGAAATCGACA
AACACCACCAGCAACGCATCGATAAGTTGCGGGAGGAGACGGAAGCCAAGTGCGACCACGAGTAC
ACCACACGCACCGCTGCTGCCCGGGAAAAGCAGGCGAAGTTGGAGCAGGAAATTGCCTCGCTCAC
CGCAGAGCTTGCTAACGAGGTGTCGCTGCGAGACGAGAAGCTCGAGGACCTCAAACGGACCCATG
CCAACCGGCGGATGCTGGGCATTCGCGCGTTGGACGGCGAGATCT
Right flanking sequence: Indices 139572 -- 140071
GGTGGTGAACGAGAAGAAGTACAAGCGGATGTCCGCCAAGCTCATCAGCGCCCAGGACGAGGAAA
ACCTGTTGATCGAGGCACTCGCAGCAGCACAGAAGGCCCACGAGGCCAAACAGAACGAGTTGGTT
GAGCTCCGCGAGCAGTACCGGCTGAAAATGCTGTACATCTCCACCACCAAGGCGTCGTTTGCCAC
CGCCAGCGACACCATCGACGACTTGCACCGCGAGCTCGCCGAGCTTCTGAGCGCGTTGGCCGCGC
TGGAAACCCGGCGCCGCACTCTCCACAACAAGTTGCAGGACCTCAAGGGTAACATCCGGGTGTTC
TGCCGCATGCGACCCGTGGACGCCCTGACACCCCAGTTCACCCACCAGGTGGATCCCAAGCTAAC
GAGAGAGGGGTCCGAGACACTCACCATCAGCGACGGCGTCAAACTGTACGCCTTCCCGTTTGACC
AGGTGTTCACCCCGTCGACGACGAACGAAGCCATCTTTGAGGAGA
Found at i:142114 original size:10 final size:10
Alignment explanation
Indices: 142099--142123 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
142089 GCCTGTGGCT
142099 CGTACATTTC
1 CGTACATTTC
142109 CGTACATTTC
1 CGTACATTTC
142119 CGTAC
1 CGTAC
142124 TTTTGTGGCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.32, G:0.12, T:0.36
Consensus pattern (10 bp):
CGTACATTTC
Left flanking sequence: Indices 141599 -- 142098
GGAAAACGCAAAGTCCTGGGTCAACGGCTTCGCCACCACGTACTCCGCCAACGCCCCCGTCCCGA
AAACGTGCCAGTAGAACCCCACCACACGGTCTCCGACGTTAATTCCCAACTTCGCACTGACGTCC
GCACCGATCTTCTCCACCACTCCGGAGTAGTCGCGCCCAGTGCCCTGTTTGTCGTTGAGGTAGCT
CAATGGCCAGTACGCGGAGTTGTAGACAATGGCGTCTACCGGGTTCAACAGAGTGCTGTGGACCT
TGACCACGACCTCGTCGGGTCTGACCGACCCCGGCAACTCGCTGTAGGTGACGTGGAGCGGGTCC
TTGTTCGAGGAGTAGGTGTACGATTTAAAGGGGGCCATGGTGGTTTTAGGGAGTTAGCCTGCTAT
ATGTACGATAACAACCATGCAGGATCCGATGGCGGGCGGTATGCGGTAGGTTTATCCGGGTGACG
GAAAATAAGATCGTGGAAGGTGGGCCCGAAGCGATGCCTGTGGCT
Right flanking sequence: Indices 142124 -- 142623
TTTTGTGGCGTTGCTGACAAATGGCACATATTACACCGACTACGACCACTATTGTGGTACGAAAA
ACTCGTATCTTCGTCTATTTACAGGGAGGACTCGGCAAGGAGATTGGTATCGGGGACGTAGTTGG
TGGCGCTGCGCAACAACCCCAGCAGCTGGGCAGCCAGCCACGCTGCGGGGTGGTGCTCCATCGCC
CACTCGCCCACCTTGCGTTGGTGGGCCTCGTCTATGCAGTAGTTGTGTAACGCCAACACAGTGTC
GGAAGTGACGGGGATGTCGAAGTCAGCGTCGAACTCCAGCGTGAGCTGCAACGCCTCGTCGACGT
GCCCGTGGTACACGTGGGCAATGAGGTATTGCTTGGCGATTTTGTCGTCGGGAATGATGCCAAAC
TTCGACAAGTTGTTGTAGAACTTGGTGACGTAGTCCAAGTCGTTGTAGGTGTACGCCTTGATCAT
GATCTGGGCGGTCTCGGCGTTGATCCCCAGCGGGGCAATCGCCAA
Found at i:151954 original size:42 final size:42
Alignment explanation
Indices: 151908--152009 Score: 141
Period size: 42 Copynumber: 2.4 Consensus size: 42
151898 GTCGTCATCA
* * * *
151908 CCACCAGCACCACCACCACCGATGAGAGTGGAGTTGGAGTAG
1 CCACCAGCACCACCACCACCAACGAGAGTAGAGTTGGAGAAG
* * *
151950 CCACCAGCACCACCGCCGCCAACGAGGGTAGAGTTGGAGAAG
1 CCACCAGCACCACCACCACCAACGAGAGTAGAGTTGGAGAAG
151992 CCACCAGCACCACCACCA
1 CCACCAGCACCACCACCA
152010 ATGACACCAG
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 51 1.00
ACGTcount: A:0.29, C:0.37, G:0.25, T:0.08
Consensus pattern (42 bp):
CCACCAGCACCACCACCACCAACGAGAGTAGAGTTGGAGAAG
Left flanking sequence: Indices 151408 -- 151907
GATCTCTTTGTTGGGCAGCCCTGGTACCTTCTCCAGTTTCGAGGTTCTTGCTCACAACGACGACA
TTGTGAGCCACTTTGGGGCTTTGGCAGGTTGCAGATGTCCGCGTGAACCCCGCTTCGTCGACCCG
ATCTCCGTAGGGATCGTTCACCAAGTCCCCGACGATCGTTTCCTTGCCTTTCCCCAGCTGTACCA
CCCCTGCGTCGTGACGCACGCACTACAAGCAGTTCCAAAGTAAAGTCGTATCAATTATTAATCAT
TAGTTTAGTCTATAAACCAGTTTTGTTTGTCACATCATCTAAAGCAAAGCAGCAACCACCCCCAA
GGCCAAGAGACCGTTGACACCAGCCTGCATGGCACCGTTGTCGGTCTTCGAGTCAGTCTTGGACT
CACCGGCCACAGTCTTGCTGGGGTCGGCAGAGCCGTCAGTGCCAGTGGCAGTAGTCAAGGTAGTC
TCAGAGTCGTCACCGTCACCACCAGTGGCGGTAGCGTCGTCATCA
Right flanking sequence: Indices 152010 -- 152509
ATGACACCAGCACCGCCAGTGGGAGAAGAGTCGTCAGTGGCCTCGGGGAGCGAAGCAGAGGTCAA
ACCGTCAGTAGACAAAACAGAGTCGGTGGCACCGGTCTCAACACCGGTCTCGGTGGCCTCAGAAA
CAGTCTCAGCACCAGTCTCACCGGTCTCGGCACCAGTCTCGGCACCAGTCTCAGCACCGGTCTCA
GCACCAGTCTCAGCGCCGGTCTCAGCGCCAGTCTCGGCACCGGTCTCAGCACCAGTCTCAGCACC
AGTCTCAGCGCCAGTCTCAGCGCCAGTCTCAGCACCAGTCTCGGCACCGGTCTCGGCACCAGTCT
CAGCGTCAGCAGCACCAGTGGCAGCCTGAGTGTAGAAAGCAGTGATGGGAACACGGCCATCGTTC
TCAGCGTAAAGCTGGGCGTAGTGGGAAGCGGCAGAAGCACGCTGGTCGGTGGCAAAGTCATTGGA
GTTCTCGATCGACGAGCTCATTTCCTCGGGGGAAATAGTCAACAC
Found at i:152155 original size:12 final size:12
Alignment explanation
Indices: 152140--152338 Score: 251
Period size: 12 Copynumber: 16.8 Consensus size: 12
152130 GCCTCAGAAA
152140 CAGTCTCAGCAC
1 CAGTCTCAGCAC
152152 CAGTCT---CAC
1 CAGTCTCAGCAC
* *
152161 CGGTCTCGGCAC
1 CAGTCTCAGCAC
*
152173 CAGTCTCGGCAC
1 CAGTCTCAGCAC
152185 CAGTCTCAGCAC
1 CAGTCTCAGCAC
*
152197 CGGTCTCAGCAC
1 CAGTCTCAGCAC
*
152209 CAGTCTCAGCGC
1 CAGTCTCAGCAC
* *
152221 CGGTCTCAGCGC
1 CAGTCTCAGCAC
*
152233 CAGTCTCGGCAC
1 CAGTCTCAGCAC
*
152245 CGGTCTCAGCAC
1 CAGTCTCAGCAC
152257 CAGTCTCAGCAC
1 CAGTCTCAGCAC
*
152269 CAGTCTCAGCGC
1 CAGTCTCAGCAC
*
152281 CAGTCTCAGCGC
1 CAGTCTCAGCAC
152293 CAGTCTCAGCAC
1 CAGTCTCAGCAC
*
152305 CAGTCTCGGCAC
1 CAGTCTCAGCAC
* *
152317 CGGTCTCGGCAC
1 CAGTCTCAGCAC
152329 CAGTCTCAGC
1 CAGTCTCAGC
152339 GTCAGCAGCA
Statistics
Matches: 165, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
9 8 0.05
12 157 0.95
ACGTcount: A:0.18, C:0.42, G:0.24, T:0.17
Consensus pattern (12 bp):
CAGTCTCAGCAC
Left flanking sequence: Indices 151640 -- 152139
AAGTAAAGTCGTATCAATTATTAATCATTAGTTTAGTCTATAAACCAGTTTTGTTTGTCACATCA
TCTAAAGCAAAGCAGCAACCACCCCCAAGGCCAAGAGACCGTTGACACCAGCCTGCATGGCACCG
TTGTCGGTCTTCGAGTCAGTCTTGGACTCACCGGCCACAGTCTTGCTGGGGTCGGCAGAGCCGTC
AGTGCCAGTGGCAGTAGTCAAGGTAGTCTCAGAGTCGTCACCGTCACCACCAGTGGCGGTAGCGT
CGTCATCACCACCAGCACCACCACCACCGATGAGAGTGGAGTTGGAGTAGCCACCAGCACCACCG
CCGCCAACGAGGGTAGAGTTGGAGAAGCCACCAGCACCACCACCAATGACACCAGCACCGCCAGT
GGGAGAAGAGTCGTCAGTGGCCTCGGGGAGCGAAGCAGAGGTCAAACCGTCAGTAGACAAAACAG
AGTCGGTGGCACCGGTCTCAACACCGGTCTCGGTGGCCTCAGAAA
Right flanking sequence: Indices 152339 -- 152838
GTCAGCAGCACCAGTGGCAGCCTGAGTGTAGAAAGCAGTGATGGGAACACGGCCATCGTTCTCAG
CGTAAAGCTGGGCGTAGTGGGAAGCGGCAGAAGCACGCTGGTCGGTGGCAAAGTCATTGGAGTTC
TCGATCGACGAGCTCATTTCCTCGGGGGAAATAGTCAACACATCCTCGTCGGCTCTCTTGGCGGC
CAAAGCGCCAGCAGCGAACATACCCAAAGCAAGGAACTTCATATTGTCTGTGGTTATTGATTGAA
ACGAATTCTGGCCATCCCAGCTATTTATATATCGTTTGGAGCGAACCAGGCTGTGCTAAGGAACC
AGCCTAATATCGATCAATTATTTATGCACGATGTATGAGGTGCATCGAAAAGCAACGAATGCTGC
ACAGTGTTTGCATTATGGCGCGAATTTTTCGGTGAACTGTGTGTTCGGTTAGGAGCAAACGCCAA
AAATAGTGGGCTGGACGGTATGTAGCGGGTCGAGCAAGGGGCTGA
Found at i:154591 original size:14 final size:15
Alignment explanation
Indices: 154559--154594 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
154549 CACACCCCTT
*
154559 ACCACCAGCCTTCCC
1 ACCACCAGCCTTACC
154574 ACCACCAG-CTTACC
1 ACCACCAGCCTTACC
154588 ACCACCA
1 ACCACCA
154595 TCTATCCCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.28, C:0.56, G:0.06, T:0.11
Consensus pattern (15 bp):
ACCACCAGCCTTACC
Left flanking sequence: Indices 154059 -- 154558
CGCCTGAGCTCGTCGTAGGTGGCGGGACCCACGGTGTATGCAGTTTTCGCCAAGATGGCCTTCTT
GACGGAGGTGTCGTCGATGGCTTGCACGCACTCGTCAAACATCTCCACGCCCCGTTTGGAGGTGA
TGATGAACGTGGGTGTGGCGAGAAAGTCGTCGCTGGTGAGAAAGTCTATCGTCTGTTGCTTGTCC
CAGTGGGAGTGGTGGAGGAGCGGGATGAACACCGGGTGGAACTCGCTGGCGGAGAAGCGGTCATG
GTAGGGGTCGCTGGGCGTGCTGGGGTTCTTGAGGAGAAGCACCGGCCTGGTGTGCGTGGGCATGA
GGAAGGATGAGTGGTTGTTAGCCCGGTGGTTGCCCCGTATTTGACTCGCGCTTTTCTGTTGGGCT
GCATAGAGGAGGGGACAAACACGAGACTGACCCGTTTCAAAGGGTACAAACACTGGTATATAAGC
ATTTCGTAAAACAACCGTACTGCCACACGCTCCACCACACCCCTT
Right flanking sequence: Indices 154595 -- 155094
TCTATCCCAAAGATATTCATTAATCATATAAATCAACCTAACCGTATTATCCCACAAGACGTTCC
TTATATACCCGAGCGATGCGGTCGCTCCCCACCATCATGTTGCCCAACGAGTTGCGCACAGCCAA
CTTGAGGTACTCGATCAGCTCGAACCGGTAGCCCATCACCGACCCCAAGAAGAAAAGTCCGACAA
TGATCATCAACATCGGCAACCAGAAGAAAAACAACATCTTGTCGTTCTCCATCGTTTTGCGCGGG
TGGTTGATGTACAGCACCACCATGTCCTCGCTCAGGTCCAGGGTGATGCCGGTGTCCTCGTCCGA
CGCGTGCGCCGCCGCCGCCGCTGACGTCAGCGTGGCAGCGTCGTTGAGCATCCGCTCCAACAGCA
GCTTGGGCTTCTCCTCCGACCCGTTGCCGCCAAAGGGGAAGAGGTCGTCGTACAGCGGCAACCGC
TCAACGTCCTCCTCGTTGTTGAACGCGTTCTTGACCCGCTGCCAG
Found at i:160005 original size:15 final size:15
Alignment explanation
