Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold45
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 627231
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
Warning! 1 characters in sequence are not A, C, G, or T
File 1 of 3
Found at i:3709 original size:18 final size:19
Alignment explanation
Indices: 3675--3742 Score: 93
Period size: 19 Copynumber: 3.6 Consensus size: 19
3665 GAAACTCATG
3675 GTGGGTGGTGGTTAGCGGT
1 GTGGGTGGTGGTTAGCGGT
* *
3694 ATGGGTGGT-ATTAGCGGT
1 GTGGGTGGTGGTTAGCGGT
*
3712 GTGGTTGGTGGTTAGCGGT
1 GTGGGTGGTGGTTAGCGGT
3731 GTGGGTGTGTGG
1 GTGGGTG-GTGG
3743 GTTGTGGGAT
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
18 15 0.37
19 22 0.54
20 4 0.10
ACGTcount: A:0.07, C:0.04, G:0.54, T:0.34
Consensus pattern (19 bp):
GTGGGTGGTGGTTAGCGGT
Left flanking sequence: Indices 3175 -- 3674
ACCTGGGCGGCTCGGGCGCGCTGTCTCGGCGGCTGTCGCTGCTCTTGCGGCTGCTCGCCTCATCT
GCGAGGGTGGCCAGCGATGCCAGAAAGTCGTCGCTCTTCCTCGAGAAGATCTTTTTGAGCCTCAG
CTTCAGTTTCTTGCGCAGCGAGGTGCTGCCCACGTCACTGGACTCGTCGACGCCGCTGAGCATCA
GCCGCACTTCGCTACGGACGTCCAGGGCCATCAGGTTGGCCCGTCCACGCTCGTGTGACGCTGCC
AGCAGCATCGAGCCCACCAGCTGGGGCACGGTGGCGTCGGACCGCGACGAGCGGTCGGAGCGGAT
CAGGTCGTGGGACTCGGCCAGAAAGGTGCTGGGGGCTATCAGTGCTGCCAGCAGGCCCAGGCCCA
GGCCCAGCCACAGCGACTTCTTTTTCTTGTGGGCCTTTTTCTTTTCCTCCTGTGCCTGGAGCTTC
TTTTTGGTTTGGTAGCTCACGGGGGGCACGATCATGAAACTCATG
Right flanking sequence: Indices 3743 -- 4242
GTTGTGGGATTGGGTAGGCACGGGTTAATCCGAGTGGTTGGGTGGTGCGGTGGATTGGTGCACTG
GTCGTAGGTTGTTCAACTAGTGGTGTGGGTTTGCGGATTCAGTGGAGTCCAGTGGATAGCGATCT
CCAGTGTCTCGTTTGTGTAGCACGGTTGAGCAACCAGTACCCTCGGCTATCAAGAATCGGTACCG
ACGGTCGCGTCTGTTATCTCCGGGTTGCTGCTCACGGTGGGTACGCAACAATCAATGGGGGGAGG
CACAGCACAGCAGGGAACAAACAGCGTCCAGGTGTCGGGCGAAGTGTCGTCTGGTCTCGTGTCTA
GTCACAAACCCCGGTAGAGCCACGTCTAATTGCTTGTCAAAACGAGGCTTTCAAGGCGCAGGGGC
AAACAGAGGGGCGGGGACTGCGTTGGGGAAGTGGAGCCGGTCAGCACAAACAACACAGAACTCAA
ATACCGGTAGGGGTCACGAATGGTGTTACAGCTACTTAAACCGAA
Found at i:4985 original size:12 final size:12
Alignment explanation
Indices: 4970--4994 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
4960 AGACCTGGTG
4970 GTATCTTTGGGC
1 GTATCTTTGGGC
4982 GTATCTTTGGGC
1 GTATCTTTGGGC
4994 G
1 G
4995 AAACCTGGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.36, T:0.40
Consensus pattern (12 bp):
GTATCTTTGGGC
Left flanking sequence: Indices 4470 -- 4969
GTCCGACATTTGTCTGGCAGGTTCCCACCAACACCCCTAATGCGCCAAGACGCGGGTCGATCAAC
CACGATGAGGTTTGCCACTGACGCACGTGGTGTGACGGTGCCAAGCCTGGTGGGTCGTCAGCTGA
TGCTACAAATTTCTCTCGCTCAAAGCAACCCCAGTTCGCTGGCCCTATGTCCGCGGCCTACAGTA
TGTCCGCGTAAAATAAGGTTTCGGGCGTGGACAGACATGTTCCAGAAGCCTGAGATACGACCACG
GATCCGACACGATCGATAGCCGCCGCGAGCTGGCGATCGATGGGGGCGCTTCTAGCGGGTCTAAA
GTGGTTAGTTAGGGTGTGAGGTTAGTGTGGCCTCATTTGCACGTGAGGCATCCGACCACCGCAGA
GGTACATGACTACGCGATAGCCGAGCCGACGCGGCTAATTAAGGGTGTGCTGACACCTGTCACCG
GGGCGAGCGGGTGCGCAGTGTGGGGTCCTGTCAGAAGACCTGGTG
Right flanking sequence: Indices 4995 -- 5494
AAACCTGGTGGGTTTCAGCGTGTTTCCGGAGATCCGGGTTGACCTTCCTTTTGTGCCTCGGTGCT
GCAGGTATCCCCGCAACAATGGCCACCGGCGACGGGAGAAGCAAGCGAAAATGAGGACAATGCCC
GCAGCAGACAGACGTACGATACGATATGGCGATGAGTCTCAGCCTCGATGGTTGGAAGGTGTGGT
CTGAGGAGAGAGGTGGAAGAATAGTTTACGCAGGTCTTACTGTTCGAGGCTGTAACCAAGGCTGT
AATTGACGCTGTTATCAAGGCTGTATCGAGGCTGTAATCGAGGCTAATCGATCCTCGGTTTGTAG
TAACTTCCAGAGCCTTACGGCAGCTCGACCCGGGTTGATCTTGATTTTAATTCGTGCCTGAGTGG
GTGGGTATTCGATGCATACAATAACGGCCTGTCACTTGTACAATAGCCTCTCAAAAATCAAGTTT
TCAGCGTAAATTCTATCAGACCTACGCTGAGCCAATGGTTCATAC
Found at i:5277 original size:12 final size:12
Alignment explanation
Indices: 5233--5299 Score: 55
Period size: 12 Copynumber: 5.7 Consensus size: 12
5223 GTCTTACTGT
*
5233 TCGAGGCTGTAA
1 TCGAGGCTGTTA
* * *
5245 CCAAGGCTGTAA
1 TCGAGGCTGTTA
* *
5257 TTGACGCTGTTA
1 TCGAGGCTGTTA
*
5269 TCAAGGCTG-TA
1 TCGAGGCTGTTA
*
5280 TCGAGGCTGTAA
1 TCGAGGCTGTTA
5292 TCGAGGCT
1 TCGAGGCT
5300 AATCGATCCT
Statistics
Matches: 42, Mismatches: 12, Indels: 2
0.75 0.21 0.04
Matches are distributed among these distances:
11 10 0.24
12 32 0.76
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (12 bp):
TCGAGGCTGTTA
Left flanking sequence: Indices 4733 -- 5232
CCGACACGATCGATAGCCGCCGCGAGCTGGCGATCGATGGGGGCGCTTCTAGCGGGTCTAAAGTG
GTTAGTTAGGGTGTGAGGTTAGTGTGGCCTCATTTGCACGTGAGGCATCCGACCACCGCAGAGGT
ACATGACTACGCGATAGCCGAGCCGACGCGGCTAATTAAGGGTGTGCTGACACCTGTCACCGGGG
CGAGCGGGTGCGCAGTGTGGGGTCCTGTCAGAAGACCTGGTGGTATCTTTGGGCGTATCTTTGGG
CGAAACCTGGTGGGTTTCAGCGTGTTTCCGGAGATCCGGGTTGACCTTCCTTTTGTGCCTCGGTG
CTGCAGGTATCCCCGCAACAATGGCCACCGGCGACGGGAGAAGCAAGCGAAAATGAGGACAATGC
CCGCAGCAGACAGACGTACGATACGATATGGCGATGAGTCTCAGCCTCGATGGTTGGAAGGTGTG
GTCTGAGGAGAGAGGTGGAAGAATAGTTTACGCAGGTCTTACTGT
Right flanking sequence: Indices 5300 -- 5799
AATCGATCCTCGGTTTGTAGTAACTTCCAGAGCCTTACGGCAGCTCGACCCGGGTTGATCTTGAT
TTTAATTCGTGCCTGAGTGGGTGGGTATTCGATGCATACAATAACGGCCTGTCACTTGTACAATA
GCCTCTCAAAAATCAAGTTTTCAGCGTAAATTCTATCAGACCTACGCTGAGCCAATGGTTCATAC
CCTGATTCTATTCATTATTCATTACATAGTTAGATCGGAGGCAATGCCTGGCGACACACGGGACA
CTGAAGCTTGTACTTCATCCACGACTCAAGACACTCGGCGTGGAAAATGTGGTGGCACGGAGTGA
TCATGTACTCCTTGCGCGACACCGCCAGCGCCTTCAGAGCCTCAGCGACAATGGGCAACGTCAAC
GTGGTCATACAGATGGGACACGTGCACACGCAGTTGGTAATGCCTGCCTTGGCGGGCTCGTCGGC
CCCGAGCTTGATCCCCTCCAACACCTCCAGCAGGAACCCGTTCTC
Found at i:8117 original size:11 final size:11
Alignment explanation
Indices: 8101--8132 Score: 55
Period size: 12 Copynumber: 2.8 Consensus size: 11
8091 AAGAGGGTGG
8101 GGGTTTGGGAT
1 GGGTTTGGGAT
8112 GGGTTTTGGGAT
1 GGG-TTTGGGAT
8124 GGGTTTGGG
1 GGGTTTGGG
8133 CCGTTTCGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 9 0.45
12 11 0.55
ACGTcount: A:0.06, C:0.00, G:0.56, T:0.38
Consensus pattern (11 bp):
GGGTTTGGGAT
Left flanking sequence: Indices 7601 -- 8100
TCCTTTTGGTTGTGCTGGAACGGGTGCTTTTCGGAGTACTTGTGGAGCGGCCACTGCGACGCGTT
GTGTCCGTCTAGGTGGTCCTGGTACGATAACTGGAACCCGGTTATGTTCCCGTATCCGGCCCACG
GGGGCGTGTTGACCAACTCCTGGTACAGCGTGCGGGTGTGGTTGTGGAAGAGGTCGAGTGCCCGC
TGCTCGCTGCTGTTGTGGGCCTGCTCGTTGTCCAGGGGAAACCACAAGAAGATCATGATGATCAA
GAGGAAGAAGAACGTCTGTCTATCCATGGTGGCCGGCGCCAATCGGCGAAATGCAAATGCTGGGG
GAGGGCGCTAGGGGATAGAAGGCGCTATAAGTGGGGAAAAGCGCTCGAGGGATACGCGGGTTGGG
ATGGGGGTTGGTGGCGACTGGATTGATCGGGTATGCGCATATGCACTCTTGCTGCAGTGGAATCC
CGGTGGCAAGAGCGGGAGAAGCTGGTGGGCGGAAGAAGAGGGTGG
Right flanking sequence: Indices 8133 -- 8632
CCGTTTCGGCGCGTGTGAGTGTTTCGGGTGGTTTGCAGAGGCTGTCTACGGTAGGTAATTGGTGA
AAATCGGTTCACCAATAGAACTCGGAAAGGTTTATAGCCACAGTTACGTTGGAAGGTAGTAGAGC
GGACGAGACAATACCAAGAATTCCACCAATTGCTAGGGTAGAGGCAACCCCCGAGAATACGGAGT
GGGCGTAGTCAGTCACACCCGGCACGTGACCAGTCATGTTGCAAGTAGCATCAAGCACCCCCAGA
CACTGGCGTGAGCAGTTTCAGTAGTCGGTATGTTGTAAGTGTCACACTGGCACGCGCCCTTGGGC
GATCCATGGACATCTTCGTCGATGCAGCCTAATTCCAGACACAAAGCCAACGTCAGCACACGAAA
CTAACAGCACACCCATCTCTACACCCCATCTTTTCACCCCATATCTACACCACATTTCTACACCC
CACCTACACCCCTACCTATTGCCTCTACCCCACCATCATTCACAT
Found at i:8552 original size:13 final size:13
Alignment explanation
Indices: 8534--8599 Score: 73
Period size: 13 Copynumber: 5.2 Consensus size: 13
8524 TAACAGCACA
8534 CCCATCTCTACAC
1 CCCATCTCTACAC
* *
8547 CCCATCTTTTCAC
1 CCCATCTCTACAC
*
8560 CCCATATCTACAC
1 CCCATCTCTACAC
* *
8573 CACATTTCTACAC
1 CCCATCTCTACAC
8586 CCCA-C-CTACAC
1 CCCATCTCTACAC
8597 CCC
1 CCC
8600 TACCTATTGC
Statistics
Matches: 44, Mismatches: 9, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
11 9 0.20
13 35 0.80
ACGTcount: A:0.24, C:0.52, G:0.00, T:0.24
Consensus pattern (13 bp):
CCCATCTCTACAC
Left flanking sequence: Indices 8034 -- 8533
CACTCTTGCTGCAGTGGAATCCCGGTGGCAAGAGCGGGAGAAGCTGGTGGGCGGAAGAAGAGGGT
GGGGGTTTGGGATGGGTTTTGGGATGGGTTTGGGCCGTTTCGGCGCGTGTGAGTGTTTCGGGTGG
TTTGCAGAGGCTGTCTACGGTAGGTAATTGGTGAAAATCGGTTCACCAATAGAACTCGGAAAGGT
TTATAGCCACAGTTACGTTGGAAGGTAGTAGAGCGGACGAGACAATACCAAGAATTCCACCAATT
GCTAGGGTAGAGGCAACCCCCGAGAATACGGAGTGGGCGTAGTCAGTCACACCCGGCACGTGACC
AGTCATGTTGCAAGTAGCATCAAGCACCCCCAGACACTGGCGTGAGCAGTTTCAGTAGTCGGTAT
GTTGTAAGTGTCACACTGGCACGCGCCCTTGGGCGATCCATGGACATCTTCGTCGATGCAGCCTA
ATTCCAGACACAAAGCCAACGTCAGCACACGAAACTAACAGCACA
Right flanking sequence: Indices 8600 -- 9099
TACCTATTGCCTCTACCCCACCATCATTCACATTCCCACACCCCTATTCCGACACTTTATGCCAT
TTTCGCCGACACCAGCCACAGACCGGTCACAAACCGCTCGACCAACCCAATTTGCCACACACACC
ACCACCACCTTCCAAACCACCCCTGCCGCCACACCCGGCCCCAGGCACCCTACCCCTCCCGCTCG
TGCCCCACCTGCTTATCTCTCCGTCCACCTGTCATCGCCGTGTGCAGGACACCTGCTCCGTCTTT
TTCTCGCGCTACGATGTCTCCCATCATCAACCGTTGGCCAACCACAGGCGCCCAGGAACTCTATT
CTATCCTCTACGCAGGCACCACTGGCCACCCATTCCGCCTCCTCTTGCTCCAGACACTTAGCTAG
CCGGATGGACAACTCTCCAGCCCCCGAGCCCCGGGTATCCACCCCTCCGGACAGCACGGGCACCC
CCGCGGACAGCCCAGACGGCGTCTCGGCCGCCACCCCGCTAGTTG
Found at i:10904 original size:9 final size:9
Alignment explanation
Indices: 10890--10930 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
10880 CCCCCAGGGC
10890 CCTCCGGGT
1 CCTCCGGGT
10899 CCTCCGGGT
1 CCTCCGGGT
*
10908 CCTCCAGGT
1 CCTCCGGGT
* *
10917 CCACCGGGC
1 CCTCCGGGT
10926 CCTCC
1 CCTCC
10931 CCAGCCTCCG
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.05, C:0.51, G:0.27, T:0.17
Consensus pattern (9 bp):
CCTCCGGGT
Left flanking sequence: Indices 10390 -- 10889
TGGCGGACACCGAGGACGTGACCCACCGGGCACTCTCCGATGCGGTGGCTGATGCCGCCTACCTG
GGGGTGCTTGGGTGCTGCATTATCAACGAGCACAACGTGGACTTGCAAACGTTTGAGGCTGACGC
TGACGGTGGAGTCAAGTTTGACGAGTACGCGGCCATCGACCCCGACGAGGCCGCCAACTTGCTCC
AGACGGCTCGCCAAAAGCGCGGTGGCTCGGTTGCGCCCGCTCTGCCCGAGCCCAAGCCCAGCCAG
GCGCCTTCTGGGCCTCCTCCAGGCCAGGCTTATGGTGGCTTCCAGCCCCAGCCTCCGCAGTTTGC
TCCCTACGGGCCGCCTCCGCCCGGGTTCCAGCCTCCCTACGGCGCTACTCCACCCCCTATGTCTC
CCTACGGGGCCACACCGCCTCCGATGGCTCCCTACGGCAACGGGACCCCGCCTCCCGTGCCGCCG
TACTCGGGTGGCCCGCCGCCTATGCCCATGGGCTACCCCCAGGGC
Right flanking sequence: Indices 10931 -- 11430
CCAGCCTCCGTACGGTGGCTACAACAACTACCCTCCCCAACAGTACCCTCCGTTTGAGCCTCTGC
CACCGCAGGGCCCGGGACCCCAGCCGTTTGTGCCTTCTCCACCCACGGGTGCTCCCTGGAGTGGC
AACCGGTACTCGGAGGCCCGCAACGACAACAAGGGCTACAACCGGTACCAGGACCGCGGCGACCG
CGATCGCGGGGAACGGGGTAACGGGCCCACGCCGTACAACGTGGGCATAGCTGGCCATCAGCCGC
CCAAGAGCCGTGGAGGCCACCGGCGTGGTGGGCGCAAGCACGCCAAATATGACAACTACCTGTCC
TACGGTGCTCCCGGGTCGCAGTCGCTCCTGGGATCGCTGAAGTACGAGCAGTACTCGAACCAGTA
CCAGCAGCAAGCCCAGCAGCCGCCGGCCCAAGAGTCTGCTGAGCTGGGTAGCTCAAACTCGGCCC
CTTCGGGCGACGCCAAACTGTTGATGGACTCCATCGCTAAGCTTG
Found at i:10917 original size:18 final size:18
Alignment explanation
Indices: 10886--10930 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
10876 GCTACCCCCA
* *
10886 GGGCCCTCCGGGTCCTCC
1 GGGCCCTCCAGGTCCACC
*
10904 GGGTCCTCCAGGTCCACC
1 GGGCCCTCCAGGTCCACC
10922 GGGCCCTCC
1 GGGCCCTCC
10931 CCAGCCTCCG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.04, C:0.49, G:0.31, T:0.16
Consensus pattern (18 bp):
GGGCCCTCCAGGTCCACC
Left flanking sequence: Indices 10386 -- 10885
TTGGTGGCGGACACCGAGGACGTGACCCACCGGGCACTCTCCGATGCGGTGGCTGATGCCGCCTA
CCTGGGGGTGCTTGGGTGCTGCATTATCAACGAGCACAACGTGGACTTGCAAACGTTTGAGGCTG
ACGCTGACGGTGGAGTCAAGTTTGACGAGTACGCGGCCATCGACCCCGACGAGGCCGCCAACTTG
CTCCAGACGGCTCGCCAAAAGCGCGGTGGCTCGGTTGCGCCCGCTCTGCCCGAGCCCAAGCCCAG
CCAGGCGCCTTCTGGGCCTCCTCCAGGCCAGGCTTATGGTGGCTTCCAGCCCCAGCCTCCGCAGT
TTGCTCCCTACGGGCCGCCTCCGCCCGGGTTCCAGCCTCCCTACGGCGCTACTCCACCCCCTATG
TCTCCCTACGGGGCCACACCGCCTCCGATGGCTCCCTACGGCAACGGGACCCCGCCTCCCGTGCC
GCCGTACTCGGGTGGCCCGCCGCCTATGCCCATGGGCTACCCCCA
Right flanking sequence: Indices 10931 -- 11430
CCAGCCTCCGTACGGTGGCTACAACAACTACCCTCCCCAACAGTACCCTCCGTTTGAGCCTCTGC
CACCGCAGGGCCCGGGACCCCAGCCGTTTGTGCCTTCTCCACCCACGGGTGCTCCCTGGAGTGGC
AACCGGTACTCGGAGGCCCGCAACGACAACAAGGGCTACAACCGGTACCAGGACCGCGGCGACCG
CGATCGCGGGGAACGGGGTAACGGGCCCACGCCGTACAACGTGGGCATAGCTGGCCATCAGCCGC
CCAAGAGCCGTGGAGGCCACCGGCGTGGTGGGCGCAAGCACGCCAAATATGACAACTACCTGTCC
TACGGTGCTCCCGGGTCGCAGTCGCTCCTGGGATCGCTGAAGTACGAGCAGTACTCGAACCAGTA
CCAGCAGCAAGCCCAGCAGCCGCCGGCCCAAGAGTCTGCTGAGCTGGGTAGCTCAAACTCGGCCC
CTTCGGGCGACGCCAAACTGTTGATGGACTCCATCGCTAAGCTTG
Found at i:14173 original size:10 final size:10
Alignment explanation
Indices: 14158--14185 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
14148 GTACCATGGA
14158 AGAAGGTTCT
1 AGAAGGTTCT
14168 AGAAGGTTCT
1 AGAAGGTTCT
14178 AGAAGGTT
1 AGAAGGTT
14186 GCCGGAATTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.32, C:0.07, G:0.32, T:0.29
Consensus pattern (10 bp):
AGAAGGTTCT
Left flanking sequence: Indices 13658 -- 14157
ATCTTTGTAAGCACCATCAGGGAAATCTCCTCGGGAGAGAAAGTCTTGTTCTCACCCTTGAACTC
CACCTGGATCACCGGCTTGCCGGCCTTGTCAACCACCTTGAAGGGGAAATGCTTCATGTCCTCCT
GGACCTCAGGGTCGTTGAATTTGCGGCCGATCAACCGCTTAGCGTCAAAAACGGTGTTGGCGGGG
TTCATCGCCGCCTGGTTCTTGGCAGCATCACCAATCAAACGCTCGGTGTCGGTGAATGCCACAAA
CGACGGGGTGGTTCGGTTACCCTGGTCGTTAGCAATAATGTCACATCTGTCGTTTTGGAACTGGG
CCACACAGGAATAGGTGGTTCCCAAGTCAATACCGATAGCTCTTGTCATTATGTGTTTGTTGTAA
AAAGTGAAGGACTAGAGATTGCCTCCCTCTGTATTTATACCAGTCTTGGCGTGGCTGTGGCAGCC
TTCTCGAACCTTCTGGGGGTTTCTCGAAGTATCGCGTACCATGGA
Right flanking sequence: Indices 14186 -- 14685
GCCGGAATTGGTGGCTAGGAGATGTTTGCGGGTGGTATGCCACCTACTGATGTGGTATGAGCCTT
GTAGTGTCAACGGTTTCGTGCTTTGTGGCCATTTACTCCCGATCTTGATCGGCTCAAATCTCGCT
ACAACCACCCTCCATATGATAATCTGCACTCAATTCCACAACCTGCAGCTTCTTGCATGTCACAT
CTATGTTCCTAGGTGCACAGCCCGCTGTAGATCCCAATTGCTGGCTAGCCAATGGCTCCCTCTCT
CCACCACCACCCACCGACCACCACTCACTCGGTCTAATAACTGCGCCCGTGGCCCAATGGCAAGG
CGTCACTTTCCGGTTACAATTGGATTACGGTGAAGATCGCGGGTTCGAATCCCGCCGGGCGTTCT
TTTTTGCATTCTGTCCACCCTAGCTCTCTGTAAAGCCCCCAAATCTGCCTCTCTCGAGTCCACGC
ATTGTGCTCACTAGGTCCAAACCGCGTTTTTCAATATTCGTTTTT
Found at i:15221 original size:15 final size:15
Alignment explanation
Indices: 15201--15231 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
15191 TACAATACAG
*
15201 CATAGGCACGGTCAC
1 CATAGGCACGGCCAC
15216 CATAGGCACGGCCAC
1 CATAGGCACGGCCAC
15231 C
1 C
15232 CCCGAAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.26, C:0.39, G:0.26, T:0.10
Consensus pattern (15 bp):
CATAGGCACGGCCAC
Left flanking sequence: Indices 14701 -- 15200
AGGTGACCAGTGCATCATAACCCAGACACCCCATCGCTTCCTCCCAATGACGGGGATAGAGCCCA
CATGGTATTATCTCCATCTTAAGGTGGTCCCCAGCACCGCGTTGGACGGCAAGAACGTCGACAAC
GAGGAGATCGACCTCATTTCGTGGAAAACGTTGGTGATGGCTGCCGTGTCCAACATGTACGGCCT
CGTGGGCAGCGCCAGCCACTTCGACGTGTTGCACCGCCAGGGGTTGGAGGCGGTCATTCGCATCC
AGCCCGAGGACGCGAACAAGTTCAGCACCGCGTTGATGGGCCACGCCATCTTGTTCAGCACCTAT
GTGTCCTCGATCCTGGCCCGACCCAACGTCGAGCATGAGGTGCCCAGTGCGGTAGAGGTGGTCAA
CCGAGGCCCGTGGTTGGGCGCAGTGATGTCGAAACCGTTGTTTGCTTGAGCCAGCGAGCCCTGTT
TGAGACCCAGTTCGGGACCCAGTTAGCATTTTTAGTACAATACAG
Right flanking sequence: Indices 15232 -- 15731
CCCGAAAAACCTTCCTATTAACTAAGTCTAATCTATTCTATGGTATTAAAGGTCGTCCTCGACCG
CTGGCATGTCAATGAGTTCGTTGAGTTCGTTCTTGATCGCGTCCACCTTGTCCTTCACCTGCTGC
TGGACCTCCTGCAACGCCCGCAGCTCGGCCCGCACTCCGAGGCCCCAGATGAGCCCGTTGATTAC
CCCCAGAATGCCCACGGCACACGAAATGAACATGATCACCCCGGCAGACACCGGGTCCATGCACA
CCAGCGAAAACACCACCACCAAATGGAGGGCAGCCACAATGGCTATCGACGAGAAGAAGTGGTGC
TTGCGCCACGCCAGCTGGTAGGGGATGGTGAACCGGCGGTACTTGGAGATTTCCAGCAACAAATC
GCGGTATACGGTGACCCGCTCCGTCAAATCCCGGAAGTCGGATTCAGCAACGGGGGCCACGGCTG
TGCCCAACTCCAGCGCACGGCTGGCTCGGGCAGCACGCGCAGCCC
Found at i:20764 original size:10 final size:10
Alignment explanation
Indices: 20749--20778 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
20739 TTTCATCCCA
20749 TCCAATGGCT
1 TCCAATGGCT
20759 TCCAATGGCT
1 TCCAATGGCT
20769 TCCAATGGCT
1 TCCAATGGCT
20779 CTGTCTAGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.20, C:0.30, G:0.20, T:0.30
Consensus pattern (10 bp):
TCCAATGGCT
Left flanking sequence: Indices 20249 -- 20748
AACTTGCGCAATGGGTTGGGGGGGATATAGTAGTAATTTATGTCATGTAAGGGTTGGGCGGTGGG
GGAAAGCAAGGTGTAGAGATGGTCTGAGATGGAGGGTTGGCCTTGACGGGATGGTGTTGGGATAT
GATAGTCTGCTACGATGGTCTTGAGCTATGAGAGTCTCGGCTATGGTAGTCTAGGGCTAAGCCAT
GGTTTTTGGTGCTCTCAATAGACTATGACAATATTCCTATACGTGTGTTACAACTATGGGGCGTA
TAAATCCGAAGGACTTTAGAGTAGAATCCACTCGCTGTAAGAGCCATGGTTTTGGTGTTCTCAAT
AGATTGCGTCGCTGTATTCCTATACGTGTGATACTACCGATGGGGCGTATAAATCCGATGGATTT
ATAGTAGAACCTTAGCTCGATGAATACTCAAGGTCTGAACTAACCCCGAACTAACACCAATGAGA
GGCAATCTAGCACGTTCTGACATCATTTCTTCCTTTTTCATCCCA
Right flanking sequence: Indices 20779 -- 21278
CTGTCTAGCACTTCGCCCTGTTTCTCCCTTCTCCTCATCGTCCCCTCAAATTCTTCGTGTATTGT
GCAATTAATACGTGCAGTGTGCCTAAGCATTCTATCTCTGACCAGCCAGTGGTCGTTCAGTCCAT
TCTACAGTCGTGCAAGAGCATCCGGGTTGTGGCGCCCAGGTGCATGTCCCCTACCGCATCAAGTG
GTCCACCACTTCCTTTTGTTTCACCATGATCTGGTGAAGGGTGTCGTCGTGCACACCCCTCTGGT
TGTTGAACTCCATCAATTTGGCGGGCTCGGCCACCCCGTAGGTGTGACCATTTTCCTCCACAAAC
ACCCCCAGGGGGTGCATTCGAACAAACTCCAGCGCCTGCTGTTCGTTGTCTATTTGGATGGCAAG
ACTCGAGGGTAGACTCATGAAGCAAACACTAGCACTAGGGGTTTGACGGCACCAGTATGTTCAGT
AGAACGGCAACACCTGCGGGTTCAGTGGCCACTAATATGACTTTG
Found at i:35087 original size:24 final size:23
Alignment explanation
Indices: 35058--35129 Score: 67
Period size: 24 Copynumber: 3.1 Consensus size: 23
35048 GAACGTCAGC
*
35058 CACCCCCACCGGGCCCGCAGCCCT
1 CACCCCCA-CGGGCCCGCAGCACT
* * *
35082 TACCCCCAAGGGGCCAGCAGCACT
1 CACCCCC-ACGGGCCCGCAGCACT
*
35106 CACTCCCACGGG-CC-CAGCACT
1 CACCCCCACGGGCCCGCAGCACT
35127 CAC
1 CAC
35130 AAAGACCCCA
Statistics
Matches: 39, Mismatches: 8, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
21 10 0.26
22 1 0.03
23 4 0.10
24 23 0.59
25 1 0.03
ACGTcount: A:0.19, C:0.53, G:0.21, T:0.07
Consensus pattern (23 bp):
CACCCCCACGGGCCCGCAGCACT
Left flanking sequence: Indices 34558 -- 35057
ATCTTGGTGGGGAAGACTGATGCCCACCAAGCGCAATTGGTGTTTCAATTGTGCGGACTGCCACT
AGAGTGGCCAGCAGCGATGCTGTTGCCCAACAAAACCGACTACAACCTAGGGCTCACGGCAAAAC
GCAGTTTGGAGACGAGGTTTTCGGAGTTGATGCCTCCGGAAGCCGTGGCATTGCTTGCACGGATG
CTCACATTAGACCCTTACAAACGAGCGAACGCGGCAGATGCAATGCGCGACCCGTTCTTTGCTGA
GGGCTTGCTAGATCCTCACGAGTTACCCAAGTTTGAGGAGTGTCACGAGATCGACAAGGAGCGGT
TCAAGCGTATGGGTCGAGGCACCAACGGACGGCCCAAATTTAACCCCGTGGGAGTGCCATCGGGC
CCGTCGTCAACCAGCGCGGCTCCTAGCGGGCCGGCAGTCACCTCGTACAAACCCCTCAATCCGAC
ACGACCGGCGATGGAGGTACCACGGATGCCGCGCGGAACGTCAGC
Right flanking sequence: Indices 35130 -- 35629
AAAGACCCCAAACGGGTCGCTGACGAAGCTCCTGGCAATGGCCGCCGCCGCGGCGACTTCGGCAA
AGGCATCGCCACTGCCGAAACCAGCCCCCTCCGCGGCCCTGGTGGCAGCAGCCTCATCGGTGTTT
ATGAAACGGAAGCGACCAGCACCTCCGTCCGAGACTTCAAAGCGGGCAAAAACGAGCACCCCGGA
AGAGTCTCGGGGACAGTAATAGCATACAATAGATAGCAGGGGCCACGATCGATGTCACCTGGCAC
AAACGCCGAGGGAAGTTGTAGATTACGCCGTCCAAGCTTTACGGGTTGCTACACCTGGGAAACAC
TATAAATGATCTCTGGGGTGCTTAGGCCCTTGAACGAAACCCGATGAAAAGTCAGATCAGTGCGT
CAGGGCTGTCGGCATAACCATTTTGCAAGTAGTGGTCATAGAGACCCCGTGAAGCGTGTGGGAAA
AAAAAATAATGTAGAAAACAAGGAGAGGTCGTAGCCAATCTTGGA
Found at i:41338 original size:3 final size:3
Alignment explanation
Indices: 41332--41356 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
41322 ACAACAACAA
41332 CAG CAG CAG CAG CAG CAG CAG CAG C
1 CAG CAG CAG CAG CAG CAG CAG CAG C
41357 CCCAATTTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.36, G:0.32, T:0.00
Consensus pattern (3 bp):
CAG
Left flanking sequence: Indices 40832 -- 41331
CGTTGGAGATCTTGCAGCAGGACCTGAAAGTGAATCCCAACCAGGATGAGATTGCGCCCGCGCTT
CCCCGGAGACGCCCTGGGATGGCGGGCCAGGCCACGGGAGCCCTGCCCGCTCCCAGTGCGCAGTC
AGCTCCTCAGGGTAGCGACGAGTGGTGGAACACCGCTGGCACGCCTCCGGTGGCGCTGACGCCCA
CGGGGCTTCCCGGAATGGTGTCGGGCCAGCCCCAAATCTACCAGTACACCGACCCTGTGACGGGC
CAGGTGTCGTACATCGACTCCAACGGGCAGCAGTACTTGGACCCGCTGAACCCGCAACACCAGCA
GCAGCTCATGCAACAAACCCCGCAGTTTTTGCAACAGCAGGCCACCAAACAAAACATTATGTCGA
TGTACAGCCAGCCCACGGGGGCCCAGCAGCCTCAGTTTGCTGCTGGGTTGGCTAACAATGCTACA
GGACAACCCACGATGGCCCAATTGCAACAACAACAACAACAACAA
Right flanking sequence: Indices 41357 -- 41856
CCCAATTTCAGCAACAGACCCAGCAGCCCCAGCAGCCCCAGCAGCAACAGTTCCAGCAGCCCCAG
CAGCAACAGTTCCAGCAGTTCCCTCAGCAGACGTACGGCCAACCCATGCAGCAGATGATGCCGCA
GAACACAATGGCAGGGTTTGGCCCTCAGGCTACGGGGTTCCAGCAGCAGCAGCAGCAGCAAAATC
AGTTTTTTTACGGTCGTTAGAAGGTAGGGTATACACATTTTGAGAAGAGGAGGAGGTGAGTTGAG
TAGTAGGCCATGTGTGGGCTATGAGTAGGCCATGAGTAGGCCCTGTGTAGGCCAGGTGTAGGCCA
TATTAGGTCATAAATAGTCCCTGTGTAGGTCAGGAGTAGGCCATGGTTCTAGTGAGACGCAGTAA
AAGAGAGATAAGAGAGATTTTTCACGCTAGGGGTGCAAACAGCGAAGTTGTACGGCTGCAATAAC
TTTTCAAATAGCAGCTAATATGATTAAACATTCAATGGCGGCTGT
Found at i:41389 original size:9 final size:9
Alignment explanation
Indices: 41375--41401 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
41365 CAGCAACAGA
41375 CCCAGCAGC
1 CCCAGCAGC
41384 CCCAGCAGC
1 CCCAGCAGC
41393 CCCAGCAGC
1 CCCAGCAGC
41402 AACAGTTCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.56, G:0.22, T:0.00
Consensus pattern (9 bp):
CCCAGCAGC
Left flanking sequence: Indices 40875 -- 41374
GGATGAGATTGCGCCCGCGCTTCCCCGGAGACGCCCTGGGATGGCGGGCCAGGCCACGGGAGCCC
TGCCCGCTCCCAGTGCGCAGTCAGCTCCTCAGGGTAGCGACGAGTGGTGGAACACCGCTGGCACG
CCTCCGGTGGCGCTGACGCCCACGGGGCTTCCCGGAATGGTGTCGGGCCAGCCCCAAATCTACCA
GTACACCGACCCTGTGACGGGCCAGGTGTCGTACATCGACTCCAACGGGCAGCAGTACTTGGACC
CGCTGAACCCGCAACACCAGCAGCAGCTCATGCAACAAACCCCGCAGTTTTTGCAACAGCAGGCC
ACCAAACAAAACATTATGTCGATGTACAGCCAGCCCACGGGGGCCCAGCAGCCTCAGTTTGCTGC
TGGGTTGGCTAACAATGCTACAGGACAACCCACGATGGCCCAATTGCAACAACAACAACAACAAC
AACAGCAGCAGCAGCAGCAGCAGCAGCCCCAATTTCAGCAACAGA
Right flanking sequence: Indices 41402 -- 41901
AACAGTTCCAGCAGCCCCAGCAGCAACAGTTCCAGCAGTTCCCTCAGCAGACGTACGGCCAACCC
ATGCAGCAGATGATGCCGCAGAACACAATGGCAGGGTTTGGCCCTCAGGCTACGGGGTTCCAGCA
GCAGCAGCAGCAGCAAAATCAGTTTTTTTACGGTCGTTAGAAGGTAGGGTATACACATTTTGAGA
AGAGGAGGAGGTGAGTTGAGTAGTAGGCCATGTGTGGGCTATGAGTAGGCCATGAGTAGGCCCTG
TGTAGGCCAGGTGTAGGCCATATTAGGTCATAAATAGTCCCTGTGTAGGTCAGGAGTAGGCCATG
GTTCTAGTGAGACGCAGTAAAAGAGAGATAAGAGAGATTTTTCACGCTAGGGGTGCAAACAGCGA
AGTTGTACGGCTGCAATAACTTTTCAAATAGCAGCTAATATGATTAAACATTCAATGGCGGCTGT
TTCACCTCTCGTTGTCTCCGTCTGGTCAATTATCATTCGCGTCAC
Found at i:41438 original size:15 final size:15
Alignment explanation
Indices: 41394--41439 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 15
41384 CCCAGCAGCC
41394 CCAGCAGCAACAGTT
1 CCAGCAGCAACAGTT
41409 CCAGCAGC--C----
1 CCAGCAGCAACAGTT
41418 CCAGCAGCAACAGTT
1 CCAGCAGCAACAGTT
41433 CCAGCAG
1 CCAGCAG
41440 TTCCCTCAGC
Statistics
Matches: 25, Mismatches: 0, Indels: 12
0.68 0.00 0.32
Matches are distributed among these distances:
9 8 0.32
11 1 0.04
13 1 0.04
15 15 0.60
ACGTcount: A:0.30, C:0.39, G:0.22, T:0.09
Consensus pattern (15 bp):
CCAGCAGCAACAGTT
Left flanking sequence: Indices 40894 -- 41393
CTTCCCCGGAGACGCCCTGGGATGGCGGGCCAGGCCACGGGAGCCCTGCCCGCTCCCAGTGCGCA
GTCAGCTCCTCAGGGTAGCGACGAGTGGTGGAACACCGCTGGCACGCCTCCGGTGGCGCTGACGC
CCACGGGGCTTCCCGGAATGGTGTCGGGCCAGCCCCAAATCTACCAGTACACCGACCCTGTGACG
GGCCAGGTGTCGTACATCGACTCCAACGGGCAGCAGTACTTGGACCCGCTGAACCCGCAACACCA
GCAGCAGCTCATGCAACAAACCCCGCAGTTTTTGCAACAGCAGGCCACCAAACAAAACATTATGT
CGATGTACAGCCAGCCCACGGGGGCCCAGCAGCCTCAGTTTGCTGCTGGGTTGGCTAACAATGCT
ACAGGACAACCCACGATGGCCCAATTGCAACAACAACAACAACAACAACAGCAGCAGCAGCAGCA
GCAGCAGCCCCAATTTCAGCAACAGACCCAGCAGCCCCAGCAGCC
Right flanking sequence: Indices 41440 -- 41939
TTCCCTCAGCAGACGTACGGCCAACCCATGCAGCAGATGATGCCGCAGAACACAATGGCAGGGTT
TGGCCCTCAGGCTACGGGGTTCCAGCAGCAGCAGCAGCAGCAAAATCAGTTTTTTTACGGTCGTT
AGAAGGTAGGGTATACACATTTTGAGAAGAGGAGGAGGTGAGTTGAGTAGTAGGCCATGTGTGGG
CTATGAGTAGGCCATGAGTAGGCCCTGTGTAGGCCAGGTGTAGGCCATATTAGGTCATAAATAGT
CCCTGTGTAGGTCAGGAGTAGGCCATGGTTCTAGTGAGACGCAGTAAAAGAGAGATAAGAGAGAT
TTTTCACGCTAGGGGTGCAAACAGCGAAGTTGTACGGCTGCAATAACTTTTCAAATAGCAGCTAA
TATGATTAAACATTCAATGGCGGCTGTTTCACCTCTCGTTGTCTCCGTCTGGTCAATTATCATTC
GCGTCACGTGTCCCTGCGGGCTCGGTAATGCCGGATGTATCCTGA
Found at i:41450 original size:24 final size:24
Alignment explanation
Indices: 41385--41439 Score: 110
Period size: 24 Copynumber: 2.3 Consensus size: 24
41375 CCCAGCAGCC
41385 CCAGCAGCCCCAGCAGCAACAGTT
1 CCAGCAGCCCCAGCAGCAACAGTT
41409 CCAGCAGCCCCAGCAGCAACAGTT
1 CCAGCAGCCCCAGCAGCAACAGTT
41433 CCAGCAG
1 CCAGCAG
41440 TTCCCTCAGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.29, C:0.42, G:0.22, T:0.07
Consensus pattern (24 bp):
CCAGCAGCCCCAGCAGCAACAGTT
Left flanking sequence: Indices 40885 -- 41384
GCGCCCGCGCTTCCCCGGAGACGCCCTGGGATGGCGGGCCAGGCCACGGGAGCCCTGCCCGCTCC
CAGTGCGCAGTCAGCTCCTCAGGGTAGCGACGAGTGGTGGAACACCGCTGGCACGCCTCCGGTGG
CGCTGACGCCCACGGGGCTTCCCGGAATGGTGTCGGGCCAGCCCCAAATCTACCAGTACACCGAC
CCTGTGACGGGCCAGGTGTCGTACATCGACTCCAACGGGCAGCAGTACTTGGACCCGCTGAACCC
GCAACACCAGCAGCAGCTCATGCAACAAACCCCGCAGTTTTTGCAACAGCAGGCCACCAAACAAA
ACATTATGTCGATGTACAGCCAGCCCACGGGGGCCCAGCAGCCTCAGTTTGCTGCTGGGTTGGCT
AACAATGCTACAGGACAACCCACGATGGCCCAATTGCAACAACAACAACAACAACAACAGCAGCA
GCAGCAGCAGCAGCAGCCCCAATTTCAGCAACAGACCCAGCAGCC
Right flanking sequence: Indices 41440 -- 41939
TTCCCTCAGCAGACGTACGGCCAACCCATGCAGCAGATGATGCCGCAGAACACAATGGCAGGGTT
TGGCCCTCAGGCTACGGGGTTCCAGCAGCAGCAGCAGCAGCAAAATCAGTTTTTTTACGGTCGTT
AGAAGGTAGGGTATACACATTTTGAGAAGAGGAGGAGGTGAGTTGAGTAGTAGGCCATGTGTGGG
CTATGAGTAGGCCATGAGTAGGCCCTGTGTAGGCCAGGTGTAGGCCATATTAGGTCATAAATAGT
CCCTGTGTAGGTCAGGAGTAGGCCATGGTTCTAGTGAGACGCAGTAAAAGAGAGATAAGAGAGAT
TTTTCACGCTAGGGGTGCAAACAGCGAAGTTGTACGGCTGCAATAACTTTTCAAATAGCAGCTAA
TATGATTAAACATTCAATGGCGGCTGTTTCACCTCTCGTTGTCTCCGTCTGGTCAATTATCATTC
GCGTCACGTGTCCCTGCGGGCTCGGTAATGCCGGATGTATCCTGA
Found at i:41653 original size:11 final size:11
Alignment explanation
Indices: 41618--41682 Score: 67
Period size: 11 Copynumber: 5.9 Consensus size: 11
41608 TGAGTTGAGT
41618 AGTAGGCCATG
1 AGTAGGCCATG
* * *
41629 TGTGGGCTATG
1 AGTAGGCCATG
41640 AGTAGGCCATG
1 AGTAGGCCATG
*
41651 AGTAGGCCCTG
1 AGTAGGCCATG
* *
41662 TGTAGGCCAGG
1 AGTAGGCCATG
*
41673 TGTAGGCCAT
1 AGTAGGCCAT
41683 ATTAGGTCAT
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
11 43 1.00
ACGTcount: A:0.20, C:0.18, G:0.38, T:0.23
Consensus pattern (11 bp):
AGTAGGCCATG
Left flanking sequence: Indices 41118 -- 41617
GCAGCAGTACTTGGACCCGCTGAACCCGCAACACCAGCAGCAGCTCATGCAACAAACCCCGCAGT
TTTTGCAACAGCAGGCCACCAAACAAAACATTATGTCGATGTACAGCCAGCCCACGGGGGCCCAG
CAGCCTCAGTTTGCTGCTGGGTTGGCTAACAATGCTACAGGACAACCCACGATGGCCCAATTGCA
ACAACAACAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCCCCAATTTCAGCAACAGACCC
AGCAGCCCCAGCAGCCCCAGCAGCAACAGTTCCAGCAGCCCCAGCAGCAACAGTTCCAGCAGTTC
CCTCAGCAGACGTACGGCCAACCCATGCAGCAGATGATGCCGCAGAACACAATGGCAGGGTTTGG
CCCTCAGGCTACGGGGTTCCAGCAGCAGCAGCAGCAGCAAAATCAGTTTTTTTACGGTCGTTAGA
AGGTAGGGTATACACATTTTGAGAAGAGGAGGAGGTGAGTTGAGT
