Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold18
Parameters: 2 7 7 80 10 50 500
Length:  128642

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
271--380
31
3.7
31
73
18
115
16
30
37
15
1.90
296--385
27
3.2
27
69
17
83
17
27
41
13
1.87
268--390
58
2.1
58
90
1
194
15
28
41
14
1.86
4199--4251
12
4.0
14
75
18
51
30
13
47
9
1.74
6031--6093
12
5.2
12
90
0
99
25
17
31
25
1.97
6032--6100
36
1.9
36
87
0
102
27
15
31
24
1.96
36041--36118
33
2.5
31
81
6
95
24
35
35
3
1.74
36133--36162
12
2.5
12
100
0
60
20
43
16
20
1.88
39026--39064
15
2.7
15
88
11
55
7
7
56
28
1.55
51264--51297
15
2.3
15
100
0
68
20
17
52
8
1.71
51325--51355
11
2.7
12
95
5
55
25
0
58
16
1.38
51883--51976
39
2.3
39
83
5
116
30
47
7
13
1.71
51946--51982
13
2.6
14
91
8
58
24
54
8
13
1.66
52009--52067
14
4.2
14
80
6
66
33
59
0
6
1.24
52020--52068
17
3.1
17
80
8
50
32
63
0
4
1.13
53709--53763
18
3.1
18
97
0
101
9
40
18
32
1.82
53709--53782
36
2.1
36
84
5
96
8
39
21
31
1.83
54424--54465
12
3.5
12
90
6
59
7
38
40
14
1.73
66872--66898
9
3.0
9
100
0
54
22
55
11
11
1.66
89163--89190
12
2.3
12
100
0
56
28
46
25
0
1.53
110823--110974
12
12.7
12
92
0
232
0
23
42
33
1.54
110826--110974
18
8.3
18
90
0
217
0
24
42
33
1.55

Tables:   1

The End!