Indices: 159985--160013 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
159975 CCGCCCGCGA
159985 CCGCTCGCCAGCCCC
1 CCGCTCGCCAGCCCC
160000 CCGCTCGCCAGCCC
1 CCGCTCGCCAGCCC
160014 GGTCTCCCGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.66, G:0.21, T:0.07
Consensus pattern (15 bp):
CCGCTCGCCAGCCCC
Left flanking sequence: Indices 159485 -- 159984
CGCCGTGGCCGTGGCCGTGGTCGCGAACGGGACTATGACGACCGTCGGGGCTACGGACGGGACTA
CGAACGCGGTGGGTTCTACGAAGACTACGACCGGGGCTACGGACGCTACGACAACCGTGGCTACG
GCTTCCCGGACCGCCAGCCCCCGGCCGACTACGGTTATGGCCCCAGAGGCTACGGGTACGCTCCT
CGCGGTGGCTACCGGGACCGTGACGAGCCTCGTGCACCCCGTCCTCGCTCATACGAAGAGTACCG
CAACAACCGCGAGCGCGAACGCTCCCACGACGGCGAGCGTGACCGCCACGGGTATTCCCGGTCCC
CCTCGCGTTCTCCCGTGCGCAGAGATCGGTCACGCGAGCGGTCCCCTGTCAGAGACCGTTCCCCC
GTTAGAGACCGGTCGCCAGTGCGTGATCGGTCTCCTGTCCGCGATAGCCCTGCTCCCCGCGAGCG
TTCCCCCATGAGAGACCGTTCTCCAGCCCGTTCCCCCGCCCGCGA
Right flanking sequence: Indices 160014 -- 160513
GGTCTCCCGAGTAATCCCCCATCCCTCGTCGACCTTTCCTCCCCCTAATATCCACTTAGTCATTC
CAGTCACAGACTCCCCGAAACGCAGACGATCCGTTTATGATAGTTCCGAAATAAAAATCCAGTTG
AATCCCCAGGTCCCTCCCATCCTCCCTCCCATCCGACCCTCTCCAGTAAACCGTCCCGTAACCTC
CGTCCCCCAGGTTTTCCCATCCCGTAACTCCATCCAAACCCAGGTCCTTCCTATCACCATTCCTT
ACCACTCCTAGATACTCCACAACCCAGTTCATTACATTCCTCAGCATTCCTGCGAGTCTTTTGCA
ATACAACCTTTTCATTCCTTTGAGACATAGCGCTCGTTTACATTTTTTCAAAGACCATAGTCAGA
TGGTTCATTCATTATGTACACAGATTTGGTACTCTTAGCTAAGGTTCCAGGGGAGTTCCTCGACC
AACCATAGCTGCGAGTAGCGAATCAGCTCGACGGAGCAGGCCACA
Found at i:172349 original size:15 final size:17
Alignment explanation
Indices: 172331--172371 Score: 59
Period size: 15 Copynumber: 2.5 Consensus size: 17
172321 TCGCCGTCAC
172331 CGTCAAACTCGCCGTCGT
1 CGTCAAACTCGCCG-CGT
172349 CGTCAAACTCG-C-CGT
1 CGTCAAACTCGCCGCGT
172364 CGTCAAAC
1 CGTCAAAC
172372 CCGTCGTCGA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 11 0.48
17 1 0.04
18 11 0.48
ACGTcount: A:0.22, C:0.39, G:0.20, T:0.20
Consensus pattern (17 bp):
CGTCAAACTCGCCGCGT
Left flanking sequence: Indices 171831 -- 172330
GTCCTTCGGGTAGAAGAGCTTCATCGCGTCCACCCACCGCTCCTTGGTCAGCTTGACGTAGAGGT
TGGCCATGGCGTCGTCGCCGTCGGTGCGCGGCGGGCCCAAGTGCAAGATGTTGTCCATCTCGAGC
GGGTAGTTGATGACGCCGCCGCGGCCGGCGCCGATGCGGAGGGTGTTGCGGAGCACGCCGCCGTC
GCCGAGGAACAGGTCCAAGAGGTCGGCAAGCAGCGTCGACCCGTCCACCGTGCGGGCGACCCGCG
GGAACACCGCGGCCGGCGCCGGCTCGTCGTCGTCGGTGGCGTCGGTGAGCGCGTCGGTGTCGTCG
CCGTCGTCGGTGGCACGGCGGCGGCGCAACGGCGCCTGCTCGTCCTCGAAGGCGTCGATCCACCC
GTCAAAGTCGCCGTCGCCGTCGTCCACCGCCTCGTCGCCGTCGTCGCCGTCGAGCTCGTCAAGAT
CGTCGAACCCGTCGAGCTCGTCAAACTCACGGTACTCGCCGTCAC
Right flanking sequence: Indices 172372 -- 172871
CCGTCGTCGAGCTCGCCGTACTCGCCGTCGTCGTCGATCTCCTCGATGATCTGCATGTGGTTGCC
GTCCTCGTCCACCATCATGTCGAGCAGGCCCTGGTCCAGGAAGCCGTCGTCGAGCGCGTACTCGC
CCTCGACGTAGTTGTCGCTGGCGCTGGCGTCGTCGCTGTCGTCGGCGAGCATCTCGTTGTCGTCC
GAGAGCCCCTCCAGCTCGTCGTCGTCCAGGCCTTCGTCCTCGGGCACCTCCTCGCCCAGCATCAA
CACCTCGAGCTCCGGGTCGGCAAACTCGTCGGCAAACTCGTCGTCCTCCTCGGACTCCGTCTGCA
TGTCGTACATGCCCAACGTCAGGTTGCGGAAGAGGTTGTCGGTGGCGTCGTCGTCCTCCATGTCC
ACGTCGCCCTCGTCGTCGTCGTCGTCGCCGTCGGCGCCCTCCTCGCGGTCGGCGCCCAAGAGGTC
TGGGTACTCGAGCTTCAGCTTCAGCAACTGGATGAGCGGCTTGAG
Found at i:172365 original size:18 final size:18
Alignment explanation
Indices: 172319--172367 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
172309 AACTCACGGT
**
172319 ACTCGCCGTCACCGTCAA
1 ACTCGCCGTCGTCGTCAA
172337 ACTCGCCGTCGTCGTCAA
1 ACTCGCCGTCGTCGTCAA
172355 ACTCGCCGTCGTC
1 ACTCGCCGTCGTC
172368 AAACCCGTCG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.16, C:0.43, G:0.20, T:0.20
Consensus pattern (18 bp):
ACTCGCCGTCGTCGTCAA
Left flanking sequence: Indices 171819 -- 172318
GTAGCGGTCCTTGTCCTTCGGGTAGAAGAGCTTCATCGCGTCCACCCACCGCTCCTTGGTCAGCT
TGACGTAGAGGTTGGCCATGGCGTCGTCGCCGTCGGTGCGCGGCGGGCCCAAGTGCAAGATGTTG
TCCATCTCGAGCGGGTAGTTGATGACGCCGCCGCGGCCGGCGCCGATGCGGAGGGTGTTGCGGAG
CACGCCGCCGTCGCCGAGGAACAGGTCCAAGAGGTCGGCAAGCAGCGTCGACCCGTCCACCGTGC
GGGCGACCCGCGGGAACACCGCGGCCGGCGCCGGCTCGTCGTCGTCGGTGGCGTCGGTGAGCGCG
TCGGTGTCGTCGCCGTCGTCGGTGGCACGGCGGCGGCGCAACGGCGCCTGCTCGTCCTCGAAGGC
GTCGATCCACCCGTCAAAGTCGCCGTCGCCGTCGTCCACCGCCTCGTCGCCGTCGTCGCCGTCGA
GCTCGTCAAGATCGTCGAACCCGTCGAGCTCGTCAAACTCACGGT
Right flanking sequence: Indices 172368 -- 172867
AAACCCGTCGTCGAGCTCGCCGTACTCGCCGTCGTCGTCGATCTCCTCGATGATCTGCATGTGGT
TGCCGTCCTCGTCCACCATCATGTCGAGCAGGCCCTGGTCCAGGAAGCCGTCGTCGAGCGCGTAC
TCGCCCTCGACGTAGTTGTCGCTGGCGCTGGCGTCGTCGCTGTCGTCGGCGAGCATCTCGTTGTC
GTCCGAGAGCCCCTCCAGCTCGTCGTCGTCCAGGCCTTCGTCCTCGGGCACCTCCTCGCCCAGCA
TCAACACCTCGAGCTCCGGGTCGGCAAACTCGTCGGCAAACTCGTCGTCCTCCTCGGACTCCGTC
TGCATGTCGTACATGCCCAACGTCAGGTTGCGGAAGAGGTTGTCGGTGGCGTCGTCGTCCTCCAT
GTCCACGTCGCCCTCGTCGTCGTCGTCGTCGCCGTCGGCGCCCTCCTCGCGGTCGGCGCCCAAGA
GGTCTGGGTACTCGAGCTTCAGCTTCAGCAACTGGATGAGCGGCT
Found at i:172379 original size:15 final size:15
Alignment explanation
Indices: 172342--172380 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
172332 GTCAAACTCG
172342 CCGTCGTCGTCAAAC
1 CCGTCGTCGTCAAAC
* *
172357 TCGCCGTCGTCAAAC
1 CCGTCGTCGTCAAAC
172372 CCGTCGTCG
1 CCGTCGTCG
172381 AGCTCGCCGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.15, C:0.41, G:0.23, T:0.21
Consensus pattern (15 bp):
CCGTCGTCGTCAAAC
Left flanking sequence: Indices 171842 -- 172341
AGAAGAGCTTCATCGCGTCCACCCACCGCTCCTTGGTCAGCTTGACGTAGAGGTTGGCCATGGCG
TCGTCGCCGTCGGTGCGCGGCGGGCCCAAGTGCAAGATGTTGTCCATCTCGAGCGGGTAGTTGAT
GACGCCGCCGCGGCCGGCGCCGATGCGGAGGGTGTTGCGGAGCACGCCGCCGTCGCCGAGGAACA
GGTCCAAGAGGTCGGCAAGCAGCGTCGACCCGTCCACCGTGCGGGCGACCCGCGGGAACACCGCG
GCCGGCGCCGGCTCGTCGTCGTCGGTGGCGTCGGTGAGCGCGTCGGTGTCGTCGCCGTCGTCGGT
GGCACGGCGGCGGCGCAACGGCGCCTGCTCGTCCTCGAAGGCGTCGATCCACCCGTCAAAGTCGC
CGTCGCCGTCGTCCACCGCCTCGTCGCCGTCGTCGCCGTCGAGCTCGTCAAGATCGTCGAACCCG
TCGAGCTCGTCAAACTCACGGTACTCGCCGTCACCGTCAAACTCG
Right flanking sequence: Indices 172381 -- 172880
AGCTCGCCGTACTCGCCGTCGTCGTCGATCTCCTCGATGATCTGCATGTGGTTGCCGTCCTCGTC
CACCATCATGTCGAGCAGGCCCTGGTCCAGGAAGCCGTCGTCGAGCGCGTACTCGCCCTCGACGT
AGTTGTCGCTGGCGCTGGCGTCGTCGCTGTCGTCGGCGAGCATCTCGTTGTCGTCCGAGAGCCCC
TCCAGCTCGTCGTCGTCCAGGCCTTCGTCCTCGGGCACCTCCTCGCCCAGCATCAACACCTCGAG
CTCCGGGTCGGCAAACTCGTCGGCAAACTCGTCGTCCTCCTCGGACTCCGTCTGCATGTCGTACA
TGCCCAACGTCAGGTTGCGGAAGAGGTTGTCGGTGGCGTCGTCGTCCTCCATGTCCACGTCGCCC
TCGTCGTCGTCGTCGTCGCCGTCGGCGCCCTCCTCGCGGTCGGCGCCCAAGAGGTCTGGGTACTC
GAGCTTCAGCTTCAGCAACTGGATGAGCGGCTTGAGGGTGCTCTT
Found at i:172664 original size:12 final size:12
Alignment explanation
Indices: 172647--172674 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
172637 CGAGCTCCGG
172647 GTCGGCAAACTC
1 GTCGGCAAACTC
172659 GTCGGCAAACTC
1 GTCGGCAAACTC
172671 GTCG
1 GTCG
172675 TCCTCCTCGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.21, C:0.32, G:0.29, T:0.18
Consensus pattern (12 bp):
GTCGGCAAACTC
Left flanking sequence: Indices 172147 -- 172646
GTGTCGTCGCCGTCGTCGGTGGCACGGCGGCGGCGCAACGGCGCCTGCTCGTCCTCGAAGGCGTC
GATCCACCCGTCAAAGTCGCCGTCGCCGTCGTCCACCGCCTCGTCGCCGTCGTCGCCGTCGAGCT
CGTCAAGATCGTCGAACCCGTCGAGCTCGTCAAACTCACGGTACTCGCCGTCACCGTCAAACTCG
CCGTCGTCGTCAAACTCGCCGTCGTCAAACCCGTCGTCGAGCTCGCCGTACTCGCCGTCGTCGTC
GATCTCCTCGATGATCTGCATGTGGTTGCCGTCCTCGTCCACCATCATGTCGAGCAGGCCCTGGT
CCAGGAAGCCGTCGTCGAGCGCGTACTCGCCCTCGACGTAGTTGTCGCTGGCGCTGGCGTCGTCG
CTGTCGTCGGCGAGCATCTCGTTGTCGTCCGAGAGCCCCTCCAGCTCGTCGTCGTCCAGGCCTTC
GTCCTCGGGCACCTCCTCGCCCAGCATCAACACCTCGAGCTCCGG
Right flanking sequence: Indices 172675 -- 173174
TCCTCCTCGGACTCCGTCTGCATGTCGTACATGCCCAACGTCAGGTTGCGGAAGAGGTTGTCGGT
GGCGTCGTCGTCCTCCATGTCCACGTCGCCCTCGTCGTCGTCGTCGTCGCCGTCGGCGCCCTCCT
CGCGGTCGGCGCCCAAGAGGTCTGGGTACTCGAGCTTCAGCTTCAGCAACTGGATGAGCGGCTTG
AGGGTGCTCTTGGTGACCTTGTCCCACTCGGGGAAGTTGAGGTCCATGGCTCCCACCACCGCCAC
CACCGTGGCCGGCACCTCGCGCTCGAGCAACGCCTTGGCCAAGTAGTACTGGTCCCACTTGACCG
CGGCCTTGTCGAGGAGCGGCATCCCCAGCTCGCGGAACTTGGGCAGCACCACCAGCGCCACCATC
GCCAAGATGTCCGCCACCTTGCCGTACTTGGTGCGCGCGGGCTCGTGGGCCAGCGCCATCGTCTC
CTCGACGATCTTCAGCGCGATGTCGACAAAGTACTTGCGGATGAT
Found at i:173533 original size:15 final size:15
Alignment explanation
Indices: 173515--173544 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