Right flanking sequence: Indices 41683 -- 42182
ATTAGGTCATAAATAGTCCCTGTGTAGGTCAGGAGTAGGCCATGGTTCTAGTGAGACGCAGTAAA
AGAGAGATAAGAGAGATTTTTCACGCTAGGGGTGCAAACAGCGAAGTTGTACGGCTGCAATAACT
TTTCAAATAGCAGCTAATATGATTAAACATTCAATGGCGGCTGTTTCACCTCTCGTTGTCTCCGT
CTGGTCAATTATCATTCGCGTCACGTGTCCCTGCGGGCTCGGTAATGCCGGATGTATCCTGAATG
CATTGTCGTTTCTATGCATGATAAGGTGTACGGTTGCAAACTGATTGGGCGGTAGTGGGTTGGTT
GCGGCGGGAAAATGTGGGCACGGCAGCCACGGCTCGGCTGTGGTAGGAGTAGCTACCTTGTTTTG
GTGTCTTTTAGCGTTTCGACCTGTCCGTGGTGCATTTGACTCGTGTCATTTGGGCCAGGGGAGGT
ACGACGATCACCAGATGTCTGTAGATCCCTTCGTGAAACCAACTA
Found at i:41657 original size:33 final size:33
Alignment explanation
Indices: 41618--41682 Score: 85
Period size: 33 Copynumber: 2.0 Consensus size: 33
41608 TGAGTTGAGT
* * *
41618 AGTAGGCCATGTGTGGGCTATGAGTAGGCCATG
1 AGTAGGCCATGTGTAGGCCAGGAGTAGGCCATG
* *
41651 AGTAGGCCCTGTGTAGGCCAGGTGTAGGCCAT
1 AGTAGGCCATGTGTAGGCCAGGAGTAGGCCAT
41683 ATTAGGTCAT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.20, C:0.18, G:0.38, T:0.23
Consensus pattern (33 bp):
AGTAGGCCATGTGTAGGCCAGGAGTAGGCCATG
Left flanking sequence: Indices 41118 -- 41617
GCAGCAGTACTTGGACCCGCTGAACCCGCAACACCAGCAGCAGCTCATGCAACAAACCCCGCAGT
TTTTGCAACAGCAGGCCACCAAACAAAACATTATGTCGATGTACAGCCAGCCCACGGGGGCCCAG
CAGCCTCAGTTTGCTGCTGGGTTGGCTAACAATGCTACAGGACAACCCACGATGGCCCAATTGCA
ACAACAACAACAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCCCCAATTTCAGCAACAGACCC
AGCAGCCCCAGCAGCCCCAGCAGCAACAGTTCCAGCAGCCCCAGCAGCAACAGTTCCAGCAGTTC
CCTCAGCAGACGTACGGCCAACCCATGCAGCAGATGATGCCGCAGAACACAATGGCAGGGTTTGG
CCCTCAGGCTACGGGGTTCCAGCAGCAGCAGCAGCAGCAAAATCAGTTTTTTTACGGTCGTTAGA
AGGTAGGGTATACACATTTTGAGAAGAGGAGGAGGTGAGTTGAGT
Right flanking sequence: Indices 41683 -- 42182
ATTAGGTCATAAATAGTCCCTGTGTAGGTCAGGAGTAGGCCATGGTTCTAGTGAGACGCAGTAAA
AGAGAGATAAGAGAGATTTTTCACGCTAGGGGTGCAAACAGCGAAGTTGTACGGCTGCAATAACT
TTTCAAATAGCAGCTAATATGATTAAACATTCAATGGCGGCTGTTTCACCTCTCGTTGTCTCCGT
CTGGTCAATTATCATTCGCGTCACGTGTCCCTGCGGGCTCGGTAATGCCGGATGTATCCTGAATG
CATTGTCGTTTCTATGCATGATAAGGTGTACGGTTGCAAACTGATTGGGCGGTAGTGGGTTGGTT
GCGGCGGGAAAATGTGGGCACGGCAGCCACGGCTCGGCTGTGGTAGGAGTAGCTACCTTGTTTTG
GTGTCTTTTAGCGTTTCGACCTGTCCGTGGTGCATTTGACTCGTGTCATTTGGGCCAGGGGAGGT
ACGACGATCACCAGATGTCTGTAGATCCCTTCGTGAAACCAACTA
Found at i:41666 original size:22 final size:22
Alignment explanation
Indices: 41641--41723 Score: 69
Period size: 22 Copynumber: 3.8 Consensus size: 22
41631 TGGGCTATGA
*
41641 GTAGGCCATGAGTAGGCCCTGT
1 GTAGGCCAGGAGTAGGCCCTGT
* * *
41663 GTAGGCCAGGTGTAGGCCATAT
1 GTAGGCCAGGAGTAGGCCCTGT
* ** * *
41685 -TAGGTCATAAATAGTCCCTGT
1 GTAGGCCAGGAGTAGGCCCTGT
*
41706 GTAGGTCAGGAGTAGGCC
1 GTAGGCCAGGAGTAGGCC
41724 ATGGTTCTAG
Statistics
Matches: 44, Mismatches: 16, Indels: 2
0.71 0.26 0.03
Matches are distributed among these distances:
21 13 0.30
22 31 0.70
ACGTcount: A:0.23, C:0.19, G:0.34, T:0.24
Consensus pattern (22 bp):
GTAGGCCAGGAGTAGGCCCTGT
Left flanking sequence: Indices 41141 -- 41640
ACCCGCAACACCAGCAGCAGCTCATGCAACAAACCCCGCAGTTTTTGCAACAGCAGGCCACCAAA
CAAAACATTATGTCGATGTACAGCCAGCCCACGGGGGCCCAGCAGCCTCAGTTTGCTGCTGGGTT
GGCTAACAATGCTACAGGACAACCCACGATGGCCCAATTGCAACAACAACAACAACAACAACAGC
AGCAGCAGCAGCAGCAGCAGCCCCAATTTCAGCAACAGACCCAGCAGCCCCAGCAGCCCCAGCAG
CAACAGTTCCAGCAGCCCCAGCAGCAACAGTTCCAGCAGTTCCCTCAGCAGACGTACGGCCAACC
CATGCAGCAGATGATGCCGCAGAACACAATGGCAGGGTTTGGCCCTCAGGCTACGGGGTTCCAGC
AGCAGCAGCAGCAGCAAAATCAGTTTTTTTACGGTCGTTAGAAGGTAGGGTATACACATTTTGAG
AAGAGGAGGAGGTGAGTTGAGTAGTAGGCCATGTGTGGGCTATGA
Right flanking sequence: Indices 41724 -- 42223
ATGGTTCTAGTGAGACGCAGTAAAAGAGAGATAAGAGAGATTTTTCACGCTAGGGGTGCAAACAG
CGAAGTTGTACGGCTGCAATAACTTTTCAAATAGCAGCTAATATGATTAAACATTCAATGGCGGC
TGTTTCACCTCTCGTTGTCTCCGTCTGGTCAATTATCATTCGCGTCACGTGTCCCTGCGGGCTCG
GTAATGCCGGATGTATCCTGAATGCATTGTCGTTTCTATGCATGATAAGGTGTACGGTTGCAAAC
TGATTGGGCGGTAGTGGGTTGGTTGCGGCGGGAAAATGTGGGCACGGCAGCCACGGCTCGGCTGT
GGTAGGAGTAGCTACCTTGTTTTGGTGTCTTTTAGCGTTTCGACCTGTCCGTGGTGCATTTGACT
CGTGTCATTTGGGCCAGGGGAGGTACGACGATCACCAGATGTCTGTAGATCCCTTCGTGAAACCA
ACTATTCATACTCTCAGACGCCCCACACGTACCTCGCTTCAGCCG
Found at i:51373 original size:10 final size:10
Alignment explanation
Indices: 51358--51383 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
51348 ACAGGTGAGG
51358 AGGTGGGGAA
1 AGGTGGGGAA
51368 AGGTGGGGAA
1 AGGTGGGGAA
51378 AGGTGG
1 AGGTGG
51384 AGAATGCCCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.62, T:0.12
Consensus pattern (10 bp):
AGGTGGGGAA
Left flanking sequence: Indices 50858 -- 51357
TGTAGGGGTCCATCCACAGCACCAATTGCTCGCTAAACATAAACACAAACGTCCCCACAAACAAG
CAGGCGGCTCCAACAAACCCGCACGTGCGTGGACCATAGGTGTCCAACACCCGCCCGATGACAAT
CAGGGCGATGTTGGTCAAACTGGCACCCACTGTGAACAACATGTTGAGCTTCAAGTCCTGTTCGG
CACACTGGGCACCCGAAGAAGTCACCTCGGTGGTGTGGACCTTGCACACGTGCTCATACACCCCC
TCAGCAACCAAAATGGGCTTGAGAGCAGCGAAGCCAAAGATGATGCCGGCGGATAACAAGCACCA
GAGGGTAGCACAGGTGCATTGGGCCACACGAGTGGTCGAAGACACCTCGGAACCTAGCATTGGGA
TATTTGGCAAGTGGTGATCGTTCCGCGGGTCCAGATGCATGAAACGTTCGATGCGGCTGATAAGG
GACCTGGTGCAGGTGGAAGGTAGACTCGAGAGGGGACAGGTGAGG
Right flanking sequence: Indices 51384 -- 51883
AGAATGCCCAGGAGAGAAATGCCACAACGTCACAAGCCCCAATTACCATTCCAACAGGGGACACG
CTTGCGCAACACGCATTCTACCCACCAGTACAACTACGTCAGTGTTTCATGTGGAAAAAGCACTC
AACAGCCCACTTCCCAGGTCAACTGACCTCGTAAGTCTCTACACTTTTCCAATTGGTATACAATA
AACGTTTATACACGATCGTTCACGGGCCCTCGGCGGGCTGGGCCTGCTTCTCATCCACGGGCTCC
TCTTCGACGTCCACCTCCACGGCCTCGACCTCCTCCACGGGAGCGTCCTCGGCCTCGTCGGTCTC
CTGCTCCTCAAACTCGGGAACCAACTGCTCCTCGGCCTGGGGCTCCTTGACGTCGTTGACGGCGT
CGTTCTTGGGGGACACGTCCTCGACCTCCGCGGCCTTGTCCTCCTTCAGCTTCGCGTGGATGGCA
GCCGCCTTGGCGTCAAACTCGCCCTGGTTGGGAGGAGCAATCTTC
Found at i:59621 original size:27 final size:27
Alignment explanation
Indices: 59582--59643 Score: 79
Period size: 27 Copynumber: 2.3 Consensus size: 27
59572 CCTTGAAAAG
* *
59582 CAAGGCTATCCTCCTCAAACACCTCAA
1 CAAGGCTACCCTCCCCAAACACCTCAA
* * *
59609 CAAGGGTACCCTCCCCAAGCACCTCAG
1 CAAGGCTACCCTCCCCAAACACCTCAA
59636 CAAGGCTA
1 CAAGGCTA
59644 TCCATCAAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.31, C:0.40, G:0.15, T:0.15
Consensus pattern (27 bp):
CAAGGCTACCCTCCCCAAACACCTCAA
Left flanking sequence: Indices 59082 -- 59581
TCTAGCCCCAAGGCTTGGTCTAACGGATGACCATACCGTATGATCCCATGGCTAAACGGGAGGCT
TACACTGAGGCTTCTATGAGGCTTAAAGATTATCGGTTCTTGATCGTGACTCAGCCTGTCGTGTT
CGGGTAAAACACGGAGCATTTACGAGGACGAACCAAATTACGTGAAGGGGTGATTGGTCCTTTGT
AACAAGTGTGGTGGCTGATGTAGAAGTCATTGCCTTTCTGCATGGAAGCAGCCGCAATAGCACGG
GTGTTTGTTATGTGATGGGGCTATGCATTATGCATAATGCACACATTCAGCCCTGTCACACGGCT
CTTGACAGAATACGAAACTCTATCCATGCTATAAATTGAGTGATGTACCTACACGTATCAAATCA
TGGACGAGAAACACAACAACTGGAACCAGCAAACCCAGCAGAGCCCACCCCTGTACGCGGGTAAT
CCCGGAATGCCCCCTACGGGCCCAAACGGGTACCCCCTTGAAAAG
Right flanking sequence: Indices 59644 -- 60143
TCCATCAAATGGACAGTATGGCGCCAACCCGCCCCCCATCACCGGTAAGGACTACCAAGCTGATT
TCAAGGATCACCCTCCCGAGTACCAGGAGGTCGAGAAAGTCACCAATGCTGACTTGACCCCAGCA
TTTATGTCGGTGTTTGGGTGCAATCGCCTTCACGTCAAGCGCCACAACGAGCCATTGAACCAGTG
GTTGGGCTGGGACTGTTTGAACCAGTACCTGATCACCAACGAACAGGGCAACACCGTGGGGTACA
TCCGAGAGAGGGACTCTGGAAGCATGAAGGCAGTGCTCCAGCGGCAGATGAGTAACACCGGACGG
GCCTACGTCATTGAATTTTTTGATGTCTACGGTATTCCGATTTTGATGGTGTCCCGGGGCTTCAC
TTTGATGAAATCCAATGTTGGGGTATTTTTGGTGGGCGTGGACCATCAGGGGCAACCTGCGTACA
AAAGAGTGGGGTTCTCTAAGGAGAAATACCACCTCGTCAAGCGCA
Found at i:67480 original size:9 final size:9
Alignment explanation
Indices: 67466--67534 Score: 93
Period size: 9 Copynumber: 7.7 Consensus size: 9
67456 TCACTTGACC
*
67466 GGTGACCAT
1 GGTGACAAT
*
67475 GGTGACGAT
1 GGTGACAAT
*
67484 GGTGACGAT
1 GGTGACAAT
*
67493 GGTGACAAG
1 GGTGACAAT
*
67502 GGTGACAAG
1 GGTGACAAT
67511 GGTGACAAT
1 GGTGACAAT
67520 GGTGACAAT
1 GGTGACAAT
67529 GGTGAC
1 GGTGAC
67535 GACGCTGCCC
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 56 1.00
ACGTcount: A:0.28, C:0.13, G:0.41, T:0.19
Consensus pattern (9 bp):
GGTGACAAT
Left flanking sequence: Indices 66966 -- 67465
TGGGGGGTCACAGTTTTCCTCATTGGTGTTGGAAGTAACGGTATATAAATGGGTGGAGGGGGTCC
CTAAACCGCCAGTATTCACACACCATGCGTTTCACTTTATCTATTGCTGCCTTTATTTCTCTAGC
CGTGTCTGCCGGCGTCCACATGGTCCAGCTTGACAACCTTCCCTTCGAGTTGGATGGTGATATCA
AGCAGAAGGAGGGCCAAAAAGTCGAGTTGTACAACAACGGGGACGGACTGTTAGTTGACTGGAAG
GCTGACAAGTACGTCGCTTTAAAGGATGGCAAGCTCCTGTACTCCGACGCTCCAGGCGAGGGTAC
ATGGACTATCAAGAGCGGCAGCTTGGTTAACAGCCAGGCTCCTGACGAAGCAATCAAAGTGGGTG
CTAGCACCAGTGACGAAGACTACACCCCAGGCCAGGGAAAGCCCCACCAGTATCAAGACCTGGAG
GAGGAAGGGGATGGTGATGATGCCACCTACGAAGTTCACTTGACC
Right flanking sequence: Indices 67535 -- 68034
GACGCTGCCCCTGCCGTTCAAGCTTCTACCGACGGTGGCGATGGCGACGATAAAGGTGACAACTC
CGCGCAGGAGGGTGTCCCCACCGTCGCGCCTATGATCAATGCTGGAAACATTCCTCAATTCGGTG
TTGCTGCTGCCGTGGCCGCTGGTCTTGTTCTCCTCGCTTGAGTGAACAGACTGTATTAGGATAGT
CTACTGAAATATACAATGTTGTTCGGTTGTTGTAGCCCGTAGCCAAGACTGTAGAATTCGGGAAT
ATTTCGGAAAAATTGACATATGCTCTGGGAGAAAGTGTAGTCTACCGTGTGATTCTTCGATGATT
CCAAGGGCCCCTATACCCTGTTTCAACCCACGTGTAAGGCGTGGGGAGATTAGTACAAAGGTCTA
CGAATGCAGGGAATAGTTGCATACAGCGGTGTTCCCGTCACTCGTCCGAGCTGAACGAGAAACCC
ATAACTCAAACAAATACAATAGCTGAGCTAGCTGAGAGCTAGCTT
Found at i:71397 original size:15 final size:15
Alignment explanation
Indices: 71379--71415 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
71369 TGTAGTGGTT
71379 GGACTCGTAGCGGTA
1 GGACTCGTAGCGGTA
*
71394 GGACTCGTAGCGGTC
1 GGACTCGTAGCGGTA
71409 GGACTCG
1 GGACTCG
71416 AACGGGTCCA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.16, C:0.24, G:0.41, T:0.19
Consensus pattern (15 bp):
GGACTCGTAGCGGTA
Left flanking sequence: Indices 70879 -- 71378
AATGGCCCGCTGGGCGGCGGTGGCGGTGTCACCCTGGCTCGGCTACCGTCGCTGGCGTCTAACAA
TGGTTTCATCGAACGATTATCCCGGCCGGAAAAAATATCCCTAGACGACGTGTCGTGCTGCCGGG
AGCCGGGCGTTATGTCCCGAACGGGCTCGGCCCACTCGTGGTGCGTGTCGGGGAATGCACGGTTG
GCATGTCGGTTCCGGGTGGGATCTGCGGTTGCTGCTAGCGCCGTCTGCGGCCCCCCGGTGTGGTG
GAGGACAACGCGGGGTTATCGTGGTCCCCTGGCGGTGGTGGCCTCCACGGCGTGTATACTGCGCC
TATTTTTTAGCACAGATGCTTGATGATGCAGGTATTTTGGCCGCTTTCTGTTAGGATGACGCGAA
AAGCTTAATCGCGAATATTATCGTTAGTGGTGCCTATTCGAGCCCGTCGTAGTTCGTGGCTGTGC
CCTACGGGGTAACTAGAAAATAGCAGTTGGGCTCGTGTAGTGGTT
Right flanking sequence: Indices 71416 -- 71915
AACGGGTCCAATCCGTATTGGTTGGACTCCATGCGTCAGCGTTCCCTCGCCACCTCTTACCGGCG
ACACGCATACACAAACTGCAGCCCAGCCCACCCAGTATCTCGCTTATAGAACGAGGCGATAGTGG
TCACTGGACCCCACCCGCCGCGGCCGAGCAGCAGCTGGCGACGCCAGGGTCCGTGATACGCGACA
CGCCCGCCAGCCACGTTGCCACGTAGCCCGTTTGCCTGTCCCTCGGCTATCACCTGCTGACCCAC
ACCACGGTGTGCGGCCACCCACCACACGCGGCACCCAACCAGTACGCGGCCACCCCGTAGACTAA
TGGGACTAACCACTCGGTACGAGCGAGGCGTGGGCCAATGCGTGGATCGGCGCTAGCTTAAACTT
TAACCTCGCCAACGGCGATGCCGCAAAAGAGGGGAACCCGTTGTGGTGGCCACGGACCCGGTCCC
TGGGTAAAGTCACCCGATCGCTGGGGAGATGGTGCATAAACTGCG
Found at i:71706 original size:17 final size:19
Alignment explanation
Indices: 71686--71730 Score: 60
Period size: 17 Copynumber: 2.5 Consensus size: 19
71676 ACCACGGTGT
71686 GCGGCCACCC-ACCA-CAC
1 GCGGCCACCCAACCAGCAC
*
71703 GCGG-CACCCAACCAGTAC
1 GCGGCCACCCAACCAGCAC
71721 GCGGCCACCC
1 GCGGCCACCC
71731 CGTAGACTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 5 0.21
17 8 0.33
18 6 0.25
19 5 0.21
ACGTcount: A:0.22, C:0.53, G:0.22, T:0.02
Consensus pattern (19 bp):
GCGGCCACCCAACCAGCAC
Left flanking sequence: Indices 71186 -- 71685
CGGCGTGTATACTGCGCCTATTTTTTAGCACAGATGCTTGATGATGCAGGTATTTTGGCCGCTTT
CTGTTAGGATGACGCGAAAAGCTTAATCGCGAATATTATCGTTAGTGGTGCCTATTCGAGCCCGT
CGTAGTTCGTGGCTGTGCCCTACGGGGTAACTAGAAAATAGCAGTTGGGCTCGTGTAGTGGTTGG
ACTCGTAGCGGTAGGACTCGTAGCGGTCGGACTCGAACGGGTCCAATCCGTATTGGTTGGACTCC
ATGCGTCAGCGTTCCCTCGCCACCTCTTACCGGCGACACGCATACACAAACTGCAGCCCAGCCCA
CCCAGTATCTCGCTTATAGAACGAGGCGATAGTGGTCACTGGACCCCACCCGCCGCGGCCGAGCA
GCAGCTGGCGACGCCAGGGTCCGTGATACGCGACACGCCCGCCAGCCACGTTGCCACGTAGCCCG
TTTGCCTGTCCCTCGGCTATCACCTGCTGACCCACACCACGGTGT
Right flanking sequence: Indices 71731 -- 72230
CGTAGACTAATGGGACTAACCACTCGGTACGAGCGAGGCGTGGGCCAATGCGTGGATCGGCGCTA
GCTTAAACTTTAACCTCGCCAACGGCGATGCCGCAAAAGAGGGGAACCCGTTGTGGTGGCCACGG
ACCCGGTCCCTGGGTAAAGTCACCCGATCGCTGGGGAGATGGTGCATAAACTGCGTGAAACGTGG
CGTCATTGCCAGGCCCGAGAAACCCGCACGTTCCACGCGGAGCACGCGCGGTGCCCGTGGACGAG
GCCCTACTGCCGTCTTCTACAATGGCCCCCCTCGAACTGCCCGCAAAACACGTGGTTTCCGCTCC
CCACCCCCTGAACTGGTGGGTCTCGGAGTGTCGTCACGAGGCGTCAAGCATGGCGAATCGGGGAG
TGCAGGACGAGTCAGGGCCGGCTGACGGGACCACCGCGGGCCCGGTGGCGTGGTGGTGCGGTGGG
CCGCCTCGCCTCGGGCTCTCGCCGCCAGCGGTGCCAGGGCGCCCT
Found at i:72434 original size:10 final size:10
Alignment explanation
Indices: 72419--72443 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
72409 TACCAGCGTG
72419 CCACACGCAA
1 CCACACGCAA
72429 CCACACGCAA
1 CCACACGCAA
72439 CCACA
1 CCACA
72444 TAGCCGTCCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.52, G:0.08, T:0.00
Consensus pattern (10 bp):
CCACACGCAA
Left flanking sequence: Indices 71919 -- 72418
AACGTGGCGTCATTGCCAGGCCCGAGAAACCCGCACGTTCCACGCGGAGCACGCGCGGTGCCCGT
GGACGAGGCCCTACTGCCGTCTTCTACAATGGCCCCCCTCGAACTGCCCGCAAAACACGTGGTTT
CCGCTCCCCACCCCCTGAACTGGTGGGTCTCGGAGTGTCGTCACGAGGCGTCAAGCATGGCGAAT
CGGGGAGTGCAGGACGAGTCAGGGCCGGCTGACGGGACCACCGCGGGCCCGGTGGCGTGGTGGTG
CGGTGGGCCGCCTCGCCTCGGGCTCTCGCCGCCAGCGGTGCCAGGGCGCCCTCGATGGCGCCGCC
GGCCACTCGCGTTCCAGTCGAATCCGGGTTCCGACACCCTGATTATTTTTTGGAGGCGACAGCGG
CTCGACGCACGACTTGCCAGGGAAGGCTAATCGACGATGGAATTCTGGCGTCGGAATGTGGAGCC
AAGCTCGTGACTGGAGGAGGCAAGGCGTACCAGCGTACCAGCGTG
Right flanking sequence: Indices 72444 -- 72943
TAGCCGTCCCATAACCAGCCCAGAACCTACCCCACCCGTAGCCATAACCCACGCGTCACCACGCA
CTCGTCTCCTCCACCCTACACACAACCCACCCACGCACTTGTCATCCACGCACCCGTCACCCACC
TTACCTACGCCAGCGTCACCCACCTGACCGGCGCCTGGTGTCCCCGGGCGCCCTAAACCACGCCA
AACCACCGCCACCACCGCCAACCACCGCCACCACCGCCAACCACCGCCAACCACCGCCAAACCAC
GCCAATGCCACGGCCGCGAACACTTCCGTAACCCCTACACTCCCTACGTAACCGCGTAAACCACC
ACCCACATTCACACCACCTCACCACCTCACCAAATCACCCACTCTACCACTCTACCAATCTACCA
CTCTACCAATCTACCACTCTACCCACACCACCCACACCACCCATTCTCCCACTCTACCACCCTTA
CCTACACCCCACACCCCTCACCCACCACCACCACCACCACCCCTC
Found at i:72608 original size:24 final size:24
Alignment explanation
Indices: 72563--72608 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
72553 TCCACGCACC
* *
72563 CGTCACCCACCTTACCTACGCCAG
1 CGTCACCCACCTGACCGACGCCAG
*
72587 CGTCACCCACCTGACCGGCGCC
1 CGTCACCCACCTGACCGACGCC
72609 TGGTGTCCCC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.17, C:0.52, G:0.17, T:0.13
Consensus pattern (24 bp):
CGTCACCCACCTGACCGACGCCAG
Left flanking sequence: Indices 72063 -- 72562
CTGAACTGGTGGGTCTCGGAGTGTCGTCACGAGGCGTCAAGCATGGCGAATCGGGGAGTGCAGGA
CGAGTCAGGGCCGGCTGACGGGACCACCGCGGGCCCGGTGGCGTGGTGGTGCGGTGGGCCGCCTC
GCCTCGGGCTCTCGCCGCCAGCGGTGCCAGGGCGCCCTCGATGGCGCCGCCGGCCACTCGCGTTC
CAGTCGAATCCGGGTTCCGACACCCTGATTATTTTTTGGAGGCGACAGCGGCTCGACGCACGACT
TGCCAGGGAAGGCTAATCGACGATGGAATTCTGGCGTCGGAATGTGGAGCCAAGCTCGTGACTGG
AGGAGGCAAGGCGTACCAGCGTACCAGCGTGCCACACGCAACCACACGCAACCACATAGCCGTCC
CATAACCAGCCCAGAACCTACCCCACCCGTAGCCATAACCCACGCGTCACCACGCACTCGTCTCC
TCCACCCTACACACAACCCACCCACGCACTTGTCATCCACGCACC
Right flanking sequence: Indices 72609 -- 73108
TGGTGTCCCCGGGCGCCCTAAACCACGCCAAACCACCGCCACCACCGCCAACCACCGCCACCACC
GCCAACCACCGCCAACCACCGCCAAACCACGCCAATGCCACGGCCGCGAACACTTCCGTAACCCC
TACACTCCCTACGTAACCGCGTAAACCACCACCCACATTCACACCACCTCACCACCTCACCAAAT
CACCCACTCTACCACTCTACCAATCTACCACTCTACCAATCTACCACTCTACCCACACCACCCAC
ACCACCCATTCTCCCACTCTACCACCCTTACCTACACCCCACACCCCTCACCCACCACCACCACC
ACCACCCCTCACCACCAATTGACCGATCCCCCTGACGGGCTCGTTCCCCCTCCTCGCGGGCTCCA
AAAAAATATCCGCAGCAGGCTAAAATTTTGCACCAAAAATTCAAATAAACACACGTCGCGCCAAA
AGACACCTCACGTTCCCGAGTCCGTGCACCGTCGATGAGAAAGAT
Found at i:72643 original size:10 final size:10
Alignment explanation
Indices: 72629--72708 Score: 114
Period size: 10 Copynumber: 8.2 Consensus size: 10
72619 GGGCGCCCTA
72629 AACCA-CGCC
1 AACCACCGCC
72638 AAACCACCGCC
1 -AACCACCGCC
72649 -ACCACCGCC
1 AACCACCGCC
72658 AACCACCGCC
1 AACCACCGCC
72668 -ACCACCGCC
1 AACCACCGCC
72677 AACCACCGCC
1 AACCACCGCC
72687 AACCACCGCC
1 AACCACCGCC
72697 AAACCA-CGCC
1 -AACCACCGCC
72707 AA
1 AA
72709 TGCCACGGCC
Statistics
Matches: 66, Mismatches: 0, Indels: 9
0.88 0.00 0.12
Matches are distributed among these distances:
9 20 0.30
10 37 0.56
11 9 0.14
ACGTcount: A:0.33, C:0.57, G:0.10, T:0.00
Consensus pattern (10 bp):
AACCACCGCC
Left flanking sequence: Indices 72129 -- 72628
GAGTCAGGGCCGGCTGACGGGACCACCGCGGGCCCGGTGGCGTGGTGGTGCGGTGGGCCGCCTCG
CCTCGGGCTCTCGCCGCCAGCGGTGCCAGGGCGCCCTCGATGGCGCCGCCGGCCACTCGCGTTCC
AGTCGAATCCGGGTTCCGACACCCTGATTATTTTTTGGAGGCGACAGCGGCTCGACGCACGACTT
GCCAGGGAAGGCTAATCGACGATGGAATTCTGGCGTCGGAATGTGGAGCCAAGCTCGTGACTGGA
GGAGGCAAGGCGTACCAGCGTACCAGCGTGCCACACGCAACCACACGCAACCACATAGCCGTCCC
ATAACCAGCCCAGAACCTACCCCACCCGTAGCCATAACCCACGCGTCACCACGCACTCGTCTCCT
CCACCCTACACACAACCCACCCACGCACTTGTCATCCACGCACCCGTCACCCACCTTACCTACGC
CAGCGTCACCCACCTGACCGGCGCCTGGTGTCCCCGGGCGCCCTA
Right flanking sequence: Indices 72709 -- 73208
TGCCACGGCCGCGAACACTTCCGTAACCCCTACACTCCCTACGTAACCGCGTAAACCACCACCCA
CATTCACACCACCTCACCACCTCACCAAATCACCCACTCTACCACTCTACCAATCTACCACTCTA
CCAATCTACCACTCTACCCACACCACCCACACCACCCATTCTCCCACTCTACCACCCTTACCTAC
ACCCCACACCCCTCACCCACCACCACCACCACCACCCCTCACCACCAATTGACCGATCCCCCTGA
CGGGCTCGTTCCCCCTCCTCGCGGGCTCCAAAAAAATATCCGCAGCAGGCTAAAATTTTGCACCA
AAAATTCAAATAAACACACGTCGCGCCAAAAGACACCTCACGTTCCCGAGTCCGTGCACCGTCGA
TGAGAAAGATCTGGTCGTCACGGAAAGACCGAGATAAGCGCAAGCTGATGGGCAGCGGCGCCGGG
TACGCTGCCACGGTGTCGCTCGCCGCGTCCGCCGACGACGCGTCG
Found at i:72661 original size:19 final size:20
Alignment explanation
Indices: 72630--72707 Score: 119
Period size: 19 Copynumber: 4.0 Consensus size: 20
72620 GGCGCCCTAA
72630 ACCA-CGCCAAACCACCGCC
1 ACCACCGCCAAACCACCGCC
72649 ACCACCGCC-AACCACCGCC
1 ACCACCGCCAAACCACCGCC
72668 ACCACCGCC-AACCACCGCC
1 ACCACCGCCAAACCACCGCC
72687 AACCACCGCCAAACCA-CGCC
1 -ACCACCGCCAAACCACCGCC
72707 A
1 A
72708 ATGCCACGGC
Statistics
Matches: 56, Mismatches: 0, Indels: 6
0.90 0.00 0.10
Matches are distributed among these distances:
19 34 0.61
20 17 0.30
21 5 0.09
ACGTcount: A:0.31, C:0.59, G:0.10, T:0.00
Consensus pattern (20 bp):
ACCACCGCCAAACCACCGCC
Left flanking sequence: Indices 72130 -- 72629
AGTCAGGGCCGGCTGACGGGACCACCGCGGGCCCGGTGGCGTGGTGGTGCGGTGGGCCGCCTCGC
CTCGGGCTCTCGCCGCCAGCGGTGCCAGGGCGCCCTCGATGGCGCCGCCGGCCACTCGCGTTCCA
GTCGAATCCGGGTTCCGACACCCTGATTATTTTTTGGAGGCGACAGCGGCTCGACGCACGACTTG
CCAGGGAAGGCTAATCGACGATGGAATTCTGGCGTCGGAATGTGGAGCCAAGCTCGTGACTGGAG
GAGGCAAGGCGTACCAGCGTACCAGCGTGCCACACGCAACCACACGCAACCACATAGCCGTCCCA
TAACCAGCCCAGAACCTACCCCACCCGTAGCCATAACCCACGCGTCACCACGCACTCGTCTCCTC
CACCCTACACACAACCCACCCACGCACTTGTCATCCACGCACCCGTCACCCACCTTACCTACGCC
AGCGTCACCCACCTGACCGGCGCCTGGTGTCCCCGGGCGCCCTAA
Right flanking sequence: Indices 72708 -- 73207
ATGCCACGGCCGCGAACACTTCCGTAACCCCTACACTCCCTACGTAACCGCGTAAACCACCACCC
ACATTCACACCACCTCACCACCTCACCAAATCACCCACTCTACCACTCTACCAATCTACCACTCT
ACCAATCTACCACTCTACCCACACCACCCACACCACCCATTCTCCCACTCTACCACCCTTACCTA
CACCCCACACCCCTCACCCACCACCACCACCACCACCCCTCACCACCAATTGACCGATCCCCCTG
ACGGGCTCGTTCCCCCTCCTCGCGGGCTCCAAAAAAATATCCGCAGCAGGCTAAAATTTTGCACC
AAAAATTCAAATAAACACACGTCGCGCCAAAAGACACCTCACGTTCCCGAGTCCGTGCACCGTCG
ATGAGAAAGATCTGGTCGTCACGGAAAGACCGAGATAAGCGCAAGCTGATGGGCAGCGGCGCCGG
GTACGCTGCCACGGTGTCGCTCGCCGCGTCCGCCGACGACGCGTC
Found at i:72662 original size:29 final size:30
Alignment explanation
Indices: 72629--72707 Score: 121
Period size: 29 Copynumber: 2.7 Consensus size: 30
72619 GGGCGCCCTA
72629 AACCA-CGCCAAACCACCGCCACCACCGCC
1 AACCACCGCCAAACCACCGCCACCACCGCC
72658 AACCACCGCC--ACCACCGCCAACCACCGCC
1 AACCACCGCCAAACCACCGCC-ACCACCGCC
72687 AACCACCGCCAAACCA-CGCCA
1 AACCACCGCCAAACCACCGCCA
72708 ATGCCACGGC
Statistics
Matches: 46, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
28 9 0.20
29 25 0.54
30 8 0.17
31 4 0.09
ACGTcount: A:0.32, C:0.58, G:0.10, T:0.00
Consensus pattern (30 bp):
AACCACCGCCAAACCACCGCCACCACCGCC
Left flanking sequence: Indices 72129 -- 72628
GAGTCAGGGCCGGCTGACGGGACCACCGCGGGCCCGGTGGCGTGGTGGTGCGGTGGGCCGCCTCG
CCTCGGGCTCTCGCCGCCAGCGGTGCCAGGGCGCCCTCGATGGCGCCGCCGGCCACTCGCGTTCC
AGTCGAATCCGGGTTCCGACACCCTGATTATTTTTTGGAGGCGACAGCGGCTCGACGCACGACTT
GCCAGGGAAGGCTAATCGACGATGGAATTCTGGCGTCGGAATGTGGAGCCAAGCTCGTGACTGGA
GGAGGCAAGGCGTACCAGCGTACCAGCGTGCCACACGCAACCACACGCAACCACATAGCCGTCCC
ATAACCAGCCCAGAACCTACCCCACCCGTAGCCATAACCCACGCGTCACCACGCACTCGTCTCCT
CCACCCTACACACAACCCACCCACGCACTTGTCATCCACGCACCCGTCACCCACCTTACCTACGC
CAGCGTCACCCACCTGACCGGCGCCTGGTGTCCCCGGGCGCCCTA
Right flanking sequence: Indices 72708 -- 73207
ATGCCACGGCCGCGAACACTTCCGTAACCCCTACACTCCCTACGTAACCGCGTAAACCACCACCC
ACATTCACACCACCTCACCACCTCACCAAATCACCCACTCTACCACTCTACCAATCTACCACTCT
ACCAATCTACCACTCTACCCACACCACCCACACCACCCATTCTCCCACTCTACCACCCTTACCTA
CACCCCACACCCCTCACCCACCACCACCACCACCACCCCTCACCACCAATTGACCGATCCCCCTG
ACGGGCTCGTTCCCCCTCCTCGCGGGCTCCAAAAAAATATCCGCAGCAGGCTAAAATTTTGCACC
AAAAATTCAAATAAACACACGTCGCGCCAAAAGACACCTCACGTTCCCGAGTCCGTGCACCGTCG
ATGAGAAAGATCTGGTCGTCACGGAAAGACCGAGATAAGCGCAAGCTGATGGGCAGCGGCGCCGG
GTACGCTGCCACGGTGTCGCTCGCCGCGTCCGCCGACGACGCGTC
Found at i:72818 original size:8 final size:8
Alignment explanation
Indices: 72807--72856 Score: 82
Period size: 8 Copynumber: 6.2 Consensus size: 8
72797 ACCAAATCAC
72807 CCACTCTA
1 CCACTCTA
72815 CCACTCTA
1 CCACTCTA
*
72823 CCAATCTA
1 CCACTCTA
72831 CCACTCTA
1 CCACTCTA
*
72839 CCAATCTA
1 CCACTCTA
72847 CCACTCTA
1 CCACTCTA
72855 CC
1 CC
72857 CACACCACCC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
8 38 1.00
ACGTcount: A:0.28, C:0.48, G:0.00, T:0.24
Consensus pattern (8 bp):
CCACTCTA
Left flanking sequence: Indices 72307 -- 72806
GGCTCGACGCACGACTTGCCAGGGAAGGCTAATCGACGATGGAATTCTGGCGTCGGAATGTGGAG
CCAAGCTCGTGACTGGAGGAGGCAAGGCGTACCAGCGTACCAGCGTGCCACACGCAACCACACGC
AACCACATAGCCGTCCCATAACCAGCCCAGAACCTACCCCACCCGTAGCCATAACCCACGCGTCA
CCACGCACTCGTCTCCTCCACCCTACACACAACCCACCCACGCACTTGTCATCCACGCACCCGTC
ACCCACCTTACCTACGCCAGCGTCACCCACCTGACCGGCGCCTGGTGTCCCCGGGCGCCCTAAAC
CACGCCAAACCACCGCCACCACCGCCAACCACCGCCACCACCGCCAACCACCGCCAACCACCGCC
AAACCACGCCAATGCCACGGCCGCGAACACTTCCGTAACCCCTACACTCCCTACGTAACCGCGTA
AACCACCACCCACATTCACACCACCTCACCACCTCACCAAATCAC
Right flanking sequence: Indices 72857 -- 73356
CACACCACCCACACCACCCATTCTCCCACTCTACCACCCTTACCTACACCCCACACCCCTCACCC
ACCACCACCACCACCACCCCTCACCACCAATTGACCGATCCCCCTGACGGGCTCGTTCCCCCTCC
TCGCGGGCTCCAAAAAAATATCCGCAGCAGGCTAAAATTTTGCACCAAAAATTCAAATAAACACA
CGTCGCGCCAAAAGACACCTCACGTTCCCGAGTCCGTGCACCGTCGATGAGAAAGATCTGGTCGT
CACGGAAAGACCGAGATAAGCGCAAGCTGATGGGCAGCGGCGCCGGGTACGCTGCCACGGTGTCG
CTCGCCGCGTCCGCCGACGACGCGTCGCACCCCCGCGACCTCGCGGGTGCACCCGCCACTCCCCA
GGTGGACCACATCGCGCGGTTGGTGCGTCCGGAGTGGGACCTGACCCCGGTCAAGCACCAGTGGC
TCAACGTGGCCCCCGGCGCCCACGCCGGCGACCTCGACGCCGCCG
Found at i:72828 original size:24 final size:25
Alignment explanation
Indices: 72801--72859 Score: 86
Period size: 24 Copynumber: 2.4 Consensus size: 25
72791 CACCTCACCA
*
72801 AATC-ACCCACTCTACCACTCTACC
1 AATCTACCCACTCTACCAATCTACC
72825 AATCTA-CCACTCTACCAATCTACC
1 AATCTACCCACTCTACCAATCTACC
*
72849 ACTCTACCCAC
1 AATCTACCCAC
72860 ACCACCCACA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
24 26 0.84
25 5 0.16
ACGTcount: A:0.31, C:0.47, G:0.00, T:0.22
Consensus pattern (25 bp):
AATCTACCCACTCTACCAATCTACC
Left flanking sequence: Indices 72301 -- 72800
GACAGCGGCTCGACGCACGACTTGCCAGGGAAGGCTAATCGACGATGGAATTCTGGCGTCGGAAT
GTGGAGCCAAGCTCGTGACTGGAGGAGGCAAGGCGTACCAGCGTACCAGCGTGCCACACGCAACC
ACACGCAACCACATAGCCGTCCCATAACCAGCCCAGAACCTACCCCACCCGTAGCCATAACCCAC
GCGTCACCACGCACTCGTCTCCTCCACCCTACACACAACCCACCCACGCACTTGTCATCCACGCA
CCCGTCACCCACCTTACCTACGCCAGCGTCACCCACCTGACCGGCGCCTGGTGTCCCCGGGCGCC
CTAAACCACGCCAAACCACCGCCACCACCGCCAACCACCGCCACCACCGCCAACCACCGCCAACC
ACCGCCAAACCACGCCAATGCCACGGCCGCGAACACTTCCGTAACCCCTACACTCCCTACGTAAC
CGCGTAAACCACCACCCACATTCACACCACCTCACCACCTCACCA
Right flanking sequence: Indices 72860 -- 73359
ACCACCCACACCACCCATTCTCCCACTCTACCACCCTTACCTACACCCCACACCCCTCACCCACC
ACCACCACCACCACCCCTCACCACCAATTGACCGATCCCCCTGACGGGCTCGTTCCCCCTCCTCG
CGGGCTCCAAAAAAATATCCGCAGCAGGCTAAAATTTTGCACCAAAAATTCAAATAAACACACGT
CGCGCCAAAAGACACCTCACGTTCCCGAGTCCGTGCACCGTCGATGAGAAAGATCTGGTCGTCAC
GGAAAGACCGAGATAAGCGCAAGCTGATGGGCAGCGGCGCCGGGTACGCTGCCACGGTGTCGCTC
GCCGCGTCCGCCGACGACGCGTCGCACCCCCGCGACCTCGCGGGTGCACCCGCCACTCCCCAGGT
GGACCACATCGCGCGGTTGGTGCGTCCGGAGTGGGACCTGACCCCGGTCAAGCACCAGTGGCTCA
ACGTGGCCCCCGGCGCCCACGCCGGCGACCTCGACGCCGCCGCCC
Found at i:72832 original size:16 final size:16
Alignment explanation
Indices: 72811--72856 Score: 92
Period size: 16 Copynumber: 2.9 Consensus size: 16
72801 AATCACCCAC
72811 TCTACCACTCTACCAA
1 TCTACCACTCTACCAA
72827 TCTACCACTCTACCAA
1 TCTACCACTCTACCAA
72843 TCTACCACTCTACC
1 TCTACCACTCTACC
72857 CACACCACCC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.28, C:0.46, G:0.00, T:0.26
Consensus pattern (16 bp):
TCTACCACTCTACCAA
Left flanking sequence: Indices 72311 -- 72810
CGACGCACGACTTGCCAGGGAAGGCTAATCGACGATGGAATTCTGGCGTCGGAATGTGGAGCCAA
GCTCGTGACTGGAGGAGGCAAGGCGTACCAGCGTACCAGCGTGCCACACGCAACCACACGCAACC
ACATAGCCGTCCCATAACCAGCCCAGAACCTACCCCACCCGTAGCCATAACCCACGCGTCACCAC
GCACTCGTCTCCTCCACCCTACACACAACCCACCCACGCACTTGTCATCCACGCACCCGTCACCC
ACCTTACCTACGCCAGCGTCACCCACCTGACCGGCGCCTGGTGTCCCCGGGCGCCCTAAACCACG
CCAAACCACCGCCACCACCGCCAACCACCGCCACCACCGCCAACCACCGCCAACCACCGCCAAAC
CACGCCAATGCCACGGCCGCGAACACTTCCGTAACCCCTACACTCCCTACGTAACCGCGTAAACC
ACCACCCACATTCACACCACCTCACCACCTCACCAAATCACCCAC
Right flanking sequence: Indices 72857 -- 73356
CACACCACCCACACCACCCATTCTCCCACTCTACCACCCTTACCTACACCCCACACCCCTCACCC
ACCACCACCACCACCACCCCTCACCACCAATTGACCGATCCCCCTGACGGGCTCGTTCCCCCTCC
TCGCGGGCTCCAAAAAAATATCCGCAGCAGGCTAAAATTTTGCACCAAAAATTCAAATAAACACA
CGTCGCGCCAAAAGACACCTCACGTTCCCGAGTCCGTGCACCGTCGATGAGAAAGATCTGGTCGT
CACGGAAAGACCGAGATAAGCGCAAGCTGATGGGCAGCGGCGCCGGGTACGCTGCCACGGTGTCG
CTCGCCGCGTCCGCCGACGACGCGTCGCACCCCCGCGACCTCGCGGGTGCACCCGCCACTCCCCA
GGTGGACCACATCGCGCGGTTGGTGCGTCCGGAGTGGGACCTGACCCCGGTCAAGCACCAGTGGC
TCAACGTGGCCCCCGGCGCCCACGCCGGCGACCTCGACGCCGCCG
Found at i:73502 original size:12 final size:12
Alignment explanation
Indices: 73487--73539 Score: 70
