Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold67
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 681576
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.23
File 1 of 4
Found at i:2516 original size:19 final size:19
Alignment explanation
Indices: 2492--2544 Score: 106
Period size: 19 Copynumber: 2.8 Consensus size: 19
2482 GGAAGTTCTA
2492 CTTTCGCGTAGGCTCTTTT
1 CTTTCGCGTAGGCTCTTTT
2511 CTTTCGCGTAGGCTCTTTT
1 CTTTCGCGTAGGCTCTTTT
2530 CTTTCGCGTAGGCTC
1 CTTTCGCGTAGGCTC
2545 CTTCTATTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.06, C:0.28, G:0.23, T:0.43
Consensus pattern (19 bp):
CTTTCGCGTAGGCTCTTTT
Left flanking sequence: Indices 1992 -- 2491
CCTGATGACGTTCCTGGAGGCGAGGAGATCGACGGGAAGCGGTACAAGTTCATGAACAACCACTG
GTTGATCACGGCGTTGGCGGCGCTTATCTGGCTCTTCATCCTGGTGTTGAACGTGTACGCCATCG
TCGACATGGCCCGGAACGGGGTTGCGGGCTAGGACATTATGCATTGAGGACCACCTCACGAGAGG
TTGGACAGTCTAACTACATACGAATATATTACAAGTGAGAGTGATAACGAGGGATAGGGATAACC
GATTGACAAGCATCGATATTACATGGGAGCCAATCTCCACGGGTATGTATTTTCTGGGTATTCTG
TCAGACTTACGCGTAGTGGTGTACGGATATCAGCCAGATCGATTGATTCGACATGACACAAAATC
AAATCGATCGGGGTCAACCTTACCTTGATCTAGATCTCACCCACACGGGCACGTCATCCAGAGTG
TGTCTCTACAAAACGGACATAACAATGTCACTTTCGGAAGTTCTA
Right flanking sequence: Indices 2545 -- 3044
CTTCTATTTTTAGACTGCTGGCTACACCGTTTCCCTGCCAAGTCGTGCCAAGAGCCGTACTCGTA
AACTCGTCCCAGAAAGAGTCTAGGCCTACCCTTGCTTATTGTCGTACGTCTAACGTTTTCACATG
GGCTTGGCACAGACAGTGCCAATTACCCAATACAATTTCCAATATGCAACCAACCACTCCAAACC
ACTCCCCTCTGAAAGATCTACTCTCTATTCAATAAATACTTCTAGTTCTCAAGGAAATCCTTGAT
GTTGGCGCCATCGGCCTCCACGATCGCCTGGATCTTGCGGTGGATGTCCGAGTAGTCGTTGAACT
CGGTGTAGGGAATCCCCTCGCGCTTGGAGTAGATGATCAAGTCCTTGCCGTGCTTGGCAAGCAAC
AAGTTGGTCTCCTTGGCCGCCAGGATGTCGGAAACACCGTCGCCAGCGTAGAACAACAACGTGCT
CTTGTCCACCTGGTTGCGCGCCAAGTACTCCCGGATCAGCTTCGA
Found at i:3983 original size:11 final size:11
Alignment explanation
Indices: 3967--4036 Score: 61
Period size: 11 Copynumber: 6.5 Consensus size: 11
3957 TCTCCTCCAC
*
3967 TCTTCTTTCAT
1 TCTTCTTTCTT
* *
3978 TCTTCTTTGTA
1 TCTTCTTTCTT
*
3989 CCTTCTTTCTT
1 TCTTCTTTCTT
*
4000 TCTTCCTTCTT
1 TCTTCTTTCTT
*
4011 TCTTC-TTCCT
1 TCTTCTTTCTT
* *
4021 TCTTCCTTCTC
1 TCTTCTTTCTT
4032 TCTTC
1 TCTTC
4037 GTCTCTTCTT
Statistics
Matches: 47, Mismatches: 11, Indels: 2