173505 GGTGGCCTTG
173515 GGGTCGGTCGCATTA
1 GGGTCGGTCGCATTA
*
173530 GGGTCGGTGGCATTA
1 GGGTCGGTCGCATTA
173545 ACGCCAGGCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.17, G:0.43, T:0.27
Consensus pattern (15 bp):
GGGTCGGTCGCATTA
Left flanking sequence: Indices 173015 -- 173514
GCGGCATCCCCAGCTCGCGGAACTTGGGCAGCACCACCAGCGCCACCATCGCCAAGATGTCCGCC
ACCTTGCCGTACTTGGTGCGCGCGGGCTCGTGGGCCAGCGCCATCGTCTCCTCGACGATCTTCAG
CGCGATGTCGACAAAGTACTTGCGGATGATGGCCATGTCCGGGTCCTCGTCGCGTGGCTGGGGCG
CGGTGGCGGTCACCGGCGTCGACACGAGCGCGAGCATCGCCATCTTCGCCAACAGCGCCACCGCG
GTGCGGCGCTCCTTGACCAACGGGTCGGTCACCGGGGCAAACAGCTGCGACGGGATGAGCTGGTG
CACGAAGTAGTTGAGCGCGGTGCTGCGGGGCTTGGGCTCGGCCGGGTGGGGCGCCCGTTTCGAAA
ACGTGAGCAACTCGAGCTTGGCTTGCATGTACAGCCCCACCATCTCGGTGATGCACAACGTGAGG
AACAGCACGTACCCGAAGTTGAGGTTCAGCCAGACGGTGGCCTTG
Right flanking sequence: Indices 173545 -- 174044
ACGCCAGGCTTGGAGTCGGTGGAGCCAGAAGCATTAGTGTCACTGTCCTTGTCTTTGTCCTTACC
CTTTTCCTTGTCCTTCCCCTTACCCTTCTCCTTTTCCTTCTCCTTCACTGGCGTGTGGCTCCAGT
CACGGCGCGTGGCCTTCATGAGCTCGCACACCAACAAGTGGACCACCCCCGTGGACGCAAACCGC
GGCTTGGGCGCAGGCGGCGGCGGCGCGGCCTCGGGCGCCTTGGTGACCACGATCTTGCCCGAGCC
AAACACGTCGTCGTCGTTCAGCCCGTCGTAGCCCTCGAGCCGCACCTCGCGCGCAAGCGTGTCCA
CGTACACCTCGGGCTGGCGCAACACCATCGCCAGCGTCTGGCGGAGCACCAGCTGGAGGTCGCGG
CGCGGCCGTGGTGCCAGCGCGGCAAACACCGTGGCCACCAACTCCAGCAGCATCACCTGGCCCAC
CACCGCCGCCAGCTCGAAGCACTGGCGGAACAACACCACCGCCAC
Found at i:173612 original size:18 final size:18
Alignment explanation
Indices: 173591--173630 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
173581 GTGTCACTGT
*
173591 CCTTGTCTTTGTCCTTAC
1 CCTTGTCCTTGTCCTTAC
* *
173609 CCTTTTCCTTGTCCTTCC
1 CCTTGTCCTTGTCCTTAC
173627 CCTT
1 CCTT
173631 ACCCTTCTCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.03, C:0.40, G:0.07, T:0.50
Consensus pattern (18 bp):
CCTTGTCCTTGTCCTTAC
Left flanking sequence: Indices 173091 -- 173590
CTTGGTGCGCGCGGGCTCGTGGGCCAGCGCCATCGTCTCCTCGACGATCTTCAGCGCGATGTCGA
CAAAGTACTTGCGGATGATGGCCATGTCCGGGTCCTCGTCGCGTGGCTGGGGCGCGGTGGCGGTC
ACCGGCGTCGACACGAGCGCGAGCATCGCCATCTTCGCCAACAGCGCCACCGCGGTGCGGCGCTC
CTTGACCAACGGGTCGGTCACCGGGGCAAACAGCTGCGACGGGATGAGCTGGTGCACGAAGTAGT
TGAGCGCGGTGCTGCGGGGCTTGGGCTCGGCCGGGTGGGGCGCCCGTTTCGAAAACGTGAGCAAC
TCGAGCTTGGCTTGCATGTACAGCCCCACCATCTCGGTGATGCACAACGTGAGGAACAGCACGTA
CCCGAAGTTGAGGTTCAGCCAGACGGTGGCCTTGGGGTCGGTCGCATTAGGGTCGGTGGCATTAA
CGCCAGGCTTGGAGTCGGTGGAGCCAGAAGCATTAGTGTCACTGT
Right flanking sequence: Indices 173631 -- 174130
ACCCTTCTCCTTTTCCTTCTCCTTCACTGGCGTGTGGCTCCAGTCACGGCGCGTGGCCTTCATGA
GCTCGCACACCAACAAGTGGACCACCCCCGTGGACGCAAACCGCGGCTTGGGCGCAGGCGGCGGC
GGCGCGGCCTCGGGCGCCTTGGTGACCACGATCTTGCCCGAGCCAAACACGTCGTCGTCGTTCAG
CCCGTCGTAGCCCTCGAGCCGCACCTCGCGCGCAAGCGTGTCCACGTACACCTCGGGCTGGCGCA
ACACCATCGCCAGCGTCTGGCGGAGCACCAGCTGGAGGTCGCGGCGCGGCCGTGGTGCCAGCGCG
GCAAACACCGTGGCCACCAACTCCAGCAGCATCACCTGGCCCACCACCGCCGCCAGCTCGAAGCA
CTGGCGGAACAACACCACCGCCACCTTCTTGAACTCGTCGGTGTCGTCGCACAGGTCCTCGTGCG
CCTTGAACGCCGCCAACAACTCCAGCAAGATGCCCAGGGTGGCGA
Found at i:173617 original size:12 final size:12
Alignment explanation
Indices: 173602--173654 Score: 52
Period size: 12 Copynumber: 4.4 Consensus size: 12
173592 CTTGTCTTTG
*
173602 TCCTTACCCTTT
1 TCCTTACCCTTC
**
173614 TCCTTGTCCTTC
1 TCCTTACCCTTC
*
173626 CCCTTACCCTTC
1 TCCTTACCCTTC
**
173638 TCCTTTTCCTTC
1 TCCTTACCCTTC
173650 TCCTT
1 TCCTT
173655 CACTGGCGTG
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
12 32 1.00
ACGTcount: A:0.04, C:0.45, G:0.02, T:0.49
Consensus pattern (12 bp):
TCCTTACCCTTC
Left flanking sequence: Indices 173102 -- 173601
CGGGCTCGTGGGCCAGCGCCATCGTCTCCTCGACGATCTTCAGCGCGATGTCGACAAAGTACTTG
CGGATGATGGCCATGTCCGGGTCCTCGTCGCGTGGCTGGGGCGCGGTGGCGGTCACCGGCGTCGA
CACGAGCGCGAGCATCGCCATCTTCGCCAACAGCGCCACCGCGGTGCGGCGCTCCTTGACCAACG
GGTCGGTCACCGGGGCAAACAGCTGCGACGGGATGAGCTGGTGCACGAAGTAGTTGAGCGCGGTG
CTGCGGGGCTTGGGCTCGGCCGGGTGGGGCGCCCGTTTCGAAAACGTGAGCAACTCGAGCTTGGC
TTGCATGTACAGCCCCACCATCTCGGTGATGCACAACGTGAGGAACAGCACGTACCCGAAGTTGA
GGTTCAGCCAGACGGTGGCCTTGGGGTCGGTCGCATTAGGGTCGGTGGCATTAACGCCAGGCTTG
GAGTCGGTGGAGCCAGAAGCATTAGTGTCACTGTCCTTGTCTTTG
Right flanking sequence: Indices 173655 -- 174154
CACTGGCGTGTGGCTCCAGTCACGGCGCGTGGCCTTCATGAGCTCGCACACCAACAAGTGGACCA
CCCCCGTGGACGCAAACCGCGGCTTGGGCGCAGGCGGCGGCGGCGCGGCCTCGGGCGCCTTGGTG
ACCACGATCTTGCCCGAGCCAAACACGTCGTCGTCGTTCAGCCCGTCGTAGCCCTCGAGCCGCAC
CTCGCGCGCAAGCGTGTCCACGTACACCTCGGGCTGGCGCAACACCATCGCCAGCGTCTGGCGGA
GCACCAGCTGGAGGTCGCGGCGCGGCCGTGGTGCCAGCGCGGCAAACACCGTGGCCACCAACTCC
AGCAGCATCACCTGGCCCACCACCGCCGCCAGCTCGAAGCACTGGCGGAACAACACCACCGCCAC
CTTCTTGAACTCGTCGGTGTCGTCGCACAGGTCCTCGTGCGCCTTGAACGCCGCCAACAACTCCA
GCAAGATGCCCAGGGTGGCGATGGCGTGGTTGTACTCGGGCAGCG
Found at i:173630 original size:24 final size:24
Alignment explanation
Indices: 173603--173654 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
173593 TTGTCTTTGT
*
173603 CCTTACCCTTTTCCTTGTCCTTCC
1 CCTTACCCTTCTCCTTGTCCTTCC
* *
173627 CCTTACCCTTCTCCTTTTCCTTCT
1 CCTTACCCTTCTCCTTGTCCTTCC
173651 CCTT
1 CCTT
173655 CACTGGCGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.04, C:0.46, G:0.02, T:0.48
Consensus pattern (24 bp):
CCTTACCCTTCTCCTTGTCCTTCC
Left flanking sequence: Indices 173103 -- 173602
GGGCTCGTGGGCCAGCGCCATCGTCTCCTCGACGATCTTCAGCGCGATGTCGACAAAGTACTTGC
GGATGATGGCCATGTCCGGGTCCTCGTCGCGTGGCTGGGGCGCGGTGGCGGTCACCGGCGTCGAC
ACGAGCGCGAGCATCGCCATCTTCGCCAACAGCGCCACCGCGGTGCGGCGCTCCTTGACCAACGG
GTCGGTCACCGGGGCAAACAGCTGCGACGGGATGAGCTGGTGCACGAAGTAGTTGAGCGCGGTGC
TGCGGGGCTTGGGCTCGGCCGGGTGGGGCGCCCGTTTCGAAAACGTGAGCAACTCGAGCTTGGCT
TGCATGTACAGCCCCACCATCTCGGTGATGCACAACGTGAGGAACAGCACGTACCCGAAGTTGAG
GTTCAGCCAGACGGTGGCCTTGGGGTCGGTCGCATTAGGGTCGGTGGCATTAACGCCAGGCTTGG
AGTCGGTGGAGCCAGAAGCATTAGTGTCACTGTCCTTGTCTTTGT
Right flanking sequence: Indices 173655 -- 174154
CACTGGCGTGTGGCTCCAGTCACGGCGCGTGGCCTTCATGAGCTCGCACACCAACAAGTGGACCA
CCCCCGTGGACGCAAACCGCGGCTTGGGCGCAGGCGGCGGCGGCGCGGCCTCGGGCGCCTTGGTG
ACCACGATCTTGCCCGAGCCAAACACGTCGTCGTCGTTCAGCCCGTCGTAGCCCTCGAGCCGCAC
CTCGCGCGCAAGCGTGTCCACGTACACCTCGGGCTGGCGCAACACCATCGCCAGCGTCTGGCGGA
GCACCAGCTGGAGGTCGCGGCGCGGCCGTGGTGCCAGCGCGGCAAACACCGTGGCCACCAACTCC
AGCAGCATCACCTGGCCCACCACCGCCGCCAGCTCGAAGCACTGGCGGAACAACACCACCGCCAC
CTTCTTGAACTCGTCGGTGTCGTCGCACAGGTCCTCGTGCGCCTTGAACGCCGCCAACAACTCCA
GCAAGATGCCCAGGGTGGCGATGGCGTGGTTGTACTCGGGCAGCG
Found at i:173636 original size:18 final size:18
Alignment explanation
Indices: 173599--173642 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
173589 GTCCTTGTCT
**
173599 TTGTCCTTACCCTTTTCC
1 TTGTCCTTACCCTTACCC
*
173617 TTGTCCTTCCCCTTACCC
1 TTGTCCTTACCCTTACCC
*
173635 TTCTCCTT
1 TTGTCCTT
173643 TTCCTTCTCC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.05, C:0.43, G:0.05, T:0.48
Consensus pattern (18 bp):
TTGTCCTTACCCTTACCC
Left flanking sequence: Indices 173099 -- 173598
GCGCGGGCTCGTGGGCCAGCGCCATCGTCTCCTCGACGATCTTCAGCGCGATGTCGACAAAGTAC
TTGCGGATGATGGCCATGTCCGGGTCCTCGTCGCGTGGCTGGGGCGCGGTGGCGGTCACCGGCGT
CGACACGAGCGCGAGCATCGCCATCTTCGCCAACAGCGCCACCGCGGTGCGGCGCTCCTTGACCA
ACGGGTCGGTCACCGGGGCAAACAGCTGCGACGGGATGAGCTGGTGCACGAAGTAGTTGAGCGCG
GTGCTGCGGGGCTTGGGCTCGGCCGGGTGGGGCGCCCGTTTCGAAAACGTGAGCAACTCGAGCTT
GGCTTGCATGTACAGCCCCACCATCTCGGTGATGCACAACGTGAGGAACAGCACGTACCCGAAGT
TGAGGTTCAGCCAGACGGTGGCCTTGGGGTCGGTCGCATTAGGGTCGGTGGCATTAACGCCAGGC
TTGGAGTCGGTGGAGCCAGAAGCATTAGTGTCACTGTCCTTGTCT
Right flanking sequence: Indices 173643 -- 174142
TTCCTTCTCCTTCACTGGCGTGTGGCTCCAGTCACGGCGCGTGGCCTTCATGAGCTCGCACACCA
ACAAGTGGACCACCCCCGTGGACGCAAACCGCGGCTTGGGCGCAGGCGGCGGCGGCGCGGCCTCG
GGCGCCTTGGTGACCACGATCTTGCCCGAGCCAAACACGTCGTCGTCGTTCAGCCCGTCGTAGCC
CTCGAGCCGCACCTCGCGCGCAAGCGTGTCCACGTACACCTCGGGCTGGCGCAACACCATCGCCA
GCGTCTGGCGGAGCACCAGCTGGAGGTCGCGGCGCGGCCGTGGTGCCAGCGCGGCAAACACCGTG
GCCACCAACTCCAGCAGCATCACCTGGCCCACCACCGCCGCCAGCTCGAAGCACTGGCGGAACAA
CACCACCGCCACCTTCTTGAACTCGTCGGTGTCGTCGCACAGGTCCTCGTGCGCCTTGAACGCCG
CCAACAACTCCAGCAAGATGCCCAGGGTGGCGATGGCGTGGTTGT
Found at i:179072 original size:10 final size:10
Alignment explanation