Period size: 12 Copynumber: 4.4 Consensus size: 12
73477 TCGACGACGC
*
73487 GGCGCTGGCCCA
1 GGCGCTGACCCA
73499 GGCGCTGACCCA
1 GGCGCTGACCCA
* *
73511 GGCGCTGACACT
1 GGCGCTGACCCA
*
73523 GGCACTGACCCA
1 GGCGCTGACCCA
73535 GGCGC
1 GGCGC
73540 CGCTGCTGAC
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.15, C:0.40, G:0.36, T:0.09
Consensus pattern (12 bp):
GGCGCTGACCCA
Left flanking sequence: Indices 72987 -- 73486
TCGCGGGCTCCAAAAAAATATCCGCAGCAGGCTAAAATTTTGCACCAAAAATTCAAATAAACACA
CGTCGCGCCAAAAGACACCTCACGTTCCCGAGTCCGTGCACCGTCGATGAGAAAGATCTGGTCGT
CACGGAAAGACCGAGATAAGCGCAAGCTGATGGGCAGCGGCGCCGGGTACGCTGCCACGGTGTCG
CTCGCCGCGTCCGCCGACGACGCGTCGCACCCCCGCGACCTCGCGGGTGCACCCGCCACTCCCCA
GGTGGACCACATCGCGCGGTTGGTGCGTCCGGAGTGGGACCTGACCCCGGTCAAGCACCAGTGGC
TCAACGTGGCCCCCGGCGCCCACGCCGGCGACCTCGACGCCGCCGCCCGCACCTATCGGGCCGAG
TTGCGTGGCTCGCACCTCTATTTGTACAAAACCAGCCAGTTCAAGCGGTTCCTGGTGGACGACCC
GCCGATGACGCCGATGACGCCGAAAACCGACAAGTTCGACGACGC
Right flanking sequence: Indices 73540 -- 74039
CGCTGCTGACAGCGCCGCTGGCGTTCGGCTACGGGTCGTACGCAGCACTGTCCACAGGCACCCTC
GTCAGCGGCGGCAGCCTATACGGCGGGCGCAACCACCTGACCGCCACCTTGGACGAGGACCCGCT
CGCCGCCGCCGCCACCGGGCCCCCCACCGTCACCTACTTCCAGACGTCCCGCCACCCCGATCTCA
ACTACAACGCCGACACCGGCAAGTTTGGCCCGCTGCCGGTGGACCTGCTCGTGCACTTCATGCTC
TTTGCCGGCCCCGACGACGCCAAGGCGGTGTCGTCGGTGGTGGCGATCCTCCCGCTCTTCCCGCA
GTTCGAGGTGGTGGTGCGGCTCGTGAGCGACTACTTGCAGGCGATCGCCGACGGCAAGCTCGGCA
CGGTGGAGCGGCACCCCGTGGTGGACCGGGTGTTGCAGTTGGTCAACCACTTGGAGAGCAACTTC
ATGGGGTTCTTGCTCAAGCAGGACACGGCGCTGGCGATCCTCAAG
Found at i:78956 original size:34 final size:37
Alignment explanation
Indices: 78874--78983 Score: 118
Period size: 38 Copynumber: 3.0 Consensus size: 37
78864 TCATTTGACG
* * *
78874 TTACTATGTCATACCCGTACAATCAAATAGAGTTTTT
1 TTACCATGTCATACTCATACAATCAAATAGAGTTTTT
78911 TGTACCATGTCATACTCATAC-ATC-AATAGAG-TTTT
1 T-TACCATGTCATACTCATACAATCAAATAGAGTTTTT
* * *
78946 TTACCATGTCATACTAACATACACTCAAACAGAATTTT
1 TTACCATGTCATACT--CATACAATCAAATAGAGTTTT
78984 CTTGGTGTCT
Statistics
Matches: 61, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
34 14 0.23
35 5 0.08
36 12 0.20
37 6 0.10
38 21 0.34
39 3 0.05
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (37 bp):
TTACCATGTCATACTCATACAATCAAATAGAGTTTTT
Left flanking sequence: Indices 78374 -- 78873
GGGCGGCACCATTGCCACCACCACGGGCACCCCGGTGACCCCCAGCTATCCCTCGACGATTATCG
GAACCCCGGTGCTCAACCACGCGCCGCTCGAGAAGATCGACGACAACGGCGAGTACGAGGATGAC
ACTGCCTCGGTGACGCTGGCCGACGAGGCGGTGCCGCATCCGCACCACGGCCACCAGCCGGCGGA
GGGTGCCAGCGAGCACGAGGGCGTGGTCAGCGGCGACTCGTCGCGCCCGCCTGTCGACGCGCTGG
GTCTCCCGACACCCACGATAGACGATGACCACGAGAAGTAGTTTTATGCGACGTATTTTTATTAC
ACAGAGTTACGAATGGCGTAGGAGGGGGTTGGCTGTCGATCCATTTTACGATGCAGCGAAGGTTC
GGTGGCATTGTCACAGAAGGGGTACATACGAATGCAGACAAAAGGGTGGTGTGGGTGAGACGCGG
TGGTGGCTGTTGTCTGCTTGTGGTAATGAATAGATTCATTTGACG
Right flanking sequence: Indices 78984 -- 79483
CTTGGTGTCTGGGAACGTAAACTTCACTATTTTCTACTGGGTATTCACACTATTTTCTCTACTTA
TTCACACTATTCCACTTCGCATTCACATTCACACTGTTCTCCACTACGCACTGTTCTCCACTACG
CACTGGTTTCCACTTCTCTCTCATTTCAACGTCTGTATTAGTAATCTATTAAATATGCTAGTACT
GGGTGTGGAAGAACGGGTGTGCCATTGCCTCCTGCGCCGTGGGCCGCAACTGGTGGTCGTAGGTC
AAGAGCTTGTCGATTAGATCCACCACCTCGGGCACCGCAAGCGGGGTGTCCTTCAGAATGAACTG
CGACCACGGCTTGCGCGGATAAGTTCCGAGAATGTCGTCGTATTCGGGCGACAACTTGAGCCCGT
ATTTGTTGACGTAGGCCATCAAGTCGGCCGTGCCCAACACCTTGGCGATCTGCACCAACTGGTCG
TTGTTCAGGTCGCCGCGGAAAAACGGCTCCTTGTTGAGGACAATC
Found at i:79035 original size:23 final size:22
Alignment explanation
Indices: 79008--79059 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
78998 ACGTAAACTT
**
79008 CACTATTTTCTACTGGGTATTCA
1 CACTATTTTCT-CTACGTATTCA
*
79031 CACTATTTTCTCTACTTATTCA
1 CACTATTTTCTCTACGTATTCA
79053 CACTATT
1 CACTATT
79060 CCACTTCGCA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 15 0.58
23 11 0.42
ACGTcount: A:0.23, C:0.25, G:0.06, T:0.46
Consensus pattern (22 bp):
CACTATTTTCTCTACGTATTCA
Left flanking sequence: Indices 78508 -- 79007
CCTCGGTGACGCTGGCCGACGAGGCGGTGCCGCATCCGCACCACGGCCACCAGCCGGCGGAGGGT
GCCAGCGAGCACGAGGGCGTGGTCAGCGGCGACTCGTCGCGCCCGCCTGTCGACGCGCTGGGTCT
CCCGACACCCACGATAGACGATGACCACGAGAAGTAGTTTTATGCGACGTATTTTTATTACACAG
AGTTACGAATGGCGTAGGAGGGGGTTGGCTGTCGATCCATTTTACGATGCAGCGAAGGTTCGGTG
GCATTGTCACAGAAGGGGTACATACGAATGCAGACAAAAGGGTGGTGTGGGTGAGACGCGGTGGT
GGCTGTTGTCTGCTTGTGGTAATGAATAGATTCATTTGACGTTACTATGTCATACCCGTACAATC
AAATAGAGTTTTTTGTACCATGTCATACTCATACATCAATAGAGTTTTTTACCATGTCATACTAA
CATACACTCAAACAGAATTTTCTTGGTGTCTGGGAACGTAAACTT
Right flanking sequence: Indices 79060 -- 79559
CCACTTCGCATTCACATTCACACTGTTCTCCACTACGCACTGTTCTCCACTACGCACTGGTTTCC
ACTTCTCTCTCATTTCAACGTCTGTATTAGTAATCTATTAAATATGCTAGTACTGGGTGTGGAAG
AACGGGTGTGCCATTGCCTCCTGCGCCGTGGGCCGCAACTGGTGGTCGTAGGTCAAGAGCTTGTC
GATTAGATCCACCACCTCGGGCACCGCAAGCGGGGTGTCCTTCAGAATGAACTGCGACCACGGCT
TGCGCGGATAAGTTCCGAGAATGTCGTCGTATTCGGGCGACAACTTGAGCCCGTATTTGTTGACG
TAGGCCATCAAGTCGGCCGTGCCCAACACCTTGGCGATCTGCACCAACTGGTCGTTGTTCAGGTC
GCCGCGGAAAAACGGCTCCTTGTTGAGGACAATCGCCGCCAACATACACCCCACCAGCCACAAGT
CAAGCAGGTAGTCGTACTGCTGGAGGTTGACCAACAACTCGGGGC
Found at i:79102 original size:17 final size:17
Alignment explanation
Indices: 79080--79127 Score: 80
Period size: 17 Copynumber: 2.8 Consensus size: 17
79070 TTCACATTCA
79080 CACTGTTCTCCACTACG
1 CACTGTTCTCCACTACG
79097 CACTGTTCTCCACTACG
1 CACTGTTCTCCACTACG
79114 CACTGGTT-TCCACT
1 CACT-GTTCTCCACT
79128 TCTCTCTCAT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
17 27 0.90
18 3 0.10
ACGTcount: A:0.17, C:0.40, G:0.12, T:0.31
Consensus pattern (17 bp):
CACTGTTCTCCACTACG
Left flanking sequence: Indices 78580 -- 79079
AGCACGAGGGCGTGGTCAGCGGCGACTCGTCGCGCCCGCCTGTCGACGCGCTGGGTCTCCCGACA
CCCACGATAGACGATGACCACGAGAAGTAGTTTTATGCGACGTATTTTTATTACACAGAGTTACG
AATGGCGTAGGAGGGGGTTGGCTGTCGATCCATTTTACGATGCAGCGAAGGTTCGGTGGCATTGT
CACAGAAGGGGTACATACGAATGCAGACAAAAGGGTGGTGTGGGTGAGACGCGGTGGTGGCTGTT
GTCTGCTTGTGGTAATGAATAGATTCATTTGACGTTACTATGTCATACCCGTACAATCAAATAGA
GTTTTTTGTACCATGTCATACTCATACATCAATAGAGTTTTTTACCATGTCATACTAACATACAC
TCAAACAGAATTTTCTTGGTGTCTGGGAACGTAAACTTCACTATTTTCTACTGGGTATTCACACT
ATTTTCTCTACTTATTCACACTATTCCACTTCGCATTCACATTCA
Right flanking sequence: Indices 79128 -- 79627
TCTCTCTCATTTCAACGTCTGTATTAGTAATCTATTAAATATGCTAGTACTGGGTGTGGAAGAAC
GGGTGTGCCATTGCCTCCTGCGCCGTGGGCCGCAACTGGTGGTCGTAGGTCAAGAGCTTGTCGAT
TAGATCCACCACCTCGGGCACCGCAAGCGGGGTGTCCTTCAGAATGAACTGCGACCACGGCTTGC
GCGGATAAGTTCCGAGAATGTCGTCGTATTCGGGCGACAACTTGAGCCCGTATTTGTTGACGTAG
GCCATCAAGTCGGCCGTGCCCAACACCTTGGCGATCTGCACCAACTGGTCGTTGTTCAGGTCGCC
GCGGAAAAACGGCTCCTTGTTGAGGACAATCGCCGCCAACATACACCCCACCAGCCACAAGTCAA
GCAGGTAGTCGTACTGCTGGAGGTTGACCAACAACTCGGGGCCCTTGTGGTACCTCAGCGCCACC
CGCACGTTGTAGTCCATCCCCTTGTGGTAAAACTCGGCAAGCCCC
Found at i:80553 original size:13 final size:13
Alignment explanation
Indices: 80523--80561 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
80513 TGTGGTGGGG
**
80523 TTCGGAGTGTCGT
1 TTCGGAGTACCGT
*
80536 GTCGGAGTACCGT
1 TTCGGAGTACCGT
80549 TTCGGAGTACCGT
1 TTCGGAGTACCGT
80562 CGGCTGATCG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.13, C:0.21, G:0.36, T:0.31
Consensus pattern (13 bp):
TTCGGAGTACCGT
Left flanking sequence: Indices 80023 -- 80522
CTTGGCGACGATTTCGTAGCTGCCAATGTGGCCCCACTCGATTTTGTGGTTTTCGTAGTCCCAGT
AGCTCTGGGGCTTGTTGGCGTTGGCGTCGGCATACACCCGTGCCGTCAGGTATACCCGGGCGCTC
ACCATCAGTTTGTTGTAAGACATAGCCCTGTGTTCTCAAATCAGTCGCGTTATCGATGAGGTGCG
GCTGCAGGGCGATGCCGCGGGTAACTCGGGGAAACTGGGGAGCAGCGGAGGTTACGGGGCTCGGG
GGGCTGGGGTGGGTGGTTGCAACTGCAGTTGGAGCGCTGGTGGTGGGTTTTTGCTGTTTTGGGCG
GTGGTTGCGGGGGTAGATCGGTGGTGGTGGTTACGAGACGACGGTTGTAAATTGCCTAGAGCGGC
AAAAGGGCCCGATTGGGACGATACGGTGAGTTACGACGCGGAGCGTGGAGAGGTGGTGGGAATTG
GAGACGAAAACGAGGGGTTACGTAGTGTTTGTTGGTGTGGTGGGG
Right flanking sequence: Indices 80562 -- 81061
CGGCTGATCGTCAATCGGACTACCACGGCAGGTGCGATCAGAATGCGAGCAGGGATGAAATTTAC
CCCTGGGACAATGTTTACGGCGGGTGGAGGCTACGGTGTTTCGTTTCGCTCGTCGTCACGGATGA
AACGGGTGGGCTTGGCTCAAAATGGGGTGATCAGCGTACAAGACACAAATGGCGGTTGCGGGCAC
TAAAAGGATGCGCAACACAGGCTGGGATCGTGTAGACTTACGATGTAGAGAAAAGATGGCTATAG
AAGTAGGCCAAGAAGTTTAGTCCCATTAAGTCGGGCTATGTGCGCTTATGCCCAGACTATTTCAG
TGGGCCTCAGATGAAACTGTGGTGGAGGTGGTGAATTCTAGCTGGGAACCGGTGACACGTCAATT
CAGTGAGCATTGGTACTATTATCCCACACTAGATAAATCAATCCTACCTTGATCGATGAGAGGGG
ACTTGATTTACCCAAACAATACAATCGCGTAGTGGCATGATCTAG
Found at i:84988 original size:23 final size:23
Alignment explanation
Indices: 84951--85011 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
84941 GCGGTGGGGG
*
84951 TGGGGA-AGTGGTGGTAGGATTT
1 TGGGGATAGTGGTGGTAGGATTC
*
84973 TGGGGATAGTGTTGGTAGGATTC
1 TGGGGATAGTGGTGGTAGGATTC
84996 TGGGG-TAGTGGTGGTA
1 TGGGGATAGTGGTGGTA
85012 ACAGCCAGTG
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
22 16 0.46
23 19 0.54
ACGTcount: A:0.16, C:0.02, G:0.49, T:0.33
Consensus pattern (23 bp):
TGGGGATAGTGGTGGTAGGATTC
Left flanking sequence: Indices 84451 -- 84950
CATCGCCAACCCCTCGTCGTAGGAAATCATCCGCTTTTGCTGGTGGCCTCCGTAGGGGTTGAACT
CCTCCTCGGGGTTGTGCTCCAAGTCCGTCTCCTCGTTGGACCGCAAGTCGCACTTGAGCGCCACC
AACACCAACTTGACGCCATCGCAGTGGTCGGTGATCTCGCCCACCCACTTCAGCTGGACGTTCTC
CAACGAGTCGGGAGAGTCGATGGAGAAACAGAGCATGATGCAGTGGGTGTCCAGGTACGACAACG
ACCGCAACCGGTCGAATTCTTCCTGGCCAGCGGTGTCCCATAACAGCAACTGGATCTGCTTACCG
TCGATGAAAATGTCGTGGACATAGTTTTCAAACACGGTGGGCTCGTACACCTGGGGGAAGTAGCC
CCGGGTGAACACGTTCAAAAGGGAGGTTTTACCACAGGCACCATCGCCAAGAATGACGATCTTGC
GCTGGACTAAACGTTAGTATTACAAATGGAAAGGAGCGGTGGGGG
Right flanking sequence: Indices 85012 -- 85511
ACAGCCAGTGGCTTTGTAGTAGATCTCGATTTTGTGTCTCTTATCCTCTCTCAGGTGATTCGGAA
CACTTTTTGATTACACCCTCTGATGGTGGGAGGAGGGAGTAACTGGAGGAGGGAGGGTATCGAAG
AAAGATATCAGAGGGAACGTATCGGAACATATTGGAGGTAAAAGTATCAACGATGACCCAAGGTA
CGGATCCAGGTACCAGGCACCACGACAGTAACGCAAGGTCCGGAACGCCCAGCGCAGCCCCGACG
CATCGCCTCTCCATTTTGCCTCCCAAACCCTCCAGCTAAGCCAAACATAACCAACACCAGTCTCT
CCAGGACCAACCTCTCATGTCACACCACCATGCCATCGCTCATCCTCCACGGTGGCCTATAGCGC
TCAGCGCTGCTGGCGCGGAATACCCGGTCCAGCAACCCCAGCACAGGCCCGTCCCGTCCGCAGTG
GCCATATACTTACTCGTTTTCGGTGCGCTGCCACAGATAGCCATT
Found at i:93406 original size:12 final size:12
Alignment explanation
Indices: 93389--93426 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
93379 ACGTTGGGGA
93389 CCTTGGCAGCAC
1 CCTTGGCAGCAC
93401 CCTTGGCAGCAC
1 CCTTGGCAGCAC
93413 CCTTGGCAGC-C
1 CCTTGGCAGCAC
93424 CCT
1 CCT
93427 GTGAGGGCTG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 4 0.15
12 22 0.85
ACGTcount: A:0.13, C:0.45, G:0.24, T:0.18
Consensus pattern (12 bp):
CCTTGGCAGCAC
Left flanking sequence: Indices 92889 -- 93388
CGCCTGACAACTGGCGGTTGACGCATTCCCAGCCCACACCGATGGTGCCAATGTCGCTCGGTACA
TGCACTCAGCCACCCCCCAACATGCCCGATGATGTCATGACAGAAGAATGGGAGTTACGCAGGCC
ATCAGCGAATAGCGGGGGATGTTCGTTGATTTGTCGCCGTGCCTGGCCGCGTGACAGGTAGCATT
GTTGTGGCAACGCCGAGAGCGACGGTCCTTTGTTCCACCGGGGCGCTGCTGGTTGTCCATGCGAG
GAGACGTATGTAATTTAAGCACGGTGGTCGGCCCCAGTAATTAAGGAGCCCACCCCCTGTTCCAG
GTGTCAGAACTCAGTCACTCACAAGACCGCTTTCGCCCCACGGCCCTGTTTAGTTGGCACACGTA
ACTGCTCCGTTTTCCTCAGCCTGCGCTATTTTTAACGCGACCCCCCACATTACCCGACAACGTTC
AGGTCCGTAGCAAAGGTAAACACGCAAGCAACACCACGTTGGGGA
Right flanking sequence: Indices 93427 -- 93926
GTGAGGGCTGCTCAGCAAGCCAGGCTTGGCCCCTACATCAAGAAATTTAGCATTTGCTTGGCTGC
ACTAGCACGCCAAATCGCACTTTCGCTAGTCATTTTTTGGCACGGAATCAGGAGATTGCAAGGCG
CTAGCGGCGCATCTAAGCCCTGGAAAGCATTCGATCCCCTCTTGTAGCCTTAGTTCTCGCCACAA
CAATCCTACACCCTCTTTTCCACCCGTATTCCACCGGTCCCCCCAGCCAACCCGGATCAAAGCGC
AGCAGACTCAAAAGAGGCTGTGACGCGTTTCCGAGAAAAAAAATACAAATTCGTGCCACTTGGTC
AACGAGACGTCTATCCGGAAATGAAGTGGCACTTATGGTTAGCGCTCACGGTGCAGATGTACTTG
GCATCCACCGTGGCCGCCGTCAAATTCATTCGGCTGTCGTCATTGTTAACCTGTATGGATGATTC
CCAGTTCACGGCCACCAACTTCGCCGTCAAGTTCTTCCCCGAAAA
Found at i:106296 original size:18 final size:18
Alignment explanation
Indices: 106273--106317 Score: 90
Period size: 18 Copynumber: 2.5 Consensus size: 18
106263 CAACGCAAAT
106273 CAGTCATAACAACGTAAG
1 CAGTCATAACAACGTAAG
106291 CAGTCATAACAACGTAAG
1 CAGTCATAACAACGTAAG
106309 CAGTCATAA
1 CAGTCATAA
106318 ACGACGACCC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.44, C:0.22, G:0.16, T:0.18
Consensus pattern (18 bp):
CAGTCATAACAACGTAAG
Left flanking sequence: Indices 105773 -- 106272
CATCGATGCGATACGGCTCGTGCCAGAAGATGCCAAGAGTCGGGGTTGTCAAGGTAGCCCCACCG
GACATCGCCCGAGGGCAATCATGACATGCCGCGTGGTGGGGCGGAAATAGCCTGTAGCACATGTT
TGCAAACAAACAGGAATAGTATATTCATAACCCCGGGAAACGCAGGTGCAATTGACTTTGAAGGC
GACATGCAGTGACAGCAAATGCAGTCCGTGAATCGACAGACACTGAACCCTGCGTGCATTGCCAA
CCTAGTTTGTGGGCTCCGTCCGATTGGGTATCGCAGTGTCCCCAGTTTATTCTCGTAACCTTGTT
TCGCCGTTTCCGACCTGACTCGGGTAGGCACATTTCCGAAACCAAACAAGGTTTGGTCGGAGTTA
CTCCGGTTGTGGTGTCGGGCATGCGTAGTGGGCCAACATCTGCCAAAGCAACGCCTCTGCCTAAG
CCCCATAGGCCAGTGCTCTTACGACCATCTGTAAGCAACGCAAAT
Right flanking sequence: Indices 106318 -- 106817
ACGACGACCCAGTCATAAACAACGACCCAGTCGTAAACAACGCAATCAGATAAACAACGAAAATC
AGTCAAACAACGCAAATCAGTCAAACGCAAATCAGTAACCAACGCAAATCAGTCAAACAACGTAA
ATCAGTCAAATCAGTCATAAACGAACCTGTCATAAACAACAACCCAGTCATAAACAACAACCTAG
TTATAAACAACAACCCAAACGCCCTTATCTGCCTATTCTCTACATCTCATTCACTACTTCTGGGC
CGTGGCCCGTGTTTATTTGCCCGAGGACTCGGTGATGGTGCCCAAATTCGAGTTGGACGACACCA
GCTCGGGCTGGCTATATGCAAAGGTGGACTTGGGGTCCAAAGTAAACGGAAGCGCCGGCATGTCT
TGGCTGCGCCACAGGCCCGACTCTTCATCCTCCTCGGTCACCAGGGCAAACAGACCCTGCAGACG
TACCAGCGGCGCCCGCAGCACCAGCCGCAGCCGCAGCGCCTCCGG
Found at i:106330 original size:18 final size:18
Alignment explanation
Indices: 106273--106359 Score: 88
Period size: 18 Copynumber: 4.8 Consensus size: 18
106263 CAACGCAAAT
**
106273 CAGTCAT-AACAACGTAAG
1 CAGTCATAAACAACG-ACC
**
106291 CAGTCAT-AACAACGTAAG
1 CAGTCATAAACAACG-ACC
*
106309 CAGTCATAAACGACGACC
1 CAGTCATAAACAACGACC
106327 CAGTCATAAACAACGACC
1 CAGTCATAAACAACGACC
*
106345 CAGTCGTAAACAACG
1 CAGTCATAAACAACG
106360 CAATCAGATA
Statistics
Matches: 63, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
18 57 0.90
19 6 0.10
ACGTcount: A:0.43, C:0.28, G:0.16, T:0.14
Consensus pattern (18 bp):
CAGTCATAAACAACGACC
Left flanking sequence: Indices 105773 -- 106272
CATCGATGCGATACGGCTCGTGCCAGAAGATGCCAAGAGTCGGGGTTGTCAAGGTAGCCCCACCG
GACATCGCCCGAGGGCAATCATGACATGCCGCGTGGTGGGGCGGAAATAGCCTGTAGCACATGTT
TGCAAACAAACAGGAATAGTATATTCATAACCCCGGGAAACGCAGGTGCAATTGACTTTGAAGGC
GACATGCAGTGACAGCAAATGCAGTCCGTGAATCGACAGACACTGAACCCTGCGTGCATTGCCAA
CCTAGTTTGTGGGCTCCGTCCGATTGGGTATCGCAGTGTCCCCAGTTTATTCTCGTAACCTTGTT
TCGCCGTTTCCGACCTGACTCGGGTAGGCACATTTCCGAAACCAAACAAGGTTTGGTCGGAGTTA
CTCCGGTTGTGGTGTCGGGCATGCGTAGTGGGCCAACATCTGCCAAAGCAACGCCTCTGCCTAAG
CCCCATAGGCCAGTGCTCTTACGACCATCTGTAAGCAACGCAAAT
Right flanking sequence: Indices 106360 -- 106859
CAATCAGATAAACAACGAAAATCAGTCAAACAACGCAAATCAGTCAAACGCAAATCAGTAACCAA
CGCAAATCAGTCAAACAACGTAAATCAGTCAAATCAGTCATAAACGAACCTGTCATAAACAACAA
CCCAGTCATAAACAACAACCTAGTTATAAACAACAACCCAAACGCCCTTATCTGCCTATTCTCTA
CATCTCATTCACTACTTCTGGGCCGTGGCCCGTGTTTATTTGCCCGAGGACTCGGTGATGGTGCC
CAAATTCGAGTTGGACGACACCAGCTCGGGCTGGCTATATGCAAAGGTGGACTTGGGGTCCAAAG
TAAACGGAAGCGCCGGCATGTCTTGGCTGCGCCACAGGCCCGACTCTTCATCCTCCTCGGTCACC
AGGGCAAACAGACCCTGCAGACGTACCAGCGGCGCCCGCAGCACCAGCCGCAGCCGCAGCGCCTC
CGGGTTGAGCAACCCCTTTTTGTAAAACGTCACCGTCTTGGTGTG
Found at i:106411 original size:15 final size:15
Alignment explanation
Indices: 106391--106440 Score: 73
Period size: 15 Copynumber: 3.2 Consensus size: 15
106381 TCAGTCAAAC
106391 AACGCAAATCAGTCA
1 AACGCAAATCAGTCA
*
106406 AACGCAAATCAGTAACC
1 AACGCAAATCAGT--CA
106423 AACGCAAATCAGTCA
1 AACGCAAATCAGTCA
106438 AAC
1 AAC
106441 AACGTAAATC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
15 17 0.55
17 14 0.45
ACGTcount: A:0.48, C:0.28, G:0.12, T:0.12
Consensus pattern (15 bp):
AACGCAAATCAGTCA
Left flanking sequence: Indices 105891 -- 106390
GTAGCACATGTTTGCAAACAAACAGGAATAGTATATTCATAACCCCGGGAAACGCAGGTGCAATT
GACTTTGAAGGCGACATGCAGTGACAGCAAATGCAGTCCGTGAATCGACAGACACTGAACCCTGC
GTGCATTGCCAACCTAGTTTGTGGGCTCCGTCCGATTGGGTATCGCAGTGTCCCCAGTTTATTCT
CGTAACCTTGTTTCGCCGTTTCCGACCTGACTCGGGTAGGCACATTTCCGAAACCAAACAAGGTT
TGGTCGGAGTTACTCCGGTTGTGGTGTCGGGCATGCGTAGTGGGCCAACATCTGCCAAAGCAACG
CCTCTGCCTAAGCCCCATAGGCCAGTGCTCTTACGACCATCTGTAAGCAACGCAAATCAGTCATA
ACAACGTAAGCAGTCATAACAACGTAAGCAGTCATAAACGACGACCCAGTCATAAACAACGACCC
AGTCGTAAACAACGCAATCAGATAAACAACGAAAATCAGTCAAAC
Right flanking sequence: Indices 106441 -- 106940
AACGTAAATCAGTCAAATCAGTCATAAACGAACCTGTCATAAACAACAACCCAGTCATAAACAAC
AACCTAGTTATAAACAACAACCCAAACGCCCTTATCTGCCTATTCTCTACATCTCATTCACTACT
TCTGGGCCGTGGCCCGTGTTTATTTGCCCGAGGACTCGGTGATGGTGCCCAAATTCGAGTTGGAC
GACACCAGCTCGGGCTGGCTATATGCAAAGGTGGACTTGGGGTCCAAAGTAAACGGAAGCGCCGG
CATGTCTTGGCTGCGCCACAGGCCCGACTCTTCATCCTCCTCGGTCACCAGGGCAAACAGACCCT
GCAGACGTACCAGCGGCGCCCGCAGCACCAGCCGCAGCCGCAGCGCCTCCGGGTTGAGCAACCCC
TTTTTGTAAAACGTCACCGTCTTGGTGTGGGTCTGGATCTTCTGCAGCTGGTACCGCGACTCCAT
CACCGCCTTGACGGGCTTCTTGGTGTACGAGTTCAGCCGCAAGAA
Found at i:106426 original size:50 final size:50
Alignment explanation
Indices: 106356--106457 Score: 161
Period size: 50 Copynumber: 2.0 Consensus size: 50
106346 AGTCGTAAAC
106356 AACGCAATCAGATAAACAACGAAAATCAGTCAAACAACGCAAATCAGTCA
1 AACGCAATCAGATAAACAACGAAAATCAGTCAAACAACGCAAATCAGTCA
* * *
106406 AACGCAAATCAG-TAACCAACGCAAATCAGTCAAACAACGTAAATCAGTCA
1 AACGC-AATCAGATAAACAACGAAAATCAGTCAAACAACGCAAATCAGTCA
106456 AA
1 AA
106458 TCAGTCATAA
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
50 42 0.88
51 6 0.12
ACGTcount: A:0.51, C:0.25, G:0.12, T:0.13
Consensus pattern (50 bp):
AACGCAATCAGATAAACAACGAAAATCAGTCAAACAACGCAAATCAGTCA
Left flanking sequence: Indices 105856 -- 106355
TCATGACATGCCGCGTGGTGGGGCGGAAATAGCCTGTAGCACATGTTTGCAAACAAACAGGAATA
GTATATTCATAACCCCGGGAAACGCAGGTGCAATTGACTTTGAAGGCGACATGCAGTGACAGCAA
ATGCAGTCCGTGAATCGACAGACACTGAACCCTGCGTGCATTGCCAACCTAGTTTGTGGGCTCCG
TCCGATTGGGTATCGCAGTGTCCCCAGTTTATTCTCGTAACCTTGTTTCGCCGTTTCCGACCTGA
CTCGGGTAGGCACATTTCCGAAACCAAACAAGGTTTGGTCGGAGTTACTCCGGTTGTGGTGTCGG
GCATGCGTAGTGGGCCAACATCTGCCAAAGCAACGCCTCTGCCTAAGCCCCATAGGCCAGTGCTC
TTACGACCATCTGTAAGCAACGCAAATCAGTCATAACAACGTAAGCAGTCATAACAACGTAAGCA
GTCATAAACGACGACCCAGTCATAAACAACGACCCAGTCGTAAAC
Right flanking sequence: Indices 106458 -- 106957
TCAGTCATAAACGAACCTGTCATAAACAACAACCCAGTCATAAACAACAACCTAGTTATAAACAA
CAACCCAAACGCCCTTATCTGCCTATTCTCTACATCTCATTCACTACTTCTGGGCCGTGGCCCGT
GTTTATTTGCCCGAGGACTCGGTGATGGTGCCCAAATTCGAGTTGGACGACACCAGCTCGGGCTG
GCTATATGCAAAGGTGGACTTGGGGTCCAAAGTAAACGGAAGCGCCGGCATGTCTTGGCTGCGCC
ACAGGCCCGACTCTTCATCCTCCTCGGTCACCAGGGCAAACAGACCCTGCAGACGTACCAGCGGC
GCCCGCAGCACCAGCCGCAGCCGCAGCGCCTCCGGGTTGAGCAACCCCTTTTTGTAAAACGTCAC
CGTCTTGGTGTGGGTCTGGATCTTCTGCAGCTGGTACCGCGACTCCATCACCGCCTTGACGGGCT
TCTTGGTGTACGAGTTCAGCCGCAAGAACCGCGGTGTCAGCGGCA
Found at i:106431 original size:32 final size:33
Alignment explanation
Indices: 106373--106440 Score: 111
Period size: 32 Copynumber: 2.1 Consensus size: 33
106363 TCAGATAAAC
106373 AACGAAAATCAGTCAAACAACGCAAATCAGTCA
1 AACGAAAATCAGTCAAACAACGCAAATCAGTCA
* *
106406 AACGCAAATCAGT-AACCAACGCAAATCAGTCA
1 AACGAAAATCAGTCAAACAACGCAAATCAGTCA
106438 AAC
1 AAC
106441 AACGTAAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
32 21 0.64
33 12 0.36
ACGTcount: A:0.50, C:0.26, G:0.12, T:0.12
Consensus pattern (33 bp):
AACGAAAATCAGTCAAACAACGCAAATCAGTCA
Left flanking sequence: Indices 105873 -- 106372
GTGGGGCGGAAATAGCCTGTAGCACATGTTTGCAAACAAACAGGAATAGTATATTCATAACCCCG
GGAAACGCAGGTGCAATTGACTTTGAAGGCGACATGCAGTGACAGCAAATGCAGTCCGTGAATCG
ACAGACACTGAACCCTGCGTGCATTGCCAACCTAGTTTGTGGGCTCCGTCCGATTGGGTATCGCA
GTGTCCCCAGTTTATTCTCGTAACCTTGTTTCGCCGTTTCCGACCTGACTCGGGTAGGCACATTT
CCGAAACCAAACAAGGTTTGGTCGGAGTTACTCCGGTTGTGGTGTCGGGCATGCGTAGTGGGCCA
ACATCTGCCAAAGCAACGCCTCTGCCTAAGCCCCATAGGCCAGTGCTCTTACGACCATCTGTAAG
CAACGCAAATCAGTCATAACAACGTAAGCAGTCATAACAACGTAAGCAGTCATAAACGACGACCC
AGTCATAAACAACGACCCAGTCGTAAACAACGCAATCAGATAAAC
Right flanking sequence: Indices 106441 -- 106940
AACGTAAATCAGTCAAATCAGTCATAAACGAACCTGTCATAAACAACAACCCAGTCATAAACAAC
AACCTAGTTATAAACAACAACCCAAACGCCCTTATCTGCCTATTCTCTACATCTCATTCACTACT
TCTGGGCCGTGGCCCGTGTTTATTTGCCCGAGGACTCGGTGATGGTGCCCAAATTCGAGTTGGAC
GACACCAGCTCGGGCTGGCTATATGCAAAGGTGGACTTGGGGTCCAAAGTAAACGGAAGCGCCGG
CATGTCTTGGCTGCGCCACAGGCCCGACTCTTCATCCTCCTCGGTCACCAGGGCAAACAGACCCT
GCAGACGTACCAGCGGCGCCCGCAGCACCAGCCGCAGCCGCAGCGCCTCCGGGTTGAGCAACCCC
TTTTTGTAAAACGTCACCGTCTTGGTGTGGGTCTGGATCTTCTGCAGCTGGTACCGCGACTCCAT
CACCGCCTTGACGGGCTTCTTGGTGTACGAGTTCAGCCGCAAGAA
Found at i:106454 original size:18 final size:18
Alignment explanation
Indices: 106352--106457 Score: 134
Period size: 18 Copynumber: 6.2 Consensus size: 18
106342 ACCCAGTCGT
106352 AAACAACGC-AATCAGAT-
1 AAACAACGCAAATCAG-TC
*
106369 AAACAACGAAAATCAGTC
1 AAACAACGCAAATCAGTC
106387 AAACAACGCAAATCAGTC
1 AAACAACGCAAATCAGTC
106405 --A-AACGCAAATCAGT-
1 AAACAACGCAAATCAGTC
*
106419 AACCAACGCAAATCAGTC
1 AAACAACGCAAATCAGTC
*
106437 AAACAACGTAAATCAGTC
1 AAACAACGCAAATCAGTC
106455 AAA
1 AAA
106458 TCAGTCATAA
Statistics
Matches: 78, Mismatches: 5, Indels: 11
0.83 0.05 0.12
Matches are distributed among these distances:
15 13 0.17
16 1 0.01
17 22 0.28
18 42 0.54
ACGTcount: A:0.52, C:0.25, G:0.11, T:0.12
Consensus pattern (18 bp):
AAACAACGCAAATCAGTC
Left flanking sequence: Indices 105852 -- 106351
GCAATCATGACATGCCGCGTGGTGGGGCGGAAATAGCCTGTAGCACATGTTTGCAAACAAACAGG
AATAGTATATTCATAACCCCGGGAAACGCAGGTGCAATTGACTTTGAAGGCGACATGCAGTGACA
GCAAATGCAGTCCGTGAATCGACAGACACTGAACCCTGCGTGCATTGCCAACCTAGTTTGTGGGC
TCCGTCCGATTGGGTATCGCAGTGTCCCCAGTTTATTCTCGTAACCTTGTTTCGCCGTTTCCGAC
CTGACTCGGGTAGGCACATTTCCGAAACCAAACAAGGTTTGGTCGGAGTTACTCCGGTTGTGGTG
TCGGGCATGCGTAGTGGGCCAACATCTGCCAAAGCAACGCCTCTGCCTAAGCCCCATAGGCCAGT
GCTCTTACGACCATCTGTAAGCAACGCAAATCAGTCATAACAACGTAAGCAGTCATAACAACGTA
AGCAGTCATAAACGACGACCCAGTCATAAACAACGACCCAGTCGT
Right flanking sequence: Indices 106458 -- 106957
TCAGTCATAAACGAACCTGTCATAAACAACAACCCAGTCATAAACAACAACCTAGTTATAAACAA
CAACCCAAACGCCCTTATCTGCCTATTCTCTACATCTCATTCACTACTTCTGGGCCGTGGCCCGT
GTTTATTTGCCCGAGGACTCGGTGATGGTGCCCAAATTCGAGTTGGACGACACCAGCTCGGGCTG
GCTATATGCAAAGGTGGACTTGGGGTCCAAAGTAAACGGAAGCGCCGGCATGTCTTGGCTGCGCC
ACAGGCCCGACTCTTCATCCTCCTCGGTCACCAGGGCAAACAGACCCTGCAGACGTACCAGCGGC
GCCCGCAGCACCAGCCGCAGCCGCAGCGCCTCCGGGTTGAGCAACCCCTTTTTGTAAAACGTCAC
CGTCTTGGTGTGGGTCTGGATCTTCTGCAGCTGGTACCGCGACTCCATCACCGCCTTGACGGGCT
TCTTGGTGTACGAGTTCAGCCGCAAGAACCGCGGTGTCAGCGGCA
Found at i:106499 original size:18 final size:18
Alignment explanation
Indices: 106476--106529 Score: 90
Period size: 18 Copynumber: 3.0 Consensus size: 18
106466 AAACGAACCT
106476 GTCATAAACAACAACCCA
1 GTCATAAACAACAACCCA
*
106494 GTCATAAACAACAACCTA
1 GTCATAAACAACAACCCA
*
106512 GTTATAAACAACAACCCA
1 GTCATAAACAACAACCCA
106530 AACGCCCTTA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.50, C:0.30, G:0.06, T:0.15
Consensus pattern (18 bp):
GTCATAAACAACAACCCA
Left flanking sequence: Indices 105976 -- 106475
GTGACAGCAAATGCAGTCCGTGAATCGACAGACACTGAACCCTGCGTGCATTGCCAACCTAGTTT
GTGGGCTCCGTCCGATTGGGTATCGCAGTGTCCCCAGTTTATTCTCGTAACCTTGTTTCGCCGTT
TCCGACCTGACTCGGGTAGGCACATTTCCGAAACCAAACAAGGTTTGGTCGGAGTTACTCCGGTT
GTGGTGTCGGGCATGCGTAGTGGGCCAACATCTGCCAAAGCAACGCCTCTGCCTAAGCCCCATAG
GCCAGTGCTCTTACGACCATCTGTAAGCAACGCAAATCAGTCATAACAACGTAAGCAGTCATAAC
AACGTAAGCAGTCATAAACGACGACCCAGTCATAAACAACGACCCAGTCGTAAACAACGCAATCA
GATAAACAACGAAAATCAGTCAAACAACGCAAATCAGTCAAACGCAAATCAGTAACCAACGCAAA
TCAGTCAAACAACGTAAATCAGTCAAATCAGTCATAAACGAACCT
Right flanking sequence: Indices 106530 -- 107029
AACGCCCTTATCTGCCTATTCTCTACATCTCATTCACTACTTCTGGGCCGTGGCCCGTGTTTATT
TGCCCGAGGACTCGGTGATGGTGCCCAAATTCGAGTTGGACGACACCAGCTCGGGCTGGCTATAT
GCAAAGGTGGACTTGGGGTCCAAAGTAAACGGAAGCGCCGGCATGTCTTGGCTGCGCCACAGGCC
CGACTCTTCATCCTCCTCGGTCACCAGGGCAAACAGACCCTGCAGACGTACCAGCGGCGCCCGCA
GCACCAGCCGCAGCCGCAGCGCCTCCGGGTTGAGCAACCCCTTTTTGTAAAACGTCACCGTCTTG
GTGTGGGTCTGGATCTTCTGCAGCTGGTACCGCGACTCCATCACCGCCTTGACGGGCTTCTTGGT
GTACGAGTTCAGCCGCAAGAACCGCGGTGTCAGCGGCAGCAGTGCCTCCAGAGCCGCCGCCAGCG
TGCGCTCGTGCTCCTCAAAGTCAAAGTCCGCGGGAAGCAGGTTGA
Found at i:106526 original size:36 final size:33
Alignment explanation
Indices: 106459--106529 Score: 97
Period size: 36 Copynumber: 2.1 Consensus size: 33
106449 TCAGTCAAAT
*
106459 CAGTCATAAACGAACCTGTCATAAACAACAACC
1 CAGTCATAAACCAACCTGTCATAAACAACAACC
*
106492 CAGTCATAAACAACAACCTAGTTATAAACAACAACC
1 CAGTCATAAAC--CAACCT-GTCATAAACAACAACC
106528 CA
1 CA
106530 AACGCCCTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
33 11 0.33
35 5 0.15
36 17 0.52
ACGTcount: A:0.48, C:0.30, G:0.07, T:0.15
Consensus pattern (33 bp):
CAGTCATAAACCAACCTGTCATAAACAACAACC
Left flanking sequence: Indices 105959 -- 106458
TTTGAAGGCGACATGCAGTGACAGCAAATGCAGTCCGTGAATCGACAGACACTGAACCCTGCGTG
CATTGCCAACCTAGTTTGTGGGCTCCGTCCGATTGGGTATCGCAGTGTCCCCAGTTTATTCTCGT
AACCTTGTTTCGCCGTTTCCGACCTGACTCGGGTAGGCACATTTCCGAAACCAAACAAGGTTTGG
TCGGAGTTACTCCGGTTGTGGTGTCGGGCATGCGTAGTGGGCCAACATCTGCCAAAGCAACGCCT
CTGCCTAAGCCCCATAGGCCAGTGCTCTTACGACCATCTGTAAGCAACGCAAATCAGTCATAACA
ACGTAAGCAGTCATAACAACGTAAGCAGTCATAAACGACGACCCAGTCATAAACAACGACCCAGT
CGTAAACAACGCAATCAGATAAACAACGAAAATCAGTCAAACAACGCAAATCAGTCAAACGCAAA
TCAGTAACCAACGCAAATCAGTCAAACAACGTAAATCAGTCAAAT
Right flanking sequence: Indices 106530 -- 107029
AACGCCCTTATCTGCCTATTCTCTACATCTCATTCACTACTTCTGGGCCGTGGCCCGTGTTTATT
TGCCCGAGGACTCGGTGATGGTGCCCAAATTCGAGTTGGACGACACCAGCTCGGGCTGGCTATAT
GCAAAGGTGGACTTGGGGTCCAAAGTAAACGGAAGCGCCGGCATGTCTTGGCTGCGCCACAGGCC
CGACTCTTCATCCTCCTCGGTCACCAGGGCAAACAGACCCTGCAGACGTACCAGCGGCGCCCGCA
GCACCAGCCGCAGCCGCAGCGCCTCCGGGTTGAGCAACCCCTTTTTGTAAAACGTCACCGTCTTG
GTGTGGGTCTGGATCTTCTGCAGCTGGTACCGCGACTCCATCACCGCCTTGACGGGCTTCTTGGT
GTACGAGTTCAGCCGCAAGAACCGCGGTGTCAGCGGCAGCAGTGCCTCCAGAGCCGCCGCCAGCG
TGCGCTCGTGCTCCTCAAAGTCAAAGTCCGCGGGAAGCAGGTTGA
Found at i:107855 original size:42 final size:42
Alignment explanation
Indices: 107807--107891 Score: 107
Period size: 42 Copynumber: 2.0 Consensus size: 42
107797 TGGGTGCTGT
* *
107807 GGCGGCGCGGCGGCTCGTCCGAGTCGGCAAACAGCTGGAGCA
1 GGCGGCGCGGCGGCCCCTCCGAGTCGGCAAACAGCTGGAGCA
* * * * *
107849 GGCGGCGTGGTGGCCCCTCGGAGTCTGTAAACAGCTGGAGCA