0.78 0.18 0.03
Matches are distributed among these distances:
10 9 0.19
11 38 0.81
ACGTcount: A:0.03, C:0.34, G:0.01, T:0.61
Consensus pattern (11 bp):
TCTTCTTTCTT
Left flanking sequence: Indices 3467 -- 3966
AGTCGGAAAACACGATGGCCTTGGGCTGTGTAGACGTAGTCATAGTGGTGCTGAACGTTGGGAAA
AGTTGGGTAAACCGGTTTGGAAACTGAAAAGTTGGCCATGCCTGCTGACGTCATCGGGCTCACCG
GGCCCGCCAGGTTTGGCGGACTACCCGGTCAGGTGAGAGTCAGGTGCCCACGGGTGCGGCGACAG
AGGCGGCTACGTTGAGCCACCGCCAGGGCCACTACCGTGGGGCGCCCGGGGTCGGCTCGGCCACA
TGCAGGCGGCCGGCAGTTTCCGCTTGCTTGCGGTGACGTGGCCGCCAGTTTTGTGGGAGCGTGCG
GTTGCTTATGTATAGGGGGTGAAAAATACCCGCCTTGGGACAAACGTGTTGATGCGGTGTCACAA
GTCAAAGCGTGGTTTAGTGTTTTGACTTTGGTAGTTTGTGTCCATTTCTTCAATCATTTGTGCTA
TTTCTATTGCTTACCTTTTCCTTCGCTTTCAACTTTCTCCTCCAC
Right flanking sequence: Indices 4037 -- 4536
GTCTCTTCTTCATTGTCTGTCTTTCTCAAGTCCACTGTCCCACCTACCGCCTCAGGCGTTTCAGC
CACACCGTCAGGGCTCGAACACGCTTAGCCACTGGATCTCGAATCACAGGTAATCGCACGTTAGA
TTGCTTTGATCTCGCCAACAAAGTACGACCCCTCTCGCCTACCCCAGCAATCCACCCCGGACCTC
GTAGCTGCTGGGTGCTGCCTCCACCCCACTGACAGCAGCGTGCCGTCGTAAACCACCGCCCGCCC
CTGGACCCGCAGCACGTGTATGACATCATCGTGAATAGATCATCGAAACCTTAGTACGATCCCAG
GCAGCCAGGTACAATGCCGGCATAAACCTTGCTGCCCCAGCAAGCCAGCCCGCCCTACACGTTCA
GTAGCCCGTAAAAATCCACCCCTACACCCGTTCCTACGCCCATCGGCTCGGCCGGCCCTTTTTGC
CGCCCGGCCGCGACCGCGTTCGTTGGCATATTGTTGAGGCAACCG
Found at i:4000 original size:15 final size:15
Alignment explanation
Indices: 3980--4024 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
3970 TCTTTCATTC
*
3980 TTCTTTGTACCTTCT
1 TTCTTTCTACCTTCT
*
3995 TTCTTTCTTCCTTCT
1 TTCTTTCTACCTTCT
*
4010 TTC-TTCTTCCTTCT
1 TTCTTTCTACCTTCT
4024 T
1 T
4025 CCTTCTCTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
14 12 0.43
15 16 0.57
ACGTcount: A:0.02, C:0.31, G:0.02, T:0.64
Consensus pattern (15 bp):
TTCTTTCTACCTTCT
Left flanking sequence: Indices 3480 -- 3979
GATGGCCTTGGGCTGTGTAGACGTAGTCATAGTGGTGCTGAACGTTGGGAAAAGTTGGGTAAACC
GGTTTGGAAACTGAAAAGTTGGCCATGCCTGCTGACGTCATCGGGCTCACCGGGCCCGCCAGGTT
TGGCGGACTACCCGGTCAGGTGAGAGTCAGGTGCCCACGGGTGCGGCGACAGAGGCGGCTACGTT
GAGCCACCGCCAGGGCCACTACCGTGGGGCGCCCGGGGTCGGCTCGGCCACATGCAGGCGGCCGG
CAGTTTCCGCTTGCTTGCGGTGACGTGGCCGCCAGTTTTGTGGGAGCGTGCGGTTGCTTATGTAT
AGGGGGTGAAAAATACCCGCCTTGGGACAAACGTGTTGATGCGGTGTCACAAGTCAAAGCGTGGT