Indices: 179050--179089 Score: 55
Period size: 10 Copynumber: 4.1 Consensus size: 10
179040 GCGCGGGAGA
179050 GGTGTAG-GG
1 GGTGTAGAGG
179059 GGTGTAGAGG
1 GGTGTAGAGG
* *
179069 GGTGTTGATG
1 GGTGTAGAGG
179079 GGTGTAGAGG
1 GGTGTAGAGG
179089 G
1 G
179090 AAGGCTACGT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
9 7 0.27
10 19 0.73
ACGTcount: A:0.15, C:0.00, G:0.60, T:0.25
Consensus pattern (10 bp):
GGTGTAGAGG
Left flanking sequence: Indices 178550 -- 179049
GGGGGAACTCGTCCCCCAAGTGGTATTTGGCCACCATCTCCTCCAACAATTCGTCGAACCGGTTG
AGCACCGGCACCCACTGGAGCAAGTCGGCCCGCGGGCGGTTCCACACCGCGTGCTGGCGCACCAA
CGCGGGCAATTCGGCCACGGGGACCTCGGAAAACGTGTCGATCAACTCTCGGAGCGCCGGGGCCA
TCTCCATCCGCACCAAGTGGTCGCGTTTGGTGATGATCATGTTGTTGGGGGCAGGAGGAATCTCG
GGGTTAAGGGTGGCAAACGACACGGCAGTGCGGTAGCTTGGTTACACACACAGAATGCTAGCAAG
GCAACGGTTAACGAAAAGAAACGGATGTGGCTGTTGTCGGCCGCAGGCGTTGTCGAGTCGTAGGT
AGTCGCTGTTTAGAACTTGCAATTTGATGCACTCCTCAAGCAATGAGGGTTGTGCGCACTACTGT
GTGCATCCGGTGGGAACCGGGAGCGGGAAGCAATTGCGCGGGAGA
Right flanking sequence: Indices 179090 -- 179589
AAGGCTACGTAGGCTTTACTTGGCTGCGGTGTTACTGGCTGCCCAACATTTGCAGCCGGGTAAGC
CCCACACGGTGCCTGAAAAGAGATGAAGTAGCGAGGGGTGGTTTCGAATGGGCAGTGTATTTTGT
TACAGGGGTCATTGGGGGCTGATTCTAGCGGTGGGTATTGGCTAACGTGGGCTAACGGTGGGCTA
GCGGTGGGTTATCGGGGCGGGCTGACGGTGTGGCTGCGAGCTAACGGTGCGAGCTAACGGTGCGG
GTTAACGGTGGCCAACCGTATATGATTCGAGAACCCTTACGTAAGCATGGGTGAGACCAGTAGAG
ACTAGAGAACCAAGCACGTTAAGCTGATGATGCTGGGGTTTATCAAGAGCTTCCCTACAAAAATC
TTTTGGAACCCAAACGAGCATTCGCCTGTGTTTGTTTGCCCGGATGGCATACTCGGGTAGGGTTT
TCTCAAATAGGCAACTTGTACGTGCTGTATGATGAGTGGTACCAG
Found at i:179282 original size:11 final size:11
Alignment explanation
Indices: 179259--179292 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
179249 GGTGGGTATT
179259 GGCTAAC-GTG
1 GGCTAACGGTG
179269 GGCTAACGGTG
1 GGCTAACGGTG
*
179280 GGCTAGCGGTG
1 GGCTAACGGTG
179291 GG
1 GG
179293 TTATCGGGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 7 0.32
11 15 0.68
ACGTcount: A:0.15, C:0.18, G:0.50, T:0.18
Consensus pattern (11 bp):
GGCTAACGGTG
Left flanking sequence: Indices 178759 -- 179258
AAGTGGTCGCGTTTGGTGATGATCATGTTGTTGGGGGCAGGAGGAATCTCGGGGTTAAGGGTGGC
AAACGACACGGCAGTGCGGTAGCTTGGTTACACACACAGAATGCTAGCAAGGCAACGGTTAACGA
AAAGAAACGGATGTGGCTGTTGTCGGCCGCAGGCGTTGTCGAGTCGTAGGTAGTCGCTGTTTAGA
ACTTGCAATTTGATGCACTCCTCAAGCAATGAGGGTTGTGCGCACTACTGTGTGCATCCGGTGGG
AACCGGGAGCGGGAAGCAATTGCGCGGGAGAGGTGTAGGGGGTGTAGAGGGGTGTTGATGGGTGT
AGAGGGAAGGCTACGTAGGCTTTACTTGGCTGCGGTGTTACTGGCTGCCCAACATTTGCAGCCGG
GTAAGCCCCACACGGTGCCTGAAAAGAGATGAAGTAGCGAGGGGTGGTTTCGAATGGGCAGTGTA
TTTTGTTACAGGGGTCATTGGGGGCTGATTCTAGCGGTGGGTATT
Right flanking sequence: Indices 179293 -- 179792
TTATCGGGGCGGGCTGACGGTGTGGCTGCGAGCTAACGGTGCGAGCTAACGGTGCGGGTTAACGG
TGGCCAACCGTATATGATTCGAGAACCCTTACGTAAGCATGGGTGAGACCAGTAGAGACTAGAGA
ACCAAGCACGTTAAGCTGATGATGCTGGGGTTTATCAAGAGCTTCCCTACAAAAATCTTTTGGAA
CCCAAACGAGCATTCGCCTGTGTTTGTTTGCCCGGATGGCATACTCGGGTAGGGTTTTCTCAAAT
AGGCAACTTGTACGTGCTGTATGATGAGTGGTACCAGAGACAAACAGGCACGTTGAGCCCACTAG
AAGCCCACTAGAGCCTCAATTCCAGCCCCTACAGCCCCACTAGAATCACACATTCAGCCCAATTA
CCTTCGACCAATTGCCTCGACCACTACCCTAATCTACCCAGTGATCTCCTACTTAGTAAAAGCTT
AAGATAAAATGTAGAAGGGATAGTGGAAATAGCGGAAATAGTCGT
Found at i:179337 original size:13 final size:13
Alignment explanation
Indices: 179319--179359 Score: 64
Period size: 13 Copynumber: 3.2 Consensus size: 13
179309 ACGGTGTGGC
179319 TGCGAGCTAACGG
1 TGCGAGCTAACGG
179332 TGCGAGCTAACGG
1 TGCGAGCTAACGG
* *
179345 TGCGGGTTAACGG
1 TGCGAGCTAACGG
179358 TG
1 TG
179360 GCCAACCGTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.20, C:0.20, G:0.41, T:0.20
Consensus pattern (13 bp):
TGCGAGCTAACGG
Left flanking sequence: Indices 178819 -- 179318
GTGGCAAACGACACGGCAGTGCGGTAGCTTGGTTACACACACAGAATGCTAGCAAGGCAACGGTT
AACGAAAAGAAACGGATGTGGCTGTTGTCGGCCGCAGGCGTTGTCGAGTCGTAGGTAGTCGCTGT
TTAGAACTTGCAATTTGATGCACTCCTCAAGCAATGAGGGTTGTGCGCACTACTGTGTGCATCCG
GTGGGAACCGGGAGCGGGAAGCAATTGCGCGGGAGAGGTGTAGGGGGTGTAGAGGGGTGTTGATG
GGTGTAGAGGGAAGGCTACGTAGGCTTTACTTGGCTGCGGTGTTACTGGCTGCCCAACATTTGCA
GCCGGGTAAGCCCCACACGGTGCCTGAAAAGAGATGAAGTAGCGAGGGGTGGTTTCGAATGGGCA
GTGTATTTTGTTACAGGGGTCATTGGGGGCTGATTCTAGCGGTGGGTATTGGCTAACGTGGGCTA
ACGGTGGGCTAGCGGTGGGTTATCGGGGCGGGCTGACGGTGTGGC
Right flanking sequence: Indices 179360 -- 179859
GCCAACCGTATATGATTCGAGAACCCTTACGTAAGCATGGGTGAGACCAGTAGAGACTAGAGAAC
CAAGCACGTTAAGCTGATGATGCTGGGGTTTATCAAGAGCTTCCCTACAAAAATCTTTTGGAACC
CAAACGAGCATTCGCCTGTGTTTGTTTGCCCGGATGGCATACTCGGGTAGGGTTTTCTCAAATAG
GCAACTTGTACGTGCTGTATGATGAGTGGTACCAGAGACAAACAGGCACGTTGAGCCCACTAGAA
GCCCACTAGAGCCTCAATTCCAGCCCCTACAGCCCCACTAGAATCACACATTCAGCCCAATTACC
TTCGACCAATTGCCTCGACCACTACCCTAATCTACCCAGTGATCTCCTACTTAGTAAAAGCTTAA
GATAAAATGTAGAAGGGATAGTGGAAATAGCGGAAATAGTCGTGTGTCTAGCTGGGGGGCCGCAG
GCGGCGCCCCCCAGACCCCCCAACGCTTTGTCGCTACCACCTCCC
Found at i:182479 original size:22 final size:22
Alignment explanation
Indices: 182391--182511 Score: 178
Period size: 21 Copynumber: 5.6 Consensus size: 22
182381 TGATTTATAG
*
182391 ACATTAGACATACCGAATTG--C
1 ACATTAGATATACCGAA-TGCAC
* *
182412 ACGTTAGACATACCGAAT-CAC
1 ACATTAGATATACCGAATGCAC
182433 ACATTAGATATACCGAAT-CAC
1 ACATTAGATATACCGAATGCAC
182454 ACATTAGATATACCGAATGCAC
1 ACATTAGATATACCGAATGCAC
182476 ACATTAGATATACCGAATGCAC
1 ACATTAGATATACCGAATGCAC
182498 ACATTAGATATACC
1 ACATTAGATATACC
182512 CACCTACGCA
Statistics
Matches: 94, Mismatches: 3, Indels: 5
0.92 0.03 0.05
Matches are distributed among these distances:
20 1 0.01
21 54 0.57
22 39 0.41
ACGTcount: A:0.40, C:0.24, G:0.12, T:0.23
Consensus pattern (22 bp):
ACATTAGATATACCGAATGCAC
Left flanking sequence: Indices 181891 -- 182390
GCTGAAGATCCACTGCATCTTCTCGCGGCAGCGCCACCCCGTCACCGCGCACTCGATCCACGAGC
TGCCGGCGCTGGGGCTCGAGGACATGTGGTTGCTCGACGTGTCCACCAACTCGTGCTTTGTCAAC
AACTTCAAGCTCGGGCGGGGCAAGAAGGTGAAGCTCTACCACGGCGACCGGGTGTTTTTCTTCAA
GGACCACATCGAGCACGAGGAAATGGGGTTTACGGTGAACATCCGCGACGGCACAGGCCTCTTCA
AGGGCGGCGAGCGCATCGACGACGTCAACGACGACCAGGAGGTGGTGGACCAGAACGAGTACGAC
GTGCGGCTCCGGGCCAAGCCCGTCCAGGAGCCCGCGGGCTCGTCTGGCGCCTACGGAGGAAACTT
CAATGATCGTTTGCGCAAGCAGCGTCGCCAGGACTCGGCCGCCCCCGTTAAACGGGCGAGCCTCG
AGCTGAGCCAGCCGCGCCTGCGCACTTAATTACGGTGATTTATAG
Right flanking sequence: Indices 182512 -- 183011
CACCTACGCACTTGTTAATGTTTGGCCTTTGTTCGCACTGTTTGGCCATAGTTCGCACTGTTTAG
CCTTAGTTCCCACTGTGTTTAGCCTGTTCGCACTGTTTGGTACGCGGTCGTGCCACGCCCAATCG
ATACCAATGCGGCCATCGCGCAGCTCATCGCAGCCACCACCGAGACCAGTGCATATCCACAGCTT
CATACCCGTCCAATGTCCAGTAGTAGACCGAGGGTAGCGCCGTTGAAGCATGCCACCTTACCCAA
CCAGACCACTCCCGAGCAGCGGTACTGGCGGGGGTTCACCAATCCCCAGCTCATCAAGGAGAGCC
GTGCGGTCAACCACATCGAATTCAACCCGGTGACGCAAGACTTTGCCGTGGTGTCGTCCACCCGC
ATCCAGGTGTTCTCGGCCAAGACCCGCCAGGTGATCAAAACGTTCTCCCGGTTCAAGGACACCGT
GCACACCAGTGCCTACCGGTACGACGGCAAGCTCATGGCCGCTTC
Found at i:182555 original size:20 final size:20
Alignment explanation
Indices: 182530--182616 Score: 97
Period size: 20 Copynumber: 4.3 Consensus size: 20
182520 CACTTGTTAA
*
182530 TGTTTGGCCTTTGTTCGCAC
1 TGTTTGGCCTTAGTTCGCAC
*
182550 TGTTTGGCCATAGTTCGCAC
1 TGTTTGGCCTTAGTTCGCAC
* *
182570 TGTTTAGCCTTAGTTCCCAC
1 TGTTTGGCCTTAGTTCGCAC
*
182590 TGTGTTTAGCC-T-GTTCGCAC
1 --TGTTTGGCCTTAGTTCGCAC
182610 TGTTTGG
1 TGTTTGG
182617 TACGCGGTCG
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
18 6 0.10
20 42 0.72
21 1 0.02
22 9 0.16
ACGTcount: A:0.10, C:0.24, G:0.24, T:0.41
Consensus pattern (20 bp):
TGTTTGGCCTTAGTTCGCAC
Left flanking sequence: Indices 182030 -- 182529
CTCGGGCGGGGCAAGAAGGTGAAGCTCTACCACGGCGACCGGGTGTTTTTCTTCAAGGACCACAT
CGAGCACGAGGAAATGGGGTTTACGGTGAACATCCGCGACGGCACAGGCCTCTTCAAGGGCGGCG
AGCGCATCGACGACGTCAACGACGACCAGGAGGTGGTGGACCAGAACGAGTACGACGTGCGGCTC
CGGGCCAAGCCCGTCCAGGAGCCCGCGGGCTCGTCTGGCGCCTACGGAGGAAACTTCAATGATCG
TTTGCGCAAGCAGCGTCGCCAGGACTCGGCCGCCCCCGTTAAACGGGCGAGCCTCGAGCTGAGCC
AGCCGCGCCTGCGCACTTAATTACGGTGATTTATAGACATTAGACATACCGAATTGCACGTTAGA
CATACCGAATCACACATTAGATATACCGAATCACACATTAGATATACCGAATGCACACATTAGAT
ATACCGAATGCACACATTAGATATACCCACCTACGCACTTGTTAA
Right flanking sequence: Indices 182617 -- 183116