1 GGCGGCGCGGCGGCCCCTCCGAGTCGGCAAACAGCTGGAGCA
107891 G
1 G
107892 CCGTCGCTTG
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.16, C:0.28, G:0.42, T:0.13
Consensus pattern (42 bp):
GGCGGCGCGGCGGCCCCTCCGAGTCGGCAAACAGCTGGAGCA
Left flanking sequence: Indices 107307 -- 107806
GGCAAGCGTCAGCATCATGTTGTTGATCAGGTTGCGCTTGTTGCCGAGCGACGCCACCAGCATCC
GCCGTTCCAGCAGCCGGTCCAGACGGCGCTCGTCGTCCGCCACCGCGGCCGCGCCGGCCTCCTCG
TCCAACCGCATGCCGATGGCGTCCAATGTCGCCATCATGTCGAAGATCAGGTTGCGGTGCTCGCC
GGGCGGCATCTGCTGCTCCAAGTCGGTGAGCAACCCCATCATGTTGTGCACCAGCTTGCGCTTGT
GCTCCATGGGCACGTCCTCGGTCTCGAGCGACCCCAAGAGCTCCATCATCTGGCTGATCAGCTGG
CGGTTGACCGCGGACGGCGGGGCCAAGTGGGGCGACGTCAAGTGGGGCGTCTGGGTGGGCGATGC
CTGGGCCAGGCCCGCCAGCAACAGCTCGGTGGCCAGCACGTAGCCGTCGTAGCTCGCGCGCTTGT
ACCCGCGGTCCACCGTGATCTCCAAGATCGTCAGCTGGGTGCTGT
Right flanking sequence: Indices 107892 -- 108391
CCGTCGCTTGTCGGCGAACTCGGCGAACTCACGCGCCTTGTCCTCGGCGGTGCCGTTGAGGTCGC
CGTTGATCAGGTCGTGGTAGCTGCGAAACACCGGGTCTGGATGGCGAAACACCGGGTGGTGGTGG
CTGCGATAGACCAGATCCGAGTGGTCGTGGTGGCTACGGTCCAGCTGGTCATGGCTGCGAACCAC
CGCGTCCAGCTCGTGACTGCGAACCACCGCGTCCAGCTGGTCACTGCGAACCGGCTCCTGGCCAT
GGAAGTTCTGCAGTGCCTGCAAAAACAGCTGGTGGTGCCAGTCCAGCGTCGGCGCCAGCCCACGA
CGACGGTGGCCCGCCCGTGCCGCCGCCAACTCGGCAAACACGTCGCGCAACAGCCCCGTGCCCGT
GCCCGAGTCGTAGTCCACCAGCCCGCGCTTCGACCCGCGGATCAGCCCCGCCACCAGCGGCGGGA
AAAACGTGCCGTTGGGCGCCTTGAGCTGGTTGAGTGCCATGAGCG
Found at i:108096 original size:30 final size:30
Alignment explanation
Indices: 108060--108129 Score: 101
Period size: 27 Copynumber: 2.4 Consensus size: 30
108050 GGTGGCTACG
*
108060 GTCCAGCTGGTCATGGCTGCGAACCACCGC
1 GTCCAGCTGGTCATGACTGCGAACCACCGC
*
108090 GTCCAGC---TCGTGACTGCGAACCACCGC
1 GTCCAGCTGGTCATGACTGCGAACCACCGC
108117 GTCCAGCTGGTCA
1 GTCCAGCTGGTCA
108130 CTGCGAACCG
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
27 25 0.74
30 9 0.26
ACGTcount: A:0.17, C:0.37, G:0.29, T:0.17
Consensus pattern (30 bp):
GTCCAGCTGGTCATGACTGCGAACCACCGC
Left flanking sequence: Indices 107560 -- 108059
CGCTTGTGCTCCATGGGCACGTCCTCGGTCTCGAGCGACCCCAAGAGCTCCATCATCTGGCTGAT
CAGCTGGCGGTTGACCGCGGACGGCGGGGCCAAGTGGGGCGACGTCAAGTGGGGCGTCTGGGTGG
GCGATGCCTGGGCCAGGCCCGCCAGCAACAGCTCGGTGGCCAGCACGTAGCCGTCGTAGCTCGCG
CGCTTGTACCCGCGGTCCACCGTGATCTCCAAGATCGTCAGCTGGGTGCTGTGGCGGCGCGGCGG
CTCGTCCGAGTCGGCAAACAGCTGGAGCAGGCGGCGTGGTGGCCCCTCGGAGTCTGTAAACAGCT
GGAGCAGCCGTCGCTTGTCGGCGAACTCGGCGAACTCACGCGCCTTGTCCTCGGCGGTGCCGTTG
AGGTCGCCGTTGATCAGGTCGTGGTAGCTGCGAAACACCGGGTCTGGATGGCGAAACACCGGGTG
GTGGTGGCTGCGATAGACCAGATCCGAGTGGTCGTGGTGGCTACG
Right flanking sequence: Indices 108130 -- 108629
CTGCGAACCGGCTCCTGGCCATGGAAGTTCTGCAGTGCCTGCAAAAACAGCTGGTGGTGCCAGTC
CAGCGTCGGCGCCAGCCCACGACGACGGTGGCCCGCCCGTGCCGCCGCCAACTCGGCAAACACGT
CGCGCAACAGCCCCGTGCCCGTGCCCGAGTCGTAGTCCACCAGCCCGCGCTTCGACCCGCGGATC
AGCCCCGCCACCAGCGGCGGGAAAAACGTGCCGTTGGGCGCCTTGAGCTGGTTGAGTGCCATGAG
CGGCAGCAAGTCGAGCAGCACCGTCAGCGTCTGCGACATCGGCGGCGGCGGCGTCATCGTGGGGT
CGGTGGGCGGGTCCGTGGTCGGCAGCTTGCTCATGTCGAGGTAGTTCTCCAAGATGTCGTCGCCG
TACAACGAGTCCTCGGGCCGCGCGGGCTTGGGCGACGGGCGTGCCAGCCCGCCGGGTGGCTTGAG
TGCGAGCAGCTCCACCGACATGTGGTACAGCCGGTTGAACACCTT
Found at i:108110 original size:27 final size:27
Alignment explanation
Indices: 108076--108138 Score: 108
Period size: 27 Copynumber: 2.3 Consensus size: 27
108066 CTGGTCATGG
*
108076 CTGCGAACCACCGCGTCCAGCTCGTGA
1 CTGCGAACCACCGCGTCCAGCTCGTCA
*
108103 CTGCGAACCACCGCGTCCAGCTGGTCA
1 CTGCGAACCACCGCGTCCAGCTCGTCA
108130 CTGCGAACC
1 CTGCGAACC
108139 GGCTCCTGGC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.19, C:0.41, G:0.25, T:0.14
Consensus pattern (27 bp):
CTGCGAACCACCGCGTCCAGCTCGTCA
Left flanking sequence: Indices 107576 -- 108075
GCACGTCCTCGGTCTCGAGCGACCCCAAGAGCTCCATCATCTGGCTGATCAGCTGGCGGTTGACC
GCGGACGGCGGGGCCAAGTGGGGCGACGTCAAGTGGGGCGTCTGGGTGGGCGATGCCTGGGCCAG
GCCCGCCAGCAACAGCTCGGTGGCCAGCACGTAGCCGTCGTAGCTCGCGCGCTTGTACCCGCGGT
CCACCGTGATCTCCAAGATCGTCAGCTGGGTGCTGTGGCGGCGCGGCGGCTCGTCCGAGTCGGCA
AACAGCTGGAGCAGGCGGCGTGGTGGCCCCTCGGAGTCTGTAAACAGCTGGAGCAGCCGTCGCTT
GTCGGCGAACTCGGCGAACTCACGCGCCTTGTCCTCGGCGGTGCCGTTGAGGTCGCCGTTGATCA
GGTCGTGGTAGCTGCGAAACACCGGGTCTGGATGGCGAAACACCGGGTGGTGGTGGCTGCGATAG
ACCAGATCCGAGTGGTCGTGGTGGCTACGGTCCAGCTGGTCATGG
Right flanking sequence: Indices 108139 -- 108638
GGCTCCTGGCCATGGAAGTTCTGCAGTGCCTGCAAAAACAGCTGGTGGTGCCAGTCCAGCGTCGG
CGCCAGCCCACGACGACGGTGGCCCGCCCGTGCCGCCGCCAACTCGGCAAACACGTCGCGCAACA
GCCCCGTGCCCGTGCCCGAGTCGTAGTCCACCAGCCCGCGCTTCGACCCGCGGATCAGCCCCGCC
ACCAGCGGCGGGAAAAACGTGCCGTTGGGCGCCTTGAGCTGGTTGAGTGCCATGAGCGGCAGCAA
GTCGAGCAGCACCGTCAGCGTCTGCGACATCGGCGGCGGCGGCGTCATCGTGGGGTCGGTGGGCG
GGTCCGTGGTCGGCAGCTTGCTCATGTCGAGGTAGTTCTCCAAGATGTCGTCGCCGTACAACGAG
TCCTCGGGCCGCGCGGGCTTGGGCGACGGGCGTGCCAGCCCGCCGGGTGGCTTGAGTGCGAGCAG
CTCCACCGACATGTGGTACAGCCGGTTGAACACCTTGGGTGCCAG
Found at i:108977 original size:18 final size:18
Alignment explanation
Indices: 108954--109011 Score: 71
Period size: 18 Copynumber: 3.2 Consensus size: 18
108944 TGTACAGGCG
108954 GTCGTTGTACAGCTGGTC
1 GTCGTTGTACAGCTGGTC
*
108972 GTCGTTGTACAGCTGATC
1 GTCGTTGTACAGCTGGTC
* * * *
108990 GTCCTGGAACAGCTCGTC
1 GTCGTTGTACAGCTGGTC
109008 GTCG
1 GTCG
109012 CCAACGGGGC
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.14, C:0.26, G:0.31, T:0.29
Consensus pattern (18 bp):
GTCGTTGTACAGCTGGTC
Left flanking sequence: Indices 108454 -- 108953
TCGGTGGGCGGGTCCGTGGTCGGCAGCTTGCTCATGTCGAGGTAGTTCTCCAAGATGTCGTCGCC
GTACAACGAGTCCTCGGGCCGCGCGGGCTTGGGCGACGGGCGTGCCAGCCCGCCGGGTGGCTTGA
GTGCGAGCAGCTCCACCGACATGTGGTACAGCCGGTTGAACACCTTGGGTGCCAGAAGCGGCGGC
GGCGGCTCGAGCGTCTGGTAGGTGTCACGTGGCTCGTCGTGGTACGCCGCCAACAACTGCAGCGG
GGTGTCTGGCGACAGCGCGCCGTGGCTGGCGTCGGGCGTCAACGGGTTGGCCGCCGGGAAGTCGA
GGTTGTGTGGGGTGAGCGGCGACCGGCGGGCCTCCAACGCGGTGTCGGAGCCGCGGGCACTGGCC
AACGCGCTCAGCACCAGGCCGGATATCGGGCCGGACACCGGGCCACGCACGCTGTACTGCGAGCC
GCCCAACCCGAGGAAGCGCTCCTCGTCCTTGCTTTTGTACAGGCG
Right flanking sequence: Indices 109012 -- 109511
CCAACGGGGCCAAACAGCGGTGGAGCCGCGAGCTCGGGCTCGGTGTACGCGTGCTCAGAAAACCC
GGGCTCACCGTACTCGTCCACGTACTTGGGCTCAGCGTACTCGTCCACGTACTTGGGCTCAGTGT
ACTTGGGCTCGGTGTACCCGGGCTCGTATCCGGGCTCGTATCCGGGCTCGTACTCGGCCTCGGCA
TACTCGTCCACGTACTCGTCCACCAGGTAGTGGTAGTCCGAGCCCGACCCGCTGGCGTCGTCCAA
CGCGCCGTTGTAGCCCACGCCGTCGTCCTCGAGCCCGAGCGCGTCGTTGTAGCCCACGTCGCCCT
CGCCGTCGCCGTCGTCGTCGTACCCGTTCATCTCGTAGTCGTAGTCGCTGAACTCGTCCACCTCG
TACCCCAAGTCACGCTCGGAGAACGTGTTGGCGGCAGGCGCTGGCGGTGTAGGCGTCATCTTGTG
CGTCTTGTAGTACTTGACCGAGGTGTTGCGCCCGCCAATCACGTC
Found at i:109117 original size:15 final size:15
Alignment explanation
Indices: 109097--109151 Score: 62
Period size: 15 Copynumber: 3.9 Consensus size: 15
109087 TACTCGTCCA
109097 CGTACTTGGGCTCAG
1 CGTACTTGGGCTCAG
* *
109112 CGTAC-TCGTC-CA-
1 CGTACTTGGGCTCAG
109124 CGTACTTGGGCTCAG
1 CGTACTTGGGCTCAG
*
109139 TGTACTTGGGCTC
1 CGTACTTGGGCTC
109152 GGTGTACCCG
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
12 5 0.16
13 5 0.16
14 5 0.16
15 17 0.53
ACGTcount: A:0.13, C:0.29, G:0.29, T:0.29
Consensus pattern (15 bp):
CGTACTTGGGCTCAG
Left flanking sequence: Indices 108597 -- 109096
CACCGACATGTGGTACAGCCGGTTGAACACCTTGGGTGCCAGAAGCGGCGGCGGCGGCTCGAGCG
TCTGGTAGGTGTCACGTGGCTCGTCGTGGTACGCCGCCAACAACTGCAGCGGGGTGTCTGGCGAC
AGCGCGCCGTGGCTGGCGTCGGGCGTCAACGGGTTGGCCGCCGGGAAGTCGAGGTTGTGTGGGGT
GAGCGGCGACCGGCGGGCCTCCAACGCGGTGTCGGAGCCGCGGGCACTGGCCAACGCGCTCAGCA
CCAGGCCGGATATCGGGCCGGACACCGGGCCACGCACGCTGTACTGCGAGCCGCCCAACCCGAGG
AAGCGCTCCTCGTCCTTGCTTTTGTACAGGCGGTCGTTGTACAGCTGGTCGTCGTTGTACAGCTG
ATCGTCCTGGAACAGCTCGTCGTCGCCAACGGGGCCAAACAGCGGTGGAGCCGCGAGCTCGGGCT
CGGTGTACGCGTGCTCAGAAAACCCGGGCTCACCGTACTCGTCCA
Right flanking sequence: Indices 109152 -- 109651
GGTGTACCCGGGCTCGTATCCGGGCTCGTATCCGGGCTCGTACTCGGCCTCGGCATACTCGTCCA
CGTACTCGTCCACCAGGTAGTGGTAGTCCGAGCCCGACCCGCTGGCGTCGTCCAACGCGCCGTTG
TAGCCCACGCCGTCGTCCTCGAGCCCGAGCGCGTCGTTGTAGCCCACGTCGCCCTCGCCGTCGCC
GTCGTCGTCGTACCCGTTCATCTCGTAGTCGTAGTCGCTGAACTCGTCCACCTCGTACCCCAAGT
CACGCTCGGAGAACGTGTTGGCGGCAGGCGCTGGCGGTGTAGGCGTCATCTTGTGCGTCTTGTAG
TACTTGACCGAGGTGTTGCGCCCGCCAATCACGTCCTTGGTGAACGAAAACTGCAGCAGGTCCAG
CGCGTCCAGCTCGTCCAGGTAGGCGATCTCGTCCTCCTCGGCAATGTCGTCGTCGCGCACAAGCG
GCACGGGAGCCGGCCCGACCAGCGGCTCCGTCAGCGGCGTCAGCA
Found at i:109138 original size:27 final size:27
Alignment explanation
Indices: 109077--109144 Score: 118
Period size: 27 Copynumber: 2.5 Consensus size: 27
109067 CAGAAAACCC
*
109077 GGGCTCACCGTACTCGTCCACGTACTT
1 GGGCTCAGCGTACTCGTCCACGTACTT
109104 GGGCTCAGCGTACTCGTCCACGTACTT
1 GGGCTCAGCGTACTCGTCCACGTACTT
*
109131 GGGCTCAGTGTACT
1 GGGCTCAGCGTACT
109145 TGGGCTCGGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.15, C:0.32, G:0.26, T:0.26
Consensus pattern (27 bp):
GGGCTCAGCGTACTCGTCCACGTACTT
Left flanking sequence: Indices 108577 -- 109076
GGCTTGAGTGCGAGCAGCTCCACCGACATGTGGTACAGCCGGTTGAACACCTTGGGTGCCAGAAG
CGGCGGCGGCGGCTCGAGCGTCTGGTAGGTGTCACGTGGCTCGTCGTGGTACGCCGCCAACAACT
GCAGCGGGGTGTCTGGCGACAGCGCGCCGTGGCTGGCGTCGGGCGTCAACGGGTTGGCCGCCGGG
AAGTCGAGGTTGTGTGGGGTGAGCGGCGACCGGCGGGCCTCCAACGCGGTGTCGGAGCCGCGGGC
ACTGGCCAACGCGCTCAGCACCAGGCCGGATATCGGGCCGGACACCGGGCCACGCACGCTGTACT
GCGAGCCGCCCAACCCGAGGAAGCGCTCCTCGTCCTTGCTTTTGTACAGGCGGTCGTTGTACAGC
TGGTCGTCGTTGTACAGCTGATCGTCCTGGAACAGCTCGTCGTCGCCAACGGGGCCAAACAGCGG
TGGAGCCGCGAGCTCGGGCTCGGTGTACGCGTGCTCAGAAAACCC
Right flanking sequence: Indices 109145 -- 109644
TGGGCTCGGTGTACCCGGGCTCGTATCCGGGCTCGTATCCGGGCTCGTACTCGGCCTCGGCATAC
TCGTCCACGTACTCGTCCACCAGGTAGTGGTAGTCCGAGCCCGACCCGCTGGCGTCGTCCAACGC
GCCGTTGTAGCCCACGCCGTCGTCCTCGAGCCCGAGCGCGTCGTTGTAGCCCACGTCGCCCTCGC
CGTCGCCGTCGTCGTCGTACCCGTTCATCTCGTAGTCGTAGTCGCTGAACTCGTCCACCTCGTAC
CCCAAGTCACGCTCGGAGAACGTGTTGGCGGCAGGCGCTGGCGGTGTAGGCGTCATCTTGTGCGT
CTTGTAGTACTTGACCGAGGTGTTGCGCCCGCCAATCACGTCCTTGGTGAACGAAAACTGCAGCA
GGTCCAGCGCGTCCAGCTCGTCCAGGTAGGCGATCTCGTCCTCCTCGGCAATGTCGTCGTCGCGC
ACAAGCGGCACGGGAGCCGGCCCGACCAGCGGCTCCGTCAGCGGC
Found at i:109156 original size:15 final size:15
Alignment explanation
Indices: 109125--109158 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
109115 ACTCGTCCAC
109125 GTACTTGGGCTCAGT
1 GTACTTGGGCTCAGT
*
109140 GTACTTGGGCTCGGT
1 GTACTTGGGCTCAGT
109155 GTAC
1 GTAC
109159 CCGGGCTCGT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.12, C:0.21, G:0.35, T:0.32
Consensus pattern (15 bp):
GTACTTGGGCTCAGT
Left flanking sequence: Indices 108625 -- 109124
ACCTTGGGTGCCAGAAGCGGCGGCGGCGGCTCGAGCGTCTGGTAGGTGTCACGTGGCTCGTCGTG
GTACGCCGCCAACAACTGCAGCGGGGTGTCTGGCGACAGCGCGCCGTGGCTGGCGTCGGGCGTCA
ACGGGTTGGCCGCCGGGAAGTCGAGGTTGTGTGGGGTGAGCGGCGACCGGCGGGCCTCCAACGCG
GTGTCGGAGCCGCGGGCACTGGCCAACGCGCTCAGCACCAGGCCGGATATCGGGCCGGACACCGG
GCCACGCACGCTGTACTGCGAGCCGCCCAACCCGAGGAAGCGCTCCTCGTCCTTGCTTTTGTACA
GGCGGTCGTTGTACAGCTGGTCGTCGTTGTACAGCTGATCGTCCTGGAACAGCTCGTCGTCGCCA
ACGGGGCCAAACAGCGGTGGAGCCGCGAGCTCGGGCTCGGTGTACGCGTGCTCAGAAAACCCGGG
CTCACCGTACTCGTCCACGTACTTGGGCTCAGCGTACTCGTCCAC
Right flanking sequence: Indices 109159 -- 109658
CCGGGCTCGTATCCGGGCTCGTATCCGGGCTCGTACTCGGCCTCGGCATACTCGTCCACGTACTC
GTCCACCAGGTAGTGGTAGTCCGAGCCCGACCCGCTGGCGTCGTCCAACGCGCCGTTGTAGCCCA
CGCCGTCGTCCTCGAGCCCGAGCGCGTCGTTGTAGCCCACGTCGCCCTCGCCGTCGCCGTCGTCG
TCGTACCCGTTCATCTCGTAGTCGTAGTCGCTGAACTCGTCCACCTCGTACCCCAAGTCACGCTC
GGAGAACGTGTTGGCGGCAGGCGCTGGCGGTGTAGGCGTCATCTTGTGCGTCTTGTAGTACTTGA
CCGAGGTGTTGCGCCCGCCAATCACGTCCTTGGTGAACGAAAACTGCAGCAGGTCCAGCGCGTCC
AGCTCGTCCAGGTAGGCGATCTCGTCCTCCTCGGCAATGTCGTCGTCGCGCACAAGCGGCACGGG
AGCCGGCCCGACCAGCGGCTCCGTCAGCGGCGTCAGCAAGTGCGA
Found at i:109176 original size:12 final size:12
Alignment explanation
Indices: 109159--109193 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
109149 CTCGGTGTAC
109159 CCGGGCTCGTAT
1 CCGGGCTCGTAT
109171 CCGGGCTCGTAT
1 CCGGGCTCGTAT
109183 CCGGGCTCGTA
1 CCGGGCTCGTA
109194 CTCGGCCTCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.09, C:0.34, G:0.34, T:0.23
Consensus pattern (12 bp):
CCGGGCTCGTAT
Left flanking sequence: Indices 108659 -- 109158
GCGTCTGGTAGGTGTCACGTGGCTCGTCGTGGTACGCCGCCAACAACTGCAGCGGGGTGTCTGGC
GACAGCGCGCCGTGGCTGGCGTCGGGCGTCAACGGGTTGGCCGCCGGGAAGTCGAGGTTGTGTGG
GGTGAGCGGCGACCGGCGGGCCTCCAACGCGGTGTCGGAGCCGCGGGCACTGGCCAACGCGCTCA
GCACCAGGCCGGATATCGGGCCGGACACCGGGCCACGCACGCTGTACTGCGAGCCGCCCAACCCG
AGGAAGCGCTCCTCGTCCTTGCTTTTGTACAGGCGGTCGTTGTACAGCTGGTCGTCGTTGTACAG
CTGATCGTCCTGGAACAGCTCGTCGTCGCCAACGGGGCCAAACAGCGGTGGAGCCGCGAGCTCGG
GCTCGGTGTACGCGTGCTCAGAAAACCCGGGCTCACCGTACTCGTCCACGTACTTGGGCTCAGCG
TACTCGTCCACGTACTTGGGCTCAGTGTACTTGGGCTCGGTGTAC
Right flanking sequence: Indices 109194 -- 109693
CTCGGCCTCGGCATACTCGTCCACGTACTCGTCCACCAGGTAGTGGTAGTCCGAGCCCGACCCGC
TGGCGTCGTCCAACGCGCCGTTGTAGCCCACGCCGTCGTCCTCGAGCCCGAGCGCGTCGTTGTAG
CCCACGTCGCCCTCGCCGTCGCCGTCGTCGTCGTACCCGTTCATCTCGTAGTCGTAGTCGCTGAA
CTCGTCCACCTCGTACCCCAAGTCACGCTCGGAGAACGTGTTGGCGGCAGGCGCTGGCGGTGTAG
GCGTCATCTTGTGCGTCTTGTAGTACTTGACCGAGGTGTTGCGCCCGCCAATCACGTCCTTGGTG
AACGAAAACTGCAGCAGGTCCAGCGCGTCCAGCTCGTCCAGGTAGGCGATCTCGTCCTCCTCGGC
AATGTCGTCGTCGCGCACAAGCGGCACGGGAGCCGGCCCGACCAGCGGCTCCGTCAGCGGCGTCA
GCAAGTGCGACGGGATCAGCAGCACCAGTGCCCGTGGCTGCGGCG
Found at i:110588 original size:18 final size:18
Alignment explanation
Indices: 110565--110633 Score: 120
Period size: 18 Copynumber: 3.8 Consensus size: 18
110555 GTGGGTACTG
110565 GGTGTAGTTTTGGGAGTT
1 GGTGTAGTTTTGGGAGTT
110583 GGTGTAGTTTTGGGAGTT
1 GGTGTAGTTTTGGGAGTT
*
110601 GGTGTAGTTTTGGGAATT
1 GGTGTAGTTTTGGGAGTT
*
110619 CGTGTAGTTTTGGGA
1 GGTGTAGTTTTGGGA
110634 ATTCGGGTAG
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 49 1.00
ACGTcount: A:0.13, C:0.01, G:0.42, T:0.43
Consensus pattern (18 bp):
GGTGTAGTTTTGGGAGTT
Left flanking sequence: Indices 110065 -- 110564
GGTGCCAGCGACCCGCTGGTGACCGGGGCGGCGCTCTGGGCTGCGGCAGCGGCACCGGGCGTGAC
CACCGGCGGGCTGAGCGGCCCCAGAATCACCAACGGCTTCGCGATGTTGAACGAGGCCTTGCCCT
TGATCACCTCGAACCCCTTGTTGCGGGTGGCGCGCGGCGAGCCCTTGGGCACCACCACCGGGCTG
GTGGTGGCCTCGTCGGCCAGCATGCGTTTGGCGGGCGATGCGCTGGTGGTCTTGAACATCAGCGG
GCGCGGGGTGTCGTTGGAGGACACCCGCGAGAAGCTGGTGGGCCGCAGCCGCAGCAGCACGCTGG
CCTCCTCCAGGTAGCGGCGGGGCGTGCCCTGGGACTGGGTGGGCGGCGGGCCCTTTTTCGTCTCG
GGAGTGGTCAGCTTCTGGCCAAACAAGTTGCGGATCGGCGTCAACAACTTCTTGGGCAGCTGTTT
GGGCGCTGGCATCGGCGCCGGCGCCTGGCCAAACTGTGGGTACTG
Right flanking sequence: Indices 110634 -- 111133
ATTCGGGTAGTTCTGTGAATTCTGGGCGTAGTTCTGGTAGCCCTTGGGCAGCGTGAACGTGGGCC
CGTGCAGACCCACCACCGGCAGCGACGTCGGGGTCTTTTGGGCTGACACCGGGCCCATGGTGGGT
TTGGCCTGGATCACGGGGGACGGGCTGGCAGAACCGGCGGCGCTCTTGGAGGCCCGCGGGGGCGG
CATCAGGAGTCCCAGGAGTGCCAGGATGTCGCCCTCCTCGATGGAATTGCCCAGCTCGTTGCGGC
GATGGCGCATGAACGACCTCATGGTACGGGTGGTTGGGGCTCCCTCGGAGGTGGAGGTCGCCTAC
AGCGCACAGGGACAGGGACGCGGGAACGGGGGATGTGCCAGGGCAGGGATCAGCTGGGTGGGGTG
CTGGGTGGGGTACTGGTGGTTGCCCGTGCCAATCGAATCGGGTTTTTTCAATGGCCAAAAGCTTG
TGGTTGCCCCGTTTTTGGATCCACGCGCGAGGTGCGTCTGAGGTT
Found at i:110634 original size:18 final size:18
Alignment explanation
Indices: 110566--110655 Score: 117
Period size: 18 Copynumber: 5.0 Consensus size: 18
110556 TGGGTACTGG
* *
110566 GTGTAGTTTTGGGAGTTG
1 GTGTAGTTTTGGGAATTC
* *
110584 GTGTAGTTTTGGGAGTTG
1 GTGTAGTTTTGGGAATTC
110602 GTGTAGTTTTGGGAATTC
1 GTGTAGTTTTGGGAATTC
110620 GTGTAGTTTTGGGAATTC
1 GTGTAGTTTTGGGAATTC
* * *
110638 GGGTAGTTCTGTGAATTC
1 GTGTAGTTTTGGGAATTC
110656 TGGGCGTAGT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 67 1.00
ACGTcount: A:0.14, C:0.04, G:0.38, T:0.43
Consensus pattern (18 bp):
GTGTAGTTTTGGGAATTC
Left flanking sequence: Indices 110066 -- 110565
GTGCCAGCGACCCGCTGGTGACCGGGGCGGCGCTCTGGGCTGCGGCAGCGGCACCGGGCGTGACC
ACCGGCGGGCTGAGCGGCCCCAGAATCACCAACGGCTTCGCGATGTTGAACGAGGCCTTGCCCTT
GATCACCTCGAACCCCTTGTTGCGGGTGGCGCGCGGCGAGCCCTTGGGCACCACCACCGGGCTGG
TGGTGGCCTCGTCGGCCAGCATGCGTTTGGCGGGCGATGCGCTGGTGGTCTTGAACATCAGCGGG
CGCGGGGTGTCGTTGGAGGACACCCGCGAGAAGCTGGTGGGCCGCAGCCGCAGCAGCACGCTGGC
CTCCTCCAGGTAGCGGCGGGGCGTGCCCTGGGACTGGGTGGGCGGCGGGCCCTTTTTCGTCTCGG
GAGTGGTCAGCTTCTGGCCAAACAAGTTGCGGATCGGCGTCAACAACTTCTTGGGCAGCTGTTTG
GGCGCTGGCATCGGCGCCGGCGCCTGGCCAAACTGTGGGTACTGG
Right flanking sequence: Indices 110656 -- 111155
TGGGCGTAGTTCTGGTAGCCCTTGGGCAGCGTGAACGTGGGCCCGTGCAGACCCACCACCGGCAG
CGACGTCGGGGTCTTTTGGGCTGACACCGGGCCCATGGTGGGTTTGGCCTGGATCACGGGGGACG
GGCTGGCAGAACCGGCGGCGCTCTTGGAGGCCCGCGGGGGCGGCATCAGGAGTCCCAGGAGTGCC
AGGATGTCGCCCTCCTCGATGGAATTGCCCAGCTCGTTGCGGCGATGGCGCATGAACGACCTCAT
GGTACGGGTGGTTGGGGCTCCCTCGGAGGTGGAGGTCGCCTACAGCGCACAGGGACAGGGACGCG
GGAACGGGGGATGTGCCAGGGCAGGGATCAGCTGGGTGGGGTGCTGGGTGGGGTACTGGTGGTTG
CCCGTGCCAATCGAATCGGGTTTTTTCAATGGCCAAAAGCTTGTGGTTGCCCCGTTTTTGGATCC
ACGCGCGAGGTGCGTCTGAGGTTTGCAACTGCCACCGCGGGGGGT
Found at i:111388 original size:15 final size:15
Alignment explanation
Indices: 111368--111400 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
111358 GATGGCGGGC
111368 TGGAAGAGCTACAGG
1 TGGAAGAGCTACAGG
*
111383 TGGAAGAGCTACGGG
1 TGGAAGAGCTACAGG
111398 TGG
1 TGG
111401 CTATGGGTGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.27, C:0.12, G:0.45, T:0.15
Consensus pattern (15 bp):
TGGAAGAGCTACAGG
Left flanking sequence: Indices 110868 -- 111367
GATGGAATTGCCCAGCTCGTTGCGGCGATGGCGCATGAACGACCTCATGGTACGGGTGGTTGGGG
CTCCCTCGGAGGTGGAGGTCGCCTACAGCGCACAGGGACAGGGACGCGGGAACGGGGGATGTGCC
AGGGCAGGGATCAGCTGGGTGGGGTGCTGGGTGGGGTACTGGTGGTTGCCCGTGCCAATCGAATC
GGGTTTTTTCAATGGCCAAAAGCTTGTGGTTGCCCCGTTTTTGGATCCACGCGCGAGGTGCGTCT
GAGGTTTGCAACTGCCACCGCGGGGGGTGGTTACGAAGGTGGAAGCCCAGGTTTTTGAGGCGGAA
GAGGACGGTGGGGGGTTTTAGAGGTGTGGGGGGACGCCGTGGTGGGTTTTCCGCCTGGTGGTGGC
CCGTGGACGCGACCCCTTCGGACTCCAGGGCAAAAATGCCGTTCCTGCAGTGAGCTGGTAGGGCC
GCGGTGCCTGGCAGACACCACCTGGAAACTGGTGCGATGGCGGGC
Right flanking sequence: Indices 111401 -- 111900
CTATGGGTGCCTATGGGTGAGACTGAGCTACGGGTGGGTCAGAGCTACGGTGGGACGGTGCTACA
GATCTGGTCCTATTGTCTAGGCTGTGGCTCAGGGCCGGGTTTTAGGTTTTCCGACGTAAGTGTGC
CTGAGCAGGGTCCATCTCAAAATCTCTTTCTTTTGGCTATTTCGGGACATACGTTGCGTGGTACT
CCGCGGCTGCTGCCAGCTTGCTCATGCGGTTGCCAAGCCTGGCCGTATGATGATGCAAGGCGCGT
GGGCCGCGTCAGTGGTGAACACCGGACCCACCAACTACAGGGGCGTTATCGCCGTACAATGGCAC
AGATGCAGATGCCCCTCAGGCACGACGGGCAAACCGACACTGCTCACACTACTCTCTGGGTTTTT
GTGGCGGGTTTAGGTTCGATGGAAGCGGACCCCCGCCTTACATGCAACCACTATGTGCTGGTTGG
GACGCCAATGGCGTGCTGGCCATCACGTCGGCTATGACGTGCGGG
Found at i:112089 original size:16 final size:16
Alignment explanation
Indices: 112068--112116 Score: 71
Period size: 16 Copynumber: 3.0 Consensus size: 16
112058 GTCGTAGACA
112068 GATGGAGTGGATGGTG
1 GATGGAGTGGATGGTG
*
112084 GATGGAGTGGATGAGTA
1 GATGGAGTGGATG-GTG
*
112101 GATGGTGTGGATGGTG
1 GATGGAGTGGATGGTG
112117 TGAGATGGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
16 15 0.52
17 14 0.48
ACGTcount: A:0.20, C:0.00, G:0.53, T:0.27
Consensus pattern (16 bp):
GATGGAGTGGATGGTG
Left flanking sequence: Indices 111568 -- 112067
TATTTCGGGACATACGTTGCGTGGTACTCCGCGGCTGCTGCCAGCTTGCTCATGCGGTTGCCAAG
CCTGGCCGTATGATGATGCAAGGCGCGTGGGCCGCGTCAGTGGTGAACACCGGACCCACCAACTA
CAGGGGCGTTATCGCCGTACAATGGCACAGATGCAGATGCCCCTCAGGCACGACGGGCAAACCGA
CACTGCTCACACTACTCTCTGGGTTTTTGTGGCGGGTTTAGGTTCGATGGAAGCGGACCCCCGCC
TTACATGCAACCACTATGTGCTGGTTGGGACGCCAATGGCGTGCTGGCCATCACGTCGGCTATGA
CGTGCGGGAGTGCCGATCCGACATGGACGCTGTTCCCAGTCGGCAACCAGACGACCCGTCTGCGG
CGAGCTGCAGCTTCTGTCCAGGGGTAGTGGAATTGCCACATTGGTGAGGTGCATATCACATGTGG
ACGGGAATGGAAGCAGGGGCGGTAAGAAGGAGCCCGTCGTAGACA
Right flanking sequence: Indices 112117 -- 112616
TGAGATGGTGTGAGATGAGTGGGGATGTGGATTGTCTTGTAGTGGGGGGGTTTTATTGTTTCAGA
TTTTCCTTGGTTTTGGAAACAATCGGCAAAATGGTGATAAAATGAGTGAAACAGACATACCGACC
ACAGATCAGCGGTTCGAGTTCGACCATTGTCACAACAATAGTCTTTGTTTTACGTAGTAACGCCC
CCGTGGGAGGCTCAGCCGCGTGGCTCCACCTGCCGTGGCCCCGTGACTGTCCCTACAGATGAGAA
AATACGCCGAAACGGTGCTCTGGTTCGGCGAGGTAAGGACATGCGATGAGCACGCATCTGGAGTT
GCCCCCTCGTTTCGGCTGCAACCCATGAACGTCCTGTCAGCTATTTTTAGCGGAGCATAGCCGCG
TCATTAGGCCACAATCAGGAGGTTACATTGGTGTTTGGGGCGCGCAGGGCTCAAGGCCGCTGAAA
CACGATATGAAGCAGGTGACGACGATCTGGTCTTACAGCTTGATA
Found at i:112093 original size:9 final size:9
Alignment explanation
Indices: 112068--112138 Score: 60
Period size: 9 Copynumber: 8.1 Consensus size: 9
112058 GTCGTAGACA
112068 GATGGAGTG
1 GATGGAGTG
112077 GAT-G-GTG
1 GATGGAGTG
112084 GATGGAGTG
1 GATGGAGTG
*
112093 GAT-GAGTA
1 GATGGAGTG
*
112101 GATGGTGTG
1 GATGGAGTG
*
112110 GATGGTGTG
1 GATGGAGTG
*
112119 AGATGGTGTG
1 -GATGGAGTG
112129 AGAT-GAGTG
1 -GATGGAGTG
112138 G
1 G
112139 GGATGTGGAT
Statistics
Matches: 54, Mismatches: 4, Indels: 9
0.81 0.06 0.13
Matches are distributed among these distances:
7 6 0.11
8 10 0.19
9 25 0.46
10 13 0.24
ACGTcount: A:0.21, C:0.00, G:0.52, T:0.27
Consensus pattern (9 bp):
GATGGAGTG
Left flanking sequence: Indices 111568 -- 112067
TATTTCGGGACATACGTTGCGTGGTACTCCGCGGCTGCTGCCAGCTTGCTCATGCGGTTGCCAAG
CCTGGCCGTATGATGATGCAAGGCGCGTGGGCCGCGTCAGTGGTGAACACCGGACCCACCAACTA
CAGGGGCGTTATCGCCGTACAATGGCACAGATGCAGATGCCCCTCAGGCACGACGGGCAAACCGA
CACTGCTCACACTACTCTCTGGGTTTTTGTGGCGGGTTTAGGTTCGATGGAAGCGGACCCCCGCC
TTACATGCAACCACTATGTGCTGGTTGGGACGCCAATGGCGTGCTGGCCATCACGTCGGCTATGA
CGTGCGGGAGTGCCGATCCGACATGGACGCTGTTCCCAGTCGGCAACCAGACGACCCGTCTGCGG
CGAGCTGCAGCTTCTGTCCAGGGGTAGTGGAATTGCCACATTGGTGAGGTGCATATCACATGTGG
ACGGGAATGGAAGCAGGGGCGGTAAGAAGGAGCCCGTCGTAGACA
Right flanking sequence: Indices 112139 -- 112638
GGATGTGGATTGTCTTGTAGTGGGGGGGTTTTATTGTTTCAGATTTTCCTTGGTTTTGGAAACAA
TCGGCAAAATGGTGATAAAATGAGTGAAACAGACATACCGACCACAGATCAGCGGTTCGAGTTCG
ACCATTGTCACAACAATAGTCTTTGTTTTACGTAGTAACGCCCCCGTGGGAGGCTCAGCCGCGTG
GCTCCACCTGCCGTGGCCCCGTGACTGTCCCTACAGATGAGAAAATACGCCGAAACGGTGCTCTG
GTTCGGCGAGGTAAGGACATGCGATGAGCACGCATCTGGAGTTGCCCCCTCGTTTCGGCTGCAAC
CCATGAACGTCCTGTCAGCTATTTTTAGCGGAGCATAGCCGCGTCATTAGGCCACAATCAGGAGG
TTACATTGGTGTTTGGGGCGCGCAGGGCTCAAGGCCGCTGAAACACGATATGAAGCAGGTGACGA
CGATCTGGTCTTACAGCTTGATAGCTTCACAGACTCGCAGACTCC
Found at i:112125 original size:10 final size:10
Alignment explanation
Indices: 112100--112133 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
112090 GTGGATGAGT
112100 AGATGGTGTG
1 AGATGGTGTG
112110 -GATGGTGTG
1 AGATGGTGTG
112119 AGATGGTGTG
1 AGATGGTGTG
112129 AGATG
1 AGATG
112134 AGTGGGGATG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 9 0.39
10 14 0.61
ACGTcount: A:0.21, C:0.00, G:0.50, T:0.29
Consensus pattern (10 bp):
AGATGGTGTG
Left flanking sequence: Indices 111600 -- 112099
GGCTGCTGCCAGCTTGCTCATGCGGTTGCCAAGCCTGGCCGTATGATGATGCAAGGCGCGTGGGC
CGCGTCAGTGGTGAACACCGGACCCACCAACTACAGGGGCGTTATCGCCGTACAATGGCACAGAT
GCAGATGCCCCTCAGGCACGACGGGCAAACCGACACTGCTCACACTACTCTCTGGGTTTTTGTGG
CGGGTTTAGGTTCGATGGAAGCGGACCCCCGCCTTACATGCAACCACTATGTGCTGGTTGGGACG
CCAATGGCGTGCTGGCCATCACGTCGGCTATGACGTGCGGGAGTGCCGATCCGACATGGACGCTG
TTCCCAGTCGGCAACCAGACGACCCGTCTGCGGCGAGCTGCAGCTTCTGTCCAGGGGTAGTGGAA
TTGCCACATTGGTGAGGTGCATATCACATGTGGACGGGAATGGAAGCAGGGGCGGTAAGAAGGAG
CCCGTCGTAGACAGATGGAGTGGATGGTGGATGGAGTGGATGAGT
Right flanking sequence: Indices 112134 -- 112633
AGTGGGGATGTGGATTGTCTTGTAGTGGGGGGGTTTTATTGTTTCAGATTTTCCTTGGTTTTGGA
AACAATCGGCAAAATGGTGATAAAATGAGTGAAACAGACATACCGACCACAGATCAGCGGTTCGA
GTTCGACCATTGTCACAACAATAGTCTTTGTTTTACGTAGTAACGCCCCCGTGGGAGGCTCAGCC
GCGTGGCTCCACCTGCCGTGGCCCCGTGACTGTCCCTACAGATGAGAAAATACGCCGAAACGGTG
CTCTGGTTCGGCGAGGTAAGGACATGCGATGAGCACGCATCTGGAGTTGCCCCCTCGTTTCGGCT
GCAACCCATGAACGTCCTGTCAGCTATTTTTAGCGGAGCATAGCCGCGTCATTAGGCCACAATCA
GGAGGTTACATTGGTGTTTGGGGCGCGCAGGGCTCAAGGCCGCTGAAACACGATATGAAGCAGGT
GACGACGATCTGGTCTTACAGCTTGATAGCTTCACAGACTCGCAG
Found at i:142830 original size:20 final size:20
Alignment explanation
Indices: 142805--142842 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
142795 AACCACTTAA
*
142805 TGTTATGACGGTCGATTGAT
1 TGTTATGACGGTAGATTGAT
142825 TGTTATGACGGTAGATTG
1 TGTTATGACGGTAGATTG
142843 CCATAGTAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.08, G:0.32, T:0.39
Consensus pattern (20 bp):
TGTTATGACGGTAGATTGAT
Left flanking sequence: Indices 142305 -- 142804
GCCAAGTCAACGTGAACCTTGCGTACGTTAACATTGACAGTGGGTTCCAACAATGCAAGCAACCC
CTCCTCAATCAATAACGCTAACACAGCGCCGTAACGCTTGTCGTCCTTCACAAGTTTCTCCAACT
CTTTGGCGGCGTCCTCAAACAAATCCTCCAACACCTCTTCCTTTGTGCCAAGAATGCGTAATCTC
GTCTTGTTTGCCAAAGTTGACTTTTGGATTTGTTGAGCAAGCAGAGCCTTTTTGAGCTTCTGTTG
GTAACTGGCATCAATTGCTGCCAGCTCGCTGCGGACAATCAGTGCCTTCTCAATTTCATATTCCT
CATCTGCTTTGAGCCGAATCTCCTTCGCCTTTTCTTCGGCCTCCTTCTTGATAAAGCCTTGCATC
TTGGCAAGCTCCAGCTTGACCTACATTAAGTTAGTAATTGAAATATTGGTGGGATTGGGGAACTT
AGGCCAATAAGGTGTACTTGAATGCAAGTCAACCGAACCACTTAA
Right flanking sequence: Indices 142843 -- 143342
CCATAGTAGCAATCATTGATAAGGGTGTGTTGACCACGTCCCTCGAAACAAGAGAATCGGAGCTT
GGATTCCACGAATCAACCATACACAATCGTGTCTCTTGGTTCAATTGACCTCAAATGATGCGATA
GGTGGTGGTGTTCTGTGAATGACGACCCCGCTCTTGATACTGTGACAGTGCCAATCGACCAGACA
AAGGACTATGGATCCTTCCGTCAGTATGATGCCTCCCCTTTGCAATAACTTACCTGTTCGTCTGA
CAAACTCATGATTGATATGGGAAGTTAGACAGTGGTGGATAGATTAATTGCGATAAACGTTGACT
GTACACGAGTGCGTGCGCGCCCCCAGAGACCAACTGTGGACGGCTGCGTGCGAAAGACGGTAGCG
CACTTTTGCTGCAAAATTGAAGTGTGGTTGAGTCCAACCTACTGATGTGGTGGTAGTACGACCAC
ATGAAGTTATAAACTTATTTTATACTCCCTCCATAGTAATATATA
Found at i:146377 original size:12 final size:12
Alignment explanation
Indices: 146360--146479 Score: 89
Period size: 12 Copynumber: 9.5 Consensus size: 12
146350 GCTGGTTCCA
146360 GTGTTGGCTCTG
1 GTGTTGGCTCTG
146372 GTGTTGGCTCTG
1 GTGTTGGCTCTG
146384 GTGTTGGCTCTG
1 GTGTTGGCTCTG
* *
146396 GTGCTGG-TGCCG
1 GTGTTGGCT-CTG
146408 GTGTTGGCGCCGGTTCTG
1 GTGTT-G-G-C---TCTG
*
146426 GTGTTGGTTCTG
1 GTGTTGGCTCTG
*
146438 GTGTTGGTTCTG
1 GTGTTGGCTCTG
* *
146450 GTGTTGGTTCCG
1 GTGTTGGCTCTG
* * *
146462 GAGTTGGTTCCG
1 GTGTTGGCTCTG
146474 GTGTTG
1 GTGTTG
146480 CCGGTTCGCA
Statistics
Matches: 92, Mismatches: 8, Indels: 16
0.79 0.07 0.14
Matches are distributed among these distances:
11 1 0.01
12 79 0.86
13 1 0.01
14 1 0.01
16 1 0.01
17 1 0.01
18 7 0.08
19 1 0.01
ACGTcount: A:0.01, C:0.16, G:0.43, T:0.40
Consensus pattern (12 bp):
GTGTTGGCTCTG
Left flanking sequence: Indices 145860 -- 146359
GTCAATTGCAATGCATAGAGTACGTCTGGATTTTTTCCGAACCAATTCTGTCTCTGTGAAGGTGG
TGACTCGGTGGTGTAGCGGGGAATGTGGAAGCAATCACCTTGGAGTTAGCGGCGGATCACAGCAA