TTAGTGTTTTGACTTTGGTAGTTTGTGTCCATTTCTTCAATCATTTGTGCTATTTCTATTGCTTA
CCTTTTCCTTCGCTTTCAACTTTCTCCTCCACTCTTCTTTCATTC
Right flanking sequence: Indices 4025 -- 4524
CCTTCTCTCTTCGTCTCTTCTTCATTGTCTGTCTTTCTCAAGTCCACTGTCCCACCTACCGCCTC
AGGCGTTTCAGCCACACCGTCAGGGCTCGAACACGCTTAGCCACTGGATCTCGAATCACAGGTAA
TCGCACGTTAGATTGCTTTGATCTCGCCAACAAAGTACGACCCCTCTCGCCTACCCCAGCAATCC
ACCCCGGACCTCGTAGCTGCTGGGTGCTGCCTCCACCCCACTGACAGCAGCGTGCCGTCGTAAAC
CACCGCCCGCCCCTGGACCCGCAGCACGTGTATGACATCATCGTGAATAGATCATCGAAACCTTA
GTACGATCCCAGGCAGCCAGGTACAATGCCGGCATAAACCTTGCTGCCCCAGCAAGCCAGCCCGC
CCTACACGTTCAGTAGCCCGTAAAAATCCACCCCTACACCCGTTCCTACGCCCATCGGCTCGGCC
GGCCCTTTTTGCCGCCCGGCCGCGACCGCGTTCGTTGGCATATTG
Found at i:4015 original size:7 final size:7
Alignment explanation
Indices: 3990--4046 Score: 51
Period size: 7 Copynumber: 7.9 Consensus size: 7
3980 TTCTTTGTAC
3990 CTTCTTT
1 CTTCTTT
*
3997 CTTTCTTC
1 C-TTCTTT
4005 CTTCTTT
1 CTTCTTT
*
4012 CTTCTTC
1 CTTCTTT
*
4019 CTTCTTC
1 CTTCTTT
*
4026 CTTCTCT
1 CTTCTTT
*
4033 CTTCGTCT
1 CTTC-TTT
4041 CTTCTT
1 CTTCTT
4047 CATTGTCTGT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
7 29 0.69
8 13 0.31
ACGTcount: A:0.00, C:0.37, G:0.02, T:0.61
Consensus pattern (7 bp):
CTTCTTT
Left flanking sequence: Indices 3490 -- 3989
GGCTGTGTAGACGTAGTCATAGTGGTGCTGAACGTTGGGAAAAGTTGGGTAAACCGGTTTGGAAA
CTGAAAAGTTGGCCATGCCTGCTGACGTCATCGGGCTCACCGGGCCCGCCAGGTTTGGCGGACTA
CCCGGTCAGGTGAGAGTCAGGTGCCCACGGGTGCGGCGACAGAGGCGGCTACGTTGAGCCACCGC
CAGGGCCACTACCGTGGGGCGCCCGGGGTCGGCTCGGCCACATGCAGGCGGCCGGCAGTTTCCGC
TTGCTTGCGGTGACGTGGCCGCCAGTTTTGTGGGAGCGTGCGGTTGCTTATGTATAGGGGGTGAA
AAATACCCGCCTTGGGACAAACGTGTTGATGCGGTGTCACAAGTCAAAGCGTGGTTTAGTGTTTT
GACTTTGGTAGTTTGTGTCCATTTCTTCAATCATTTGTGCTATTTCTATTGCTTACCTTTTCCTT
CGCTTTCAACTTTCTCCTCCACTCTTCTTTCATTCTTCTTTGTAC
Right flanking sequence: Indices 4047 -- 4546
CATTGTCTGTCTTTCTCAAGTCCACTGTCCCACCTACCGCCTCAGGCGTTTCAGCCACACCGTCA
GGGCTCGAACACGCTTAGCCACTGGATCTCGAATCACAGGTAATCGCACGTTAGATTGCTTTGAT
CTCGCCAACAAAGTACGACCCCTCTCGCCTACCCCAGCAATCCACCCCGGACCTCGTAGCTGCTG
GGTGCTGCCTCCACCCCACTGACAGCAGCGTGCCGTCGTAAACCACCGCCCGCCCCTGGACCCGC
AGCACGTGTATGACATCATCGTGAATAGATCATCGAAACCTTAGTACGATCCCAGGCAGCCAGGT
ACAATGCCGGCATAAACCTTGCTGCCCCAGCAAGCCAGCCCGCCCTACACGTTCAGTAGCCCGTA
AAAATCCACCCCTACACCCGTTCCTACGCCCATCGGCTCGGCCGGCCCTTTTTGCCGCCCGGCCG