TACGCGGTCGTGCCACGCCCAATCGATACCAATGCGGCCATCGCGCAGCTCATCGCAGCCACCAC
CGAGACCAGTGCATATCCACAGCTTCATACCCGTCCAATGTCCAGTAGTAGACCGAGGGTAGCGC
CGTTGAAGCATGCCACCTTACCCAACCAGACCACTCCCGAGCAGCGGTACTGGCGGGGGTTCACC
AATCCCCAGCTCATCAAGGAGAGCCGTGCGGTCAACCACATCGAATTCAACCCGGTGACGCAAGA
CTTTGCCGTGGTGTCGTCCACCCGCATCCAGGTGTTCTCGGCCAAGACCCGCCAGGTGATCAAAA
CGTTCTCCCGGTTCAAGGACACCGTGCACACCAGTGCCTACCGGTACGACGGCAAGCTCATGGCC
GCTTCTGACGCCACCGGCCTCGTGCTGATCTACGACGCATACAACCCGCGGGCCCAGTTGGTCAA
CATCACCCCGCTGTCCCACCCGAGTCACGCCGTCAAGTTCCACCC
Found at i:198544 original size:9 final size:9
Alignment explanation
Indices: 198530--198555 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
198520 GTCGCCGTTG
198530 AGGGTGGCC
1 AGGGTGGCC
198539 AGGGTGGCC
1 AGGGTGGCC
198548 AGGGTGGC
1 AGGGTGGC
198556 GGTGGCCGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.12, C:0.19, G:0.58, T:0.12
Consensus pattern (9 bp):
AGGGTGGCC
Left flanking sequence: Indices 198030 -- 198529
CGCACGACCTTTGGTCACCTAACACTACGGCCAGTCCTATTAGTATGTGTATTAATCGTGCTATG
GGGCGAGACCCCGGTGCAAGTAGGCTAAGCCGCGTGGGCGGCGATGAGTCGATTATGCAAGTCTA
AGGCAACCCTTTGGCAGCGCGGTCCCATTTTTCTTCAGCCACCCATCCAGCATTAATTACGTTGA
CCGCGTCCTGGAGATTCAAGTGCTTGTTGCTCTTGAGCGCCCGGCCCTTATCCACCAACTGGGTG
TATATTTTGGCGTACACGTCGCGAGGCACGTTGGCAAGGCTCGTTTCCTTGCGCCGGCGAGCCAC
CTTGTCGGGGTCGGTGCAGTGGGTCCACTTGGCGCGCCGGTACTCCCAGAGACTGGCGCCAATGT
TGGCTTGCTCGTCCACGGTGCCGTCAGACATGGTGCCCAGGCTCAGAAGCATCTCCACCCGCATT
TTGCACACGTCGACGTCGCGGTACAGCACGTCATCGTCGCCGTTG
Right flanking sequence: Indices 198556 -- 199055
GGTGGCCGAGGTGAGATCAGGCACCGGCGAGTCGTTGGCGCTGTCGTCCACCATCGCCAACTTGT
CCAACAGTTTGTACTTTTTGTAGCGCTGCAAAAAAATCTCTTCGGCCAGGGTGTACCCCTTGTTG
GTGCGCATCAACTTGGAAAGCGCCTCGTCGTGGTCCTGGTCCTCAAACAAGCTCTCGATGATCAG
CTCGTCGCTGTAGTCTTCGTGGGCAAGCGAGGTGCGAAGACGGTCGAAAATTTGGTTGCACTCCA
GCGCCACCCGGCGGAAAAACAGCGGTTTGCGGGGGAGCGGGCGCGAGCTGTGGGTGGCCGAGGCC
AGAGTCTGCTTGCTCGGGTGGGATGCTGGCGTGGCAGCTCGGGGGCCCAGCTGGATCGTCGTTCC
GTGGGTGCCGGTGGTGGGGGCCGAGGTGGTTGACGACGGAGTGGGGGTGGGCGAGTGTGGAGACT
TCACCCGGGACATTTAGCGGTGCGCTCTACTAGTGCAACGACGAT
Found at i:215288 original size:18 final size:18
Alignment explanation
Indices: 215267--215323 Score: 60
Period size: 18 Copynumber: 3.2 Consensus size: 18
215257 CGGCCTCGCG
*
215267 TTCGGCCTTTGCCTTTGC
1 TTCGGCCTTTGCCTTGGC
**
215285 TTCGGCCGCTGCCTTGGC
1 TTCGGCCTTTGCCTTGGC
* * *
215303 CTCTGCCTTGGCCTTGGC
1 TTCGGCCTTTGCCTTGGC
215321 TTC
1 TTC
215324 AGCTTCAGCT
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.00, C:0.37, G:0.26, T:0.37
Consensus pattern (18 bp):
TTCGGCCTTTGCCTTGGC
Left flanking sequence: Indices 214767 -- 215266
CAAGTGAACCCAATAATATACGGGCACTTTTTGACGAAACGGGCAGTCAAGTAGTATTCAAAATC
GGGGATTTTTTGGAGCACCATACACGCCAAACGGGCGATAGGCAACGCTGCGGTGAGCTTGACAC
CGGCCTCGGTTTCTGCCTGGTCCACCACCATCTTGGCAAGGTGATTTAGCAAAAACTTGAAGGCC
ATAGGACTGGCCTGGGCCTGTTCGAGAATATTGAAAAGCGTGGCTGCCACCTGTTGCAACTGCTG
CATCAGATCCAGCAACTGGCCAAGCATTTTATTCAACTGGCGTTTATAGGGATTGACCGCCTTTT
TGAGCCCCGGGTCGTTAAGCACTTTCGTCTTGACATCCTGTTTGATAGTGGCAATGGTATCCTTG
TAGGCAAAGTATTCGTGTTCTACACGAAGGAAGTTGGTGATGCTCTTGTTTTGTTCCTTGGCGGC
TTCCTTGGCGGCCTTGCGTTCGGCCTTCTTCTCCGCGGCCTCGCG
Right flanking sequence: Indices 215324 -- 215823
AGCTTCAGCTTTTGCTTTGGCCTCTGCTTCGGCCTTTCGCTTTGCCTCCTCTTTCTTTCGTGCCT
CCTCTCGCTCTCGAGCTCGTCTCTCCTGCTCGAGTCGGCGTTGGCGCTCGTCTTCTAGCCGCTGC
GCTTCGTTCTGGAGCACGGACTTGGTCATAGCCTCCATGCGCTGTAGCCGAGCTGTCGCCTGCGC
CGTGAGCGTGTCGATTTGTGTTTTGGAGATGTCGTCAATTACCTCAGCCAACTGTTTTGAGATGT
CAACTCGCGAGGTTTCCTGAGAGCCTTTGGTTTCGTTCAATTGTCGTAGCTTCTCGTGAAATGTG
GCGAGCGACGTTGGAGTCATCACATTCAAGTGGACTTGCATCTGCTGGGAGAGGTCGTGGACCAC
TGCCTCCGACGGGACGGGACCGAGGATAACCATGCTCGACTCTGTGGTGGGTGTTCGTGGGACTA
GCCCGTCGTTTTGTCGGGTGTTTTTGGTGCGTTCAATCGAGAGTT
Found at i:215352 original size:24 final size:25
Alignment explanation
Indices: 215316--215371 Score: 62
Period size: 24 Copynumber: 2.3 Consensus size: 25
215306 TGCCTTGGCC
* *
215316 TTGGCTTCAGCTTCAG-CTTTTGCT
1 TTGGCCTCAGCTTCAGCCTTTCGCT
* *
215340 TTGGCCTCTGCTTCGGCCTTTCGCT
1 TTGGCCTCAGCTTCAGCCTTTCGCT
215365 TT-GCCTC
1 TTGGCCTC
215372 CTCTTTCTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 18 0.67
25 9 0.33
ACGTcount: A:0.04, C:0.32, G:0.21, T:0.43
Consensus pattern (25 bp):
TTGGCCTCAGCTTCAGCCTTTCGCT
Left flanking sequence: Indices 214816 -- 215315
AGTAGTATTCAAAATCGGGGATTTTTTGGAGCACCATACACGCCAAACGGGCGATAGGCAACGCT
GCGGTGAGCTTGACACCGGCCTCGGTTTCTGCCTGGTCCACCACCATCTTGGCAAGGTGATTTAG
CAAAAACTTGAAGGCCATAGGACTGGCCTGGGCCTGTTCGAGAATATTGAAAAGCGTGGCTGCCA
CCTGTTGCAACTGCTGCATCAGATCCAGCAACTGGCCAAGCATTTTATTCAACTGGCGTTTATAG
GGATTGACCGCCTTTTTGAGCCCCGGGTCGTTAAGCACTTTCGTCTTGACATCCTGTTTGATAGT
GGCAATGGTATCCTTGTAGGCAAAGTATTCGTGTTCTACACGAAGGAAGTTGGTGATGCTCTTGT
TTTGTTCCTTGGCGGCTTCCTTGGCGGCCTTGCGTTCGGCCTTCTTCTCCGCGGCCTCGCGTTCG
GCCTTTGCCTTTGCTTCGGCCGCTGCCTTGGCCTCTGCCTTGGCC
Right flanking sequence: Indices 215372 -- 215871
CTCTTTCTTTCGTGCCTCCTCTCGCTCTCGAGCTCGTCTCTCCTGCTCGAGTCGGCGTTGGCGCT
CGTCTTCTAGCCGCTGCGCTTCGTTCTGGAGCACGGACTTGGTCATAGCCTCCATGCGCTGTAGC
CGAGCTGTCGCCTGCGCCGTGAGCGTGTCGATTTGTGTTTTGGAGATGTCGTCAATTACCTCAGC
CAACTGTTTTGAGATGTCAACTCGCGAGGTTTCCTGAGAGCCTTTGGTTTCGTTCAATTGTCGTA
GCTTCTCGTGAAATGTGGCGAGCGACGTTGGAGTCATCACATTCAAGTGGACTTGCATCTGCTGG
GAGAGGTCGTGGACCACTGCCTCCGACGGGACGGGACCGAGGATAACCATGCTCGACTCTGTGGT
GGGTGTTCGTGGGACTAGCCCGTCGTTTTGTCGGGTGTTTTTGGTGCGTTCAATCGAGAGTTTGG
CCGTGGCAGGTGCCGTCGCCACCCCACCTTGGGGCCCTGGAAGCC
Found at i:216082 original size:8 final size:8
Alignment explanation
Indices: 216044--216079 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
216034 GTATCTGTTA
216044 TTGAGTTG
1 TTGAGTTG
216052 TTGAGTTG
1 TTGAGTTG
*
216060 TTGTGTTG
1 TTGAGTTG
*
216068 TTGACTTG
1 TTGAGTTG
216076 TTGA
1 TTGA
216080 CTTAGTTATC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.11, C:0.03, G:0.33, T:0.53
Consensus pattern (8 bp):
TTGAGTTG
Left flanking sequence: Indices 215544 -- 216043
GAGATGTCGTCAATTACCTCAGCCAACTGTTTTGAGATGTCAACTCGCGAGGTTTCCTGAGAGCC
TTTGGTTTCGTTCAATTGTCGTAGCTTCTCGTGAAATGTGGCGAGCGACGTTGGAGTCATCACAT
TCAAGTGGACTTGCATCTGCTGGGAGAGGTCGTGGACCACTGCCTCCGACGGGACGGGACCGAGG
ATAACCATGCTCGACTCTGTGGTGGGTGTTCGTGGGACTAGCCCGTCGTTTTGTCGGGTGTTTTT
GGTGCGTTCAATCGAGAGTTTGGCCGTGGCAGGTGCCGTCGCCACCCCACCTTGGGGCCCTGGAA
GCCCGAATCTCATGTGGTTGAGGTGAGATCGTTGCGCACTAAATGTGGGATGCCAGAGATAAACA
CTGGGATGAGGGTGGGCGTAAGGGGTGTGCTACGGAGACAGAGTAATCTGGTAAACTGTATGATC
TGAATGAGTAAGGATAGTGCTTCTGTTTGGTTTTCGTATCTGTTA
Right flanking sequence: Indices 216080 -- 216579
CTTAGTTATCAAATATAAACAAAAAGACAGTCTCCGAAATCGGAAGTATATACACGAACTAAAGG
CTCTACAAAACTCCAAAACATCTCTCTCCCATTCTTCTCAACTCTCTTCGTTGCTACATGGTGTC
CGTCCCCCTTCCCTCTCGTCGTTGCTGCACCGATGCACTGCAGCCAAATTTTTCACTTTTTTGAG
GTGCAGCGGTTACTGGACCATACCATGCTGATTCGGACGTTTTCCACCTCGGCGGTCAGAGGCCG
CACGGGGTACTCGACGGTGCAGCCGGTTCACCATCTTGTCAAAATCAACAAGAACGCGTTGAAGC
CCAAGCTTGCGCAGTTGTTGAAGCCCGCGGACGACATCACCAGTGTCAAGTTCAAGCCCACCGAG
ATCGACCAGGACCGGGTGGCGGAGTACTACCGCAACACGTTGCAGCTGGACATCATGCTCCACTG
CTACCAGCATGGCGCCGAGCTGATCAAGGGTAACAAGCTCCGGTC
Found at i:219395 original size:24 final size:24
Alignment explanation
Indices: 219358--219420 Score: 85
Period size: 24 Copynumber: 2.7 Consensus size: 24
219348 GGCACGTTGG
219358 TTCCCCA--CGGACACCAGCCAAC
1 TTCCCCACCCGGACACCAGCCAAC
* * *
219380 TTCCCCTCCTGGACACCGGCCAAC
1 TTCCCCACCCGGACACCAGCCAAC
219404 TTCCCCACCCGGACACC
1 TTCCCCACCCGGACACC
219421 CATTGGTCAC
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
22 6 0.18
24 28 0.82
ACGTcount: A:0.21, C:0.52, G:0.14, T:0.13
Consensus pattern (24 bp):
TTCCCCACCCGGACACCAGCCAAC
Left flanking sequence: Indices 218858 -- 219357
TCATGGGCACCAACAAAAAGACGGTGGCCCAGAACATTGCCGAGATGGCGCTCGACGAGTTGCAG
CGCCAGGGCATCGCCGTGGACCTGGTGCTGGTTGACTACCTCAACGGCGACATTTTCAACGGCGG
CGCCAACAAGGTGGGCAATGTCACTGCCCTCGAAACCCCCAAGCCAAAGCCCACCAAGGGCGACG
ACGTGGAGACCCCCGTGACGACGCCGGTGGAAGACCAGATCCGCCACCGGCGCGACGTCGGGAGC
AGTTTGTACACGGACGAAGACAGCCTCCAGGCCAGTGCCTAGGAGCGAACCAGTTTGTTTTTTGG
GTATCGGGCGATTTTTGTAGGTAATCAATTATAGAAAGAGCTGTAGGCTACACGATTATTGGAGT