AGCAACCTAACCTGGATTCGACAACCGCAATGTAGCGGAATTTGTGGGAGTATATAAGTAGCAAA
GACATTGTCAGTCGAATCCATAATCATGTCTGCCTACAATCAAGAAACTGGTACGGAAGACTTGA
CTGATATTCCTGGCGCCAACAGATTGCCTAAACATCAACAGCAAACCCCTGGTGCTCCCCCTAAG
GGTCCCAAGGGTGGTGCTCCGTTGGGTTCGACCGGTCAAGACGTCGGTGGGTCCACTAGTGGCCC
TGGTCAGGCTGGTGACATCCAAGGCCTCGCTAAGCAGGCTGGGATCACCGATGAGGGCCACAGAG
ACACCAACGCCACTGGTGCTGGTGTTGGCAACACTGCTGGTTCCA
Right flanking sequence: Indices 146480 -- 146979
CCGGTTCGCAAGGTCTTGGTCACTCCACCTCCGGGGTGAATGCTGGTCAATCGACTCCCTACGAG
GGTGCTGGTGTTGGTTCTGCTACCAACGTTGGTGGCGGTCAACGTGCCTATGACAACATGACCAC
TGGTCCTGATGGGACTGTCGAGTCTTCTAGATTCAGACAGGAGTACCCTAACGCGGAAGCTCGTG
ACCACCGTCATGAAGGTATCGTCAGAGAGCACAAGCTTGATGCTGAGCGCAAGTTTGAGCATGCT
AGAGAGGAGCTTCGTGGCGACCGCTCCCACGCTCAACACGATCGTGGTGTCGAGGGTGTTACACG
CGGCGTTGACGACGTCAACTTGAACCGTGAGCACGGTTCTCACGGCCACGCTGGTGAGTACGCTG
CTGGTGGCGCCGCTGCTGGCGCTGGTGCTGCTGGTCTTGCTTCTCACGAGCACCACAAGCACTCT
GGTGTTGGTTCTACTGGCCACGGTGTTGGTTCTACTGGTCAATAT
Found at i:146387 original size:24 final size:24
Alignment explanation
Indices: 146352--146479 Score: 112
Period size: 24 Copynumber: 5.1 Consensus size: 24
146342 GCAACACTGC
*
146352 TGGTTCCAGTGTTGGCTCTGGTGT
1 TGGTTCCGGTGTTGGCTCTGGTGT
* * *
146376 TGGCTCTGGTGTTGGCTCTGGTGC
1 TGGTTCCGGTGTTGGCTCTGGTGT
*
146400 TGGTGCCGGTGTTGGCGCCGGTTCTGGTGT
1 TGGTTCCGGTGTT-G-G-C---TCTGGTGT
* *
146430 TGGTTCTGGTGTTGGTTCTGGTGT
1 TGGTTCCGGTGTTGGCTCTGGTGT
* * *
146454 TGGTTCCGGAGTTGGTTCCGGTGT
1 TGGTTCCGGTGTTGGCTCTGGTGT
146478 TG
1 TG
146480 CCGGTTCGCA
Statistics
Matches: 84, Mismatches: 14, Indels: 12
0.76 0.13 0.11
Matches are distributed among these distances:
24 61 0.73
25 1 0.01
26 1 0.01
27 1 0.01
28 1 0.01
29 1 0.01
30 18 0.21
ACGTcount: A:0.02, C:0.16, G:0.42, T:0.40
Consensus pattern (24 bp):
TGGTTCCGGTGTTGGCTCTGGTGT
Left flanking sequence: Indices 145852 -- 146351
TCAATTGGGTCAATTGCAATGCATAGAGTACGTCTGGATTTTTTCCGAACCAATTCTGTCTCTGT
GAAGGTGGTGACTCGGTGGTGTAGCGGGGAATGTGGAAGCAATCACCTTGGAGTTAGCGGCGGAT
CACAGCAAAGCAACCTAACCTGGATTCGACAACCGCAATGTAGCGGAATTTGTGGGAGTATATAA
GTAGCAAAGACATTGTCAGTCGAATCCATAATCATGTCTGCCTACAATCAAGAAACTGGTACGGA
AGACTTGACTGATATTCCTGGCGCCAACAGATTGCCTAAACATCAACAGCAAACCCCTGGTGCTC
CCCCTAAGGGTCCCAAGGGTGGTGCTCCGTTGGGTTCGACCGGTCAAGACGTCGGTGGGTCCACT
AGTGGCCCTGGTCAGGCTGGTGACATCCAAGGCCTCGCTAAGCAGGCTGGGATCACCGATGAGGG
CCACAGAGACACCAACGCCACTGGTGCTGGTGTTGGCAACACTGC
Right flanking sequence: Indices 146480 -- 146979
CCGGTTCGCAAGGTCTTGGTCACTCCACCTCCGGGGTGAATGCTGGTCAATCGACTCCCTACGAG
GGTGCTGGTGTTGGTTCTGCTACCAACGTTGGTGGCGGTCAACGTGCCTATGACAACATGACCAC
TGGTCCTGATGGGACTGTCGAGTCTTCTAGATTCAGACAGGAGTACCCTAACGCGGAAGCTCGTG
ACCACCGTCATGAAGGTATCGTCAGAGAGCACAAGCTTGATGCTGAGCGCAAGTTTGAGCATGCT
AGAGAGGAGCTTCGTGGCGACCGCTCCCACGCTCAACACGATCGTGGTGTCGAGGGTGTTACACG
CGGCGTTGACGACGTCAACTTGAACCGTGAGCACGGTTCTCACGGCCACGCTGGTGAGTACGCTG
CTGGTGGCGCCGCTGCTGGCGCTGGTGCTGCTGGTCTTGCTTCTCACGAGCACCACAAGCACTCT
GGTGTTGGTTCTACTGGCCACGGTGTTGGTTCTACTGGTCAATAT
Found at i:146459 original size:36 final size:36
Alignment explanation
Indices: 146360--146479 Score: 105
Period size: 36 Copynumber: 3.2 Consensus size: 36
146350 GCTGGTTCCA
* * *
146360 GTGTTGGCTCTGGTGTTGGCTCTGGTGTTGGCTCTG
1 GTGTTGGTTCTGGTGTTGGTTCTGGTGTTGGTTCTG
* * *
146396 GTGCTGGTGCCGGTGTTGGCGCCGGTTCTGGTGTTGGTTCTG
1 GTGTTGGTTCTGGTGTT------GGTTCTGGTGTTGGTTCTG
* * *
146438 GTGTTGGTTCTGGTGTTGGTTCCGGAGTTGGTTCCG
1 GTGTTGGTTCTGGTGTTGGTTCTGGTGTTGGTTCTG
146474 GTGTTG
1 GTGTTG
146480 CCGGTTCGCA
Statistics
Matches: 66, Mismatches: 12, Indels: 12
0.73 0.13 0.13
Matches are distributed among these distances:
36 35 0.53
42 31 0.47
ACGTcount: A:0.01, C:0.16, G:0.43, T:0.40
Consensus pattern (36 bp):
GTGTTGGTTCTGGTGTTGGTTCTGGTGTTGGTTCTG
Left flanking sequence: Indices 145860 -- 146359
GTCAATTGCAATGCATAGAGTACGTCTGGATTTTTTCCGAACCAATTCTGTCTCTGTGAAGGTGG
TGACTCGGTGGTGTAGCGGGGAATGTGGAAGCAATCACCTTGGAGTTAGCGGCGGATCACAGCAA
AGCAACCTAACCTGGATTCGACAACCGCAATGTAGCGGAATTTGTGGGAGTATATAAGTAGCAAA
GACATTGTCAGTCGAATCCATAATCATGTCTGCCTACAATCAAGAAACTGGTACGGAAGACTTGA
CTGATATTCCTGGCGCCAACAGATTGCCTAAACATCAACAGCAAACCCCTGGTGCTCCCCCTAAG
GGTCCCAAGGGTGGTGCTCCGTTGGGTTCGACCGGTCAAGACGTCGGTGGGTCCACTAGTGGCCC
TGGTCAGGCTGGTGACATCCAAGGCCTCGCTAAGCAGGCTGGGATCACCGATGAGGGCCACAGAG
ACACCAACGCCACTGGTGCTGGTGTTGGCAACACTGCTGGTTCCA
Right flanking sequence: Indices 146480 -- 146979
CCGGTTCGCAAGGTCTTGGTCACTCCACCTCCGGGGTGAATGCTGGTCAATCGACTCCCTACGAG
GGTGCTGGTGTTGGTTCTGCTACCAACGTTGGTGGCGGTCAACGTGCCTATGACAACATGACCAC
TGGTCCTGATGGGACTGTCGAGTCTTCTAGATTCAGACAGGAGTACCCTAACGCGGAAGCTCGTG
ACCACCGTCATGAAGGTATCGTCAGAGAGCACAAGCTTGATGCTGAGCGCAAGTTTGAGCATGCT
AGAGAGGAGCTTCGTGGCGACCGCTCCCACGCTCAACACGATCGTGGTGTCGAGGGTGTTACACG
CGGCGTTGACGACGTCAACTTGAACCGTGAGCACGGTTCTCACGGCCACGCTGGTGAGTACGCTG
CTGGTGGCGCCGCTGCTGGCGCTGGTGCTGCTGGTCTTGCTTCTCACGAGCACCACAAGCACTCT
GGTGTTGGTTCTACTGGCCACGGTGTTGGTTCTACTGGTCAATAT
Found at i:147317 original size:21 final size:21
Alignment explanation
Indices: 147293--147356 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 21
147283 TCCACTGGTA
147293 CTACTGGCCACGGTGTCGGTT
1 CTACTGGCCACGGTGTCGGTT
* *
147314 CTA-----C-CGGTGTTGGCT
1 CTACTGGCCACGGTGTCGGTT
*
147329 CCACTGGCCACGGTGTCGGTT
1 CTACTGGCCACGGTGTCGGTT
147350 CTACTGG
1 CTACTGG
147357 TGTTGGTTCG
Statistics
Matches: 31, Mismatches: 6, Indels: 12
0.63 0.12 0.24
Matches are distributed among these distances:
15 11 0.35
16 1 0.03
20 1 0.03
21 18 0.58
ACGTcount: A:0.09, C:0.30, G:0.33, T:0.28
Consensus pattern (21 bp):
CTACTGGCCACGGTGTCGGTT
Left flanking sequence: Indices 146793 -- 147292
GGGTGTTACACGCGGCGTTGACGACGTCAACTTGAACCGTGAGCACGGTTCTCACGGCCACGCTG
GTGAGTACGCTGCTGGTGGCGCCGCTGCTGGCGCTGGTGCTGCTGGTCTTGCTTCTCACGAGCAC
CACAAGCACTCTGGTGTTGGTTCTACTGGCCACGGTGTTGGTTCTACTGGTCAATATGGTAAGAC
CGAGGGTAACTTGGGTCACTCCAACTACCCCACCTCTACGACTGGCCATGGATCCGCGGGCGTTG
ACTCTCGTGGCACCAACCAGTACAGCGCTCCTTCTAACAAGGACGACCCGTCTCTTATGGACAAG
GTCAAGGAGAAGGTTGGTTTGGGGGACTCCTCGAACACTTCTTCGGGCCACACTGGCACTGGCCA
TGGCTCTCACGCTGGCGAGTACGCCGCGGGTGGTGCCGCTGCCGGTGCTGGTGGTGCTGGTCTCG
CTGCCCACGAGCACAACAAGCACTCTGGTCTTGGTTCCACTGGTA
Right flanking sequence: Indices 147357 -- 147856
TGTTGGTTCGACTGGTGTTGGTTCCACCGGTCACGGTGTTGGCTCTACTGGCCACCACTCTTCCG
CTGGCCAGCGTTACGAGAACGCTAAGGACCAAGAGAAGCTTTACGGCGACTCTAACCAGGGCGGT
CTTGCCGGTAAGGCCGGTGCCGCTGCTGGTGCCATGGGCTCTGGTCACCACTCTGGTCACACCGG
TGGTACTTACGGTGACACTTCGAACACTGTGTATGGTGACCGCTCTGGTGCTTTGGGCGCCCCTG
GTACTGCTTCTGGTAACACTTCTGGATTCAGAGACACCACCGGCCACGGTACTCACGGCTCGCAC
GCCGGTGAGTACGCCGCTGGCGGTGCTGCCGCTGGGGCCGGTGCTGCTGGTCTTGCCTCTCACGA
GCACAACAAGCACACTGGTCTTGGTTCCACTGGTACTACTGGCCACGGTGTTGGTTCCACTGGTG
TTGGTTCCACTGGCCACGGTGTTGGTTCTACTGGTGTTGGTTCGA
Found at i:147342 original size:36 final size:36
Alignment explanation
Indices: 147295--147371 Score: 127
Period size: 36 Copynumber: 2.1 Consensus size: 36
147285 CACTGGTACT
147295 ACTGGCCACGGTGTCGGTTCTACCGGTGTTGGCTCC
1 ACTGGCCACGGTGTCGGTTCTACCGGTGTTGGCTCC
* * *
147331 ACTGGCCACGGTGTCGGTTCTACTGGTGTTGGTTCG
1 ACTGGCCACGGTGTCGGTTCTACCGGTGTTGGCTCC
147367 ACTGG
1 ACTGG
147372 TGTTGGTTCC
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.09, C:0.26, G:0.35, T:0.30
Consensus pattern (36 bp):
ACTGGCCACGGTGTCGGTTCTACCGGTGTTGGCTCC
Left flanking sequence: Indices 146795 -- 147294
GTGTTACACGCGGCGTTGACGACGTCAACTTGAACCGTGAGCACGGTTCTCACGGCCACGCTGGT
GAGTACGCTGCTGGTGGCGCCGCTGCTGGCGCTGGTGCTGCTGGTCTTGCTTCTCACGAGCACCA
CAAGCACTCTGGTGTTGGTTCTACTGGCCACGGTGTTGGTTCTACTGGTCAATATGGTAAGACCG
AGGGTAACTTGGGTCACTCCAACTACCCCACCTCTACGACTGGCCATGGATCCGCGGGCGTTGAC
TCTCGTGGCACCAACCAGTACAGCGCTCCTTCTAACAAGGACGACCCGTCTCTTATGGACAAGGT
CAAGGAGAAGGTTGGTTTGGGGGACTCCTCGAACACTTCTTCGGGCCACACTGGCACTGGCCATG
GCTCTCACGCTGGCGAGTACGCCGCGGGTGGTGCCGCTGCCGGTGCTGGTGGTGCTGGTCTCGCT
GCCCACGAGCACAACAAGCACTCTGGTCTTGGTTCCACTGGTACT
Right flanking sequence: Indices 147372 -- 147871
TGTTGGTTCCACCGGTCACGGTGTTGGCTCTACTGGCCACCACTCTTCCGCTGGCCAGCGTTACG
AGAACGCTAAGGACCAAGAGAAGCTTTACGGCGACTCTAACCAGGGCGGTCTTGCCGGTAAGGCC
GGTGCCGCTGCTGGTGCCATGGGCTCTGGTCACCACTCTGGTCACACCGGTGGTACTTACGGTGA
CACTTCGAACACTGTGTATGGTGACCGCTCTGGTGCTTTGGGCGCCCCTGGTACTGCTTCTGGTA
ACACTTCTGGATTCAGAGACACCACCGGCCACGGTACTCACGGCTCGCACGCCGGTGAGTACGCC
GCTGGCGGTGCTGCCGCTGGGGCCGGTGCTGCTGGTCTTGCCTCTCACGAGCACAACAAGCACAC
TGGTCTTGGTTCCACTGGTACTACTGGCCACGGTGTTGGTTCCACTGGTGTTGGTTCCACTGGCC
ACGGTGTTGGTTCTACTGGTGTTGGTTCGACTGGTGTTGGTTCTA
Found at i:147364 original size:15 final size:15
Alignment explanation
Indices: 147340--147380 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
147330 CACTGGCCAC
* *
147340 GGTGTCGGTTCTACT
1 GGTGTTGGTTCGACT
147355 GGTGTTGGTTCGACT
1 GGTGTTGGTTCGACT
147370 GGTGTTGGTTC
1 GGTGTTGGTTC
147381 CACCGGTCAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.05, C:0.15, G:0.39, T:0.41
Consensus pattern (15 bp):
GGTGTTGGTTCGACT
Left flanking sequence: Indices 146840 -- 147339
GTTCTCACGGCCACGCTGGTGAGTACGCTGCTGGTGGCGCCGCTGCTGGCGCTGGTGCTGCTGGT
CTTGCTTCTCACGAGCACCACAAGCACTCTGGTGTTGGTTCTACTGGCCACGGTGTTGGTTCTAC
TGGTCAATATGGTAAGACCGAGGGTAACTTGGGTCACTCCAACTACCCCACCTCTACGACTGGCC
ATGGATCCGCGGGCGTTGACTCTCGTGGCACCAACCAGTACAGCGCTCCTTCTAACAAGGACGAC
CCGTCTCTTATGGACAAGGTCAAGGAGAAGGTTGGTTTGGGGGACTCCTCGAACACTTCTTCGGG
CCACACTGGCACTGGCCATGGCTCTCACGCTGGCGAGTACGCCGCGGGTGGTGCCGCTGCCGGTG
CTGGTGGTGCTGGTCTCGCTGCCCACGAGCACAACAAGCACTCTGGTCTTGGTTCCACTGGTACT
ACTGGCCACGGTGTCGGTTCTACCGGTGTTGGCTCCACTGGCCAC
Right flanking sequence: Indices 147381 -- 147880
CACCGGTCACGGTGTTGGCTCTACTGGCCACCACTCTTCCGCTGGCCAGCGTTACGAGAACGCTA
AGGACCAAGAGAAGCTTTACGGCGACTCTAACCAGGGCGGTCTTGCCGGTAAGGCCGGTGCCGCT
GCTGGTGCCATGGGCTCTGGTCACCACTCTGGTCACACCGGTGGTACTTACGGTGACACTTCGAA
CACTGTGTATGGTGACCGCTCTGGTGCTTTGGGCGCCCCTGGTACTGCTTCTGGTAACACTTCTG
GATTCAGAGACACCACCGGCCACGGTACTCACGGCTCGCACGCCGGTGAGTACGCCGCTGGCGGT
GCTGCCGCTGGGGCCGGTGCTGCTGGTCTTGCCTCTCACGAGCACAACAAGCACACTGGTCTTGG
TTCCACTGGTACTACTGGCCACGGTGTTGGTTCCACTGGTGTTGGTTCCACTGGCCACGGTGTTG
GTTCTACTGGTGTTGGTTCGACTGGTGTTGGTTCTACTGGCCATG
Found at i:147383 original size:51 final size:51
Alignment explanation
Indices: 147304--147407 Score: 136
Period size: 51 Copynumber: 2.0 Consensus size: 51
147294 TACTGGCCAC
* * *
147304 GGTGTCGGTTCTACCGGTGTTGGCTCCACTGGCCACGGTGTCGGTTCTACT
1 GGTGTCGGTTCGACCGGTGTTGGCTCCACCGGCCACGGTGTCGGCTCTACT
* * * * *
147355 GGTGTTGGTTCGACTGGTGTTGGTTCCACCGGTCACGGTGTTGGCTCTACT
1 GGTGTCGGTTCGACCGGTGTTGGCTCCACCGGCCACGGTGTCGGCTCTACT
147406 GG
1 GG
147408 CCACCACTCT
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
51 45 1.00
ACGTcount: A:0.08, C:0.24, G:0.36, T:0.33
Consensus pattern (51 bp):
GGTGTCGGTTCGACCGGTGTTGGCTCCACCGGCCACGGTGTCGGCTCTACT
Left flanking sequence: Indices 146804 -- 147303
GCGGCGTTGACGACGTCAACTTGAACCGTGAGCACGGTTCTCACGGCCACGCTGGTGAGTACGCT
GCTGGTGGCGCCGCTGCTGGCGCTGGTGCTGCTGGTCTTGCTTCTCACGAGCACCACAAGCACTC
TGGTGTTGGTTCTACTGGCCACGGTGTTGGTTCTACTGGTCAATATGGTAAGACCGAGGGTAACT
TGGGTCACTCCAACTACCCCACCTCTACGACTGGCCATGGATCCGCGGGCGTTGACTCTCGTGGC
ACCAACCAGTACAGCGCTCCTTCTAACAAGGACGACCCGTCTCTTATGGACAAGGTCAAGGAGAA
GGTTGGTTTGGGGGACTCCTCGAACACTTCTTCGGGCCACACTGGCACTGGCCATGGCTCTCACG
CTGGCGAGTACGCCGCGGGTGGTGCCGCTGCCGGTGCTGGTGGTGCTGGTCTCGCTGCCCACGAG
CACAACAAGCACTCTGGTCTTGGTTCCACTGGTACTACTGGCCAC
Right flanking sequence: Indices 147408 -- 147907
CCACCACTCTTCCGCTGGCCAGCGTTACGAGAACGCTAAGGACCAAGAGAAGCTTTACGGCGACT
CTAACCAGGGCGGTCTTGCCGGTAAGGCCGGTGCCGCTGCTGGTGCCATGGGCTCTGGTCACCAC
TCTGGTCACACCGGTGGTACTTACGGTGACACTTCGAACACTGTGTATGGTGACCGCTCTGGTGC
TTTGGGCGCCCCTGGTACTGCTTCTGGTAACACTTCTGGATTCAGAGACACCACCGGCCACGGTA
CTCACGGCTCGCACGCCGGTGAGTACGCCGCTGGCGGTGCTGCCGCTGGGGCCGGTGCTGCTGGT
CTTGCCTCTCACGAGCACAACAAGCACACTGGTCTTGGTTCCACTGGTACTACTGGCCACGGTGT
TGGTTCCACTGGTGTTGGTTCCACTGGCCACGGTGTTGGTTCTACTGGTGTTGGTTCGACTGGTG
TTGGTTCTACTGGCCATGGTGTCGGCAACACTGGCGCCTACGGCA
Found at i:147779 original size:15 final size:15
Alignment explanation
Indices: 147759--147824 Score: 66
Period size: 15 Copynumber: 4.4 Consensus size: 15
147749 ACAACAAGCA
147759 CACTGGTCTTGGTTC
1 CACTGGTCTTGGTTC
147774 CACTGGTACTACTGG--C
1 CACTGGT-CT--TGGTTC
*
147790 CAC-GGTGTTGGTTC
1 CACTGGTCTTGGTTC
*
147804 CACTGGTGTTGGTTC
1 CACTGGTCTTGGTTC
147819 CACTGG
1 CACTGG
147825 CCACGGTGTT
Statistics
Matches: 44, Mismatches: 1, Indels: 12
0.77 0.02 0.21
Matches are distributed among these distances:
12 3 0.07
14 5 0.11
15 27 0.61
16 6 0.14
18 3 0.07
ACGTcount: A:0.11, C:0.26, G:0.30, T:0.33
Consensus pattern (15 bp):
CACTGGTCTTGGTTC
Left flanking sequence: Indices 147259 -- 147758
CACAACAAGCACTCTGGTCTTGGTTCCACTGGTACTACTGGCCACGGTGTCGGTTCTACCGGTGT
TGGCTCCACTGGCCACGGTGTCGGTTCTACTGGTGTTGGTTCGACTGGTGTTGGTTCCACCGGTC
ACGGTGTTGGCTCTACTGGCCACCACTCTTCCGCTGGCCAGCGTTACGAGAACGCTAAGGACCAA
GAGAAGCTTTACGGCGACTCTAACCAGGGCGGTCTTGCCGGTAAGGCCGGTGCCGCTGCTGGTGC
CATGGGCTCTGGTCACCACTCTGGTCACACCGGTGGTACTTACGGTGACACTTCGAACACTGTGT
ATGGTGACCGCTCTGGTGCTTTGGGCGCCCCTGGTACTGCTTCTGGTAACACTTCTGGATTCAGA
GACACCACCGGCCACGGTACTCACGGCTCGCACGCCGGTGAGTACGCCGCTGGCGGTGCTGCCGC
TGGGGCCGGTGCTGCTGGTCTTGCCTCTCACGAGCACAACAAGCA
Right flanking sequence: Indices 147825 -- 148324
CCACGGTGTTGGTTCTACTGGTGTTGGTTCGACTGGTGTTGGTTCTACTGGCCATGGTGTCGGCA
ACACTGGCGCCTACGGCAACACTGGGTCCACTGGTTACGACGACTCTAAAACTGGTCGCTTCAAG
GAGGCCATGGGTCAGGAACACAACCACGGGAACGCTCAGCCTCATGGTATGACTGAAAAGGCCGG
TGCCAAGGCTGGTGAGAAGAGCCTGCGGTTTGAAGAGGCTAAGAACCAACAGCAGATGCAGGGTG
CCTCGAACCCTACTGGCAAGTCCGGTAAGGCTGGTGCTGCCGCTGGCGCTATGGCTAATGCTGGT
CCTAACGCTGGCTCTGGATCCTCCGGTATTGGTGGTCCCGAATCTGCGCAGGCTTCTTCGGCCAC
CGACAAGTTCAAGATTGCCAAGGAGGAGCAGAAGGAGTTTGGTGAGACCAACCAAGGCGGTGTTG
CTGGTAAGGTTGGCGCGGCTGTTGGTGCTTTGAGTGGTAACAAGT
Found at i:147808 original size:21 final size:21
Alignment explanation
Indices: 147784--147845 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
147774 CACTGGTACT
147784 ACTGGCCACGGTGTTGGTTCC
1 ACTGGCCACGGTGTTGGTTCC
147805 ACT------GGTGTTGGTTCC
1 ACTGGCCACGGTGTTGGTTCC
*
147820 ACTGGCCACGGTGTTGGTTCT
1 ACTGGCCACGGTGTTGGTTCC
147841 ACTGG
1 ACTGG
147846 TGTTGGTTCG
Statistics
Matches: 34, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
15 15 0.44
21 19 0.56
ACGTcount: A:0.10, C:0.24, G:0.34, T:0.32
Consensus pattern (21 bp):
ACTGGCCACGGTGTTGGTTCC
Left flanking sequence: Indices 147284 -- 147783
CCACTGGTACTACTGGCCACGGTGTCGGTTCTACCGGTGTTGGCTCCACTGGCCACGGTGTCGGT
TCTACTGGTGTTGGTTCGACTGGTGTTGGTTCCACCGGTCACGGTGTTGGCTCTACTGGCCACCA
CTCTTCCGCTGGCCAGCGTTACGAGAACGCTAAGGACCAAGAGAAGCTTTACGGCGACTCTAACC
AGGGCGGTCTTGCCGGTAAGGCCGGTGCCGCTGCTGGTGCCATGGGCTCTGGTCACCACTCTGGT
CACACCGGTGGTACTTACGGTGACACTTCGAACACTGTGTATGGTGACCGCTCTGGTGCTTTGGG
CGCCCCTGGTACTGCTTCTGGTAACACTTCTGGATTCAGAGACACCACCGGCCACGGTACTCACG
GCTCGCACGCCGGTGAGTACGCCGCTGGCGGTGCTGCCGCTGGGGCCGGTGCTGCTGGTCTTGCC
TCTCACGAGCACAACAAGCACACTGGTCTTGGTTCCACTGGTACT
Right flanking sequence: Indices 147846 -- 148345
TGTTGGTTCGACTGGTGTTGGTTCTACTGGCCATGGTGTCGGCAACACTGGCGCCTACGGCAACA
CTGGGTCCACTGGTTACGACGACTCTAAAACTGGTCGCTTCAAGGAGGCCATGGGTCAGGAACAC
AACCACGGGAACGCTCAGCCTCATGGTATGACTGAAAAGGCCGGTGCCAAGGCTGGTGAGAAGAG
CCTGCGGTTTGAAGAGGCTAAGAACCAACAGCAGATGCAGGGTGCCTCGAACCCTACTGGCAAGT
CCGGTAAGGCTGGTGCTGCCGCTGGCGCTATGGCTAATGCTGGTCCTAACGCTGGCTCTGGATCC
TCCGGTATTGGTGGTCCCGAATCTGCGCAGGCTTCTTCGGCCACCGACAAGTTCAAGATTGCCAA
GGAGGAGCAGAAGGAGTTTGGTGAGACCAACCAAGGCGGTGTTGCTGGTAAGGTTGGCGCGGCTG
TTGGTGCTTTGAGTGGTAACAAGTCGAGCTCTTCTGACACCAACC
Found at i:147831 original size:36 final size:36
Alignment explanation
Indices: 147784--147860 Score: 136
Period size: 36 Copynumber: 2.1 Consensus size: 36
147774 CACTGGTACT
147784 ACTGGCCACGGTGTTGGTTCCACTGGTGTTGGTTCC
1 ACTGGCCACGGTGTTGGTTCCACTGGTGTTGGTTCC
* *
147820 ACTGGCCACGGTGTTGGTTCTACTGGTGTTGGTTCG
1 ACTGGCCACGGTGTTGGTTCCACTGGTGTTGGTTCC
147856 ACTGG
1 ACTGG
147861 TGTTGGTTCT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.09, C:0.22, G:0.35, T:0.34
Consensus pattern (36 bp):
ACTGGCCACGGTGTTGGTTCCACTGGTGTTGGTTCC
Left flanking sequence: Indices 147284 -- 147783
CCACTGGTACTACTGGCCACGGTGTCGGTTCTACCGGTGTTGGCTCCACTGGCCACGGTGTCGGT
TCTACTGGTGTTGGTTCGACTGGTGTTGGTTCCACCGGTCACGGTGTTGGCTCTACTGGCCACCA
CTCTTCCGCTGGCCAGCGTTACGAGAACGCTAAGGACCAAGAGAAGCTTTACGGCGACTCTAACC
AGGGCGGTCTTGCCGGTAAGGCCGGTGCCGCTGCTGGTGCCATGGGCTCTGGTCACCACTCTGGT
CACACCGGTGGTACTTACGGTGACACTTCGAACACTGTGTATGGTGACCGCTCTGGTGCTTTGGG
CGCCCCTGGTACTGCTTCTGGTAACACTTCTGGATTCAGAGACACCACCGGCCACGGTACTCACG
GCTCGCACGCCGGTGAGTACGCCGCTGGCGGTGCTGCCGCTGGGGCCGGTGCTGCTGGTCTTGCC
TCTCACGAGCACAACAAGCACACTGGTCTTGGTTCCACTGGTACT
Right flanking sequence: Indices 147861 -- 148360
TGTTGGTTCTACTGGCCATGGTGTCGGCAACACTGGCGCCTACGGCAACACTGGGTCCACTGGTT
ACGACGACTCTAAAACTGGTCGCTTCAAGGAGGCCATGGGTCAGGAACACAACCACGGGAACGCT
CAGCCTCATGGTATGACTGAAAAGGCCGGTGCCAAGGCTGGTGAGAAGAGCCTGCGGTTTGAAGA
GGCTAAGAACCAACAGCAGATGCAGGGTGCCTCGAACCCTACTGGCAAGTCCGGTAAGGCTGGTG
CTGCCGCTGGCGCTATGGCTAATGCTGGTCCTAACGCTGGCTCTGGATCCTCCGGTATTGGTGGT
CCCGAATCTGCGCAGGCTTCTTCGGCCACCGACAAGTTCAAGATTGCCAAGGAGGAGCAGAAGGA
GTTTGGTGAGACCAACCAAGGCGGTGTTGCTGGTAAGGTTGGCGCGGCTGTTGGTGCTTTGAGTG
GTAACAAGTCGAGCTCTTCTGACACCAACCGTGGCACTCATGGTG
Found at i:147849 original size:15 final size:15
Alignment explanation
Indices: 147829--147875 Score: 85
Period size: 15 Copynumber: 3.1 Consensus size: 15
147819 CACTGGCCAC
147829 GGTGTTGGTTCTACT
1 GGTGTTGGTTCTACT
*
147844 GGTGTTGGTTCGACT
1 GGTGTTGGTTCTACT
147859 GGTGTTGGTTCTACT
1 GGTGTTGGTTCTACT
147874 GG
1 GG
147876 CCATGGTGTC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.06, C:0.13, G:0.38, T:0.43
Consensus pattern (15 bp):
GGTGTTGGTTCTACT
Left flanking sequence: Indices 147329 -- 147828
CCACTGGCCACGGTGTCGGTTCTACTGGTGTTGGTTCGACTGGTGTTGGTTCCACCGGTCACGGT
GTTGGCTCTACTGGCCACCACTCTTCCGCTGGCCAGCGTTACGAGAACGCTAAGGACCAAGAGAA
GCTTTACGGCGACTCTAACCAGGGCGGTCTTGCCGGTAAGGCCGGTGCCGCTGCTGGTGCCATGG
GCTCTGGTCACCACTCTGGTCACACCGGTGGTACTTACGGTGACACTTCGAACACTGTGTATGGT
GACCGCTCTGGTGCTTTGGGCGCCCCTGGTACTGCTTCTGGTAACACTTCTGGATTCAGAGACAC
CACCGGCCACGGTACTCACGGCTCGCACGCCGGTGAGTACGCCGCTGGCGGTGCTGCCGCTGGGG
CCGGTGCTGCTGGTCTTGCCTCTCACGAGCACAACAAGCACACTGGTCTTGGTTCCACTGGTACT
ACTGGCCACGGTGTTGGTTCCACTGGTGTTGGTTCCACTGGCCAC
Right flanking sequence: Indices 147876 -- 148375
CCATGGTGTCGGCAACACTGGCGCCTACGGCAACACTGGGTCCACTGGTTACGACGACTCTAAAA
CTGGTCGCTTCAAGGAGGCCATGGGTCAGGAACACAACCACGGGAACGCTCAGCCTCATGGTATG
ACTGAAAAGGCCGGTGCCAAGGCTGGTGAGAAGAGCCTGCGGTTTGAAGAGGCTAAGAACCAACA
GCAGATGCAGGGTGCCTCGAACCCTACTGGCAAGTCCGGTAAGGCTGGTGCTGCCGCTGGCGCTA
TGGCTAATGCTGGTCCTAACGCTGGCTCTGGATCCTCCGGTATTGGTGGTCCCGAATCTGCGCAG
GCTTCTTCGGCCACCGACAAGTTCAAGATTGCCAAGGAGGAGCAGAAGGAGTTTGGTGAGACCAA
CCAAGGCGGTGTTGCTGGTAAGGTTGGCGCGGCTGTTGGTGCTTTGAGTGGTAACAAGTCGAGCT
CTTCTGACACCAACCGTGGCACTCATGGTGCCACTGGTACTCACG
Found at i:147896 original size:51 final size:51
Alignment explanation
Indices: 147793--147896 Score: 138
Period size: 51 Copynumber: 2.0 Consensus size: 51
147783 TACTGGCCAC
* **
147793 GGTGTTGGTTCCACTGGTGTTGGTTCCACTGGCCACGGTGTTGGTTCTACT
1 GGTGTTGGTTCCACTGGTGTTGGTTCCACTGGCCACGGTGTCGGAACTACT
* * *
147844 GGTGTTGGTTCGACTGGTGTTGGTTCTACTGGCCATGGTGTCGGCAAC-ACT
1 GGTGTTGGTTCCACTGGTGTTGGTTCCACTGGCCACGGTGTCGG-AACTACT
147895 GG
1 GG
147897 CGCCTACGGC
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
51 45 0.98
52 1 0.02
ACGTcount: A:0.10, C:0.20, G:0.36, T:0.35
Consensus pattern (51 bp):
GGTGTTGGTTCCACTGGTGTTGGTTCCACTGGCCACGGTGTCGGAACTACT
Left flanking sequence: Indices 147293 -- 147792
CTACTGGCCACGGTGTCGGTTCTACCGGTGTTGGCTCCACTGGCCACGGTGTCGGTTCTACTGGT
GTTGGTTCGACTGGTGTTGGTTCCACCGGTCACGGTGTTGGCTCTACTGGCCACCACTCTTCCGC
TGGCCAGCGTTACGAGAACGCTAAGGACCAAGAGAAGCTTTACGGCGACTCTAACCAGGGCGGTC
TTGCCGGTAAGGCCGGTGCCGCTGCTGGTGCCATGGGCTCTGGTCACCACTCTGGTCACACCGGT
GGTACTTACGGTGACACTTCGAACACTGTGTATGGTGACCGCTCTGGTGCTTTGGGCGCCCCTGG
TACTGCTTCTGGTAACACTTCTGGATTCAGAGACACCACCGGCCACGGTACTCACGGCTCGCACG
CCGGTGAGTACGCCGCTGGCGGTGCTGCCGCTGGGGCCGGTGCTGCTGGTCTTGCCTCTCACGAG
CACAACAAGCACACTGGTCTTGGTTCCACTGGTACTACTGGCCAC
Right flanking sequence: Indices 147897 -- 148396
CGCCTACGGCAACACTGGGTCCACTGGTTACGACGACTCTAAAACTGGTCGCTTCAAGGAGGCCA
TGGGTCAGGAACACAACCACGGGAACGCTCAGCCTCATGGTATGACTGAAAAGGCCGGTGCCAAG
GCTGGTGAGAAGAGCCTGCGGTTTGAAGAGGCTAAGAACCAACAGCAGATGCAGGGTGCCTCGAA
CCCTACTGGCAAGTCCGGTAAGGCTGGTGCTGCCGCTGGCGCTATGGCTAATGCTGGTCCTAACG
CTGGCTCTGGATCCTCCGGTATTGGTGGTCCCGAATCTGCGCAGGCTTCTTCGGCCACCGACAAG
TTCAAGATTGCCAAGGAGGAGCAGAAGGAGTTTGGTGAGACCAACCAAGGCGGTGTTGCTGGTAA
GGTTGGCGCGGCTGTTGGTGCTTTGAGTGGTAACAAGTCGAGCTCTTCTGACACCAACCGTGGCA
CTCATGGTGCCACTGGTACTCACGGCGCTACCGGCACCCATGGTA
Found at i:148414 original size:18 final size:18
Alignment explanation
Indices: 148363--148433 Score: 88
Period size: 18 Copynumber: 3.9 Consensus size: 18
148353 TCATGGTGCC
**
148363 ACTGGTACTCACGGCGCT
1 ACTGGTACTCACGGTACT
* * * *
148381 ACCGGCACCCATGGTACT
1 ACTGGTACTCACGGTACT
148399 ACTGGTACTCACGGTACT
1 ACTGGTACTCACGGTACT
148417 ACTGGTACTCACGGTAC
1 ACTGGTACTCACGGTAC
148434 CCACGGTACC
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 43 1.00
ACGTcount: A:0.21, C:0.32, G:0.24, T:0.23
Consensus pattern (18 bp):
ACTGGTACTCACGGTACT
Left flanking sequence: Indices 147863 -- 148362
TTGGTTCTACTGGCCATGGTGTCGGCAACACTGGCGCCTACGGCAACACTGGGTCCACTGGTTAC
GACGACTCTAAAACTGGTCGCTTCAAGGAGGCCATGGGTCAGGAACACAACCACGGGAACGCTCA
GCCTCATGGTATGACTGAAAAGGCCGGTGCCAAGGCTGGTGAGAAGAGCCTGCGGTTTGAAGAGG
CTAAGAACCAACAGCAGATGCAGGGTGCCTCGAACCCTACTGGCAAGTCCGGTAAGGCTGGTGCT
GCCGCTGGCGCTATGGCTAATGCTGGTCCTAACGCTGGCTCTGGATCCTCCGGTATTGGTGGTCC
CGAATCTGCGCAGGCTTCTTCGGCCACCGACAAGTTCAAGATTGCCAAGGAGGAGCAGAAGGAGT
TTGGTGAGACCAACCAAGGCGGTGTTGCTGGTAAGGTTGGCGCGGCTGTTGGTGCTTTGAGTGGT
AACAAGTCGAGCTCTTCTGACACCAACCGTGGCACTCATGGTGCC
Right flanking sequence: Indices 148434 -- 148933
CCACGGTACCCACGGTTCCCACGCTGGCGAGTACGCCGCGGGTGGTGCCGCTGCCGGTGCTGGTG
GTGCTGGTCTTGCTTCCCACGAGCACAACAAGCACTCTGGTCTTGGTTCCACTGGTACTACTGGC
CACGGTGTCGGTTCTACCGGTGTTGGCTCCACTGGTGTTGGTTCCACCGGTCACGGTGTTGGCTC
TACTGGCCACCACTCTTCCGCTGGCCAGCGTTACGAGAACGCTAAGGACCAAGAGAAGCTTTACG
GCGACTCTAACCAGGGCGGTCTTGCCGGTAAGGCCGGTGCTGCTGCCGGTGCCATGGGCTCTGGT
CACCACTCTGGGCACCACTCTGGTACCACTGGTGTTGGTTCCACCGGTGTGAGCTCCACTGGTGA
GTACGCCCCTTCCGGCGCTGGTGGTGTTGGCTCTACTGGTCGCGGTGTTGGTTCCACTGGTGTTG
GTTCCACTGGTGTTGGTTCCACTGGTGTTGGTTCCACTGGTGTTG
Found at i:148432 original size:9 final size:9
Alignment explanation
Indices: 148393--148449 Score: 64
Period size: 9 Copynumber: 6.3 Consensus size: 9
148383 CGGCACCCAT
148393 GGTACT-AC
1 GGTACTCAC
148401 TGGTACTCAC
1 -GGTACTCAC
148411 GGTACT-AC
1 GGTACTCAC
148419 TGGTACTCAC
1 -GGTACTCAC
*
148429 GGTACCCAC
1 GGTACTCAC
*
148438 GGTACCCAC
1 GGTACTCAC
148447 GGT
1 GGT
148450 TCCCACGCTG
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
8 2 0.05
9 38 0.86
10 4 0.09
ACGTcount: A:0.21, C:0.32, G:0.25, T:0.23
Consensus pattern (9 bp):
GGTACTCAC
Left flanking sequence: Indices 147893 -- 148392
CTGGCGCCTACGGCAACACTGGGTCCACTGGTTACGACGACTCTAAAACTGGTCGCTTCAAGGAG
GCCATGGGTCAGGAACACAACCACGGGAACGCTCAGCCTCATGGTATGACTGAAAAGGCCGGTGC
CAAGGCTGGTGAGAAGAGCCTGCGGTTTGAAGAGGCTAAGAACCAACAGCAGATGCAGGGTGCCT
CGAACCCTACTGGCAAGTCCGGTAAGGCTGGTGCTGCCGCTGGCGCTATGGCTAATGCTGGTCCT
AACGCTGGCTCTGGATCCTCCGGTATTGGTGGTCCCGAATCTGCGCAGGCTTCTTCGGCCACCGA
CAAGTTCAAGATTGCCAAGGAGGAGCAGAAGGAGTTTGGTGAGACCAACCAAGGCGGTGTTGCTG
GTAAGGTTGGCGCGGCTGTTGGTGCTTTGAGTGGTAACAAGTCGAGCTCTTCTGACACCAACCGT
GGCACTCATGGTGCCACTGGTACTCACGGCGCTACCGGCACCCAT
Right flanking sequence: Indices 148450 -- 148949
TCCCACGCTGGCGAGTACGCCGCGGGTGGTGCCGCTGCCGGTGCTGGTGGTGCTGGTCTTGCTTC
CCACGAGCACAACAAGCACTCTGGTCTTGGTTCCACTGGTACTACTGGCCACGGTGTCGGTTCTA
CCGGTGTTGGCTCCACTGGTGTTGGTTCCACCGGTCACGGTGTTGGCTCTACTGGCCACCACTCT
TCCGCTGGCCAGCGTTACGAGAACGCTAAGGACCAAGAGAAGCTTTACGGCGACTCTAACCAGGG
CGGTCTTGCCGGTAAGGCCGGTGCTGCTGCCGGTGCCATGGGCTCTGGTCACCACTCTGGGCACC
ACTCTGGTACCACTGGTGTTGGTTCCACCGGTGTGAGCTCCACTGGTGAGTACGCCCCTTCCGGC
GCTGGTGGTGTTGGCTCTACTGGTCGCGGTGTTGGTTCCACTGGTGTTGGTTCCACTGGTGTTGG
TTCCACTGGTGTTGGTTCCACTGGTGTTGGTTCCACTGGTGTTGG
Found at i:148441 original size:18 final size:18
Alignment explanation
Indices: 148402--148456 Score: 67
Period size: 18 Copynumber: 3.1 Consensus size: 18
148392 TGGTACTACT
*
148402 GGTACTCACGGTA-CTAC
1 GGTACTCACGGTACCCAC
148419 TGGTACTCACGGTACCCAC
1 -GGTACTCACGGTACCCAC
* *
148438 GGTACCCACGGTTCCCAC
1 GGTACTCACGGTACCCAC
148456 G
1 G
148457 CTGGCGAGTA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
18 30 0.91
19 3 0.09
ACGTcount: A:0.20, C:0.36, G:0.24, T:0.20
Consensus pattern (18 bp):
GGTACTCACGGTACCCAC
Left flanking sequence: Indices 147902 -- 148401
ACGGCAACACTGGGTCCACTGGTTACGACGACTCTAAAACTGGTCGCTTCAAGGAGGCCATGGGT
CAGGAACACAACCACGGGAACGCTCAGCCTCATGGTATGACTGAAAAGGCCGGTGCCAAGGCTGG
TGAGAAGAGCCTGCGGTTTGAAGAGGCTAAGAACCAACAGCAGATGCAGGGTGCCTCGAACCCTA
CTGGCAAGTCCGGTAAGGCTGGTGCTGCCGCTGGCGCTATGGCTAATGCTGGTCCTAACGCTGGC
TCTGGATCCTCCGGTATTGGTGGTCCCGAATCTGCGCAGGCTTCTTCGGCCACCGACAAGTTCAA
GATTGCCAAGGAGGAGCAGAAGGAGTTTGGTGAGACCAACCAAGGCGGTGTTGCTGGTAAGGTTG
GCGCGGCTGTTGGTGCTTTGAGTGGTAACAAGTCGAGCTCTTCTGACACCAACCGTGGCACTCAT
GGTGCCACTGGTACTCACGGCGCTACCGGCACCCATGGTACTACT
Right flanking sequence: Indices 148457 -- 148956
CTGGCGAGTACGCCGCGGGTGGTGCCGCTGCCGGTGCTGGTGGTGCTGGTCTTGCTTCCCACGAG
CACAACAAGCACTCTGGTCTTGGTTCCACTGGTACTACTGGCCACGGTGTCGGTTCTACCGGTGT
TGGCTCCACTGGTGTTGGTTCCACCGGTCACGGTGTTGGCTCTACTGGCCACCACTCTTCCGCTG
GCCAGCGTTACGAGAACGCTAAGGACCAAGAGAAGCTTTACGGCGACTCTAACCAGGGCGGTCTT
GCCGGTAAGGCCGGTGCTGCTGCCGGTGCCATGGGCTCTGGTCACCACTCTGGGCACCACTCTGG
TACCACTGGTGTTGGTTCCACCGGTGTGAGCTCCACTGGTGAGTACGCCCCTTCCGGCGCTGGTG
GTGTTGGCTCTACTGGTCGCGGTGTTGGTTCCACTGGTGTTGGTTCCACTGGTGTTGGTTCCACT
GGTGTTGGTTCCACTGGTGTTGGTTCCACTGGTGTTGGTTCCACT
Found at i:148454 original size:9 final size:9
Alignment explanation
Indices: 148402--148456 Score: 58
Period size: 9 Copynumber: 6.1 Consensus size: 9