GGCACGGAGTGTAACACGTTGGTTCCCACCTCAAACCGGCCAATTATTGGAGTGGGGTACGTTGG
TTCCCACCCGGACACCAGCCAATTGGTCGGAGTGTGGCACGTTGG
Right flanking sequence: Indices 219421 -- 219920
CATTGGTCACGCACCATTACCACATCATCCCACCGAGCTTATTTTCGTTCTGGTGATGTGGCTGC
CGCGCAGTGGCAAATATGCACGCTATTTCCTACCACCCTAGCACCACGACACCATGCACTTGATC
CGGGGCCCGGCGTTCTACGAACCGCACTTCACGTTGCGGCTGCAGTTGCGCGGCTACTCCAACTT
CAACGTCACCGTCCAGTTGGACCAATCGGTGACCCCGACCCACCTCAGCCACGCATTGCACCACT
TGGTCGCGACCCACCCGAACCTAGCGCTTATCACGGGTGCAGAGGGCATGGTGTACCTCTTGGAC
GAGATCCGCTTCAACGACGTGGCGCTGTTTGTCCAGCGCGACTTCGACGAGGCGGCATTGGCCTC
GCTCAACGACATCCGCTTCGATGTGGGCCACTACACCCCGAAGGAAAAGCTGGACCGCCCGCGCC
CGTGGTGGACGGTGGTGGTGTCGCAGTCGCCCACCGCCAGCACCC
Found at i:220984 original size:14 final size:14
Alignment explanation
Indices: 220967--221016 Score: 66
Period size: 14 Copynumber: 3.6 Consensus size: 14
220957 CTCAACGTTA
220967 AAGTCTTAATGTCT
1 AAGTCTTAATGTCT
*
220981 AAGTCTT-ATCGTCC
1 AAGTCTTAAT-GTCT
220995 AAGTCTTAATGTCT
1 AAGTCTTAATGTCT
*
221009 TAGTCTTA
1 AAGTCTTA
221017 TCGTCCAAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
13 2 0.06
14 27 0.87
15 2 0.06
ACGTcount: A:0.26, C:0.18, G:0.14, T:0.42
Consensus pattern (14 bp):
AAGTCTTAATGTCT
Left flanking sequence: Indices 220467 -- 220966
GGTTCTACCCCGGGATCGCCGCGACGGCGCTCCGCTACAACTGCTGCATGGCGGCAATCGACGTG
TTGCTCGGGCCCGAGAGCCACCCCATGGCCACCCTCCACAACGACACCATCGCCATTGCCGACCA
GCTCAGCCTGTCGCTCCAGCTGCGGGTGTGCTTCCACTACGTGACGTTGTTCCGCCTCGTGCGCC
CGCTCCTGTTGTTCAAGGCCAAGGTGGGGTCGCACGACCGCGCGCTGCTTGAGGTGAGCAACCTC
GGGGTGCACGACGTGCTGAGCGGCAAGTTCCACGCCGACAACTTGTGGTTTTCGCAGGACATTGG
CTTCCTGTGCCACGTTGGCTTCAGTGTGGTGTCGCTGCCGCGGGGTGGCACCAACATCGTCATGT
CCTACTTGGACGAATTTGCACCCGTCATTGACGCCTACGCCGCGCGCATCGTCAGCTTGATGTGA
CCCTCTGTACATAGTCCCACGGGTAGCGGCGGCGTCTCAACGTTA
Right flanking sequence: Indices 221017 -- 221516
TCGTCCAAGTCTCAACGTTTAACTTAGAGTCTTAGTCTCAACGTTAAGTCTTTAAACGTTAAGTC
TTTCGACATTAAGTCTTTCAACGTCTTAACGTCTCAACACAACTCTAACGTCTTTCGTAACGTGT
AATGAATATGCCTATATATCAAAACCCTCCCGTCATGTCGCGGATTTTGTCGACTTCCTCCTGCA
ACGCCTTGAGGTCGTCCAAGATGTTGGACGTCAGGTCGGACGGCGCCACCCCTGGCCGCGGCGGG
TACTGCTGGTACGGCAGGTTGTGGTTGTACTGCTGCTGGTGCTGGTGCGCCTGCTGATGCGCCTG
CTGGTGTGCCTGCTGGTGTACCTGATGCTGCTGATACGGTGCCTGTTGCTGATACGCCTGCGGCT
GCTGCTGCTGCTGCTGGAACAGCACCTGTGGCGGCGGCGACGCCGTGGCCTGCGGCCAGTTGAGC
TGGGGCTGCCCGAGCTCGATCTTGGGAGGAAGTGCCGGCGCAGGA
Found at i:220999 original size:28 final size:28
Alignment explanation
Indices: 220967--221028 Score: 115
Period size: 28 Copynumber: 2.2 Consensus size: 28
220957 CTCAACGTTA
220967 AAGTCTTAATGTCTAAGTCTTATCGTCC
1 AAGTCTTAATGTCTAAGTCTTATCGTCC
*
220995 AAGTCTTAATGTCTTAGTCTTATCGTCC
1 AAGTCTTAATGTCTAAGTCTTATCGTCC
221023 AAGTCT
1 AAGTCT
221029 CAACGTTTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.40
Consensus pattern (28 bp):
AAGTCTTAATGTCTAAGTCTTATCGTCC
Left flanking sequence: Indices 220467 -- 220966
GGTTCTACCCCGGGATCGCCGCGACGGCGCTCCGCTACAACTGCTGCATGGCGGCAATCGACGTG
TTGCTCGGGCCCGAGAGCCACCCCATGGCCACCCTCCACAACGACACCATCGCCATTGCCGACCA
GCTCAGCCTGTCGCTCCAGCTGCGGGTGTGCTTCCACTACGTGACGTTGTTCCGCCTCGTGCGCC
CGCTCCTGTTGTTCAAGGCCAAGGTGGGGTCGCACGACCGCGCGCTGCTTGAGGTGAGCAACCTC
GGGGTGCACGACGTGCTGAGCGGCAAGTTCCACGCCGACAACTTGTGGTTTTCGCAGGACATTGG
CTTCCTGTGCCACGTTGGCTTCAGTGTGGTGTCGCTGCCGCGGGGTGGCACCAACATCGTCATGT
CCTACTTGGACGAATTTGCACCCGTCATTGACGCCTACGCCGCGCGCATCGTCAGCTTGATGTGA
CCCTCTGTACATAGTCCCACGGGTAGCGGCGGCGTCTCAACGTTA
Right flanking sequence: Indices 221029 -- 221528
CAACGTTTAACTTAGAGTCTTAGTCTCAACGTTAAGTCTTTAAACGTTAAGTCTTTCGACATTAA
GTCTTTCAACGTCTTAACGTCTCAACACAACTCTAACGTCTTTCGTAACGTGTAATGAATATGCC
TATATATCAAAACCCTCCCGTCATGTCGCGGATTTTGTCGACTTCCTCCTGCAACGCCTTGAGGT
CGTCCAAGATGTTGGACGTCAGGTCGGACGGCGCCACCCCTGGCCGCGGCGGGTACTGCTGGTAC
GGCAGGTTGTGGTTGTACTGCTGCTGGTGCTGGTGCGCCTGCTGATGCGCCTGCTGGTGTGCCTG
CTGGTGTACCTGATGCTGCTGATACGGTGCCTGTTGCTGATACGCCTGCGGCTGCTGCTGCTGCT
GCTGGAACAGCACCTGTGGCGGCGGCGACGCCGTGGCCTGCGGCCAGTTGAGCTGGGGCTGCCCG
AGCTCGATCTTGGGAGGAAGTGCCGGCGCAGGAGACGTTTCGGGA
Found at i:221027 original size:14 final size:14
Alignment explanation
Indices: 220967--221028 Score: 65
Period size: 14 Copynumber: 4.4 Consensus size: 14
220957 CTCAACGTTA
*
220967 AAGTCTTAATGTCT
1 AAGTCTTAATGTCC
220981 AAGTCTT-ATCGTCC
1 AAGTCTTAAT-GTCC
*
220995 AAGTCTTAATGTCT
1 AAGTCTTAATGTCC
*
221009 TAGTCTT-ATCGTCC
1 AAGTCTTAAT-GTCC
221023 AAGTCT
1 AAGTCT
221029 CAACGTTTAA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
13 4 0.10
14 34 0.85
15 2 0.05
ACGTcount: A:0.24, C:0.21, G:0.15, T:0.40
Consensus pattern (14 bp):
AAGTCTTAATGTCC
Left flanking sequence: Indices 220467 -- 220966
GGTTCTACCCCGGGATCGCCGCGACGGCGCTCCGCTACAACTGCTGCATGGCGGCAATCGACGTG
TTGCTCGGGCCCGAGAGCCACCCCATGGCCACCCTCCACAACGACACCATCGCCATTGCCGACCA
GCTCAGCCTGTCGCTCCAGCTGCGGGTGTGCTTCCACTACGTGACGTTGTTCCGCCTCGTGCGCC
CGCTCCTGTTGTTCAAGGCCAAGGTGGGGTCGCACGACCGCGCGCTGCTTGAGGTGAGCAACCTC
GGGGTGCACGACGTGCTGAGCGGCAAGTTCCACGCCGACAACTTGTGGTTTTCGCAGGACATTGG
CTTCCTGTGCCACGTTGGCTTCAGTGTGGTGTCGCTGCCGCGGGGTGGCACCAACATCGTCATGT
CCTACTTGGACGAATTTGCACCCGTCATTGACGCCTACGCCGCGCGCATCGTCAGCTTGATGTGA
CCCTCTGTACATAGTCCCACGGGTAGCGGCGGCGTCTCAACGTTA
Right flanking sequence: Indices 221029 -- 221528
CAACGTTTAACTTAGAGTCTTAGTCTCAACGTTAAGTCTTTAAACGTTAAGTCTTTCGACATTAA
GTCTTTCAACGTCTTAACGTCTCAACACAACTCTAACGTCTTTCGTAACGTGTAATGAATATGCC
TATATATCAAAACCCTCCCGTCATGTCGCGGATTTTGTCGACTTCCTCCTGCAACGCCTTGAGGT
CGTCCAAGATGTTGGACGTCAGGTCGGACGGCGCCACCCCTGGCCGCGGCGGGTACTGCTGGTAC
GGCAGGTTGTGGTTGTACTGCTGCTGGTGCTGGTGCGCCTGCTGATGCGCCTGCTGGTGTGCCTG
CTGGTGTACCTGATGCTGCTGATACGGTGCCTGTTGCTGATACGCCTGCGGCTGCTGCTGCTGCT
GCTGGAACAGCACCTGTGGCGGCGGCGACGCCGTGGCCTGCGGCCAGTTGAGCTGGGGCTGCCCG
AGCTCGATCTTGGGAGGAAGTGCCGGCGCAGGAGACGTTTCGGGA
Found at i:221076 original size:15 final size:15
Alignment explanation
Indices: 221054--221105 Score: 77
Period size: 15 Copynumber: 3.5 Consensus size: 15
221044 AGTCTTAGTC
221054 TCAACGTTAAGTCTT
1 TCAACGTTAAGTCTT
*
221069 TAAACGTTAAGTCTT
1 TCAACGTTAAGTCTT
* *
221084 TCGACATTAAGTCTT
1 TCAACGTTAAGTCTT
221099 TCAACGT
1 TCAACGT
221106 CTTAACGTCT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.38
Consensus pattern (15 bp):
TCAACGTTAAGTCTT
Left flanking sequence: Indices 220554 -- 221053
CCATGGCCACCCTCCACAACGACACCATCGCCATTGCCGACCAGCTCAGCCTGTCGCTCCAGCTG
CGGGTGTGCTTCCACTACGTGACGTTGTTCCGCCTCGTGCGCCCGCTCCTGTTGTTCAAGGCCAA
GGTGGGGTCGCACGACCGCGCGCTGCTTGAGGTGAGCAACCTCGGGGTGCACGACGTGCTGAGCG
GCAAGTTCCACGCCGACAACTTGTGGTTTTCGCAGGACATTGGCTTCCTGTGCCACGTTGGCTTC
AGTGTGGTGTCGCTGCCGCGGGGTGGCACCAACATCGTCATGTCCTACTTGGACGAATTTGCACC
CGTCATTGACGCCTACGCCGCGCGCATCGTCAGCTTGATGTGACCCTCTGTACATAGTCCCACGG
GTAGCGGCGGCGTCTCAACGTTAAAGTCTTAATGTCTAAGTCTTATCGTCCAAGTCTTAATGTCT
TAGTCTTATCGTCCAAGTCTCAACGTTTAACTTAGAGTCTTAGTC
Right flanking sequence: Indices 221106 -- 221605
CTTAACGTCTCAACACAACTCTAACGTCTTTCGTAACGTGTAATGAATATGCCTATATATCAAAA
CCCTCCCGTCATGTCGCGGATTTTGTCGACTTCCTCCTGCAACGCCTTGAGGTCGTCCAAGATGT
TGGACGTCAGGTCGGACGGCGCCACCCCTGGCCGCGGCGGGTACTGCTGGTACGGCAGGTTGTGG
TTGTACTGCTGCTGGTGCTGGTGCGCCTGCTGATGCGCCTGCTGGTGTGCCTGCTGGTGTACCTG
ATGCTGCTGATACGGTGCCTGTTGCTGATACGCCTGCGGCTGCTGCTGCTGCTGCTGGAACAGCA
CCTGTGGCGGCGGCGACGCCGTGGCCTGCGGCCAGTTGAGCTGGGGCTGCCCGAGCTCGATCTTG
GGAGGAAGTGCCGGCGCAGGAGACGTTTCGGGATGCGACACGTTGCGGCGCCGGGGCGGAGGCGG
TGGAGGGGTGCGGGACTGCTGCTGGCGCTGCGGGACCGCGAGCGG
Found at i:221360 original size:12 final size:12
Alignment explanation
Indices: 221316--221359 Score: 70
Period size: 12 Copynumber: 3.7 Consensus size: 12
221306 CTGCTGCTGG
221316 TGCTGGTGCGCC
1 TGCTGGTGCGCC
*
221328 TGCTGATGCGCC
1 TGCTGGTGCGCC
*
221340 TGCTGGTGTGCC
1 TGCTGGTGCGCC
221352 TGCTGGTG
1 TGCTGGTG
221360 TACCTGATGC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.02, C:0.27, G:0.41, T:0.30
Consensus pattern (12 bp):
TGCTGGTGCGCC
Left flanking sequence: Indices 220816 -- 221315
TGTGGTGTCGCTGCCGCGGGGTGGCACCAACATCGTCATGTCCTACTTGGACGAATTTGCACCCG
TCATTGACGCCTACGCCGCGCGCATCGTCAGCTTGATGTGACCCTCTGTACATAGTCCCACGGGT
AGCGGCGGCGTCTCAACGTTAAAGTCTTAATGTCTAAGTCTTATCGTCCAAGTCTTAATGTCTTA
GTCTTATCGTCCAAGTCTCAACGTTTAACTTAGAGTCTTAGTCTCAACGTTAAGTCTTTAAACGT
TAAGTCTTTCGACATTAAGTCTTTCAACGTCTTAACGTCTCAACACAACTCTAACGTCTTTCGTA
ACGTGTAATGAATATGCCTATATATCAAAACCCTCCCGTCATGTCGCGGATTTTGTCGACTTCCT
CCTGCAACGCCTTGAGGTCGTCCAAGATGTTGGACGTCAGGTCGGACGGCGCCACCCCTGGCCGC
GGCGGGTACTGCTGGTACGGCAGGTTGTGGTTGTACTGCTGCTGG
Right flanking sequence: Indices 221360 -- 221859
TACCTGATGCTGCTGATACGGTGCCTGTTGCTGATACGCCTGCGGCTGCTGCTGCTGCTGCTGGA
ACAGCACCTGTGGCGGCGGCGACGCCGTGGCCTGCGGCCAGTTGAGCTGGGGCTGCCCGAGCTCG
ATCTTGGGAGGAAGTGCCGGCGCAGGAGACGTTTCGGGATGCGACACGTTGCGGCGCCGGGGCGG
AGGCGGTGGAGGGGTGCGGGACTGCTGCTGGCGCTGCGGGACCGCGAGCGGCTGCGGCAGCGATG
CCGAGGGGAACATGGGGTTGGCGTGGGCCCGCTCGGTCTGGAGCGGCAGCGACATCAGCCGGCCA
CGCGGCACCGGCGGCGGTGGTGGTGGCAACGGCCGCTCGTACCCGTTGGGCTGCGCCGCCGGCGG
CCACGCGTTTGTTTGTTGGGCAAACGGCTGGAACTGCTGCCCGGGCTGCGGCGGCGGCGGCTGGG
GGTTGTCGGGCATGAACTGGCTCCAGTCCTCGTTCTGGATGCCCT
Found at i:221365 original size:24 final size:24
Alignment explanation
Indices: 221316--221365 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 24
221306 CTGCTGCTGG
*
221316 TGCTGGTGCGCCTGCTGATGCGCC
1 TGCTGGTGCGCCTGCTGATGCACC
* * *
221340 TGCTGGTGTGCCTGCTGGTGTACC
1 TGCTGGTGCGCCTGCTGATGCACC
221364 TG
1 TG
221366 ATGCTGCTGA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.04, C:0.28, G:0.38, T:0.30
Consensus pattern (24 bp):
TGCTGGTGCGCCTGCTGATGCACC
Left flanking sequence: Indices 220816 -- 221315
TGTGGTGTCGCTGCCGCGGGGTGGCACCAACATCGTCATGTCCTACTTGGACGAATTTGCACCCG
TCATTGACGCCTACGCCGCGCGCATCGTCAGCTTGATGTGACCCTCTGTACATAGTCCCACGGGT
AGCGGCGGCGTCTCAACGTTAAAGTCTTAATGTCTAAGTCTTATCGTCCAAGTCTTAATGTCTTA
GTCTTATCGTCCAAGTCTCAACGTTTAACTTAGAGTCTTAGTCTCAACGTTAAGTCTTTAAACGT
TAAGTCTTTCGACATTAAGTCTTTCAACGTCTTAACGTCTCAACACAACTCTAACGTCTTTCGTA
ACGTGTAATGAATATGCCTATATATCAAAACCCTCCCGTCATGTCGCGGATTTTGTCGACTTCCT
CCTGCAACGCCTTGAGGTCGTCCAAGATGTTGGACGTCAGGTCGGACGGCGCCACCCCTGGCCGC
GGCGGGTACTGCTGGTACGGCAGGTTGTGGTTGTACTGCTGCTGG
Right flanking sequence: Indices 221366 -- 221865
ATGCTGCTGATACGGTGCCTGTTGCTGATACGCCTGCGGCTGCTGCTGCTGCTGCTGGAACAGCA
CCTGTGGCGGCGGCGACGCCGTGGCCTGCGGCCAGTTGAGCTGGGGCTGCCCGAGCTCGATCTTG
GGAGGAAGTGCCGGCGCAGGAGACGTTTCGGGATGCGACACGTTGCGGCGCCGGGGCGGAGGCGG
TGGAGGGGTGCGGGACTGCTGCTGGCGCTGCGGGACCGCGAGCGGCTGCGGCAGCGATGCCGAGG
GGAACATGGGGTTGGCGTGGGCCCGCTCGGTCTGGAGCGGCAGCGACATCAGCCGGCCACGCGGC
ACCGGCGGCGGTGGTGGTGGCAACGGCCGCTCGTACCCGTTGGGCTGCGCCGCCGGCGGCCACGC
GTTTGTTTGTTGGGCAAACGGCTGGAACTGCTGCCCGGGCTGCGGCGGCGGCGGCTGGGGGTTGT
CGGGCATGAACTGGCTCCAGTCCTCGTTCTGGATGCCCTGGTGCT
Found at i:223261 original size:26 final size:26
Alignment explanation
Indices: 223232--223282 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
223222 ATGTGGGCAC
*
223232 GGTGCTACGGTGGCTGCGGGCGGTGT
1 GGTGCTACGGTGGCTACGGGCGGTGT
223258 GGTGCTACGGTGGCTACGGGCGGTG
1 GGTGCTACGGTGGCTACGGGCGGTG
223283 GTTTGCCCCC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.06, C:0.20, G:0.53, T:0.22
Consensus pattern (26 bp):
GGTGCTACGGTGGCTACGGGCGGTGT
Left flanking sequence: Indices 222732 -- 223231
TCGTGGATGGTGATGGTGGGCGCCGACGTGCGGAGCAAGATGTCCAGGTACCACCGCATGTACGT
CTTCAGCTCCGCCAACGTGAGGTCCTGTGCCGTGAGGCTCAACGGGCCCAGGTCGGCCTCGCGGG
CAAACTGGTCGGCCAGCGCCCGCCCGGGGGCGGCAGCCCCGTCAAACCCCGACGGCATCAAGTGG
CCGTGGCTCGGCCGGGTGTGCTGGGGCAATTCCTCCAGCAGATGGTACCGCTGCGGTGGAGGCGG
AGCGTTGGCGCGGGACGGGAGCCCCGCGGCCACCAGGTCCGCCAGCGCCGCCGGGGTGAACAGCA
CCTGGGGGGTGTGGGGCTTCTTGTGTAGACCCAACCAGTCGAAGGTGGTGTCGTTGTTCATCCAG
TCCGCTATCGATCGACACGTTACAGTGCAAACTATGTCCAACGGCAACGGCACGCGCCTCCTGCA
GGTTGACGAGGAGGCACTGGGGCTGCCATTGCGCCATGTGGGCAC
Right flanking sequence: Indices 223283 -- 223782
GTTTGCCCCCGGTGGTGGCCGCCCAGCCTGGTTGGCGGTGGTCTCGGTGGTTCCCACCACCTCGC
CAAGGTGCAGGAGTGCACGCATACGGTAGATCGACACGGCATAACACCCGCCGACGATGATGAAC
CTCAAGAAGAAGGGGCCCAAGCAGCGTGCCCGCAAGGTGCTGCTCAGCGACGACGAGGGGCCGGC
AGCGCCCGCGGCGGACTTTGAGGCGGAGATGAAGCGCAAGCGGCAGAAGGTGGCGGAGGCGGTGG
ACCAGCAGCCCGAGGTGGAGGCAGAAGAGGTGCAAGAGAAGGAGGAGGTGCGAGGGAAAGACGTA
CGAGAGAAGGAGCCCGAGGGAAGCCGGTACCTCGACGGGATCAAGGCCGCGCTGGAGCGGCGCAA
GGGCGAGCAGCGCAAGGTGGCGCAGGCGCGGCTCGCGTCCGAGGTGGACAACGGCGCGGTGGTGG
TCAACACCAGAGACCTTCCGAAGTCGCGGCTCCTGCGGTCGGCGA
Found at i:224286 original size:14 final size:14
Alignment explanation
Indices: 224267--224294 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
224257 ACACACCCCT
224267 GGGTCTCACCCACC
1 GGGTCTCACCCACC
224281 GGGTCTCACCCACC
1 GGGTCTCACCCACC
224295 ACTCCACACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.50, G:0.21, T:0.14
Consensus pattern (14 bp):
GGGTCTCACCCACC
Left flanking sequence: Indices 223767 -- 224266
CTCCTGCGGTCGGCGATCGAGGCGTACCGCCAGCGGTACTGGCTGCGCCACCTGAGCCGCGAGGA
GTTTATTGCGCTTGATATTTAGGGTTTGTATTATTAAAGGGTTTAGTTTTAGAAATTTTGGAGAA
TTTGGAGAATTGTGAAAAAAGTGTAGAATAAGTTGGATTTTGGATTGTAATCAAGATGGGAATGT
CAGTACTGAATCAATGCTATCTATTGAGAGAAGATTAGTTAAGAGTATAGCATTTGTTCAGTTAC
GTCAGACTGGAAGCTGCGAATCTATCAATTGATGCATCACCTGGGTGCAACCACTGTGGCAGCGC
TCGCTACCATTCTAATTGACAATCTGATTCCAACTCAAATGAGTGTATTATTCCCTTCTACTAGT
AGTGAATACACTCAAACTATCAACCCTCCACATCTACTCCACGCCATATTCTGCATTGAATGAGC
CGGTTCCAAACCCACACCACCCGTCACACACACACACACACCCCT
Right flanking sequence: Indices 224295 -- 224794
ACTCCACACCCCACACCACACCCCATCTCTCTAATTCACCTAGAAACCCCCCACACCCTCCTAAT
TACACCGCTCCACTCCACTCGTTATCAGTTCGCGGGCACGCAACCACGCATATGCGGGGCCGGAA
GCTGCGGCAAGTTGCTCCAATCATACGACCACCCCCAGGGCCCCGACAATGTATATCATCCGCGA
CGTCAGAGTGATCGAGTGGGACTGCCGCTACATCCAGCAGGACCACTTGAAACTCGCCCTCCAGG
GCACCAAGTGCGACACCTCCGACGCAGTGCACCAGAACCGCACCTCCCACAACCGCCGGATCTGG
ATCGAGTTGGAACGGGGCCAGAACATCACCGTGCACCACGGCTGGCTCAACGACCAGCCGCTGTG
GTTCGACGACTTCGAGCCGTTCGACTCGTTCAAAATCCAGTGCCGCTTGCAGCCGGTGCGCAAGT
TGAGCGAGCCCAACGGGCAGTTCCCCGAGGTGTTTGGCGTCACCC
Found at i:224845 original size:19 final size:19
Alignment explanation
Indices: 224821--224904 Score: 107
Period size: 19 Copynumber: 4.5 Consensus size: 19
224811 CTTTTCATAG
* **
224821 AATACACACGGCGTATCGC
1 AATACACACAGCACATCGC
*
224840 AATACACACAGCACAGCGC
1 AATACACACAGCACATCGC
**
224859 AATACACAC-GCGTATCGC
1 AATACACACAGCACATCGC
224877 AATACACACAGCACATCGC
1 AATACACACAGCACATCGC
224896 AATACACAC
1 AATACACAC
224905 GCCTAGGGAT
Statistics
Matches: 55, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
18 15 0.27
19 40 0.73
ACGTcount: A:0.39, C:0.35, G:0.14, T:0.12
Consensus pattern (19 bp):
AATACACACAGCACATCGC
Left flanking sequence: Indices 224321 -- 224820
CTCTCTAATTCACCTAGAAACCCCCCACACCCTCCTAATTACACCGCTCCACTCCACTCGTTATC
AGTTCGCGGGCACGCAACCACGCATATGCGGGGCCGGAAGCTGCGGCAAGTTGCTCCAATCATAC
GACCACCCCCAGGGCCCCGACAATGTATATCATCCGCGACGTCAGAGTGATCGAGTGGGACTGCC
GCTACATCCAGCAGGACCACTTGAAACTCGCCCTCCAGGGCACCAAGTGCGACACCTCCGACGCA
GTGCACCAGAACCGCACCTCCCACAACCGCCGGATCTGGATCGAGTTGGAACGGGGCCAGAACAT
CACCGTGCACCACGGCTGGCTCAACGACCAGCCGCTGTGGTTCGACGACTTCGAGCCGTTCGACT
CGTTCAAAATCCAGTGCCGCTTGCAGCCGGTGCGCAAGTTGAGCGAGCCCAACGGGCAGTTCCCC
GAGGTGTTTGGCGTCACCCACTACCACCAGGGCACCTTTTCATAG
Right flanking sequence: Indices 224905 -- 225404
GCCTAGGGATCAATACATTTTGGTATTAGCTAGTGTACACAGTTAGAAAGAAAGCAAGTCGACCT
CGCCCGAGTTGTTGTTCTGGTTCTGGGGAGGGTTGGTGGAGGTGGGCTGCGACGGCACCGCACTG
CCTCCGAAGAAGTCGTCGTCGACGGCCGCGGGGGTCGCCACCTGAGGCGAGGCGGGCGTCGACGA
CCGCTTGTGCGGCGCCAGCGACTTGGCAGTGGAAAACAACAGCGAGAACGCGTCGGCCTTGGGCG
CAGCCTTGGCCGGCCCCAGCGACGCCGTCAGCACGTGGTAGTTGGCCTGACTCTGCTGCTGCTGC
TGCTGGAGCGGCACCGGATGCGTGGGCTGCGGCTGCTGGAACTGTTGCCCGCCTGCCGGCTGCGA
CACGTACAAGTTGGCCAAGCTGTTGGAGAGGTTGCCGGTGCCCGTCGACGGCGCCGCCTGGAAGT
CGTCAAAGTCGTCGTCGTCGTCGTCGGCCGCGGGAGCCGCCGCGG
Found at i:224877 original size:37 final size:37
Alignment explanation
Indices: 224821--224906 Score: 154
Period size: 37 Copynumber: 2.3 Consensus size: 37
224811 CTTTTCATAG
224821 AATACACACGGCGTATCGCAATACACACAGCACAGCGC
1 AATACACAC-GCGTATCGCAATACACACAGCACAGCGC
*
224859 AATACACACGCGTATCGCAATACACACAGCACATCGC
1 AATACACACGCGTATCGCAATACACACAGCACAGCGC
224896 AATACACACGC
1 AATACACACGC
224907 CTAGGGATCA
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
37 38 0.81