148392 TGGTACTACT
*
148402 GGTACTCAC
1 GGTACCCAC
*
148411 GGTA-CTAC
1 GGTACCCAC
*
148419 TGGTACTCAC
1 -GGTACCCAC
148429 GGTACCCAC
1 GGTACCCAC
148438 GGTACCCAC
1 GGTACCCAC
*
148447 GGTTCCCAC
1 GGTACCCAC
148456 G
1 G
148457 CTGGCGAGTA
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
8 2 0.05
9 34 0.89
10 2 0.05
ACGTcount: A:0.20, C:0.36, G:0.24, T:0.20
Consensus pattern (9 bp):
GGTACCCAC
Left flanking sequence: Indices 147902 -- 148401
ACGGCAACACTGGGTCCACTGGTTACGACGACTCTAAAACTGGTCGCTTCAAGGAGGCCATGGGT
CAGGAACACAACCACGGGAACGCTCAGCCTCATGGTATGACTGAAAAGGCCGGTGCCAAGGCTGG
TGAGAAGAGCCTGCGGTTTGAAGAGGCTAAGAACCAACAGCAGATGCAGGGTGCCTCGAACCCTA
CTGGCAAGTCCGGTAAGGCTGGTGCTGCCGCTGGCGCTATGGCTAATGCTGGTCCTAACGCTGGC
TCTGGATCCTCCGGTATTGGTGGTCCCGAATCTGCGCAGGCTTCTTCGGCCACCGACAAGTTCAA
GATTGCCAAGGAGGAGCAGAAGGAGTTTGGTGAGACCAACCAAGGCGGTGTTGCTGGTAAGGTTG
GCGCGGCTGTTGGTGCTTTGAGTGGTAACAAGTCGAGCTCTTCTGACACCAACCGTGGCACTCAT
GGTGCCACTGGTACTCACGGCGCTACCGGCACCCATGGTACTACT
Right flanking sequence: Indices 148457 -- 148956
CTGGCGAGTACGCCGCGGGTGGTGCCGCTGCCGGTGCTGGTGGTGCTGGTCTTGCTTCCCACGAG
CACAACAAGCACTCTGGTCTTGGTTCCACTGGTACTACTGGCCACGGTGTCGGTTCTACCGGTGT
TGGCTCCACTGGTGTTGGTTCCACCGGTCACGGTGTTGGCTCTACTGGCCACCACTCTTCCGCTG
GCCAGCGTTACGAGAACGCTAAGGACCAAGAGAAGCTTTACGGCGACTCTAACCAGGGCGGTCTT
GCCGGTAAGGCCGGTGCTGCTGCCGGTGCCATGGGCTCTGGTCACCACTCTGGGCACCACTCTGG
TACCACTGGTGTTGGTTCCACCGGTGTGAGCTCCACTGGTGAGTACGCCCCTTCCGGCGCTGGTG
GTGTTGGCTCTACTGGTCGCGGTGTTGGTTCCACTGGTGTTGGTTCCACTGGTGTTGGTTCCACT
GGTGTTGGTTCCACTGGTGTTGGTTCCACTGGTGTTGGTTCCACT
Found at i:148586 original size:15 final size:15
Alignment explanation
Indices: 148566--148614 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
148556 CTACTGGCCA
* *
148566 CGGTGTCGGTTCTAC
1 CGGTGTTGGTTCCAC
*
148581 CGGTGTTGGCTCCAC
1 CGGTGTTGGTTCCAC
*
148596 TGGTGTTGGTTCCAC
1 CGGTGTTGGTTCCAC
148611 CGGT
1 CGGT
148615 CACGGTGTTG
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.06, C:0.27, G:0.35, T:0.33
Consensus pattern (15 bp):
CGGTGTTGGTTCCAC
Left flanking sequence: Indices 148066 -- 148565
CAACAGCAGATGCAGGGTGCCTCGAACCCTACTGGCAAGTCCGGTAAGGCTGGTGCTGCCGCTGG
CGCTATGGCTAATGCTGGTCCTAACGCTGGCTCTGGATCCTCCGGTATTGGTGGTCCCGAATCTG
CGCAGGCTTCTTCGGCCACCGACAAGTTCAAGATTGCCAAGGAGGAGCAGAAGGAGTTTGGTGAG
ACCAACCAAGGCGGTGTTGCTGGTAAGGTTGGCGCGGCTGTTGGTGCTTTGAGTGGTAACAAGTC
GAGCTCTTCTGACACCAACCGTGGCACTCATGGTGCCACTGGTACTCACGGCGCTACCGGCACCC
ATGGTACTACTGGTACTCACGGTACTACTGGTACTCACGGTACCCACGGTACCCACGGTTCCCAC
GCTGGCGAGTACGCCGCGGGTGGTGCCGCTGCCGGTGCTGGTGGTGCTGGTCTTGCTTCCCACGA
GCACAACAAGCACTCTGGTCTTGGTTCCACTGGTACTACTGGCCA
Right flanking sequence: Indices 148615 -- 149114
CACGGTGTTGGCTCTACTGGCCACCACTCTTCCGCTGGCCAGCGTTACGAGAACGCTAAGGACCA
AGAGAAGCTTTACGGCGACTCTAACCAGGGCGGTCTTGCCGGTAAGGCCGGTGCTGCTGCCGGTG
CCATGGGCTCTGGTCACCACTCTGGGCACCACTCTGGTACCACTGGTGTTGGTTCCACCGGTGTG
AGCTCCACTGGTGAGTACGCCCCTTCCGGCGCTGGTGGTGTTGGCTCTACTGGTCGCGGTGTTGG
TTCCACTGGTGTTGGTTCCACTGGTGTTGGTTCCACTGGTGTTGGTTCCACTGGTGTTGGTTCCA
CTGGTGTTGGTTCCACTGGTGTTGGTTCCACTGGTGTTGGCTCCACTGGCCACGGTGTTGGCTCC
ACTGGTGTTGGTTCCACCGGTCACGGTGTTGGCTCTACTGGCCACCACTCTTCCGCTGGCCAGCG
TTACGAGAACGCTAAGGACCAAGAGAAGCTTTACGGCGACTCTAA
Found at i:148769 original size:12 final size:12
Alignment explanation
Indices: 148752--148788 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
148742 GTGCCATGGG
148752 CTCTGGTCACCA
1 CTCTGGTCACCA
*
148764 CTCTGGGCACCA
1 CTCTGGTCACCA
148776 CTCTGGT-ACCA
1 CTCTGGTCACCA
148787 CT
1 CT
148789 GGTGTTGGTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
11 6 0.26
12 17 0.74
ACGTcount: A:0.16, C:0.41, G:0.19, T:0.24
Consensus pattern (12 bp):
CTCTGGTCACCA
Left flanking sequence: Indices 148252 -- 148751
TTTGGTGAGACCAACCAAGGCGGTGTTGCTGGTAAGGTTGGCGCGGCTGTTGGTGCTTTGAGTGG
TAACAAGTCGAGCTCTTCTGACACCAACCGTGGCACTCATGGTGCCACTGGTACTCACGGCGCTA
CCGGCACCCATGGTACTACTGGTACTCACGGTACTACTGGTACTCACGGTACCCACGGTACCCAC
GGTTCCCACGCTGGCGAGTACGCCGCGGGTGGTGCCGCTGCCGGTGCTGGTGGTGCTGGTCTTGC
TTCCCACGAGCACAACAAGCACTCTGGTCTTGGTTCCACTGGTACTACTGGCCACGGTGTCGGTT
CTACCGGTGTTGGCTCCACTGGTGTTGGTTCCACCGGTCACGGTGTTGGCTCTACTGGCCACCAC
TCTTCCGCTGGCCAGCGTTACGAGAACGCTAAGGACCAAGAGAAGCTTTACGGCGACTCTAACCA
GGGCGGTCTTGCCGGTAAGGCCGGTGCTGCTGCCGGTGCCATGGG
Right flanking sequence: Indices 148789 -- 149288
GGTGTTGGTTCCACCGGTGTGAGCTCCACTGGTGAGTACGCCCCTTCCGGCGCTGGTGGTGTTGG
CTCTACTGGTCGCGGTGTTGGTTCCACTGGTGTTGGTTCCACTGGTGTTGGTTCCACTGGTGTTG
GTTCCACTGGTGTTGGTTCCACTGGTGTTGGTTCCACTGGTGTTGGTTCCACTGGTGTTGGCTCC
ACTGGCCACGGTGTTGGCTCCACTGGTGTTGGTTCCACCGGTCACGGTGTTGGCTCTACTGGCCA
CCACTCTTCCGCTGGCCAGCGTTACGAGAACGCTAAGGACCAAGAGAAGCTTTACGGCGACTCTA
ACCAGGGCGGTCTTGCCGGTAAGGCTGGTGCTGCTGCTGGGGCCATGGGCTCTGGTCACCACTCT
GGTACCACTGGTACCACTGGCCACGGTGTTGGTTCCACCGGTGTTGGTTCCGCTGGTCACGGTGT
CGGGTCCACCGGTCACGGTGTTGGCTCGACTGGTCACAGCACTTC
Found at i:148887 original size:15 final size:15
Alignment explanation
Indices: 148867--149021 Score: 238
Period size: 15 Copynumber: 9.9 Consensus size: 15
148857 TACTGGTCGC
148867 GGTGTTGGTTCCACT
1 GGTGTTGGTTCCACT
148882 GGTGTTGGTTCCACT
1 GGTGTTGGTTCCACT
148897 GGTGTTGGTTCCACT
1 GGTGTTGGTTCCACT
148912 GGTGTTGGTTCCACT
1 GGTGTTGGTTCCACT
148927 GGTGTTGGTTCCACT
1 GGTGTTGGTTCCACT
148942 GGTGTTGGTTCCACT
1 GGTGTTGGTTCCACT
148957 GGTGTTGGTTCCACT
1 GGTGTTGGTTCCACT
*
148972 GGTGTTGGCTCCACT
1 GGTGTTGGTTCCACT
*
148987 GGCCACGGTGTTGGCTCCACT
1 ------GGTGTTGGTTCCACT
149008 GGTGTTGGTTCCAC
1 GGTGTTGGTTCCAC
149022 CGGTCACGGT
Statistics
Matches: 132, Mismatches: 2, Indels: 12
0.90 0.01 0.08
Matches are distributed among these distances:
15 117 0.89
21 15 0.11
ACGTcount: A:0.07, C:0.23, G:0.34, T:0.37
Consensus pattern (15 bp):
GGTGTTGGTTCCACT
Left flanking sequence: Indices 148367 -- 148866
GTACTCACGGCGCTACCGGCACCCATGGTACTACTGGTACTCACGGTACTACTGGTACTCACGGT
ACCCACGGTACCCACGGTTCCCACGCTGGCGAGTACGCCGCGGGTGGTGCCGCTGCCGGTGCTGG
TGGTGCTGGTCTTGCTTCCCACGAGCACAACAAGCACTCTGGTCTTGGTTCCACTGGTACTACTG
GCCACGGTGTCGGTTCTACCGGTGTTGGCTCCACTGGTGTTGGTTCCACCGGTCACGGTGTTGGC
TCTACTGGCCACCACTCTTCCGCTGGCCAGCGTTACGAGAACGCTAAGGACCAAGAGAAGCTTTA
CGGCGACTCTAACCAGGGCGGTCTTGCCGGTAAGGCCGGTGCTGCTGCCGGTGCCATGGGCTCTG
GTCACCACTCTGGGCACCACTCTGGTACCACTGGTGTTGGTTCCACCGGTGTGAGCTCCACTGGT
GAGTACGCCCCTTCCGGCGCTGGTGGTGTTGGCTCTACTGGTCGC
Right flanking sequence: Indices 149022 -- 149521
CGGTCACGGTGTTGGCTCTACTGGCCACCACTCTTCCGCTGGCCAGCGTTACGAGAACGCTAAGG
ACCAAGAGAAGCTTTACGGCGACTCTAACCAGGGCGGTCTTGCCGGTAAGGCTGGTGCTGCTGCT
GGGGCCATGGGCTCTGGTCACCACTCTGGTACCACTGGTACCACTGGCCACGGTGTTGGTTCCAC
CGGTGTTGGTTCCGCTGGTCACGGTGTCGGGTCCACCGGTCACGGTGTTGGCTCGACTGGTCACA
GCACTTCCGCTGGCCTGCGCTACGAGGCTGCTAAGGACCAAGAGAAGCTTTACGGCGACTCTAAC
CAGGGCGGTCTTGCCGGTAAGGCTGGTGCCGCTGCTGGTGCTGTGGGCTCTGGTCACCACTCTGG
GACTACTGGAACCACCGGTACCACTGGTCACGGTGTTGGTGCCACTGGTACTACCGGTCATGGTG
TTGGTGCCACTGGTGCCACTGGTCGTGACAACGTGAACGTGCCTG
Found at i:148996 original size:21 final size:21
Alignment explanation
Indices: 148967--149049 Score: 79
Period size: 21 Copynumber: 4.2 Consensus size: 21
148957 GGTGTTGGTT
148967 CCACTGGTGTTGGCTCCACTGG
1 CCAC-GGTGTTGGCTCCACTGG
148989 CCACGGTGTTGGCTCCACT--
1 CCACGGTGTTGGCTCCACTGG
* *
149008 ----GGTGTTGGTTCCACCGG
1 CCACGGTGTTGGCTCCACTGG
* *
149025 TCACGGTGTTGGCTCTACTGG
1 CCACGGTGTTGGCTCCACTGG
149046 CCAC
1 CCAC
149050 CACTCTTCCG
Statistics
Matches: 49, Mismatches: 6, Indels: 13
0.72 0.09 0.19
Matches are distributed among these distances:
15 13 0.27
21 32 0.65
22 4 0.08
ACGTcount: A:0.10, C:0.31, G:0.31, T:0.28
Consensus pattern (21 bp):
CCACGGTGTTGGCTCCACTGG
Left flanking sequence: Indices 148467 -- 148966
CGCCGCGGGTGGTGCCGCTGCCGGTGCTGGTGGTGCTGGTCTTGCTTCCCACGAGCACAACAAGC
ACTCTGGTCTTGGTTCCACTGGTACTACTGGCCACGGTGTCGGTTCTACCGGTGTTGGCTCCACT
GGTGTTGGTTCCACCGGTCACGGTGTTGGCTCTACTGGCCACCACTCTTCCGCTGGCCAGCGTTA
CGAGAACGCTAAGGACCAAGAGAAGCTTTACGGCGACTCTAACCAGGGCGGTCTTGCCGGTAAGG
CCGGTGCTGCTGCCGGTGCCATGGGCTCTGGTCACCACTCTGGGCACCACTCTGGTACCACTGGT
GTTGGTTCCACCGGTGTGAGCTCCACTGGTGAGTACGCCCCTTCCGGCGCTGGTGGTGTTGGCTC
TACTGGTCGCGGTGTTGGTTCCACTGGTGTTGGTTCCACTGGTGTTGGTTCCACTGGTGTTGGTT
CCACTGGTGTTGGTTCCACTGGTGTTGGTTCCACTGGTGTTGGTT
Right flanking sequence: Indices 149050 -- 149549
CACTCTTCCGCTGGCCAGCGTTACGAGAACGCTAAGGACCAAGAGAAGCTTTACGGCGACTCTAA
CCAGGGCGGTCTTGCCGGTAAGGCTGGTGCTGCTGCTGGGGCCATGGGCTCTGGTCACCACTCTG
GTACCACTGGTACCACTGGCCACGGTGTTGGTTCCACCGGTGTTGGTTCCGCTGGTCACGGTGTC
GGGTCCACCGGTCACGGTGTTGGCTCGACTGGTCACAGCACTTCCGCTGGCCTGCGCTACGAGGC
TGCTAAGGACCAAGAGAAGCTTTACGGCGACTCTAACCAGGGCGGTCTTGCCGGTAAGGCTGGTG
CCGCTGCTGGTGCTGTGGGCTCTGGTCACCACTCTGGGACTACTGGAACCACCGGTACCACTGGT
CACGGTGTTGGTGCCACTGGTACTACCGGTCATGGTGTTGGTGCCACTGGTGCCACTGGTCGTGA
CAACGTGAACGTGCCTGGCTCGTACGAGTCTTCCGGTACCCACGG
Found at i:149216 original size:21 final size:21
Alignment explanation
Indices: 149187--149280 Score: 74
Period size: 21 Copynumber: 4.8 Consensus size: 21
149177 CTGGTACCAC
* *
149187 TGGTACCACTGGCCACGGTGT
1 TGGTTCCACTGGTCACGGTGT
149208 TGGTTCCAC----C--GGTGT
1 TGGTTCCACTGGTCACGGTGT
*
149223 TGGTTCCGCTGGTCACGGTGT
1 TGGTTCCACTGGTCACGGTGT
* * *
149244 CGGGTCCACCGGTCACGGTGT
1 TGGTTCCACTGGTCACGGTGT
* *
149265 TGGCTCGACTGGTCAC
1 TGGTTCCACTGGTCAC
149281 AGCACTTCCG
Statistics
Matches: 57, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
15 13 0.23
17 1 0.02
19 1 0.02
21 42 0.74
ACGTcount: A:0.10, C:0.29, G:0.35, T:0.27
Consensus pattern (21 bp):
TGGTTCCACTGGTCACGGTGT
Left flanking sequence: Indices 148687 -- 149186
CTTTACGGCGACTCTAACCAGGGCGGTCTTGCCGGTAAGGCCGGTGCTGCTGCCGGTGCCATGGG
CTCTGGTCACCACTCTGGGCACCACTCTGGTACCACTGGTGTTGGTTCCACCGGTGTGAGCTCCA
CTGGTGAGTACGCCCCTTCCGGCGCTGGTGGTGTTGGCTCTACTGGTCGCGGTGTTGGTTCCACT
GGTGTTGGTTCCACTGGTGTTGGTTCCACTGGTGTTGGTTCCACTGGTGTTGGTTCCACTGGTGT
TGGTTCCACTGGTGTTGGTTCCACTGGTGTTGGCTCCACTGGCCACGGTGTTGGCTCCACTGGTG
TTGGTTCCACCGGTCACGGTGTTGGCTCTACTGGCCACCACTCTTCCGCTGGCCAGCGTTACGAG
AACGCTAAGGACCAAGAGAAGCTTTACGGCGACTCTAACCAGGGCGGTCTTGCCGGTAAGGCTGG
TGCTGCTGCTGGGGCCATGGGCTCTGGTCACCACTCTGGTACCAC
Right flanking sequence: Indices 149281 -- 149780
AGCACTTCCGCTGGCCTGCGCTACGAGGCTGCTAAGGACCAAGAGAAGCTTTACGGCGACTCTAA
CCAGGGCGGTCTTGCCGGTAAGGCTGGTGCCGCTGCTGGTGCTGTGGGCTCTGGTCACCACTCTG
GGACTACTGGAACCACCGGTACCACTGGTCACGGTGTTGGTGCCACTGGTACTACCGGTCATGGT
GTTGGTGCCACTGGTGCCACTGGTCGTGACAACGTGAACGTGCCTGGCTCGTACGAGTCTTCCGG
TACCCACGGTGCCACTGGTGCCCACGGTACCACCGGCACTACCGGTACTCACGGTACTACTGGTG
CTCATGGTACTACTGGTACTCATGGTACCACTGGTACCACCGGTACCGCCGCAGATGGTGAGAAG
AAGGGTTTCTTTGAGAAGATCAAGGATAAGATTGAGGACACCCTTTAAATTTGTATTATGTTGTG
ATACTTTGTGTTTTAAACCAAAAAATAAGAAATATATGTTCATTA
Found at i:149355 original size:231 final size:231
Alignment explanation
Indices: 149008--149426 Score: 671
Period size: 231 Copynumber: 1.8 Consensus size: 231
148998 TGGCTCCACT
* * * * *
149008 GGTGTTGGTTCCACCGGTCACGGTGTTGGCTCTACTGGCCACCACTCTTCCGCTGGCCAGCGTTA
1 GGTGTCGGGTCCACCGGTCACGGTGTTGGCTCGACTGGCCACCACACTTCCGCTGGCCAGCGCTA
149073 CGAGAACGCTAAGGACCAAGAGAAGCTTTACGGCGACTCTAACCAGGGCGGTCTTGCCGGTAAGG
66 CGAGAACGCTAAGGACCAAGAGAAGCTTTACGGCGACTCTAACCAGGGCGGTCTTGCCGGTAAGG
* * *
149138 CTGGTGCTGCTGCTGGGGCCATGGGCTCTGGTCACCACTCTGGTACCACTGGTACCACTGGCCAC
131 CTGGTGCCGCTGCTGGGGCCATGGGCTCTGGTCACCACTCTGGGACCACTGGAACCACTGGCCAC
149203 GGTGTTGGTTCCACCGGTGTTGGTTCCGCTGGTCAC
196 GGTGTTGGTTCCACCGGTGTTGGTTCCGCTGGTCAC
* *
149239 GGTGTCGGGTCCACCGGTCACGGTGTTGGCTCGACTGGTCA-CAGCACTTCCGCTGGCCTGCGCT
1 GGTGTCGGGTCCACCGGTCACGGTGTTGGCTCGACTGGCCACCA-CACTTCCGCTGGCCAGCGCT
*
149303 ACGAG-GCTGCTAAGGACCAAGAGAAGCTTTACGGCGACTCTAACCAGGGCGGTCTTGCCGGTAA
65 ACGAGAAC-GCTAAGGACCAAGAGAAGCTTTACGGCGACTCTAACCAGGGCGGTCTTGCCGGTAA
* ** *
149367 GGCTGGTGCCGCTGCTGGTGCTGTGGGCTCTGGTCACCACTCTGGGACTACTGGAACCAC
129 GGCTGGTGCCGCTGCTGGGGCCATGGGCTCTGGTCACCACTCTGGGACCACTGGAACCAC
149427 CGGTACCACT
Statistics
Matches: 171, Mismatches: 15, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
230 3 0.02
231 168 0.98
ACGTcount: A:0.16, C:0.29, G:0.32, T:0.23
Consensus pattern (231 bp):
GGTGTCGGGTCCACCGGTCACGGTGTTGGCTCGACTGGCCACCACACTTCCGCTGGCCAGCGCTA
CGAGAACGCTAAGGACCAAGAGAAGCTTTACGGCGACTCTAACCAGGGCGGTCTTGCCGGTAAGG
CTGGTGCCGCTGCTGGGGCCATGGGCTCTGGTCACCACTCTGGGACCACTGGAACCACTGGCCAC
GGTGTTGGTTCCACCGGTGTTGGTTCCGCTGGTCAC
Left flanking sequence: Indices 148508 -- 149007
TTGCTTCCCACGAGCACAACAAGCACTCTGGTCTTGGTTCCACTGGTACTACTGGCCACGGTGTC
GGTTCTACCGGTGTTGGCTCCACTGGTGTTGGTTCCACCGGTCACGGTGTTGGCTCTACTGGCCA
CCACTCTTCCGCTGGCCAGCGTTACGAGAACGCTAAGGACCAAGAGAAGCTTTACGGCGACTCTA
ACCAGGGCGGTCTTGCCGGTAAGGCCGGTGCTGCTGCCGGTGCCATGGGCTCTGGTCACCACTCT
GGGCACCACTCTGGTACCACTGGTGTTGGTTCCACCGGTGTGAGCTCCACTGGTGAGTACGCCCC
TTCCGGCGCTGGTGGTGTTGGCTCTACTGGTCGCGGTGTTGGTTCCACTGGTGTTGGTTCCACTG
GTGTTGGTTCCACTGGTGTTGGTTCCACTGGTGTTGGTTCCACTGGTGTTGGTTCCACTGGTGTT
GGTTCCACTGGTGTTGGCTCCACTGGCCACGGTGTTGGCTCCACT
Right flanking sequence: Indices 149427 -- 149926
CGGTACCACTGGTCACGGTGTTGGTGCCACTGGTACTACCGGTCATGGTGTTGGTGCCACTGGTG
CCACTGGTCGTGACAACGTGAACGTGCCTGGCTCGTACGAGTCTTCCGGTACCCACGGTGCCACT
GGTGCCCACGGTACCACCGGCACTACCGGTACTCACGGTACTACTGGTGCTCATGGTACTACTGG
TACTCATGGTACCACTGGTACCACCGGTACCGCCGCAGATGGTGAGAAGAAGGGTTTCTTTGAGA
AGATCAAGGATAAGATTGAGGACACCCTTTAAATTTGTATTATGTTGTGATACTTTGTGTTTTAA
ACCAAAAAATAAGAAATATATGTTCATTAATTCAATCGCCATTTGTAGAGTTCGAACTCTTCACA
AATCGATGTCGAGCGAAGCCTTGGGGAATTTTTACAAATTTTACACATTTTCCAATAATGAAAGC
TGATTTGGTGACCATCAAAATTATAAGGAGCGCAATGTCTATAGT
Found at i:149471 original size:30 final size:30
Alignment explanation
Indices: 149423--149500 Score: 102
Period size: 30 Copynumber: 2.6 Consensus size: 30
149413 ACTACTGGAA
* *
149423 CCACCGGTACCACTGGTCACGGTGTTGGTG
1 CCACTGGTACCACCGGTCACGGTGTTGGTG
* *
149453 CCACTGGTACTACCGGTCATGGTGTTGGTG
1 CCACTGGTACCACCGGTCACGGTGTTGGTG
* *
149483 CCACTGGTGCCACTGGTC
1 CCACTGGTACCACCGGTC
149501 GTGACAACGT
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 41 1.00
ACGTcount: A:0.13, C:0.29, G:0.32, T:0.26
Consensus pattern (30 bp):
CCACTGGTACCACCGGTCACGGTGTTGGTG
Left flanking sequence: Indices 148923 -- 149422
CACTGGTGTTGGTTCCACTGGTGTTGGTTCCACTGGTGTTGGTTCCACTGGTGTTGGCTCCACTG
GCCACGGTGTTGGCTCCACTGGTGTTGGTTCCACCGGTCACGGTGTTGGCTCTACTGGCCACCAC
TCTTCCGCTGGCCAGCGTTACGAGAACGCTAAGGACCAAGAGAAGCTTTACGGCGACTCTAACCA
GGGCGGTCTTGCCGGTAAGGCTGGTGCTGCTGCTGGGGCCATGGGCTCTGGTCACCACTCTGGTA
CCACTGGTACCACTGGCCACGGTGTTGGTTCCACCGGTGTTGGTTCCGCTGGTCACGGTGTCGGG
TCCACCGGTCACGGTGTTGGCTCGACTGGTCACAGCACTTCCGCTGGCCTGCGCTACGAGGCTGC
TAAGGACCAAGAGAAGCTTTACGGCGACTCTAACCAGGGCGGTCTTGCCGGTAAGGCTGGTGCCG
CTGCTGGTGCTGTGGGCTCTGGTCACCACTCTGGGACTACTGGAA
Right flanking sequence: Indices 149501 -- 150000
GTGACAACGTGAACGTGCCTGGCTCGTACGAGTCTTCCGGTACCCACGGTGCCACTGGTGCCCAC
GGTACCACCGGCACTACCGGTACTCACGGTACTACTGGTGCTCATGGTACTACTGGTACTCATGG
TACCACTGGTACCACCGGTACCGCCGCAGATGGTGAGAAGAAGGGTTTCTTTGAGAAGATCAAGG
ATAAGATTGAGGACACCCTTTAAATTTGTATTATGTTGTGATACTTTGTGTTTTAAACCAAAAAA
TAAGAAATATATGTTCATTAATTCAATCGCCATTTGTAGAGTTCGAACTCTTCACAAATCGATGT
CGAGCGAAGCCTTGGGGAATTTTTACAAATTTTACACATTTTCCAATAATGAAAGCTGATTTGGT
GACCATCAAAATTATAAGGAGCGCAATGTCTATAGTATTTACGGGGCACGATAAAGTTTATACTC
ACGAGCGTCATTGCCCAAAAGATGTACCATGAAGTCATAATGAGC
Found at i:149599 original size:18 final size:18
Alignment explanation
Indices: 149578--149651 Score: 87
Period size: 18 Copynumber: 4.1 Consensus size: 18
149568 TACCACCGGC
*
149578 ACTACCGGTACTCACGGT
1 ACTACTGGTACTCACGGT
* *
149596 ACTACTGGTGCTCATGGT
1 ACTACTGGTACTCACGGT
*
149614 ACTACTGGTACTCATGGT
1 ACTACTGGTACTCACGGT
*
149632 ACCACTGGTAC-CACCGGT
1 ACTACTGGTACTCA-CGGT
149650 AC
1 AC
149652 CGCCGCAGAT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
17 2 0.04
18 47 0.96
ACGTcount: A:0.22, C:0.30, G:0.23, T:0.26
Consensus pattern (18 bp):
ACTACTGGTACTCACGGT
Left flanking sequence: Indices 149078 -- 149577
ACGCTAAGGACCAAGAGAAGCTTTACGGCGACTCTAACCAGGGCGGTCTTGCCGGTAAGGCTGGT
GCTGCTGCTGGGGCCATGGGCTCTGGTCACCACTCTGGTACCACTGGTACCACTGGCCACGGTGT
TGGTTCCACCGGTGTTGGTTCCGCTGGTCACGGTGTCGGGTCCACCGGTCACGGTGTTGGCTCGA
CTGGTCACAGCACTTCCGCTGGCCTGCGCTACGAGGCTGCTAAGGACCAAGAGAAGCTTTACGGC
GACTCTAACCAGGGCGGTCTTGCCGGTAAGGCTGGTGCCGCTGCTGGTGCTGTGGGCTCTGGTCA
CCACTCTGGGACTACTGGAACCACCGGTACCACTGGTCACGGTGTTGGTGCCACTGGTACTACCG
GTCATGGTGTTGGTGCCACTGGTGCCACTGGTCGTGACAACGTGAACGTGCCTGGCTCGTACGAG
TCTTCCGGTACCCACGGTGCCACTGGTGCCCACGGTACCACCGGC
Right flanking sequence: Indices 149652 -- 150151
CGCCGCAGATGGTGAGAAGAAGGGTTTCTTTGAGAAGATCAAGGATAAGATTGAGGACACCCTTT
AAATTTGTATTATGTTGTGATACTTTGTGTTTTAAACCAAAAAATAAGAAATATATGTTCATTAA
TTCAATCGCCATTTGTAGAGTTCGAACTCTTCACAAATCGATGTCGAGCGAAGCCTTGGGGAATT
TTTACAAATTTTACACATTTTCCAATAATGAAAGCTGATTTGGTGACCATCAAAATTATAAGGAG
CGCAATGTCTATAGTATTTACGGGGCACGATAAAGTTTATACTCACGAGCGTCATTGCCCAAAAG
ATGTACCATGAAGTCATAATGAGCCAATTCCCAATCTAAATGGCCAATCGAAAGCACAGTGGTGT
CTGGGAGATCTTTGGCAACGATGTCATGACACCTGGACATTACGTCCATGTTATCCATACACGAG
AAGGCCTCATCTAAGATCAAGATCTCTGGATTCTTCAAAATGGCT
Found at i:172120 original size:99 final size:99
Alignment explanation
Indices: 172016--172222 Score: 317
Period size: 99 Copynumber: 2.1 Consensus size: 99
172006 AATGGGAGAA
*
172016 GAGGACGGGATGTCAACAATCAGAGAGGACGAGGGAACATTCTCGGTGGAAGAAGAGGGT-ACGT
1 GAGGACGGGATGTCAACAATCAGAGAGGACGAGGGAACATTCTCGATGGAAGAAGA-GGTCACGT
* * *
172080 CAATGGATGACGAGGGAACGTCGACGCTGGAGGAT
65 CAATGGATGACGACGGAACGTCAACACTGGAGGAT
* * *
172115 GAGGACGGAATTTCAACATTCAGAGAGGACGAGGGAACATTCTCGATGGAAGAAGAGGTCACGTC
1 GAGGACGGGATGTCAACAATCAGAGAGGACGAGGGAACATTCTCGATGGAAGAAGAGGTCACGTC
* *
172180 AATTGATGACGACGGCACGTCAACACTGGAGGAT
66 AATGGATGACGACGGAACGTCAACACTGGAGGAT
172214 GAGGACGGG
1 GAGGACGGG
172223 GTATCAATAA
Statistics
Matches: 97, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
98 3 0.03
99 94 0.97
ACGTcount: A:0.32, C:0.16, G:0.37, T:0.15
Consensus pattern (99 bp):
GAGGACGGGATGTCAACAATCAGAGAGGACGAGGGAACATTCTCGATGGAAGAAGAGGTCACGTC
AATGGATGACGACGGAACGTCAACACTGGAGGAT
Left flanking sequence: Indices 171516 -- 172015
TGGTGAGGCTCTTGGGGTCACCGATGGTGGTGTGGTACAGAGGAACACTCAGCGAAGACACACCG
GGCACGGTTGTGTCCTCCGCGTTGATGGGGTTCGTAGGAGCCTGCTCTCCAGAGGGAGCAGGTTG
GGTGACAGTCACCGTGGGAGTGTAAATCTCAGTCTCAGTAACCGTGGAGCAGAGACCACTCGAGG
GCAATGGCAGAACCAAAGAGGTGGCCAGGGAAGCGGAAGTAGGGTCCTCCAAGGTGGAAGGGGTG
CTTGTGCCAACCAACAGCAGCAAGTCCGAGGATGAAACGATGGAAGTAGGAACACCCTCGCTTGT
GATAACAATAGACGACGAAGGGGTAAAAGAGGTCTCAATTGCAGACGATGTTGATGGGATGCCGA
CAGTCAAAGACGACGACGGGATCTCCACGTTCGAAGATGTCGAGGGGATGTCAATGATCGAAGAG
GACAGGATGTCCACAATCGATGTGGGAACACTCTCAATGGGAGAA
Right flanking sequence: Indices 172223 -- 172722
GTATCAATAATGGACGACGACGAGGGGATTTCCACGGTCGACGAAAGGGAGGAGGATGACAGGCT
AGAAGACAGCAGAGACAACAAAGACGACGACGACGATGAGGAAGACGACGACGACGACGACGACG
ACGACGACGACGACGACGACGAAGACAATGAAGACGAGGTGTCATCAGTGACGTTACCTCCGTGA
ACGGTAATACCAGTCAAAAGAACAGTCTGGGTCTTGTAAACCCCACCAGACAGAAGAACGGGCAC
AGCGCGCAACTCCCCTGAAAACTTAGCCTTATCAATGGCACCAAACAAGAGGTGGCCACCCTTGC
CTTTAATGAGGTTGACGGAGTAGGCCACACGGTTGATGAGCCCCTGTTCTTTCATCATCTCGGGG
ATGGTGGTGTATTTACGCTCACCGTTCGTGAGACCGGAGTAGGAGAGACCAAAGACACCCACCGT
GTTGTTATGGGTCTCGTTAGCCACAGCGAATTCAGCATCCTTCAC
Found at i:172245 original size:99 final size:99
Alignment explanation
Indices: 172016--172248 Score: 290
Period size: 99 Copynumber: 2.4 Consensus size: 99
172006 AATGGGAGAA
* * * *
172016 GAGGACGGGATGTCAACAATCAGAGAGGACGAGGGAACATTCTCGGTGGAAGAAGAGGGTACGTC
1 GAGGACGGAATATCAACAATCAGAGACGACGAGGGAACATTCTCGATGGAAGAAGAGGGTACGTC
* * *
172081 AATGGATGACGAGGGAACGTCGACGCTGGAGGAT
66 AATGGATGACGACGGAACGTCAACACTGGAGGAT
* * *
172115 GAGGACGGAATTTCAACATTCAGAGAGGACGAGGGAACATTCTCGATGGAAGAAGA-GGTCACGT
1 GAGGACGGAATATCAACAATCAGAGACGACGAGGGAACATTCTCGATGGAAGAAGAGGGT-ACGT
* *
172179 CAATTGATGACGACGGCACGTCAACACTGGAGGAT
65 CAATGGATGACGACGGAACGTCAACACTGGAGGAT
** * *
172214 GAGGACGGGGTATCAATAAT-GGACGACGACGAGGG
1 GAGGACGGAATATCAACAATCAGA-GACGACGAGGG
172249 GATTTCCACG
Statistics
Matches: 116, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
98 5 0.04
99 111 0.96
ACGTcount: A:0.32, C:0.16, G:0.36, T:0.15
Consensus pattern (99 bp):
GAGGACGGAATATCAACAATCAGAGACGACGAGGGAACATTCTCGATGGAAGAAGAGGGTACGTC
AATGGATGACGACGGAACGTCAACACTGGAGGAT
Left flanking sequence: Indices 171516 -- 172015
TGGTGAGGCTCTTGGGGTCACCGATGGTGGTGTGGTACAGAGGAACACTCAGCGAAGACACACCG
GGCACGGTTGTGTCCTCCGCGTTGATGGGGTTCGTAGGAGCCTGCTCTCCAGAGGGAGCAGGTTG
GGTGACAGTCACCGTGGGAGTGTAAATCTCAGTCTCAGTAACCGTGGAGCAGAGACCACTCGAGG
GCAATGGCAGAACCAAAGAGGTGGCCAGGGAAGCGGAAGTAGGGTCCTCCAAGGTGGAAGGGGTG
CTTGTGCCAACCAACAGCAGCAAGTCCGAGGATGAAACGATGGAAGTAGGAACACCCTCGCTTGT
GATAACAATAGACGACGAAGGGGTAAAAGAGGTCTCAATTGCAGACGATGTTGATGGGATGCCGA
CAGTCAAAGACGACGACGGGATCTCCACGTTCGAAGATGTCGAGGGGATGTCAATGATCGAAGAG
GACAGGATGTCCACAATCGATGTGGGAACACTCTCAATGGGAGAA
Right flanking sequence: Indices 172249 -- 172748
GATTTCCACGGTCGACGAAAGGGAGGAGGATGACAGGCTAGAAGACAGCAGAGACAACAAAGACG
ACGACGACGATGAGGAAGACGACGACGACGACGACGACGACGACGACGACGACGACGACGAAGAC
AATGAAGACGAGGTGTCATCAGTGACGTTACCTCCGTGAACGGTAATACCAGTCAAAAGAACAGT
CTGGGTCTTGTAAACCCCACCAGACAGAAGAACGGGCACAGCGCGCAACTCCCCTGAAAACTTAG
CCTTATCAATGGCACCAAACAAGAGGTGGCCACCCTTGCCTTTAATGAGGTTGACGGAGTAGGCC
ACACGGTTGATGAGCCCCTGTTCTTTCATCATCTCGGGGATGGTGGTGTATTTACGCTCACCGTT
CGTGAGACCGGAGTAGGAGAGACCAAAGACACCCACCGTGTTGTTATGGGTCTCGTTAGCCACAG
CGAATTCAGCATCCTTCACCGTGAGACCGTCACCACCAAAAGTGA
Found at i:172316 original size:3 final size:3
Alignment explanation
Indices: 172310--172374 Score: 103
Period size: 3 Copynumber: 21.7 Consensus size: 3
172300 AGACAACAAA
* * *
172310 GAC GAC GAC GAC GAT GAG GAA GAC GAC GAC GAC GAC GAC GAC GAC GAC
1 GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC GAC
172358 GAC GAC GAC GAC GAC GA
1 GAC GAC GAC GAC GAC GA
172375 AGACAATGAA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 58 1.00
ACGTcount: A:0.35, C:0.28, G:0.35, T:0.02
Consensus pattern (3 bp):
GAC
Left flanking sequence: Indices 171810 -- 172309
AAACGATGGAAGTAGGAACACCCTCGCTTGTGATAACAATAGACGACGAAGGGGTAAAAGAGGTC
TCAATTGCAGACGATGTTGATGGGATGCCGACAGTCAAAGACGACGACGGGATCTCCACGTTCGA
AGATGTCGAGGGGATGTCAATGATCGAAGAGGACAGGATGTCCACAATCGATGTGGGAACACTCT
CAATGGGAGAAGAGGACGGGATGTCAACAATCAGAGAGGACGAGGGAACATTCTCGGTGGAAGAA
GAGGGTACGTCAATGGATGACGAGGGAACGTCGACGCTGGAGGATGAGGACGGAATTTCAACATT
CAGAGAGGACGAGGGAACATTCTCGATGGAAGAAGAGGTCACGTCAATTGATGACGACGGCACGT
CAACACTGGAGGATGAGGACGGGGTATCAATAATGGACGACGACGAGGGGATTTCCACGGTCGAC
GAAAGGGAGGAGGATGACAGGCTAGAAGACAGCAGAGACAACAAA
Right flanking sequence: Indices 172375 -- 172874
AGACAATGAAGACGAGGTGTCATCAGTGACGTTACCTCCGTGAACGGTAATACCAGTCAAAAGAA
CAGTCTGGGTCTTGTAAACCCCACCAGACAGAAGAACGGGCACAGCGCGCAACTCCCCTGAAAAC
TTAGCCTTATCAATGGCACCAAACAAGAGGTGGCCACCCTTGCCTTTAATGAGGTTGACGGAGTA
GGCCACACGGTTGATGAGCCCCTGTTCTTTCATCATCTCGGGGATGGTGGTGTATTTACGCTCAC
CGTTCGTGAGACCGGAGTAGGAGAGACCAAAGACACCCACCGTGTTGTTATGGGTCTCGTTAGCC
ACAGCGAATTCAGCATCCTTCACCGTGAGACCGTCACCACCAAAAGTGATTGTGTCATGGACGAA
TTGGCCAAAGGCGCTGGAGTCATCGGTGTATTGGATCAGAAAATCGTTGTCGGTGGTCTTAAGCG
AGGTGGACTTCAGTTGATCAAAAGTGCCGAACACACCACAGGGTG
Found at i:190092 original size:18 final size:17
Alignment explanation
Indices: 190050--190093 Score: 52
Period size: 18 Copynumber: 2.5 Consensus size: 17
190040 ACCAGGCACC
*
190050 GGAGTGGCCACCCCCAGC
1 GGAGTGG-CACCCCCAGA
*
190068 GGTGTGGCAGCCCCCAGA
1 GGAGTGGCA-CCCCCAGA
190086 GGAGTGGC
1 GGAGTGGC
190094 CGTGGCCAGC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
17 2 0.09
18 20 0.91
ACGTcount: A:0.16, C:0.34, G:0.41, T:0.09
Consensus pattern (17 bp):
GGAGTGGCACCCCCAGA
Left flanking sequence: Indices 189550 -- 190049
CGGGACCGTCGATGTCCATCAGCACTTGCAGAGCCAGCGAACGAGTCTTCTTGAGGGCCGGCCTT
TTGTTGACGTCGTGAATCACTTCCTCTGCAACTACTACCTCCACCACGAGCGTGTGGGTGACAAA
GATGCCCAAGGTGGGGTCGTCGATGTCGCACGCCACATTGGCAATCAGCCGGGCGTTCTGGTGCA
CCATGTCGGTGCGGTTGTCGTCCAAGCTGCTTTTGGTGGTCACTGGCTTGTGCCAGCCGGTGAAA
AAGTCGTTGATGTCGATGTGGGCCACCATCTCAACCTTGCCGCGGTTGGAGAAATCCAGCTTCCA
CCCGCTCTTGATCTCGCCGTGGCGCACCACCCGTGTTTCCTCGAGGTACAATCTCTCCAGGCCGT
CGTCGGTGAAGGCGGCAGGCACGGGAGGCTGGTCCGGGTGGCGGAACCGGCGCATCCGGTTGGCC
ACAGCAGCAGCGCCAATCGGGGTGCTGGCTGCTGCACCAGGCACC
Right flanking sequence: Indices 190094 -- 190593
CGTGGCCAGCCCAGACGGGGTGGTGGCACCCAGGTTGGTGCGGTACCCGTAGCGGATAAAATCCT
CCACGAACGAGTTGTGGACATCGGCAATATTGGTGCGAGGCTGTTCGTTTTCACCGTCGTCAATT
ACGACGTCGCGGTTCCCCTCCTCGGGAGGCGGCGAGTTGCGGTCGACGTACTGCAGCGGGTTGCG
GGTCAACACCACCCCGGTCTGGATGGTCAGGTGGTGCAAGTTGCCCTTGGCCGCCTGTTCCTTGG
GGCCGTACAACTTGGACTTGCGCTCGTAGTCCTCTGCGGACTCGAGTTTGTGCTTGTGCTTGTCA
CACACATGGGCCGCCACCTTGACGTTTTCCTCCATCTTCCACGCGAGCTTACGCATGCGCCAGCG
CCGTTCGCCTGACTTCAGTACCACGTTGTCAAGCCGCAACTCTATGGGGAACGTCAGCTTCGGGT
AGGCCACGTTGGGCAACACCGCGCCAGCCGTCACCTCGGTGGGCG
Found at i:235957 original size:12 final size:12
Alignment explanation
Indices: 235940--235974 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
235930 AGCTACCGGA
*
235940 GCGGCGGCGGGC
1 GCGGCGGCAGGC
235952 GCGGCGGCAGGC
1 GCGGCGGCAGGC
*
235964 GCAGCGGCAGG
1 GCGGCGGCAGG
235975 AGCCGGTGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.09, C:0.31, G:0.60, T:0.00
Consensus pattern (12 bp):
GCGGCGGCAGGC
Left flanking sequence: Indices 235440 -- 235939
TCCACCGTCCCACCAACCTGAAAAAGCTCAAGGACTTGATTTTGCAGATGGACATCGCCATGAAC
TTGCAGTTGCAAAAGTACGTCACCTGGAACGAGAACTTGATCATGAACTCAGGAGTGTTGGCGGT
GCCGTTGCAGGAGGGCAAGCCGCTGTTGAAGGACATCGCGTCCCTGGTGGACAACGAGCGCGACT
TGTACGACTATTTGATGAAGCACGAGCGGTCGCCGGCGCTGCAAAAGCTGATGCAACCGGTGGAA
TACGTGGTCCACCCGTCCCTCGGAAAGATGCAGTCCCACTCTCAACCCAAACCTTTCCTTAATAA
GAGCGAGGGCCAACGCAACTTTTCGTCGTCCTCTACTCCTCTGCTGGCGCCCACCGCTTCACAAC
CACCGCCCAACACCTCCCAGGCTCCTTCGGCGCTGACAACCTCGATGGGTGCGCTGCCGTACGGC
AAGTCTCTGAGCTACAACTCCGGATCTACATCGGCAGCTACCGGA
Right flanking sequence: Indices 235975 -- 236474
AGCCGGTGCCGCTGCGGCTTCGTCGTACCGCGACGGGGACTATGGCAACAGCTACAACCAGTCCA
ACTACAACGGCAACCAGTCCACGCTGACGGCCCCGTACCCCACCGCCGAGCTGGACCACGACAAC
GCCAGCTCCATCCAGCCCCCTTCGCAGATGTACTCGTCGCTCGACCCCTCGGCGTCGCCTGAGCT
TACCGGACCGAAGCCGTACAGTCTTGCGCAGCCGACATTTGGGGTGTCCATTGAGGAGGTGATCC
AGTTTGCCGGCATCGACAACGTCCCGTTGGTGGTGAAGAGATGTATGGAGGTAGTCGAGCAGTAC
GGCCTTGATATCGAGGGGTTGTACCGGACGTCGGGGAACAAGTCTACCGTGACCCACTTGCGCGA
GCAGATTGACCAGAAGTACACGAACTACTTGCTTGTTGGCAGCAACATCGAGGACAGCAGCGTCA
AAGACGGCGACATCTATTGCGTGGCGCTGTTGCTCAAGTTGTATT
Found at i:257665 original size:9 final size:9
Alignment explanation
Indices: 257653--257696 Score: 52
Period size: 9 Copynumber: 4.9 Consensus size: 9
257643 ACGACCGCGC
257653 TGCTGCTGT
1 TGCTGCTGT
*
257662 TGCTGCTGC
1 TGCTGCTGT
* **
257671 TGCGGGGGT
1 TGCTGCTGT
257680 TGCTGCTGT
1 TGCTGCTGT
257689 TGCTGCTG
1 TGCTGCTG
257697 GCCCCACTGC
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.00, C:0.23, G:0.41, T:0.36
Consensus pattern (9 bp):
TGCTGCTGT
Left flanking sequence: Indices 257153 -- 257652
TACCAATCTCGATATCGGGCTCGTCAATAACCATCCCGCTGTTCAAAGGCTCGCCACCGGTGCCA
CCCCATTGGGCAGACACAACCCAGGTGCGGTCAGCGTCCGTCAACCGCAGAATAGGAATCACCAG
CACACCGTGCTGATAGTTGCAACAGTCACGGGGACCAAAACCTACACCCCACCGAGTGCGGAGCG
GCAACAGACCATCCTTGTTGAACAGACTGATCACCTGCTCCGCTTCCCTACGCAGGTACACCTTG
ACGAACGCGTGCTTGCGCTCCAGGTTCATAATAATGGACTGAGTCTCGGCAAACGGCCGCAAAAC
ATCAGAGAGACCGTTTTCATCCATGCCGCGAGGCACACCACCAATGAAGAGAGTACGACTAAGCA
CTTTAAACGACCCCTGGGCAATACTGGGGTCAAAACCAACGTTACGAGGGCGGTAGTGCGGCTCG
CCCGGCTGGTTAATCTCCGCCGGAGGCTTACCGGGACGACCGCGC
Right flanking sequence: Indices 257697 -- 258196
GCCCCACTGCTGAGGCTGCTGGCCCCACTGGCCCTGCTGGCCCTGCTGGTTGTCCCCGTATCTCG
TGGGAGAACGGTCACGGTTGTACCGGGGAGGCGAGCGGCCCCCGCGCAAGGCCAGGCCCTGCTGG
TTGTACAGGTATCCAGTTTGGGGTACAGGAGGCAAGGAGCTAGGTTGAGAATACTGGCTAGATTG
CTGGTTAGAAGACAACAGCTGCAACGCCCCCAACAACTGGCTGGGGTCTTGCTGCTGCTGAGAAG
AGGGCTGCGACTGGGACCCACTCAACATGCTCAATTGTGAGAGAATCGAGTTGGCGTCAGACGCC
ACAGAGTTCGCAGTAGCAGACTGGGGAGATTTAGTCGTCTGTGCCAACGACGCCAACCGCAGCAA
AATCGAGTTGGTGTCCTGGACAGGAGCTGAGTCCGTGGACTGCTCTTGGGTGGAGCTGGACGTAG
AAGCCGTAGCAGGCTCCTCCGACTCCGTCCGCTTGGGGGCCGGAG
Found at i:257736 original size:9 final size:9
Alignment explanation
Indices: 257712--257745 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
257702 ACTGCTGAGG
257712 CTGCTGGCC
1 CTGCTGGCC
**
257721 CCACTGGCC
1 CTGCTGGCC
257730 CTGCTGGCC
1 CTGCTGGCC
257739 CTGCTGG
1 CTGCTGG
257746 TTGTCCCCGT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.03, C:0.44, G:0.32, T:0.21
Consensus pattern (9 bp):
CTGCTGGCC
Left flanking sequence: Indices 257212 -- 257711
GTGCCACCCCATTGGGCAGACACAACCCAGGTGCGGTCAGCGTCCGTCAACCGCAGAATAGGAAT
CACCAGCACACCGTGCTGATAGTTGCAACAGTCACGGGGACCAAAACCTACACCCCACCGAGTGC
GGAGCGGCAACAGACCATCCTTGTTGAACAGACTGATCACCTGCTCCGCTTCCCTACGCAGGTAC
ACCTTGACGAACGCGTGCTTGCGCTCCAGGTTCATAATAATGGACTGAGTCTCGGCAAACGGCCG
CAAAACATCAGAGAGACCGTTTTCATCCATGCCGCGAGGCACACCACCAATGAAGAGAGTACGAC
TAAGCACTTTAAACGACCCCTGGGCAATACTGGGGTCAAAACCAACGTTACGAGGGCGGTAGTGC
GGCTCGCCCGGCTGGTTAATCTCCGCCGGAGGCTTACCGGGACGACCGCGCTGCTGCTGTTGCTG
CTGCTGCGGGGGTTGCTGCTGTTGCTGCTGGCCCCACTGCTGAGG
Right flanking sequence: Indices 257746 -- 258245
TTGTCCCCGTATCTCGTGGGAGAACGGTCACGGTTGTACCGGGGAGGCGAGCGGCCCCCGCGCAA
GGCCAGGCCCTGCTGGTTGTACAGGTATCCAGTTTGGGGTACAGGAGGCAAGGAGCTAGGTTGAG
AATACTGGCTAGATTGCTGGTTAGAAGACAACAGCTGCAACGCCCCCAACAACTGGCTGGGGTCT
TGCTGCTGCTGAGAAGAGGGCTGCGACTGGGACCCACTCAACATGCTCAATTGTGAGAGAATCGA
GTTGGCGTCAGACGCCACAGAGTTCGCAGTAGCAGACTGGGGAGATTTAGTCGTCTGTGCCAACG
ACGCCAACCGCAGCAAAATCGAGTTGGTGTCCTGGACAGGAGCTGAGTCCGTGGACTGCTCTTGG
GTGGAGCTGGACGTAGAAGCCGTAGCAGGCTCCTCCGACTCCGTCCGCTTGGGGGCCGGAGGCTC
GGGGGCCGCCACCGTGACTAAGGGGGGTCCAGGGGAACCCGGAGG
Found at i:259449 original size:11 final size:11
Alignment explanation
Indices: 259433--259458 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
259423 GTCCAAAGCG
259433 ACACTCACACT
1 ACACTCACACT
259444 ACACTCACACT
1 ACACTCACACT
259455 ACAC
1 ACAC
259459 CCACGCTTCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.46, G:0.00, T:0.15
Consensus pattern (11 bp):
ACACTCACACT
Left flanking sequence: Indices 258933 -- 259432
CGAGTGAGGAACAGTGGAGGTCATGAGTGGGGTGGGGTCTTGTATGGTCATGGGGTGCGCCGGGC
GGGGTCAGCGGTGCAGATTTCTTCTGGTGGGATGATCACGCATGGTCAGGCCAGGGGCTATCCGG
CACCGGAATGTACGCAATTGTGGTCATTATTGAAAAGAAAGGTAATGGTTACAGCTGATGGTGTT
TGATTCAGCAGGTGGTGGAACGGTCGTTCCCATGACAACCCGTGGTTCTATTGCGTACGCAACAT
GTAGACGAAGATTGTAATTTGGCATGCCAACTGACAGGTTGGGAAGATAACGTAAGGTGTTAACA
CCGTTCCGCTGTGATTGTGACCTAGCAAAGGTATTGTATTGCTTCTCTGGCACTACTAACTTGTC
GTGTGAGCGTTTGAGTCAACCACCATATTCGCAGTTCAATGCACCACCTTCGCCGAACTCCAAAA
CCCGTAAAACCCACCATGAAAGAGTCGTTCAACCTGTCCAAAGCG
Right flanking sequence: Indices 259459 -- 259958
CCACGCTTCCTCGCTTCTCCCGCTCCCACACCCCCAGTCCCTCCCAAGCCGCAGTGCCCGCAACC
GCACTTCGCGATCAAAGTGAAAAAAAAATCTCCAGTCAAGCCAAACATGATGCACCGGGTTGTTG
CCAGAGGCTATGCCCTGGCGGCCGCTTCCAAGAAGATTCTGTCGACATTGGTGCTTTCGCGGACC
CCTGTCGTCACCGCCGACCTTCCCGCGTTTGAATCGCAATACTACAAATACCAGAACGAGTTGTG
GAGACGGTTAATGTGGACGTTCCCGAAATGGTTCTACTTCCGTGACGGTACGCTTGCGGCCCAGA
AGTTTAAGGAGCTCAACAAGGACCCGGTGGACAACAACCCCGACATCGAGTACCCGCGTGGGCGC
CCCGAGATCCGCCAGAACCGCGACCGCCGCTTCAAGCAGGAGGTCAATGTGCCCAAGACCTACGA
CGCGGACAGCACCTCCACCAACAAGGACGACTTGTCGCGGAAGAT
Found at i:263070 original size:20 final size:20
Alignment explanation
Indices: 263040--263108 Score: 84
Period size: 20 Copynumber: 3.5 Consensus size: 20
263030 AGCGTAGACC
* *
263040 CAGTGTAGATAGCCTATACT
1 CAGTCTAGATAGCCTAAACT
* *
263060 CAGTCTCGATAGCGTAAACT
1 CAGTCTAGATAGCCTAAACT
* *
263080 CAGTCTAGATTGCCTACACT
1 CAGTCTAGATAGCCTAAACT
263100 CAGTCTAGA
1 CAGTCTAGA
263109 CGCCATACTC
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 41 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.28
Consensus pattern (20 bp):
CAGTCTAGATAGCCTAAACT
Left flanking sequence: Indices 262540 -- 263039
CCAGGACGGGTCCACCGCGGTGTACGAGCTCAACACATTAAACAAGGTGGTCAAGATCGGGCTGT
TGGAGCGCCACCGGTCCGCGTGTACCGCGGTGGCGCTCGCTCCGCTGGGCAAGACCATTGCGGTG
GGCTCCAACGACGGAGCGGTGAGCTACTGGGAGCTGCGCACGTTGGGGCACGACCAGGTGCTTGC
CGATGTCGACGAGCCCGTGGCTGCGGTGGACATCAACGAGGACGGGTTGTTGGCGGTCAGCTTCG
ACGGCCGTGCCAACACCCGTGTCTACCGGGGCACCGAGCTCGTGTACGAGGTGCCCGAGTCTGCC
ACCACCACGTCGTGCGGGTTGGCGGCGTGGATGGGGCCCGAGAGGTTGGTTTACACTAGCGATAA
GGGCCGAGCCGTGAGCTTGCTCCGTCCCGAGACGGCACGGTCGCGGAAGTAGTGTGTGAGCCTAA
GAGGGCGTGTGTTGGCCTAAGGGTTGTCTGGATTGAGCGTAGACC
Right flanking sequence: Indices 263109 -- 263608
CGCCATACTCAGCCTAGACATCCATGCTCTGTCTAGACACCCTGAACCCAGTCTAGAAAGCCTGA
ATCCAGCCTAGACACCCTGAACCCAGTCTAGATAGCCGATACACCCCATATTCAACCTATACTCA
GCTCAGACCCAGTCAGACTCAGCCTACACCCCGCCTCGGGCCCACATATCGCCTAGATCTGGGCT
TACAGGCTGCATCACGCAGAGTTTTTTCAGTGACTACGAGGGCGAAAAGTAGCGCCACGCGACGC
GTCCACCCCATTAGCTAGAGATAATAACAACGTAACGAAAAGCGAAACGAAGGCTGCGTGGGCGC
GGGAGAGGCCGCCGTGGGCAGTTTGCTCGGTTCCACCGGCTTCTGCGCGCGGAACCGCCTAGTTC
CACCCGCTCCCTAGGGCGGGGCCATCCCGTAGCGTGAATAACCGAGAAGATCTCCTCACAATACC
TCTAAGCACCCGCGTCCCCCGCTACGCCTACTCTACACTGAACCG
Found at i:263074 original size:40 final size:40
Alignment explanation
Indices: 263030--263105 Score: 107
Period size: 40 Copynumber: 1.9 Consensus size: 40
263020 GTCTGGATTG
* * *
263030 AGCGTAGACCCAGTGTAGATAGCCTATACTCAGTCTCGAT
1 AGCGTAAACCCAGTCTAGATAGCCTACACTCAGTCTCGAT
* *
263070 AGCGTAAACTCAGTCTAGATTGCCTACACTCAGTCT
1 AGCGTAAACCCAGTCTAGATAGCCTACACTCAGTCT
263106 AGACGCCATA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (40 bp):
AGCGTAAACCCAGTCTAGATAGCCTACACTCAGTCTCGAT
Left flanking sequence: Indices 262530 -- 263029
TGTTGGCGAGCCAGGACGGGTCCACCGCGGTGTACGAGCTCAACACATTAAACAAGGTGGTCAAG
ATCGGGCTGTTGGAGCGCCACCGGTCCGCGTGTACCGCGGTGGCGCTCGCTCCGCTGGGCAAGAC
CATTGCGGTGGGCTCCAACGACGGAGCGGTGAGCTACTGGGAGCTGCGCACGTTGGGGCACGACC
AGGTGCTTGCCGATGTCGACGAGCCCGTGGCTGCGGTGGACATCAACGAGGACGGGTTGTTGGCG
GTCAGCTTCGACGGCCGTGCCAACACCCGTGTCTACCGGGGCACCGAGCTCGTGTACGAGGTGCC
CGAGTCTGCCACCACCACGTCGTGCGGGTTGGCGGCGTGGATGGGGCCCGAGAGGTTGGTTTACA
CTAGCGATAAGGGCCGAGCCGTGAGCTTGCTCCGTCCCGAGACGGCACGGTCGCGGAAGTAGTGT
GTGAGCCTAAGAGGGCGTGTGTTGGCCTAAGGGTTGTCTGGATTG
Right flanking sequence: Indices 263106 -- 263605
AGACGCCATACTCAGCCTAGACATCCATGCTCTGTCTAGACACCCTGAACCCAGTCTAGAAAGCC
TGAATCCAGCCTAGACACCCTGAACCCAGTCTAGATAGCCGATACACCCCATATTCAACCTATAC
TCAGCTCAGACCCAGTCAGACTCAGCCTACACCCCGCCTCGGGCCCACATATCGCCTAGATCTGG
GCTTACAGGCTGCATCACGCAGAGTTTTTTCAGTGACTACGAGGGCGAAAAGTAGCGCCACGCGA
CGCGTCCACCCCATTAGCTAGAGATAATAACAACGTAACGAAAAGCGAAACGAAGGCTGCGTGGG
CGCGGGAGAGGCCGCCGTGGGCAGTTTGCTCGGTTCCACCGGCTTCTGCGCGCGGAACCGCCTAG
TTCCACCCGCTCCCTAGGGCGGGGCCATCCCGTAGCGTGAATAACCGAGAAGATCTCCTCACAAT
ACCTCTAAGCACCCGCGTCCCCCGCTACGCCTACTCTACACTGAA
Found at i:263164 original size:20 final size:20
Alignment explanation
Indices: 263139--263205 Score: 98
Period size: 20 Copynumber: 3.4 Consensus size: 20
263129 TCCATGCTCT
263139 GTCTAGACACCCTGAACCCA
1 GTCTAGACACCCTGAACCCA
* * *
263159 GTCTAGAAAGCCTGAATCCA
1 GTCTAGACACCCTGAACCCA
*
263179 GCCTAGACACCCTGAACCCA
1 GTCTAGACACCCTGAACCCA
263199 GTCTAGA
1 GTCTAGA
263206 TAGCCGATAC
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.31, C:0.34, G:0.18, T:0.16
Consensus pattern (20 bp):
GTCTAGACACCCTGAACCCA
Left flanking sequence: Indices 262639 -- 263138
GCTCGCTCCGCTGGGCAAGACCATTGCGGTGGGCTCCAACGACGGAGCGGTGAGCTACTGGGAGC
TGCGCACGTTGGGGCACGACCAGGTGCTTGCCGATGTCGACGAGCCCGTGGCTGCGGTGGACATC
AACGAGGACGGGTTGTTGGCGGTCAGCTTCGACGGCCGTGCCAACACCCGTGTCTACCGGGGCAC
CGAGCTCGTGTACGAGGTGCCCGAGTCTGCCACCACCACGTCGTGCGGGTTGGCGGCGTGGATGG
GGCCCGAGAGGTTGGTTTACACTAGCGATAAGGGCCGAGCCGTGAGCTTGCTCCGTCCCGAGACG
GCACGGTCGCGGAAGTAGTGTGTGAGCCTAAGAGGGCGTGTGTTGGCCTAAGGGTTGTCTGGATT
GAGCGTAGACCCAGTGTAGATAGCCTATACTCAGTCTCGATAGCGTAAACTCAGTCTAGATTGCC
TACACTCAGTCTAGACGCCATACTCAGCCTAGACATCCATGCTCT
Right flanking sequence: Indices 263206 -- 263705
TAGCCGATACACCCCATATTCAACCTATACTCAGCTCAGACCCAGTCAGACTCAGCCTACACCCC
GCCTCGGGCCCACATATCGCCTAGATCTGGGCTTACAGGCTGCATCACGCAGAGTTTTTTCAGTG
ACTACGAGGGCGAAAAGTAGCGCCACGCGACGCGTCCACCCCATTAGCTAGAGATAATAACAACG
TAACGAAAAGCGAAACGAAGGCTGCGTGGGCGCGGGAGAGGCCGCCGTGGGCAGTTTGCTCGGTT
CCACCGGCTTCTGCGCGCGGAACCGCCTAGTTCCACCCGCTCCCTAGGGCGGGGCCATCCCGTAG
CGTGAATAACCGAGAAGATCTCCTCACAATACCTCTAAGCACCCGCGTCCCCCGCTACGCCTACT
CTACACTGAACCGAACCACCACTCTCCCGCGCTTCCCCCGGCCACCCTCGGCCTCCACCTGTGGC
GGTAGCGCAGGCATTGTTTTTTCCCCTTTTCGCCCGCTTTCGCTT
Found at i:267171 original size:18 final size:18
Alignment explanation
Indices: 267148--267199 Score: 86
Period size: 18 Copynumber: 2.9 Consensus size: 18
267138 GGAATAGGTG
267148 AGCGTAGGTGGGAAGGGA
1 AGCGTAGGTGGGAAGGGA
*
267166 AGCGTAGGTGGGAAGGGG
1 AGCGTAGGTGGGAAGGGA
*
267184 AGCGTAGGTGAGAAGG
1 AGCGTAGGTGGGAAGG
267200 CAACGAGGTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.27, C:0.06, G:0.56, T:0.12
Consensus pattern (18 bp):
AGCGTAGGTGGGAAGGGA
Left flanking sequence: Indices 266648 -- 267147
CCAAGTGCAATGGCGAGTTCATGGTCACCTGCTCGGTGGTGGTGTTGATCAAGTCGGCGAGCTTG
GGCTCGTCGTTCACCAGCGCTCTCACCTCGAGGAGAAGCTCGGTGTTGTCCCGACGGGCCGCCTC
CAAAAGTTGTTCACTCACAGAAGCCATGGTGGATGTGATGCGGTGTGAGTGGTGGTGGAAAGCGA
AAGGGCGGTGTGTAAGGCGAGTGGAATCAGTACCCGTGCAGAGGTGGTGGAAGAGCCAGGGACTA
GTGGTGGCAGTGTTGTACGCGAATCGATCAATTCGCTAGTGTGTGCGTAGCCCGGCCTGCAGGGA
CTTTTTACGACGCTTAGCGAGGACACTAAGGGTGGAGGGAGAGGGTAGAGGAGTGTTACAGAGCG
GTACGAGTGGGTATTTAGCAGACCCGTGGTGGCGGAAACGTGTCTTGCGCAGCTTAGCAGCTTAG
CGAGGTTGCGATCTGAGAATAATACGTCAAACTGCGGAATAGGTG
Right flanking sequence: Indices 267200 -- 267699
CAACGAGGTGGAAGTGAACGTGTAAGGGAACGAGGTGGGGGGAGGAGCTAGGTGAGAGGAGGACT
TAGGAGAAGAGGGCCTAGGTAAGAAGAGTGGGTTAGAGCACAGGTTACCTCCAATCGTGACTATT
AGTAATGAAGAATATGAACCCATTCTAGAATTAACGAAAGAAACAAAACACTACTTAATACCCTA
AAATAAGCTCCAACACTCTCCGATTAGCCTCAACCCCCGCTGATTGCACCCACCCCACACCAAAC
CCACACCCTTCCGCCTCCTGAAACGTCCCATACCGTCGTGCGCGTACCAGAACCACCACCGGGCG
CAACGGCGCACCGTCAGTTGCAGGAGCTGGCGAAAGAATTTGACTCCGATAACGGAGAATACATC
TCGCTGCGCGCATCCCCCTAAATCCCAGCCCAGGCTCCCTAGCCCCTACGTTGCTTTGTGTTTTA
TTGCGATACCCCACGAATCCAAACGTTTTCGCAGCTCCTGTTTTT
Found at i:268874 original size:10 final size:10
Alignment explanation
Indices: 268861--268894 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
268851 GCAATCCAGT
*
268861 CCAATTTAGC
1 CCAATTCAGC
268871 CCAATTCAGC
1 CCAATTCAGC
*
268881 CCAATTCAGT
1 CCAATTCAGC
268891 CCAA
1 CCAA
268895 ACCAATCCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.32, C:0.35, G:0.09, T:0.24
Consensus pattern (10 bp):
CCAATTCAGC
Left flanking sequence: Indices 268361 -- 268860
GACGCGGGCCAGCCGCAGCAGCGGTACGAGTTTGAGTCGTTTGACTACCAGCAGGAGGGCAACGC
CGCCCACCCCGAGCCCGCGGGCGACGCCCAGTACACCAACGGAGTCAAAAAGGAGTCTGGCGAGT
ACGCGCCCGAGGGCCGGTTTGAAGGCTCTGCATCGCCGTCGCAGCCCGGATACGAGGCCACCAAC
ACTGCGCGCGACGGTGCCAACGACGAGTACGCCTAACCACCACCAACCCTGAGGAGGGCCAGCCA
CCTGGCGAAAACCCGAAGGCTGTCGCTACGCACAGCTTCCGCAATGTATTATACTGTAACTATTC
TATAAATAAGATTCCCGGACCGGACGGTGGTGCCAATACCCGAGTCTTCCAGATAGTGTACTATA
TGCACATAGATCATTCACATAGTGTCTCAGTTGCGGGATTCTCAGTGGATACCTTATACCGATTT
TACCGTAAAAAACCAGAGGATACAGAGGATACCGGGCAATCCAGT
Right flanking sequence: Indices 268895 -- 269394
ACCAATCCAGTCCAGGCCAATCCGGTGTAACGCACTCCACCCCCTTCCACCCGTTTGCAGCCACA
GGGCTGGCTCGCAACCCCAGCCCGAATCATGCAATGCACGCGCTACCAACAATAGTTGCGCGATT
GCTCCAGTAAGGTGCAGCACAGGTCGAAAAACCTCTTGAACCTACCACCAGCCGTGAGTGAATTG
CGATGATGAATTGGCGGAGTTGTGTTAGTGTGGCCCGGTCAATGCCTCGGGTGCCCCGGGTGCGC
CGGTTGATCACGATTTCCCAGCTGCTCAACGACAGCTACACCAAGCACCAGGTGGTGCCGGATGT
GATTGACAAATTCGACACCCAGGGCCTTCTCCTGGTGGAGTACCTGCCGGAGAACAAGGTGACGC
TTGGCAACGAGTTGGCGGTCGACGCCACCCAGCAGGTGCCGTCGATTCTGTTCACGTTGAACAGC
CCCAACCAGGACGGCACCACCGAGAAATTGAACCCCAACGACAAG
Found at i:268894 original size:20 final size:20
Alignment explanation
Indices: 268852--268894 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
268842 GGATACCGGG
* *
268852 CAATCCAGTCCAATTTAGCC
1 CAATCCAGCCCAATTCAGCC
* *
268872 CAATTCAGCCCAATTCAGTC
1 CAATCCAGCCCAATTCAGCC
268892 CAA
1 CAA
268895 ACCAATCCAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.35, G:0.09, T:0.23
Consensus pattern (20 bp):
CAATCCAGCCCAATTCAGCC
Left flanking sequence: Indices 268352 -- 268851
GACAACTTGGACGCGGGCCAGCCGCAGCAGCGGTACGAGTTTGAGTCGTTTGACTACCAGCAGGA
GGGCAACGCCGCCCACCCCGAGCCCGCGGGCGACGCCCAGTACACCAACGGAGTCAAAAAGGAGT
CTGGCGAGTACGCGCCCGAGGGCCGGTTTGAAGGCTCTGCATCGCCGTCGCAGCCCGGATACGAG
GCCACCAACACTGCGCGCGACGGTGCCAACGACGAGTACGCCTAACCACCACCAACCCTGAGGAG
GGCCAGCCACCTGGCGAAAACCCGAAGGCTGTCGCTACGCACAGCTTCCGCAATGTATTATACTG
TAACTATTCTATAAATAAGATTCCCGGACCGGACGGTGGTGCCAATACCCGAGTCTTCCAGATAG
TGTACTATATGCACATAGATCATTCACATAGTGTCTCAGTTGCGGGATTCTCAGTGGATACCTTA
TACCGATTTTACCGTAAAAAACCAGAGGATACAGAGGATACCGGG
Right flanking sequence: Indices 268895 -- 269394
ACCAATCCAGTCCAGGCCAATCCGGTGTAACGCACTCCACCCCCTTCCACCCGTTTGCAGCCACA
GGGCTGGCTCGCAACCCCAGCCCGAATCATGCAATGCACGCGCTACCAACAATAGTTGCGCGATT
GCTCCAGTAAGGTGCAGCACAGGTCGAAAAACCTCTTGAACCTACCACCAGCCGTGAGTGAATTG
CGATGATGAATTGGCGGAGTTGTGTTAGTGTGGCCCGGTCAATGCCTCGGGTGCCCCGGGTGCGC
CGGTTGATCACGATTTCCCAGCTGCTCAACGACAGCTACACCAAGCACCAGGTGGTGCCGGATGT
GATTGACAAATTCGACACCCAGGGCCTTCTCCTGGTGGAGTACCTGCCGGAGAACAAGGTGACGC
TTGGCAACGAGTTGGCGGTCGACGCCACCCAGCAGGTGCCGTCGATTCTGTTCACGTTGAACAGC
CCCAACCAGGACGGCACCACCGAGAAATTGAACCCCAACGACAAG
Found at i:269860 original size:15 final size:15
Alignment explanation
Indices: 269832--269873 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
269822 TGCTTAGTAA
*
269832 GTATGGGGGAGCGATT
1 GTAT-GGGGTGCGATT
269848 GTATGGGGTGCGATT
1 GTATGGGGTGCGATT
269863 GTA--GGGTGCGA
1 GTATGGGGTGCGA
269874 CAGTTAAGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
13 8 0.32
15 13 0.52
16 4 0.16
ACGTcount: A:0.17, C:0.07, G:0.50, T:0.26
Consensus pattern (15 bp):
GTATGGGGTGCGATT
Left flanking sequence: Indices 269332 -- 269831
CTGTTCACGTTGAACAGCCCCAACCAGGACGGCACCACCGAGAAATTGAACCCCAACGACAAGTT
CCTTGTGGTGTTCACCGACCCCGACGCCCCCTCGAACCACGACCACAAGTGGCTGGAGTACTGCC
ACTGGGTGGCGGCCGACATCAAGTTGTCGCCTCCCAAGCTGGAGGATGACGTCATCCACACCATC
GACCCGGGTCTGGGGCTACAATTGGTGCCCTACGAGGGCCCGGCGCCGCCGCCCAACACGGGGAA
GCACCGGTATGTGTTTTTGTTGTACAAGCAGGCCGCGGGCGCCCAGTTTGGCTCCGAGGCGGCCC
CGAAGGACCGGCCCAACTGGGGCACGGGGATCGCTGGTCTGGGCGTTCGCGACTGGATTGCCAAG
AACGGGGCTGGTTCCAAGTTGCTTGGGGTCAACTTCTTCTACGCGAAAAACCCCACCCAGGACGA
CGCATGATGTGTAGGGTAGGCATGTAGCAATAAACTGCTTAGTAA
Right flanking sequence: Indices 269874 -- 270373
CAGTTAAGGTTTAAACGCTCGTATTGCGTAGATGTCAAGGTCGTCAGATATCAGGTCTATAGATA
TATCAAGGTCTAAATCTCAAGGTCTACATATATTTCAAGGTCTACATGTAAGTCTCAAAGTCTAC
TTAGATATCTTAGTTTTCTGTGAGTCTCGGTATCTAAATATTTCCTATTTGTTCGAAGTTTCTGG
ATATCTTACATGTTTCTTTGGACTTCTCTCAATCTTTTCAAAATCTCCGGATTTCCCAGAAATAT
TTCAAAAGTCTACCTTGATATCTCCTGGAATATTTCAGGTCTTCTTGGATATCTCCTTGGATATC
TCCTTGGCCCACTCCTTACATCTCCTTGAATGTTCTCATCTCCTTGAGTTATTGTCACCACCTAA
AAATGTCGCCAGGGGGAAAGTGTCGGCTCGGTAACGCACCAGTGACAGCACGCTCAATGGGTAAC
ATTGACGTACCCCACCACTCATCTTCCCCGCTCGTGTCTGTCCGA
Found at i:270194 original size:12 final size:12
Alignment explanation
Indices: 270177--270205 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
270167 TTCAGGTCTT
270177 CTTGGATATCTC
1 CTTGGATATCTC
270189 CTTGGATATCTC
1 CTTGGATATCTC
270201 CTTGG
1 CTTGG
270206 CCCACTCCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.14, C:0.24, G:0.21, T:0.41
Consensus pattern (12 bp):
CTTGGATATCTC
Left flanking sequence: Indices 269677 -- 270176
GGCACGGGGATCGCTGGTCTGGGCGTTCGCGACTGGATTGCCAAGAACGGGGCTGGTTCCAAGTT
GCTTGGGGTCAACTTCTTCTACGCGAAAAACCCCACCCAGGACGACGCATGATGTGTAGGGTAGG
CATGTAGCAATAAACTGCTTAGTAAGTATGGGGGAGCGATTGTATGGGGTGCGATTGTAGGGTGC
GACAGTTAAGGTTTAAACGCTCGTATTGCGTAGATGTCAAGGTCGTCAGATATCAGGTCTATAGA
TATATCAAGGTCTAAATCTCAAGGTCTACATATATTTCAAGGTCTACATGTAAGTCTCAAAGTCT
ACTTAGATATCTTAGTTTTCTGTGAGTCTCGGTATCTAAATATTTCCTATTTGTTCGAAGTTTCT
GGATATCTTACATGTTTCTTTGGACTTCTCTCAATCTTTTCAAAATCTCCGGATTTCCCAGAAAT
ATTTCAAAAGTCTACCTTGATATCTCCTGGAATATTTCAGGTCTT
Right flanking sequence: Indices 270206 -- 270705
CCCACTCCTTACATCTCCTTGAATGTTCTCATCTCCTTGAGTTATTGTCACCACCTAAAAATGTC
GCCAGGGGGAAAGTGTCGGCTCGGTAACGCACCAGTGACAGCACGCTCAATGGGTAACATTGACG
TACCCCACCACTCATCTTCCCCGCTCGTGTCTGTCCGACGCGTTGCCCACTATATAATGCGCCAC
CAGCCTCCTGGCACCAATGACCCAGTGCCCGATTTGCGAGTGCTGCACCTACCACATCCAGACCG
GGCACCACTGCCCGCAGTGCGGCGACCACGTCGACAAGTGCACCATGTGCAAACACTACTGCTGC
AACTGCCGCAAGCGGCCCGAGCGGTGGTTCCAGGACTTGTTGCATCAGCCGTTTGCGCAATAAGC
CCGCGTTAGCCTCGCTAAAGCCTCGCTAATCGAATACTCGATCTCAGCCTCGCTTATCGAATGCT
CGCTGATGCCTCGCTGATGCCTCACTGATGCCTACTGAACTAGCA
Found at i:270675 original size:11 final size:11
Alignment explanation
Indices: 270659--270693 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
270649 TTATCGAATG
270659 CTCGCTGATGC
1 CTCGCTGATGC
270670 CTCGCTGATGC
1 CTCGCTGATGC
*
270681 CTCACTGATGC
1 CTCGCTGATGC
270692 CT
1 CT
270694 ACTGAACTAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.11, C:0.37, G:0.23, T:0.29
Consensus pattern (11 bp):
CTCGCTGATGC
Left flanking sequence: Indices 270159 -- 270658
TGGAATATTTCAGGTCTTCTTGGATATCTCCTTGGATATCTCCTTGGCCCACTCCTTACATCTCC
TTGAATGTTCTCATCTCCTTGAGTTATTGTCACCACCTAAAAATGTCGCCAGGGGGAAAGTGTCG
GCTCGGTAACGCACCAGTGACAGCACGCTCAATGGGTAACATTGACGTACCCCACCACTCATCTT
CCCCGCTCGTGTCTGTCCGACGCGTTGCCCACTATATAATGCGCCACCAGCCTCCTGGCACCAAT
GACCCAGTGCCCGATTTGCGAGTGCTGCACCTACCACATCCAGACCGGGCACCACTGCCCGCAGT
GCGGCGACCACGTCGACAAGTGCACCATGTGCAAACACTACTGCTGCAACTGCCGCAAGCGGCCC
GAGCGGTGGTTCCAGGACTTGTTGCATCAGCCGTTTGCGCAATAAGCCCGCGTTAGCCTCGCTAA
AGCCTCGCTAATCGAATACTCGATCTCAGCCTCGCTTATCGAATG
Right flanking sequence: Indices 270694 -- 271193
ACTGAACTAGCAACTCGCTAATCACACCGCTATCCAATCTCTCCGCTTCCAACCTCTCCGCTACC
CAACCTCTCCGCTACCCAACCTCTCCGCTTCCAACCTCTCCGCTTCCAACCCCTCCGCTTCCAAC
CCCTCCACTTCCAACCCCTCCCCCACTATTCTCCTGATAATTCGTTCATTCAATAGGTAGTCACC
AGTACACGACCATATCCCGATATAAAAACTAAACAAAAACGCTACAAGTTCAAGTCGCCGATGAT
GCGGTCGGCCAAGTGCTTGTAGTTCCAGGTGTTGCCGACAATCTTTTTGAGAATGAGCGCGTGCA
AGTTGAGAATGGGCACCTTGACGATCTCGATCTGGAAGTTGACGGGGGTGCGCCGCACCGGCTGC
TTCAGCGTCGACAGCACCAGCGACAGGTGCTGGTGGCGCGCCCGCTGCTCGATCCGCGACGAGAT
CAACATGTCGGACCCGCCCTGCACCGCGAGCCCGTTGATCAGGTC
Found at i:270750 original size:15 final size:15
Alignment explanation
Indices: 270720--270844 Score: 160
Period size: 15 Copynumber: 8.1 Consensus size: 15
270710 GCTAATCACA
*
270720 CCGCTATCCAATCTCT
1 CCGCT-TCCAACCTCT
270736 CCGCTTCCAACCTCT
1 CCGCTTCCAACCTCT
*
270751 CCGCTACCCAACCTCT
1 CCGCT-TCCAACCTCT
*
270767 CCGCTACCCAACCTCT
1 CCGCT-TCCAACCTCT
270783 CCGCTTCCAACCTCT
1 CCGCTTCCAACCTCT
*
270798 CCGCTTCCAACCCCT
1 CCGCTTCCAACCTCT
*
270813 CCGCTTCCAACCCCT
1 CCGCTTCCAACCTCT
* *
270828 CCACTTCCAACCCCT
1 CCGCTTCCAACCTCT
270843 CC
1 CC
270845 CCCACTATTC
Statistics
Matches: 103, Mismatches: 5, Indels: 3
0.93 0.05 0.03
Matches are distributed among these distances:
15 68 0.66
16 35 0.34
ACGTcount: A:0.16, C:0.56, G:0.06, T:0.22
Consensus pattern (15 bp):
CCGCTTCCAACCTCT
Left flanking sequence: Indices 270220 -- 270719
CTCCTTGAATGTTCTCATCTCCTTGAGTTATTGTCACCACCTAAAAATGTCGCCAGGGGGAAAGT
GTCGGCTCGGTAACGCACCAGTGACAGCACGCTCAATGGGTAACATTGACGTACCCCACCACTCA
TCTTCCCCGCTCGTGTCTGTCCGACGCGTTGCCCACTATATAATGCGCCACCAGCCTCCTGGCAC
CAATGACCCAGTGCCCGATTTGCGAGTGCTGCACCTACCACATCCAGACCGGGCACCACTGCCCG
CAGTGCGGCGACCACGTCGACAAGTGCACCATGTGCAAACACTACTGCTGCAACTGCCGCAAGCG
GCCCGAGCGGTGGTTCCAGGACTTGTTGCATCAGCCGTTTGCGCAATAAGCCCGCGTTAGCCTCG
CTAAAGCCTCGCTAATCGAATACTCGATCTCAGCCTCGCTTATCGAATGCTCGCTGATGCCTCGC
TGATGCCTCACTGATGCCTACTGAACTAGCAACTCGCTAATCACA
Right flanking sequence: Indices 270845 -- 271344
CCCACTATTCTCCTGATAATTCGTTCATTCAATAGGTAGTCACCAGTACACGACCATATCCCGAT
ATAAAAACTAAACAAAAACGCTACAAGTTCAAGTCGCCGATGATGCGGTCGGCCAAGTGCTTGTA
GTTCCAGGTGTTGCCGACAATCTTTTTGAGAATGAGCGCGTGCAAGTTGAGAATGGGCACCTTGA
CGATCTCGATCTGGAAGTTGACGGGGGTGCGCCGCACCGGCTGCTTCAGCGTCGACAGCACCAGC
GACAGGTGCTGGTGGCGCGCCCGCTGCTCGATCCGCGACGAGATCAACATGTCGGACCCGCCCTG
CACCGCGAGCCCGTTGATCAGGTCGATGGAGTCGTCGATCACCGGCACCGGCGCGAGGTGGGCGC
GGAACGCGTCGGAGTCGTCGGTGAGGTCGACGTCGTCGGCAAACCCGCGCATCGCCTTGGCGGCT
GCGGGCGTCAGCGGCGGCATCTGGGTGTTGTCGCCGTTGCGCTTT
Found at i:270783 original size:47 final size:46
Alignment explanation
Indices: 270720--270844 Score: 171
Period size: 47 Copynumber: 2.7 Consensus size: 46
270710 GCTAATCACA
* *
270720 CCGCTATCCAATCTCTCCGCTTCCAACCTCTCCGCTACCCAACCTCT
1 CCGCTATCCAACCTCTCCGCTTCCAACCTCTCCGCT-CCCAACCCCT
* *
270767 CCGCTACCCAACCTCTCCGCTTCCAACCTCTCCGCTTCCAACCCCT
1 CCGCTATCCAACCTCTCCGCTTCCAACCTCTCCGCTCCCAACCCCT
* * *
270813 CCGCT-TCCAACCCCTCCACTTCCAACCCCTCC
1 CCGCTATCCAACCTCTCCGCTTCCAACCTCTCC
270845 CCCACTATTC
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
45 23 0.33
46 13 0.19
47 34 0.49
ACGTcount: A:0.16, C:0.56, G:0.06, T:0.22
Consensus pattern (46 bp):
CCGCTATCCAACCTCTCCGCTTCCAACCTCTCCGCTCCCAACCCCT
Left flanking sequence: Indices 270220 -- 270719
CTCCTTGAATGTTCTCATCTCCTTGAGTTATTGTCACCACCTAAAAATGTCGCCAGGGGGAAAGT
GTCGGCTCGGTAACGCACCAGTGACAGCACGCTCAATGGGTAACATTGACGTACCCCACCACTCA
TCTTCCCCGCTCGTGTCTGTCCGACGCGTTGCCCACTATATAATGCGCCACCAGCCTCCTGGCAC
CAATGACCCAGTGCCCGATTTGCGAGTGCTGCACCTACCACATCCAGACCGGGCACCACTGCCCG
CAGTGCGGCGACCACGTCGACAAGTGCACCATGTGCAAACACTACTGCTGCAACTGCCGCAAGCG
GCCCGAGCGGTGGTTCCAGGACTTGTTGCATCAGCCGTTTGCGCAATAAGCCCGCGTTAGCCTCG
CTAAAGCCTCGCTAATCGAATACTCGATCTCAGCCTCGCTTATCGAATGCTCGCTGATGCCTCGC
TGATGCCTCACTGATGCCTACTGAACTAGCAACTCGCTAATCACA
Right flanking sequence: Indices 270845 -- 271344
CCCACTATTCTCCTGATAATTCGTTCATTCAATAGGTAGTCACCAGTACACGACCATATCCCGAT
ATAAAAACTAAACAAAAACGCTACAAGTTCAAGTCGCCGATGATGCGGTCGGCCAAGTGCTTGTA
GTTCCAGGTGTTGCCGACAATCTTTTTGAGAATGAGCGCGTGCAAGTTGAGAATGGGCACCTTGA
CGATCTCGATCTGGAAGTTGACGGGGGTGCGCCGCACCGGCTGCTTCAGCGTCGACAGCACCAGC
GACAGGTGCTGGTGGCGCGCCCGCTGCTCGATCCGCGACGAGATCAACATGTCGGACCCGCCCTG
CACCGCGAGCCCGTTGATCAGGTCGATGGAGTCGTCGATCACCGGCACCGGCGCGAGGTGGGCGC
GGAACGCGTCGGAGTCGTCGGTGAGGTCGACGTCGTCGGCAAACCCGCGCATCGCCTTGGCGGCT
GCGGGCGTCAGCGGCGGCATCTGGGTGTTGTCGCCGTTGCGCTTT
Found at i:272514 original size:21 final size:21
Alignment explanation
Indices: 272490--272540 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
272480 GCTCCTCGGA
272490 CGGCACCGGGTCGTTGAACCG
1 CGGCACCGGGTCGTTGAACCG
272511 CGGCACCGGGTCGTTGAACCG
1 CGGCACCGGGTCGTTGAACCG
272532 CGGCACCGG
1 CGGCACCGG
272541 CTCCGCCATC
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.14, C:0.35, G:0.39, T:0.12
Consensus pattern (21 bp):
CGGCACCGGGTCGTTGAACCG
Left flanking sequence: Indices 271990 -- 272489
CCCGCCAACCCCTCGCGCGGCACCCGCAGCCCGTACAGGTCCTTGCGGATGTGTCCGCCCACGGA
CTTGGCCCGGGCGGTGGGGTGGAACTTGCGCCGCAACAGCGCCAGCGGCGCCACGCCGGGCACCT
GGAGGCTGTTGCCGTAGCCGGGAGTGGCCACGTAGCTGGGCGACGCCAGGTTGGCTGCCGACGAC
CCCAGCCCGTGCGACAGCGTCAGGATGTTGGGCAACGGCGGCAAGTACTCCACGGGGACGAACCC
GTGCGCGCCCTTCAGCAGGTGCGACCGGTGGTGGCCCAGCTTGCGCGGGCCCTGGCGCCACTTGT
CTGCGGGCGGGTTGATTTTCTCCTTGGCCGTCACCTTCATCAGCACGCCGCGGCGCACGAGCGGG
TCCTTGCGTGGCGAGCCGTCCGCTGTGGGCAGCGTGGGCCGCCGCTTGCTCGACAACCGCCGCAA
CAAGTTGTTGATGCCGCCTCTGGCGGGCAGCAGCGGCTCCTCGGA
Right flanking sequence: Indices 272541 -- 273040
CTCCGCCATCGGCAGCGCCAACTGCGGTGCGGCGCCGTAGTCGTAGTCGGGCCCGTAGTCGCCCG
GGTTGTGCACGGGCTCTGGGAACAGCAACGGGGCGATCTCCGGGTTGGCGTCCAACGCGCGGAAC
ACGTCGTCGAGGCCCAGCAGCGGCAGCAGCCGCGAGCCCAGGATCTGGCCCAGCCGCACCGTGGT
GCGTTTGCTCGGGGTGTCTGGGCCGGGCAGGGTGATGACGTTGATGTCGTTCTTGCCCGGGTCCT
CGCCCGGTTCGGGCGAGTTGCCGACGATGGCGGTGTGGCGGTGGGCGGTGCGCTGCGACCGCACG
TCGTCGGGCGATGCGGGCGAGCGGGCCGACGGCAGCGGGTGGGCGCGAGGCGTGTGCACCATGGT
GGGGGTGGCCACCAGCTCGGGCAGGCCCACGGGGGGCTTGCGGGTGAGCGTCTGCAGCCGCACCG
GGCCCGAGAGCGGTGGGGTGGCGGCGAGGTGGGCCGGGTTGGCGG
Found at i:273174 original size:9 final size:9
Alignment explanation
Indices: 273162--273206 Score: 81
Period size: 9 Copynumber: 5.0 Consensus size: 9
273152 TGGGAATGGA
273162 TCCAGTAGG
1 TCCAGTAGG
273171 TCCAGTAGG
1 TCCAGTAGG
*
273180 CCCAGTAGG
1 TCCAGTAGG
273189 TCCAGTAGG
1 TCCAGTAGG
273198 TCCAGTAGG
1 TCCAGTAGG
273207 CCCGGTGGAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
9 34 1.00
ACGTcount: A:0.22, C:0.24, G:0.33, T:0.20
Consensus pattern (9 bp):
TCCAGTAGG
Left flanking sequence: Indices 272662 -- 273161
GCGCGGAACACGTCGTCGAGGCCCAGCAGCGGCAGCAGCCGCGAGCCCAGGATCTGGCCCAGCCG