38 9 0.19
ACGTcount: A:0.38, C:0.35, G:0.15, T:0.12
Consensus pattern (37 bp):
AATACACACGCGTATCGCAATACACACAGCACAGCGC
Left flanking sequence: Indices 224321 -- 224820
CTCTCTAATTCACCTAGAAACCCCCCACACCCTCCTAATTACACCGCTCCACTCCACTCGTTATC
AGTTCGCGGGCACGCAACCACGCATATGCGGGGCCGGAAGCTGCGGCAAGTTGCTCCAATCATAC
GACCACCCCCAGGGCCCCGACAATGTATATCATCCGCGACGTCAGAGTGATCGAGTGGGACTGCC
GCTACATCCAGCAGGACCACTTGAAACTCGCCCTCCAGGGCACCAAGTGCGACACCTCCGACGCA
GTGCACCAGAACCGCACCTCCCACAACCGCCGGATCTGGATCGAGTTGGAACGGGGCCAGAACAT
CACCGTGCACCACGGCTGGCTCAACGACCAGCCGCTGTGGTTCGACGACTTCGAGCCGTTCGACT
CGTTCAAAATCCAGTGCCGCTTGCAGCCGGTGCGCAAGTTGAGCGAGCCCAACGGGCAGTTCCCC
GAGGTGTTTGGCGTCACCCACTACCACCAGGGCACCTTTTCATAG
Right flanking sequence: Indices 224907 -- 225406
CTAGGGATCAATACATTTTGGTATTAGCTAGTGTACACAGTTAGAAAGAAAGCAAGTCGACCTCG
CCCGAGTTGTTGTTCTGGTTCTGGGGAGGGTTGGTGGAGGTGGGCTGCGACGGCACCGCACTGCC
TCCGAAGAAGTCGTCGTCGACGGCCGCGGGGGTCGCCACCTGAGGCGAGGCGGGCGTCGACGACC
GCTTGTGCGGCGCCAGCGACTTGGCAGTGGAAAACAACAGCGAGAACGCGTCGGCCTTGGGCGCA
GCCTTGGCCGGCCCCAGCGACGCCGTCAGCACGTGGTAGTTGGCCTGACTCTGCTGCTGCTGCTG
CTGGAGCGGCACCGGATGCGTGGGCTGCGGCTGCTGGAACTGTTGCCCGCCTGCCGGCTGCGACA
CGTACAAGTTGGCCAAGCTGTTGGAGAGGTTGCCGGTGCCCGTCGACGGCGCCGCCTGGAAGTCG
TCAAAGTCGTCGTCGTCGTCGTCGGCCGCGGGAGCCGCCGCGGCA
Found at i:302996 original size:27 final size:27
Alignment explanation
Indices: 302958--303009 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
302948 AGGAATCCCT
* *
302958 GTCTGAGTCTTCGTCCTCTTCGTCTTC
1 GTCTGACTCTTCGTCCTCCTCGTCTTC
*
302985 GTCTGACTCTTCGTCTTCCTCGTCT
1 GTCTGACTCTTCGTCCTCCTCGTCT
303010 GACTCCGACT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.04, C:0.35, G:0.17, T:0.44
Consensus pattern (27 bp):
GTCTGACTCTTCGTCCTCCTCGTCTTC
Left flanking sequence: Indices 302458 -- 302957
TGTCGATACCAATGGTTTGAATTGAATTTTGAGCCCTGTGCTTACCATTTAGCGCTCCAAGATGA
ATAGTGGTTCGAGCCCAAGTGAGGGTGAACAATTTACGCTATGTGGAAAGATACAATACGTACTA
CCCTCGTTGATCGAGAATAGTCGCGTTTGCTTTGTGTCGATGATAAGCTGGCATGCCTGAATTTT
GAGGATTATCCTCATGTTTTTGGTACGTGCTCTGGTGCGGTAACGGCTTCGCTGTAGTAACCTAT
GCCGCCTGTGTTAGTCTCTTCCATCGTTCCCGTCGTCGTGTGATTAGAGTTGTGTAGCTGGACGC
GATGAGATACCTGCACACTGGATTTTTTGCCCCGTTCTGCGCATCCCTGCGATGCCATCTGTAGC
GAAATTGCGGTTAAACAATTTTTCAACTACTTTATCATTATCATGGCTAAAGTTTCTAAGACCAC
TAAGGTGGACAAGAAGTCCAAGGTTTCCAAGAAGCAGGAATCCCT
Right flanking sequence: Indices 303010 -- 303509
GACTCCGACTCGTCTGACTCGCTGTCTGAATCTGAGGCTGAGGAGAAGAAGACTACCAAGGACGC
TTCCCTGAGCTCTTCGGACTCTTCTTCTGACTCGTCGTCCGATTCTTCGTCTGACTCTGACTCCG
ATTCTGACCTGTCGGATGATGAGGAGGAGAAGAAGGAGGACAAGAAGGAGACGAAGAAGGAGGAG
TCTTCTACTTCGTCCGACTCCGACTCCGACTCTTCGTCTCTGTCTTCGGACTCTGACGCCGATGA
CGAGTCCAGCGATGATGAGGGTGAGAAGAAGGAGAAGAAGTCTTCGTCTTCTTCTTCGTCTTCTT
CTTCGTCTTCGTCTTCGTCTTCTTCGTCTTCGTCTTCGTCTTCGTCCGACTCCTCTTCTGACTCT
TCGTCCGACTCCGACTCCGACTCTGAGGAGGCTGAGGAGGAGGACTCTAAGAAGAGAAAGGCTGA
CTCCGAGGAGGCCGAGGAGGCCCCCATCAAGAAGGCCAAGGTTGA
Found at i:303121 original size:24 final size:24
Alignment explanation
Indices: 303094--303144 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
303084 CTCTTCGGAC
* *
303094 TCTTCTTCTGACTC-GTCGTCCGAT
1 TCTTCGTCTGACTCTGAC-TCCGAT
303118 TCTTCGTCTGACTCTGACTCCGAT
1 TCTTCGTCTGACTCTGACTCCGAT
303142 TCT
1 TCT
303145 GACCTGTCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 22 0.92
25 2 0.08
ACGTcount: A:0.10, C:0.33, G:0.16, T:0.41
Consensus pattern (24 bp):
TCTTCGTCTGACTCTGACTCCGAT
Left flanking sequence: Indices 302594 -- 303093
TTGATCGAGAATAGTCGCGTTTGCTTTGTGTCGATGATAAGCTGGCATGCCTGAATTTTGAGGAT
TATCCTCATGTTTTTGGTACGTGCTCTGGTGCGGTAACGGCTTCGCTGTAGTAACCTATGCCGCC
TGTGTTAGTCTCTTCCATCGTTCCCGTCGTCGTGTGATTAGAGTTGTGTAGCTGGACGCGATGAG
ATACCTGCACACTGGATTTTTTGCCCCGTTCTGCGCATCCCTGCGATGCCATCTGTAGCGAAATT
GCGGTTAAACAATTTTTCAACTACTTTATCATTATCATGGCTAAAGTTTCTAAGACCACTAAGGT
GGACAAGAAGTCCAAGGTTTCCAAGAAGCAGGAATCCCTGTCTGAGTCTTCGTCCTCTTCGTCTT
CGTCTGACTCTTCGTCTTCCTCGTCTGACTCCGACTCGTCTGACTCGCTGTCTGAATCTGAGGCT
GAGGAGAAGAAGACTACCAAGGACGCTTCCCTGAGCTCTTCGGAC
Right flanking sequence: Indices 303145 -- 303644
GACCTGTCGGATGATGAGGAGGAGAAGAAGGAGGACAAGAAGGAGACGAAGAAGGAGGAGTCTTC
TACTTCGTCCGACTCCGACTCCGACTCTTCGTCTCTGTCTTCGGACTCTGACGCCGATGACGAGT
CCAGCGATGATGAGGGTGAGAAGAAGGAGAAGAAGTCTTCGTCTTCTTCTTCGTCTTCTTCTTCG
TCTTCGTCTTCGTCTTCTTCGTCTTCGTCTTCGTCTTCGTCCGACTCCTCTTCTGACTCTTCGTC
CGACTCCGACTCCGACTCTGAGGAGGCTGAGGAGGAGGACTCTAAGAAGAGAAAGGCTGACTCCG
AGGAGGCCGAGGAGGCCCCCATCAAGAAGGCCAAGGTTGAGGACTCTGAGCCCGCTACCTTGTTT
GTTGGCAGATTGTCGTGGAACATTGACGACGAGTGGTTGAAGCGCGAGTTTGAGCCCCTCGGTGG
TGTCACCGGTGCCCGTGTCATGTGGGAGCGTGACTCTGGTAAGTC
Found at i:303178 original size:12 final size:12
Alignment explanation
Indices: 303161--303204 Score: 63
Period size: 12 Copynumber: 3.7 Consensus size: 12
303151 TCGGATGATG
303161 AGGAGGAGAAGA
1 AGGAGGAGAAGA
*
303173 AGGAGGACAAGA
1 AGGAGGAGAAGA
303185 AGGA-GACGAAGA
1 AGGAGGA-GAAGA
303197 AGGAGGAG
1 AGGAGGAG
303205 TCTTCTACTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 2 0.07
12 24 0.86
13 2 0.07
ACGTcount: A:0.48, C:0.05, G:0.48, T:0.00
Consensus pattern (12 bp):
AGGAGGAGAAGA
Left flanking sequence: Indices 302661 -- 303160
TCCTCATGTTTTTGGTACGTGCTCTGGTGCGGTAACGGCTTCGCTGTAGTAACCTATGCCGCCTG
TGTTAGTCTCTTCCATCGTTCCCGTCGTCGTGTGATTAGAGTTGTGTAGCTGGACGCGATGAGAT
ACCTGCACACTGGATTTTTTGCCCCGTTCTGCGCATCCCTGCGATGCCATCTGTAGCGAAATTGC
GGTTAAACAATTTTTCAACTACTTTATCATTATCATGGCTAAAGTTTCTAAGACCACTAAGGTGG
ACAAGAAGTCCAAGGTTTCCAAGAAGCAGGAATCCCTGTCTGAGTCTTCGTCCTCTTCGTCTTCG
TCTGACTCTTCGTCTTCCTCGTCTGACTCCGACTCGTCTGACTCGCTGTCTGAATCTGAGGCTGA
GGAGAAGAAGACTACCAAGGACGCTTCCCTGAGCTCTTCGGACTCTTCTTCTGACTCGTCGTCCG
ATTCTTCGTCTGACTCTGACTCCGATTCTGACCTGTCGGATGATG
Right flanking sequence: Indices 303205 -- 303704
TCTTCTACTTCGTCCGACTCCGACTCCGACTCTTCGTCTCTGTCTTCGGACTCTGACGCCGATGA
CGAGTCCAGCGATGATGAGGGTGAGAAGAAGGAGAAGAAGTCTTCGTCTTCTTCTTCGTCTTCTT
CTTCGTCTTCGTCTTCGTCTTCTTCGTCTTCGTCTTCGTCTTCGTCCGACTCCTCTTCTGACTCT
TCGTCCGACTCCGACTCCGACTCTGAGGAGGCTGAGGAGGAGGACTCTAAGAAGAGAAAGGCTGA
CTCCGAGGAGGCCGAGGAGGCCCCCATCAAGAAGGCCAAGGTTGAGGACTCTGAGCCCGCTACCT
TGTTTGTTGGCAGATTGTCGTGGAACATTGACGACGAGTGGTTGAAGCGCGAGTTTGAGCCCCTC
GGTGGTGTCACCGGTGCCCGTGTCATGTGGGAGCGTGACTCTGGTAAGTCCAGAGGTTACGGTTA
CGTTGACTTCGAGACTAAGGACCAGGCTGAGAACGCTCTCCGTGA
Found at i:303318 original size:6 final size:6
Alignment explanation
Indices: 303309--303380 Score: 105
Period size: 6 Copynumber: 12.5 Consensus size: 6
303299 AGGAGAAGAA
* *
303309 GTCTTC GTCTTC TTCTTC GTCTTC TTCTTC GTCTTC GTCTTC GTC-T-
1 GTCTTC GTCTTC GTCTTC GTCTTC GTCTTC GTCTTC GTCTTC GTCTTC
303355 -TCTTC GTCTTC GTCTTC GTCTTC GTC
1 GTCTTC GTCTTC GTCTTC GTCTTC GTC
303381 CGACTCCTCT
Statistics
Matches: 59, Mismatches: 4, Indels: 6
0.86 0.06 0.09
Matches are distributed among these distances:
3 2 0.03
4 1 0.02
5 1 0.02
6 55 0.93
ACGTcount: A:0.00, C:0.33, G:0.14, T:0.53
Consensus pattern (6 bp):
GTCTTC
Left flanking sequence: Indices 302809 -- 303308
TTGCCCCGTTCTGCGCATCCCTGCGATGCCATCTGTAGCGAAATTGCGGTTAAACAATTTTTCAA
CTACTTTATCATTATCATGGCTAAAGTTTCTAAGACCACTAAGGTGGACAAGAAGTCCAAGGTTT
CCAAGAAGCAGGAATCCCTGTCTGAGTCTTCGTCCTCTTCGTCTTCGTCTGACTCTTCGTCTTCC
TCGTCTGACTCCGACTCGTCTGACTCGCTGTCTGAATCTGAGGCTGAGGAGAAGAAGACTACCAA
GGACGCTTCCCTGAGCTCTTCGGACTCTTCTTCTGACTCGTCGTCCGATTCTTCGTCTGACTCTG
ACTCCGATTCTGACCTGTCGGATGATGAGGAGGAGAAGAAGGAGGACAAGAAGGAGACGAAGAAG
GAGGAGTCTTCTACTTCGTCCGACTCCGACTCCGACTCTTCGTCTCTGTCTTCGGACTCTGACGC
CGATGACGAGTCCAGCGATGATGAGGGTGAGAAGAAGGAGAAGAA
Right flanking sequence: Indices 303381 -- 303880
CGACTCCTCTTCTGACTCTTCGTCCGACTCCGACTCCGACTCTGAGGAGGCTGAGGAGGAGGACT
CTAAGAAGAGAAAGGCTGACTCCGAGGAGGCCGAGGAGGCCCCCATCAAGAAGGCCAAGGTTGAG
GACTCTGAGCCCGCTACCTTGTTTGTTGGCAGATTGTCGTGGAACATTGACGACGAGTGGTTGAA
GCGCGAGTTTGAGCCCCTCGGTGGTGTCACCGGTGCCCGTGTCATGTGGGAGCGTGACTCTGGTA
AGTCCAGAGGTTACGGTTACGTTGACTTCGAGACTAAGGACCAGGCTGAGAACGCTCTCCGTGAG
TACCAGGGCCGTGAGATTGACGGTCGTCCCATCAACTTGGACATGTCCACTGGTAAGCCCCGCCA
GTCTACTCCCCAGACTCGTGCCCGTGAGTTCGGTGACTCCCAGTCGCCTCCTTCTGACACTTTGT
TCATCGGTAACTTGTCTTTCAACGCTGACCGTGATGAGTTGTTCA
Done.