CACCGTGGTGCGTTTGCTCGGGGTGTCTGGGCCGGGCAGGGTGATGACGTTGATGTCGTTCTTGC
CCGGGTCCTCGCCCGGTTCGGGCGAGTTGCCGACGATGGCGGTGTGGCGGTGGGCGGTGCGCTGC
GACCGCACGTCGTCGGGCGATGCGGGCGAGCGGGCCGACGGCAGCGGGTGGGCGCGAGGCGTGTG
CACCATGGTGGGGGTGGCCACCAGCTCGGGCAGGCCCACGGGGGGCTTGCGGGTGAGCGTCTGCA
GCCGCACCGGGCCCGAGAGCGGTGGGGTGGCGGCGAGGTGGGCCGGGTTGGCGGTGTTGGCCACC
ACGGGTTCGCGGGTGGGAATGGGGTCGCGGTTGGTGGGGATGGGGCCGGGAATGGGTCCAGGACC
GGTGGTAATGGGTCCCGTGGGTCCCGTGGGACCAGTGGGAATGGA
Right flanking sequence: Indices 273207 -- 273706
CCCGGTGGAAATGGGTCCGGGCACAGAACCAGGAATGGCGCCGGGCACAGAACCAGGCACTCCGG
TGGCCGGGCCGGGCACAGAACCGGTCGCTGCGGCAACAGAACCAACGGCTCCAGCCCGTGACGCC
GCCTCCGCCTCCACCGCCTCCGGCGGCAGCGTGGTAATCGTCGGCTTGGCTTCCGCCGCCGCCTT
CTCCTCCACCGCCGCCTTCTCCTTCTGCGCGCGAATGGCATCCTCCTTGGCCTTCTTGCGCTTCT
TCATCTCGTCCACCAAGAAATAGATCAGAATCAACGGGTGGAACCCGCCGGTGGGGTCGGGCAAG
AGGTGGGCGTTCAGCGCCAGCGCGTAGTCGCGGCCCTGGTCCGCAAGCTTCTGCCAGTTCTCGCA
GCTCATCTGGTACTCCACCAGCGTCAACACCGCGGTGAGCTCGTCGGTGATCAGCGCCACCAGCC
CGAGGTCAAACAGGGCAATCGTCTTGACGATGTCGGGGTCGAGCG
Found at i:274676 original size:16 final size:15
Alignment explanation
Indices: 274655--274694 Score: 53
Period size: 15 Copynumber: 2.6 Consensus size: 15
274645 GAGGGCTGGG
274655 AGGGGTCGGTCTGGCC
1 AGGGGT-GGTCTGGCC
*
274671 AGGGGTGGTCTTGCC
1 AGGGGTGGTCTGGCC
*
274686 GGGGGTGGT
1 AGGGGTGGT
274695 GGACTGGGTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 16 0.73
16 6 0.27
ACGTcount: A:0.05, C:0.17, G:0.55, T:0.23
Consensus pattern (15 bp):
AGGGGTGGTCTGGCC
Left flanking sequence: Indices 274155 -- 274654
GTCGCGGTGCACCACGTTGTTGCGGTGGCAGTACTCGAGCGCCAGCGCGATGCCGCGGGCAAACT
TGCGGGCGTGCTTTTCCTTGAGCAGCCCGTGGGCGACGATGTAGTCGAGCATCTGCCCGCCCTCG
ACGTACTCAAACAACATGTAGTAGTGGTTGGTCATGGGCACCATCTCGTACAACCGGCAGATGAA
CGGGTGGAAGAGGAGCCGCCCGAGCGCGCCCTCGCGGATGGTGCGTTTGTCGCGGGCCATCTCCT
TCTCGAACTCCTTCTGGCGCTGCATCGCCTCCTGCGGCAGCGCGGGCGGCGGGTCGGCGGCGTGG
GCCCGCTGGTAGAGCTTGGCGGCGCGCGGGATGATTTTGACGGCGCAGATCTCGTGCAGTTGTTT
GTGGAATGCTAGTTTGACCTTGCCCATCAGCCCGGCGCCGATGGTGCGGATGAAGTCCCAGTCGC
CGATCGACTTGCGGTGGAACTGTTGCTGGCGCTTGGAGGGCTGGG
Right flanking sequence: Indices 274695 -- 275194
GGACTGGGTGGGTTGGCCGGGCTGGCCGGTAGACTGGGCTGGGGTAGCCTGGCCAGGCGCAGGTT
GCGATCCCTGGTGAGGCTGGGCATGAGAGTGGCCGTGGTGACCAGATTGGCCAGAATGACCAGAT
TGGCCGTGGTAACCAGATTGGCCGTGGCCTTGGCCAGATTGGCTGTGGCCGTGGCTAGACTGGCC
GTGGGCAGCATGACCATGGGATTGGCTTGGCTGGCCAGAGTGGCTGGAATGGTTTTGACCAGAAT
GGCCAGATTGACCAGATTGACCAGAATAGCCGGACTGACCAGAGTATCCAGCCAGCCCAGAGTAT
CCAGACTGTCCAGAGTATCCAGCCTGTCCACCCCGTTCCACCTCTTCTTCAGCAATGCTCCGGGG
GTTCTTTCCCCCCAGATACTGCAGCGACAGCTGCGACGGGCGGCGGGCCGGGCCCCACGGCGGCG
CCTGGCCCGCGGGCGGCAACAACTCGCGCTTCAACGAGCCATTGG
Found at i:274839 original size:18 final size:18
Alignment explanation
Indices: 274789--274851 Score: 83
Period size: 18 Copynumber: 3.5 Consensus size: 18
274779 GGCATGAGAG
274789 TGGCCGTGGTGACCAGAT
1 TGGCCGTGGTGACCAGAT
**
274807 TGGCCAG-AATGACCAGAT
1 TGGCC-GTGGTGACCAGAT
*
274825 TGGCCGTGGTAACCAGAT
1 TGGCCGTGGTGACCAGAT
274843 TGGCCGTGG
1 TGGCCGTGG
274852 CCTTGGCCAG
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
17 1 0.03
18 36 0.95
19 1 0.03
ACGTcount: A:0.21, C:0.22, G:0.37, T:0.21
Consensus pattern (18 bp):
TGGCCGTGGTGACCAGAT
Left flanking sequence: Indices 274289 -- 274788
ACTCAAACAACATGTAGTAGTGGTTGGTCATGGGCACCATCTCGTACAACCGGCAGATGAACGGG
TGGAAGAGGAGCCGCCCGAGCGCGCCCTCGCGGATGGTGCGTTTGTCGCGGGCCATCTCCTTCTC
GAACTCCTTCTGGCGCTGCATCGCCTCCTGCGGCAGCGCGGGCGGCGGGTCGGCGGCGTGGGCCC
GCTGGTAGAGCTTGGCGGCGCGCGGGATGATTTTGACGGCGCAGATCTCGTGCAGTTGTTTGTGG
AATGCTAGTTTGACCTTGCCCATCAGCCCGGCGCCGATGGTGCGGATGAAGTCCCAGTCGCCGAT
CGACTTGCGGTGGAACTGTTGCTGGCGCTTGGAGGGCTGGGAGGGGTCGGTCTGGCCAGGGGTGG
TCTTGCCGGGGGTGGTGGACTGGGTGGGTTGGCCGGGCTGGCCGGTAGACTGGGCTGGGGTAGCC
TGGCCAGGCGCAGGTTGCGATCCCTGGTGAGGCTGGGCATGAGAG
Right flanking sequence: Indices 274852 -- 275351
CCTTGGCCAGATTGGCTGTGGCCGTGGCTAGACTGGCCGTGGGCAGCATGACCATGGGATTGGCT
TGGCTGGCCAGAGTGGCTGGAATGGTTTTGACCAGAATGGCCAGATTGACCAGATTGACCAGAAT
AGCCGGACTGACCAGAGTATCCAGCCAGCCCAGAGTATCCAGACTGTCCAGAGTATCCAGCCTGT
CCACCCCGTTCCACCTCTTCTTCAGCAATGCTCCGGGGGTTCTTTCCCCCCAGATACTGCAGCGA
CAGCTGCGACGGGCGGCGGGCCGGGCCCCACGGCGGCGCCTGGCCCGCGGGCGGCAACAACTCGC
GCTTCAACGAGCCATTGGACCCGTCGCCAGACCCGCCCAGCACCCGGCTCTGGTCCTCGCGGCTG
CGTAGGGTGCCGCTGACCAGCCGGAGCATGCGGGCGGTGGCGGGTTGGTTCTTTTGCTGGGCCTG
GGCCGAGTGGGCGTGGGACGGCGCCTGGCCCGAGGCGCCGCCGCC
Found at i:274863 original size:21 final size:21
Alignment explanation
Indices: 274837--274893 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 21
274827 GCCGTGGTAA
*
274837 CCAGATTGGCCGTGGCCTTGG
1 CCAGATTGGCCGTGGCCGTGG
*
274858 CCAGATTGGCTGTGGCCGTGG
1 CCAGATTGGCCGTGGCCGTGG
* *
274879 CTAGACTGGCCGTGG
1 CCAGATTGGCCGTGG
274894 GCAGCATGAC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.11, C:0.26, G:0.40, T:0.23
Consensus pattern (21 bp):
CCAGATTGGCCGTGGCCGTGG
Left flanking sequence: Indices 274337 -- 274836
ACCGGCAGATGAACGGGTGGAAGAGGAGCCGCCCGAGCGCGCCCTCGCGGATGGTGCGTTTGTCG
CGGGCCATCTCCTTCTCGAACTCCTTCTGGCGCTGCATCGCCTCCTGCGGCAGCGCGGGCGGCGG
GTCGGCGGCGTGGGCCCGCTGGTAGAGCTTGGCGGCGCGCGGGATGATTTTGACGGCGCAGATCT
CGTGCAGTTGTTTGTGGAATGCTAGTTTGACCTTGCCCATCAGCCCGGCGCCGATGGTGCGGATG
AAGTCCCAGTCGCCGATCGACTTGCGGTGGAACTGTTGCTGGCGCTTGGAGGGCTGGGAGGGGTC
GGTCTGGCCAGGGGTGGTCTTGCCGGGGGTGGTGGACTGGGTGGGTTGGCCGGGCTGGCCGGTAG
ACTGGGCTGGGGTAGCCTGGCCAGGCGCAGGTTGCGATCCCTGGTGAGGCTGGGCATGAGAGTGG
CCGTGGTGACCAGATTGGCCAGAATGACCAGATTGGCCGTGGTAA
Right flanking sequence: Indices 274894 -- 275393
GCAGCATGACCATGGGATTGGCTTGGCTGGCCAGAGTGGCTGGAATGGTTTTGACCAGAATGGCC
AGATTGACCAGATTGACCAGAATAGCCGGACTGACCAGAGTATCCAGCCAGCCCAGAGTATCCAG
ACTGTCCAGAGTATCCAGCCTGTCCACCCCGTTCCACCTCTTCTTCAGCAATGCTCCGGGGGTTC
TTTCCCCCCAGATACTGCAGCGACAGCTGCGACGGGCGGCGGGCCGGGCCCCACGGCGGCGCCTG
GCCCGCGGGCGGCAACAACTCGCGCTTCAACGAGCCATTGGACCCGTCGCCAGACCCGCCCAGCA
CCCGGCTCTGGTCCTCGCGGCTGCGTAGGGTGCCGCTGACCAGCCGGAGCATGCGGGCGGTGGCG
GGTTGGTTCTTTTGCTGGGCCTGGGCCGAGTGGGCGTGGGACGGCGCCTGGCCCGAGGCGCCGCC
GCCATACGACGGTTCTACCGCGGGGGCGTCCATCGAGGATGGGGA
Found at i:274969 original size:9 final size:9
Alignment explanation
Indices: 274944--274979 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
274934 TGGAATGGTT
274944 TTGACCAGA
1 TTGACCAGA
* *
274953 ATGGCCAGA
1 TTGACCAGA
274962 TTGACCAGA
1 TTGACCAGA
274971 TTGACCAGA
1 TTGACCAGA
274980 ATAGCCGGAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.33, C:0.22, G:0.25, T:0.19
Consensus pattern (9 bp):
TTGACCAGA
Left flanking sequence: Indices 274444 -- 274943
TCCTGCGGCAGCGCGGGCGGCGGGTCGGCGGCGTGGGCCCGCTGGTAGAGCTTGGCGGCGCGCGG
GATGATTTTGACGGCGCAGATCTCGTGCAGTTGTTTGTGGAATGCTAGTTTGACCTTGCCCATCA
GCCCGGCGCCGATGGTGCGGATGAAGTCCCAGTCGCCGATCGACTTGCGGTGGAACTGTTGCTGG
CGCTTGGAGGGCTGGGAGGGGTCGGTCTGGCCAGGGGTGGTCTTGCCGGGGGTGGTGGACTGGGT
GGGTTGGCCGGGCTGGCCGGTAGACTGGGCTGGGGTAGCCTGGCCAGGCGCAGGTTGCGATCCCT
GGTGAGGCTGGGCATGAGAGTGGCCGTGGTGACCAGATTGGCCAGAATGACCAGATTGGCCGTGG
TAACCAGATTGGCCGTGGCCTTGGCCAGATTGGCTGTGGCCGTGGCTAGACTGGCCGTGGGCAGC
ATGACCATGGGATTGGCTTGGCTGGCCAGAGTGGCTGGAATGGTT
Right flanking sequence: Indices 274980 -- 275479
ATAGCCGGACTGACCAGAGTATCCAGCCAGCCCAGAGTATCCAGACTGTCCAGAGTATCCAGCCT
GTCCACCCCGTTCCACCTCTTCTTCAGCAATGCTCCGGGGGTTCTTTCCCCCCAGATACTGCAGC
GACAGCTGCGACGGGCGGCGGGCCGGGCCCCACGGCGGCGCCTGGCCCGCGGGCGGCAACAACTC
GCGCTTCAACGAGCCATTGGACCCGTCGCCAGACCCGCCCAGCACCCGGCTCTGGTCCTCGCGGC
TGCGTAGGGTGCCGCTGACCAGCCGGAGCATGCGGGCGGTGGCGGGTTGGTTCTTTTGCTGGGCC
TGGGCCGAGTGGGCGTGGGACGGCGCCTGGCCCGAGGCGCCGCCGCCATACGACGGTTCTACCGC
GGGGGCGTCCATCGAGGATGGGGATTAGCTGGGCAACGGCTGGGGAGCAAACTCAGCGATAACGG
CCACGTAGATGCAGTGGCAAACAGAAAACCCGGGGACAGAGGGAG
Found at i:274976 original size:27 final size:27
Alignment explanation
Indices: 274944--274997 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
274934 TGGAATGGTT
* *
274944 TTGACCAGAATGGCCAGATTGACCAGA
1 TTGACCAGAATAGCCAGACTGACCAGA
*
274971 TTGACCAGAATAGCCGGACTGACCAGA
1 TTGACCAGAATAGCCAGACTGACCAGA
274998 GTATCCAGCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.33, C:0.24, G:0.26, T:0.17
Consensus pattern (27 bp):
TTGACCAGAATAGCCAGACTGACCAGA
Left flanking sequence: Indices 274444 -- 274943
TCCTGCGGCAGCGCGGGCGGCGGGTCGGCGGCGTGGGCCCGCTGGTAGAGCTTGGCGGCGCGCGG
GATGATTTTGACGGCGCAGATCTCGTGCAGTTGTTTGTGGAATGCTAGTTTGACCTTGCCCATCA
GCCCGGCGCCGATGGTGCGGATGAAGTCCCAGTCGCCGATCGACTTGCGGTGGAACTGTTGCTGG
CGCTTGGAGGGCTGGGAGGGGTCGGTCTGGCCAGGGGTGGTCTTGCCGGGGGTGGTGGACTGGGT
GGGTTGGCCGGGCTGGCCGGTAGACTGGGCTGGGGTAGCCTGGCCAGGCGCAGGTTGCGATCCCT
GGTGAGGCTGGGCATGAGAGTGGCCGTGGTGACCAGATTGGCCAGAATGACCAGATTGGCCGTGG
TAACCAGATTGGCCGTGGCCTTGGCCAGATTGGCTGTGGCCGTGGCTAGACTGGCCGTGGGCAGC
ATGACCATGGGATTGGCTTGGCTGGCCAGAGTGGCTGGAATGGTT
Right flanking sequence: Indices 274998 -- 275497
GTATCCAGCCAGCCCAGAGTATCCAGACTGTCCAGAGTATCCAGCCTGTCCACCCCGTTCCACCT
CTTCTTCAGCAATGCTCCGGGGGTTCTTTCCCCCCAGATACTGCAGCGACAGCTGCGACGGGCGG
CGGGCCGGGCCCCACGGCGGCGCCTGGCCCGCGGGCGGCAACAACTCGCGCTTCAACGAGCCATT
GGACCCGTCGCCAGACCCGCCCAGCACCCGGCTCTGGTCCTCGCGGCTGCGTAGGGTGCCGCTGA
CCAGCCGGAGCATGCGGGCGGTGGCGGGTTGGTTCTTTTGCTGGGCCTGGGCCGAGTGGGCGTGG
GACGGCGCCTGGCCCGAGGCGCCGCCGCCATACGACGGTTCTACCGCGGGGGCGTCCATCGAGGA
TGGGGATTAGCTGGGCAACGGCTGGGGAGCAAACTCAGCGATAACGGCCACGTAGATGCAGTGGC
AAACAGAAAACCCGGGGACAGAGGGAGCGGGTCACACACAGTAGG
Found at i:275015 original size:36 final size:36
Alignment explanation
Indices: 274975--275043 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 36
274965 ACCAGATTGA
*
274975 CCAGAATAGCCGGACTGACCAGAGTATCCAGCCAGC
1 CCAGAATAGCCAGACTGACCAGAGTATCCAGCCAGC
* * *
275011 CCAGAGTATCCAGACTGTCCAGAGTATCCAGCC
1 CCAGAATAGCCAGACTGACCAGAGTATCCAGCC
275044 TGTCCACCCC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.29, C:0.33, G:0.23, T:0.14
Consensus pattern (36 bp):
CCAGAATAGCCAGACTGACCAGAGTATCCAGCCAGC
Left flanking sequence: Indices 274475 -- 274974
CGTGGGCCCGCTGGTAGAGCTTGGCGGCGCGCGGGATGATTTTGACGGCGCAGATCTCGTGCAGT
TGTTTGTGGAATGCTAGTTTGACCTTGCCCATCAGCCCGGCGCCGATGGTGCGGATGAAGTCCCA
GTCGCCGATCGACTTGCGGTGGAACTGTTGCTGGCGCTTGGAGGGCTGGGAGGGGTCGGTCTGGC
CAGGGGTGGTCTTGCCGGGGGTGGTGGACTGGGTGGGTTGGCCGGGCTGGCCGGTAGACTGGGCT
GGGGTAGCCTGGCCAGGCGCAGGTTGCGATCCCTGGTGAGGCTGGGCATGAGAGTGGCCGTGGTG
ACCAGATTGGCCAGAATGACCAGATTGGCCGTGGTAACCAGATTGGCCGTGGCCTTGGCCAGATT
GGCTGTGGCCGTGGCTAGACTGGCCGTGGGCAGCATGACCATGGGATTGGCTTGGCTGGCCAGAG
TGGCTGGAATGGTTTTGACCAGAATGGCCAGATTGACCAGATTGA
Right flanking sequence: Indices 275044 -- 275543
TGTCCACCCCGTTCCACCTCTTCTTCAGCAATGCTCCGGGGGTTCTTTCCCCCCAGATACTGCAG
CGACAGCTGCGACGGGCGGCGGGCCGGGCCCCACGGCGGCGCCTGGCCCGCGGGCGGCAACAACT
CGCGCTTCAACGAGCCATTGGACCCGTCGCCAGACCCGCCCAGCACCCGGCTCTGGTCCTCGCGG
CTGCGTAGGGTGCCGCTGACCAGCCGGAGCATGCGGGCGGTGGCGGGTTGGTTCTTTTGCTGGGC
CTGGGCCGAGTGGGCGTGGGACGGCGCCTGGCCCGAGGCGCCGCCGCCATACGACGGTTCTACCG
CGGGGGCGTCCATCGAGGATGGGGATTAGCTGGGCAACGGCTGGGGAGCAAACTCAGCGATAACG
GCCACGTAGATGCAGTGGCAAACAGAAAACCCGGGGACAGAGGGAGCGGGTCACACACAGTAGGA
GCCTAGGTACGCTTGAAACAACAACAGCTCCAGCGGCAATTAACA
Found at i:275046 original size:18 final size:18
Alignment explanation
Indices: 274993--275049 Score: 87
Period size: 18 Copynumber: 3.2 Consensus size: 18
274983 GCCGGACTGA
* *
274993 CCAGAGTATCCAGCCAGC
1 CCAGAGTATCCAGCCTGT
*
275011 CCAGAGTATCCAGACTGT
1 CCAGAGTATCCAGCCTGT
275029 CCAGAGTATCCAGCCTGT
1 CCAGAGTATCCAGCCTGT
275047 CCA
1 CCA
275050 CCCCGTTCCA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.26, C:0.35, G:0.21, T:0.18
Consensus pattern (18 bp):
CCAGAGTATCCAGCCTGT
Left flanking sequence: Indices 274493 -- 274992
GCTTGGCGGCGCGCGGGATGATTTTGACGGCGCAGATCTCGTGCAGTTGTTTGTGGAATGCTAGT
TTGACCTTGCCCATCAGCCCGGCGCCGATGGTGCGGATGAAGTCCCAGTCGCCGATCGACTTGCG
GTGGAACTGTTGCTGGCGCTTGGAGGGCTGGGAGGGGTCGGTCTGGCCAGGGGTGGTCTTGCCGG
GGGTGGTGGACTGGGTGGGTTGGCCGGGCTGGCCGGTAGACTGGGCTGGGGTAGCCTGGCCAGGC
GCAGGTTGCGATCCCTGGTGAGGCTGGGCATGAGAGTGGCCGTGGTGACCAGATTGGCCAGAATG
ACCAGATTGGCCGTGGTAACCAGATTGGCCGTGGCCTTGGCCAGATTGGCTGTGGCCGTGGCTAG
ACTGGCCGTGGGCAGCATGACCATGGGATTGGCTTGGCTGGCCAGAGTGGCTGGAATGGTTTTGA
CCAGAATGGCCAGATTGACCAGATTGACCAGAATAGCCGGACTGA
Right flanking sequence: Indices 275050 -- 275549
CCCCGTTCCACCTCTTCTTCAGCAATGCTCCGGGGGTTCTTTCCCCCCAGATACTGCAGCGACAG
CTGCGACGGGCGGCGGGCCGGGCCCCACGGCGGCGCCTGGCCCGCGGGCGGCAACAACTCGCGCT
TCAACGAGCCATTGGACCCGTCGCCAGACCCGCCCAGCACCCGGCTCTGGTCCTCGCGGCTGCGT
AGGGTGCCGCTGACCAGCCGGAGCATGCGGGCGGTGGCGGGTTGGTTCTTTTGCTGGGCCTGGGC
CGAGTGGGCGTGGGACGGCGCCTGGCCCGAGGCGCCGCCGCCATACGACGGTTCTACCGCGGGGG
CGTCCATCGAGGATGGGGATTAGCTGGGCAACGGCTGGGGAGCAAACTCAGCGATAACGGCCACG
TAGATGCAGTGGCAAACAGAAAACCCGGGGACAGAGGGAGCGGGTCACACACAGTAGGAGCCTAG
GTACGCTTGAAACAACAACAGCTCCAGCGGCAATTAACAGCTCTA
Found at i:275981 original size:12 final size:12
Alignment explanation
Indices: 275964--276139 Score: 111
Period size: 12 Copynumber: 15.2 Consensus size: 12
275954 GGTCATGGTG
275964 GGAGAAGTGGGT
1 GGAGAAGTGGGT
*
275976 GGAGAA-TGGGC
1 GGAGAAGTGGGT
*
275987 GGAAAAGTGGGT
1 GGAGAAGTGGGT
*
275999 GGAAAAGTGGGT
1 GGAGAAGTGGGT
*
276011 GGAGAATTGGGT
1 GGAGAAGTGGGT
* *
276023 GGAAAAGTGGAT
1 GGAGAAGTGGGT
* *
276035 AGAAAAGTGGGT
1 GGAGAAGTGGGT
*
276047 GGAAAAAGTGGGT
1 GG-AGAAGTGGGT
* * *
276060 GGATAGGTCGGT
1 GGAGAAGTGGGT
*
276072 -GA-AAAT-GGT
1 GGAGAAGTGGGT
*
276081 AGG-GATGTGGGT
1 -GGAGAAGTGGGT
*
276093 GGA-TA-TGGGT
1 GGAGAAGTGGGT
*
276103 -GAGAAATGGGT
1 GGAGAAGTGGGT
276114 -GAGAAGTGGGT
1 GGAGAAGTGGGT
276125 -GAGAAAGTGGGT
1 GGAG-AAGTGGGT
276137 GGA
1 GGA
276140 AGATGGGTGG
Statistics
Matches: 131, Mismatches: 22, Indels: 21
0.75 0.13 0.12
Matches are distributed among these distances:
9 5 0.04
10 8 0.06
11 34 0.26
12 70 0.53
13 14 0.11
ACGTcount: A:0.31, C:0.01, G:0.49, T:0.19
Consensus pattern (12 bp):
GGAGAAGTGGGT
Left flanking sequence: Indices 275464 -- 275963
CCGGGGACAGAGGGAGCGGGTCACACACAGTAGGAGCCTAGGTACGCTTGAAACAACAACAGCTC
CAGCGGCAATTAACAGCTCTACTTGTCGGGTAGCGGGGGTTCGAGGTGTGTTTTTCGTGTAGGAT
GCGAAGTGGCTGGCGAAAAATACGTGTCTAGGCTAAACTGCTGGGAGTCGCTCGGACGGTGGTCA
GGGGTATCGTCCGACAATTGCCCGGCCCGCGGAACGACGACGGGTCCGGTTTCGTGGCAGCGGCT
CACCGGCTCGGCGGCCCGGTGTAGACGGGTGTAGGTGGCGGGCGGTGGCGCGTGCGGGGCGCGTG
TTGCCCAGCCAACGTGGCTACAGCTTGGCTACAGTGTCGGCAGTAAAACCAGGGGTAAGTGAGAG
GTGATGGCGGTGGTCGGTTCCGGGTTCCCCGAGACGTTGCTCCGACGTGGGGCCGAGCAATGTGG
TACTAAGAGGTGAAGGTGGGATAGGGGTTTAGGGTGGTCATGGTG
Right flanking sequence: Indices 276140 -- 276639
AGATGGGTGGAAAGGTAGGTGGGAATGTCGGTGGAATTGTGGGTGGGAAAATGGGTGTAAAGATA
TGTAGGAGAAGTAATAGCTTAGCGCCTAGACAATGGTAGATTGATAGGTACTGAGTATTGGCTCA
AGTGACAGATATAAATCCCAAAAGGTGTGGCAACTCGATTGATACATACGTGGTACTCCAGCAAT
TGCATACATACAATACGAGTCACCGTAACCCGTGAGTCATCGTCGGCTGTGGAGCATGATAACAC
TGTGCATAACCCCGACACGCTCGTGCGGGCCGCCTCCGAACGTGTCCACACGAGCACTGGGCCTC
CTACCGAGGCACGGAATGTTCCCCATGCGGTATCAGCACGCGATAATCGCCAAGCACGTTTGTGG
TGCTCATTCTTGTGCACTCAGGGACCGCGGGAAGCGAGCCGCGGATCCAGCATTGCCCTCCCGCC
TACAATCGTTGGCAATAGCCGGTGACACAATCGCAGCCAAGACCG
Found at i:276000 original size:36 final size:36
Alignment explanation
Indices: 275968--276049 Score: 130
Period size: 36 Copynumber: 2.3 Consensus size: 36
275958 ATGGTGGGAG
275968 AAGTGGGTGGAGAA-TGGGCGGAAAAGTGGGTGGAA
1 AAGTGGGTGGAGAATTGGGCGGAAAAGTGGGTGGAA
* * *
276003 AAGTGGGTGGAGAATTGGGTGGAAAAGTGGATAGAA
1 AAGTGGGTGGAGAATTGGGCGGAAAAGTGGGTGGAA
276039 AAGTGGGTGGA
1 AAGTGGGTGGA
276050 AAAAGTGGGT
Statistics
Matches: 43, Mismatches: 3, Indels: 1
0.91 0.06 0.02
Matches are distributed among these distances:
35 14 0.33
36 29 0.67
ACGTcount: A:0.33, C:0.01, G:0.49, T:0.17
Consensus pattern (36 bp):
AAGTGGGTGGAGAATTGGGCGGAAAAGTGGGTGGAA
Left flanking sequence: Indices 275468 -- 275967
GGACAGAGGGAGCGGGTCACACACAGTAGGAGCCTAGGTACGCTTGAAACAACAACAGCTCCAGC
GGCAATTAACAGCTCTACTTGTCGGGTAGCGGGGGTTCGAGGTGTGTTTTTCGTGTAGGATGCGA
AGTGGCTGGCGAAAAATACGTGTCTAGGCTAAACTGCTGGGAGTCGCTCGGACGGTGGTCAGGGG
TATCGTCCGACAATTGCCCGGCCCGCGGAACGACGACGGGTCCGGTTTCGTGGCAGCGGCTCACC
GGCTCGGCGGCCCGGTGTAGACGGGTGTAGGTGGCGGGCGGTGGCGCGTGCGGGGCGCGTGTTGC
CCAGCCAACGTGGCTACAGCTTGGCTACAGTGTCGGCAGTAAAACCAGGGGTAAGTGAGAGGTGA
TGGCGGTGGTCGGTTCCGGGTTCCCCGAGACGTTGCTCCGACGTGGGGCCGAGCAATGTGGTACT
AAGAGGTGAAGGTGGGATAGGGGTTTAGGGTGGTCATGGTGGGAG
Right flanking sequence: Indices 276050 -- 276549
AAAAGTGGGTGGATAGGTCGGTGAAAATGGTAGGGATGTGGGTGGATATGGGTGAGAAATGGGTG
AGAAGTGGGTGAGAAAGTGGGTGGAAGATGGGTGGAAAGGTAGGTGGGAATGTCGGTGGAATTGT
GGGTGGGAAAATGGGTGTAAAGATATGTAGGAGAAGTAATAGCTTAGCGCCTAGACAATGGTAGA
TTGATAGGTACTGAGTATTGGCTCAAGTGACAGATATAAATCCCAAAAGGTGTGGCAACTCGATT
GATACATACGTGGTACTCCAGCAATTGCATACATACAATACGAGTCACCGTAACCCGTGAGTCAT
CGTCGGCTGTGGAGCATGATAACACTGTGCATAACCCCGACACGCTCGTGCGGGCCGCCTCCGAA
CGTGTCCACACGAGCACTGGGCCTCCTACCGAGGCACGGAATGTTCCCCATGCGGTATCAGCACG
CGATAATCGCCAAGCACGTTTGTGGTGCTCATTCTTGTGCACTCA
Found at i:276021 original size:24 final size:24
Alignment explanation
Indices: 275968--276196 Score: 133
Period size: 24 Copynumber: 9.9 Consensus size: 24
275958 ATGGTGGGAG
* *
275968 AAGTGGGTGGAGAA-TGGGCGGAA
1 AAGTGGGTGGAAAAGTGGGTGGAA
*
275991 AAGTGGGTGGAAAAGTGGGTGGAG
1 AAGTGGGTGGAAAAGTGGGTGGAA
* * *
276015 AATTGGGTGGAAAAGTGGATAGAA
1 AAGTGGGTGGAAAAGTGGGTGGAA
*
276039 AAGTGGGTGGAAAAAGTGGGTGGAT
1 AAGTGGGTGG-AAAAGTGGGTGGAA
* * *
276064 AGGTCGGT-GAAAA-T-GGTAGG-G
1 AAGTGGGTGGAAAAGTGGGT-GGAA
* *
276085 ATGTGGGTGG-ATA-TGGGT-GAGA
1 AAGTGGGTGGAAAAGTGGGTGGA-A
*
276107 AA-TGGGT-GAGAAGTGGGT-GAGA
1 AAGTGGGTGGAAAAGTGGGTGGA-A
*
276129 AAGTGGGTGGAAGA-TGGGTGGAA
1 AAGTGGGTGGAAAAGTGGGTGGAA
* * * * *
276152 AGGTAGGTGGGAATGTCGGTGGAA
1 AAGTGGGTGGAAAAGTGGGTGGAA
**
276176 TTGTGGGTGGGAAAA-TGGGTG
1 AAGTGGGT-GGAAAAGTGGGTG
276197 TAAAGATATG
Statistics
Matches: 157, Mismatches: 35, Indels: 27
0.72 0.16 0.12
Matches are distributed among these distances:
20 2 0.01
21 18 0.11
22 19 0.12
23 37 0.24
24 60 0.38
25 21 0.13
ACGTcount: A:0.29, C:0.01, G:0.49, T:0.20
Consensus pattern (24 bp):
AAGTGGGTGGAAAAGTGGGTGGAA
Left flanking sequence: Indices 275468 -- 275967
GGACAGAGGGAGCGGGTCACACACAGTAGGAGCCTAGGTACGCTTGAAACAACAACAGCTCCAGC
GGCAATTAACAGCTCTACTTGTCGGGTAGCGGGGGTTCGAGGTGTGTTTTTCGTGTAGGATGCGA
AGTGGCTGGCGAAAAATACGTGTCTAGGCTAAACTGCTGGGAGTCGCTCGGACGGTGGTCAGGGG
TATCGTCCGACAATTGCCCGGCCCGCGGAACGACGACGGGTCCGGTTTCGTGGCAGCGGCTCACC
GGCTCGGCGGCCCGGTGTAGACGGGTGTAGGTGGCGGGCGGTGGCGCGTGCGGGGCGCGTGTTGC
CCAGCCAACGTGGCTACAGCTTGGCTACAGTGTCGGCAGTAAAACCAGGGGTAAGTGAGAGGTGA
TGGCGGTGGTCGGTTCCGGGTTCCCCGAGACGTTGCTCCGACGTGGGGCCGAGCAATGTGGTACT
AAGAGGTGAAGGTGGGATAGGGGTTTAGGGTGGTCATGGTGGGAG
Right flanking sequence: Indices 276197 -- 276696
TAAAGATATGTAGGAGAAGTAATAGCTTAGCGCCTAGACAATGGTAGATTGATAGGTACTGAGTA
TTGGCTCAAGTGACAGATATAAATCCCAAAAGGTGTGGCAACTCGATTGATACATACGTGGTACT
CCAGCAATTGCATACATACAATACGAGTCACCGTAACCCGTGAGTCATCGTCGGCTGTGGAGCAT
GATAACACTGTGCATAACCCCGACACGCTCGTGCGGGCCGCCTCCGAACGTGTCCACACGAGCAC
TGGGCCTCCTACCGAGGCACGGAATGTTCCCCATGCGGTATCAGCACGCGATAATCGCCAAGCAC
GTTTGTGGTGCTCATTCTTGTGCACTCAGGGACCGCGGGAAGCGAGCCGCGGATCCAGCATTGCC
CTCCCGCCTACAATCGTTGGCAATAGCCGGTGACACAATCGCAGCCAAGACCGCAACCCGGATGT
CACATAACCGCGCAGATGATCGCCCCCTGCGGTGGCGGTGGCAAT
Found at i:276113 original size:11 final size:10
Alignment explanation
Indices: 276088--276152 Score: 67
Period size: 11 Copynumber: 6.0 Consensus size: 10
276078 GGTAGGGATG
*
276088 TGGGTGGATA
1 TGGGTGGAAA
276098 TGGGTGAGAAA
1 TGGGTG-GAAA
*
276109 TGGGTGAGAAG
1 TGGGTG-GAAA
276120 TGGGTGAGAAA
1 TGGGTG-GAAA
276131 GTGGGTGGAAGA
1 -TGGGTGGAA-A
276143 TGGGTGGAAA
1 TGGGTGGAAA
276153 GGTAGGTGGG
Statistics
Matches: 49, Mismatches: 3, Indels: 6
0.84 0.05 0.10
Matches are distributed among these distances:
10 7 0.14
11 35 0.71
12 7 0.14
ACGTcount: A:0.29, C:0.00, G:0.51, T:0.20
Consensus pattern (10 bp):
TGGGTGGAAA
Left flanking sequence: Indices 275588 -- 276087
TAGGATGCGAAGTGGCTGGCGAAAAATACGTGTCTAGGCTAAACTGCTGGGAGTCGCTCGGACGG
TGGTCAGGGGTATCGTCCGACAATTGCCCGGCCCGCGGAACGACGACGGGTCCGGTTTCGTGGCA
GCGGCTCACCGGCTCGGCGGCCCGGTGTAGACGGGTGTAGGTGGCGGGCGGTGGCGCGTGCGGGG
CGCGTGTTGCCCAGCCAACGTGGCTACAGCTTGGCTACAGTGTCGGCAGTAAAACCAGGGGTAAG
TGAGAGGTGATGGCGGTGGTCGGTTCCGGGTTCCCCGAGACGTTGCTCCGACGTGGGGCCGAGCA
ATGTGGTACTAAGAGGTGAAGGTGGGATAGGGGTTTAGGGTGGTCATGGTGGGAGAAGTGGGTGG
AGAATGGGCGGAAAAGTGGGTGGAAAAGTGGGTGGAGAATTGGGTGGAAAAGTGGATAGAAAAGT
GGGTGGAAAAAGTGGGTGGATAGGTCGGTGAAAATGGTAGGGATG
Right flanking sequence: Indices 276153 -- 276652
GGTAGGTGGGAATGTCGGTGGAATTGTGGGTGGGAAAATGGGTGTAAAGATATGTAGGAGAAGTA
ATAGCTTAGCGCCTAGACAATGGTAGATTGATAGGTACTGAGTATTGGCTCAAGTGACAGATATA
AATCCCAAAAGGTGTGGCAACTCGATTGATACATACGTGGTACTCCAGCAATTGCATACATACAA
TACGAGTCACCGTAACCCGTGAGTCATCGTCGGCTGTGGAGCATGATAACACTGTGCATAACCCC
GACACGCTCGTGCGGGCCGCCTCCGAACGTGTCCACACGAGCACTGGGCCTCCTACCGAGGCACG
GAATGTTCCCCATGCGGTATCAGCACGCGATAATCGCCAAGCACGTTTGTGGTGCTCATTCTTGT
GCACTCAGGGACCGCGGGAAGCGAGCCGCGGATCCAGCATTGCCCTCCCGCCTACAATCGTTGGC
AATAGCCGGTGACACAATCGCAGCCAAGACCGCAACCCGGATGTC
Found at i:276125 original size:22 final size:23
Alignment explanation
Indices: 276087--276153 Score: 88
Period size: 22 Copynumber: 3.0 Consensus size: 23
276077 TGGTAGGGAT
*
276087 GTGGGTGG-ATATGGGTGAGAAA
1 GTGGGTGGAAGATGGGTGAGAAA
276109 -TGGGTGAGAAG-TGGGTGAGAAA
1 GTGGGTG-GAAGATGGGTGAGAAA
276131 GTGGGTGGAAGATGGGTG-GAAA
1 GTGGGTGGAAGATGGGTGAGAAA
276153 G
1 G
276154 GTAGGTGGGA
Statistics
Matches: 40, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
21 6 0.15
22 21 0.52
23 13 0.32
ACGTcount: A:0.28, C:0.00, G:0.52, T:0.19
Consensus pattern (23 bp):
GTGGGTGGAAGATGGGTGAGAAA
Left flanking sequence: Indices 275587 -- 276086
GTAGGATGCGAAGTGGCTGGCGAAAAATACGTGTCTAGGCTAAACTGCTGGGAGTCGCTCGGACG
GTGGTCAGGGGTATCGTCCGACAATTGCCCGGCCCGCGGAACGACGACGGGTCCGGTTTCGTGGC
AGCGGCTCACCGGCTCGGCGGCCCGGTGTAGACGGGTGTAGGTGGCGGGCGGTGGCGCGTGCGGG
GCGCGTGTTGCCCAGCCAACGTGGCTACAGCTTGGCTACAGTGTCGGCAGTAAAACCAGGGGTAA
GTGAGAGGTGATGGCGGTGGTCGGTTCCGGGTTCCCCGAGACGTTGCTCCGACGTGGGGCCGAGC
AATGTGGTACTAAGAGGTGAAGGTGGGATAGGGGTTTAGGGTGGTCATGGTGGGAGAAGTGGGTG
GAGAATGGGCGGAAAAGTGGGTGGAAAAGTGGGTGGAGAATTGGGTGGAAAAGTGGATAGAAAAG
TGGGTGGAAAAAGTGGGTGGATAGGTCGGTGAAAATGGTAGGGAT
Right flanking sequence: Indices 276154 -- 276653
GTAGGTGGGAATGTCGGTGGAATTGTGGGTGGGAAAATGGGTGTAAAGATATGTAGGAGAAGTAA
TAGCTTAGCGCCTAGACAATGGTAGATTGATAGGTACTGAGTATTGGCTCAAGTGACAGATATAA
ATCCCAAAAGGTGTGGCAACTCGATTGATACATACGTGGTACTCCAGCAATTGCATACATACAAT
ACGAGTCACCGTAACCCGTGAGTCATCGTCGGCTGTGGAGCATGATAACACTGTGCATAACCCCG
ACACGCTCGTGCGGGCCGCCTCCGAACGTGTCCACACGAGCACTGGGCCTCCTACCGAGGCACGG
AATGTTCCCCATGCGGTATCAGCACGCGATAATCGCCAAGCACGTTTGTGGTGCTCATTCTTGTG
CACTCAGGGACCGCGGGAAGCGAGCCGCGGATCCAGCATTGCCCTCCCGCCTACAATCGTTGGCA
ATAGCCGGTGACACAATCGCAGCCAAGACCGCAACCCGGATGTCA
Found at i:276160 original size:23 final size:22
Alignment explanation
Indices: 276090--276161 Score: 69
Period size: 22 Copynumber: 3.2 Consensus size: 22
276080 TAGGGATGTG
*
276090 GGTGGATA-TGGGTGAGAAA-TG
1 GGTGGA-AGTGGGTGAGAAAGTA
*
276111 GGTGAGAAGTGGGTGAGAAAGTG
1 GGTG-GAAGTGGGTGAGAAAGTA
276134 GGTGGAAGATGGGTG-GAAAGGTA
1 GGTGGAAG-TGGGTGAGAAA-GTA
276157 GGTGG
1 GGTGG
276162 GAATGTCGGT
Statistics
Matches: 45, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
21 5 0.11
22 21 0.47
23 19 0.42
ACGTcount: A:0.28, C:0.00, G:0.53, T:0.19
Consensus pattern (22 bp):
GGTGGAAGTGGGTGAGAAAGTA
Left flanking sequence: Indices 275590 -- 276089
GGATGCGAAGTGGCTGGCGAAAAATACGTGTCTAGGCTAAACTGCTGGGAGTCGCTCGGACGGTG
GTCAGGGGTATCGTCCGACAATTGCCCGGCCCGCGGAACGACGACGGGTCCGGTTTCGTGGCAGC
GGCTCACCGGCTCGGCGGCCCGGTGTAGACGGGTGTAGGTGGCGGGCGGTGGCGCGTGCGGGGCG
CGTGTTGCCCAGCCAACGTGGCTACAGCTTGGCTACAGTGTCGGCAGTAAAACCAGGGGTAAGTG
AGAGGTGATGGCGGTGGTCGGTTCCGGGTTCCCCGAGACGTTGCTCCGACGTGGGGCCGAGCAAT
GTGGTACTAAGAGGTGAAGGTGGGATAGGGGTTTAGGGTGGTCATGGTGGGAGAAGTGGGTGGAG
AATGGGCGGAAAAGTGGGTGGAAAAGTGGGTGGAGAATTGGGTGGAAAAGTGGATAGAAAAGTGG
GTGGAAAAAGTGGGTGGATAGGTCGGTGAAAATGGTAGGGATGTG
Right flanking sequence: Indices 276162 -- 276661
GAATGTCGGTGGAATTGTGGGTGGGAAAATGGGTGTAAAGATATGTAGGAGAAGTAATAGCTTAG
CGCCTAGACAATGGTAGATTGATAGGTACTGAGTATTGGCTCAAGTGACAGATATAAATCCCAAA
AGGTGTGGCAACTCGATTGATACATACGTGGTACTCCAGCAATTGCATACATACAATACGAGTCA
CCGTAACCCGTGAGTCATCGTCGGCTGTGGAGCATGATAACACTGTGCATAACCCCGACACGCTC
GTGCGGGCCGCCTCCGAACGTGTCCACACGAGCACTGGGCCTCCTACCGAGGCACGGAATGTTCC
CCATGCGGTATCAGCACGCGATAATCGCCAAGCACGTTTGTGGTGCTCATTCTTGTGCACTCAGG
GACCGCGGGAAGCGAGCCGCGGATCCAGCATTGCCCTCCCGCCTACAATCGTTGGCAATAGCCGG
TGACACAATCGCAGCCAAGACCGCAACCCGGATGTCACATAACCG
Found at i:277306 original size:18 final size:18
Alignment explanation
Indices: 277283--277321 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
277273 GGACGGTCGA
277283 TCAATCTGATTC-AACCGT
1 TCAATC-GATTCAAACCGT
*
277301 TCAATCGGTTCAAACCGT
1 TCAATCGATTCAAACCGT
277319 TCA
1 TCA
277322 TTCCGTCGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.28, C:0.28, G:0.13, T:0.31
Consensus pattern (18 bp):
TCAATCGATTCAAACCGT
Left flanking sequence: Indices 276783 -- 277282
CCCAGGGGTCGGGTCTTCAAAATGTGTATAAATATATGTATATATTATTCCAGGCGTCACAAGGG
GATGCTAGCGCGCGACGGCGAGATGGGACCCTTGCTCTGCGGAAGCAGCATGCTTAGTGGTGGTG
CTTCAAGTGCGAGTTGTACTCCCAGGTGTAGCCCAACACAACAATGGCCACGGCCAAGTGGAGCA
AAGGCTTGCCAGAAGCGTTGTCACCGTCAAAGTAGGCAGCCTTGTACTTGCCCCAGGGAGTAGTG
GGCTTCTTGGGGGCAGGGGCGGCACCCTGGGGGAGCTTCTTGTAGAAAGAAACAACCTCCTGCAT
TCTCTTGGCGTTGGGGTTGGAGCCCAAGTTCTGGATTGTTAGTATGTGCGTGGGGAAGACCTGGC
AATGGCAGGGAGCAGGGATGGGTGGGAGGGGATAGATGGACTTAGAATGCTTAGGAAACACAAGG
AATATTGGACGTAAACGTGACGTGAACGTGCTTGTGGACGGTCGA
Right flanking sequence: Indices 277322 -- 277821
TTCCGTCGTACCGCTCAATGGGATGGTCTTGACAGGGAAGCTCATTGGCCAGGGTCTCTCAAATG
GGCGTGGCTACTCACCTTAGCCGAAGCGATCTTAGGGGGGATAAGAGTGGAAAGACTTCTTCTGA
TCATAAACGACGACATGATTGAATATGGGTCTGTTGTCTCGCAAACCTTGAAAATTTCCCGCGAA
AATTCGGGCCCTCACTGGTTGGCCTGCACGCAGGATGAGAATTCTGTCAGATGATTGGCTGCCGC
GCACCCGCGTTTCGCACTAGCACCCCACAACGGGAATGCACGGTAGTGATCTATTAGTGTTATGT
AGTAGTGTTGATAATGATAAGGGTACCAGCGGTGTAGTGTCTAGAGATGGCTGATGTGGTTGAAT
GGTTTACGAGTGAATGGTTTACGAGTGAATGGTTTGAACGAGTGACCGGTACCGATTGGTGACTG
TATCGACTCGTACTGGTATCGACTCTAAACTGGTATCGACTCGTA
Done.