CGACCGCGTTCGTTGGCATATTGTTGAGGCAACCGAAGGCTGCCA
Found at i:4036 original size:14 final size:14
Alignment explanation
Indices: 3989--4030 Score: 66
Period size: 14 Copynumber: 2.9 Consensus size: 14
3979 CTTCTTTGTA
3989 CCTTCTTTCTTTCTT
1 CCTTCTTTC-TTCTT
4004 CCTTCTTTCTTCTT
1 CCTTCTTTCTTCTT
*
4018 CCTTCTTCCTTCT
1 CCTTCTTTCTTCT
4031 CTCTTCGTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
14 17 0.65
15 9 0.35
ACGTcount: A:0.00, C:0.38, G:0.00, T:0.62
Consensus pattern (14 bp):
CCTTCTTTCTTCTT
Left flanking sequence: Indices 3489 -- 3988
GGGCTGTGTAGACGTAGTCATAGTGGTGCTGAACGTTGGGAAAAGTTGGGTAAACCGGTTTGGAA
ACTGAAAAGTTGGCCATGCCTGCTGACGTCATCGGGCTCACCGGGCCCGCCAGGTTTGGCGGACT
ACCCGGTCAGGTGAGAGTCAGGTGCCCACGGGTGCGGCGACAGAGGCGGCTACGTTGAGCCACCG
CCAGGGCCACTACCGTGGGGCGCCCGGGGTCGGCTCGGCCACATGCAGGCGGCCGGCAGTTTCCG
CTTGCTTGCGGTGACGTGGCCGCCAGTTTTGTGGGAGCGTGCGGTTGCTTATGTATAGGGGGTGA
AAAATACCCGCCTTGGGACAAACGTGTTGATGCGGTGTCACAAGTCAAAGCGTGGTTTAGTGTTT
TGACTTTGGTAGTTTGTGTCCATTTCTTCAATCATTTGTGCTATTTCTATTGCTTACCTTTTCCT
TCGCTTTCAACTTTCTCCTCCACTCTTCTTTCATTCTTCTTTGTA
Right flanking sequence: Indices 4031 -- 4530
CTCTTCGTCTCTTCTTCATTGTCTGTCTTTCTCAAGTCCACTGTCCCACCTACCGCCTCAGGCGT
TTCAGCCACACCGTCAGGGCTCGAACACGCTTAGCCACTGGATCTCGAATCACAGGTAATCGCAC
GTTAGATTGCTTTGATCTCGCCAACAAAGTACGACCCCTCTCGCCTACCCCAGCAATCCACCCCG
GACCTCGTAGCTGCTGGGTGCTGCCTCCACCCCACTGACAGCAGCGTGCCGTCGTAAACCACCGC
CCGCCCCTGGACCCGCAGCACGTGTATGACATCATCGTGAATAGATCATCGAAACCTTAGTACGA
TCCCAGGCAGCCAGGTACAATGCCGGCATAAACCTTGCTGCCCCAGCAAGCCAGCCCGCCCTACA
CGTTCAGTAGCCCGTAAAAATCCACCCCTACACCCGTTCCTACGCCCATCGGCTCGGCCGGCCCT
TTTTGCCGCCCGGCCGCGACCGCGTTCGTTGGCATATTGTTGAGG
Found at i:20746 original size:15 final size:15
Alignment explanation
Indices: 20715--20856 Score: 162
Period size: 15 Copynumber: 10.2 Consensus size: 15
20705 AAGAGTGGTG
20715 ATCAGAGAATA-GCC
1 ATCAGAGAATAGGCC
20729 ATCAGAGAATAGGCC
1 ATCAGAGAATAGGCC
20744 ATCAGAGAAT----C
1 ATCAGAGAATAGGCC
20755 ATCAGAGAATAGGCC
1 ATCAGAGAATAGGCC
20770 ATCAGAGAATAGGCC
1 ATCAGAGAATAGGCC
20785 ATC--AG---A-GCC
1 ATCAGAGAATAGGCC
20794 ATCAGAGAATAGGCC
1 ATCAGAGAATAGGCC
* *
20809 ATCAAAGAAGAGGCC
1 ATCAGAGAATAGGCC
*
20824 ATCAGGGAATAGGCC
1 ATCAGAGAATAGGCC
* *
20839 ATCAGGGAATAAGCC
1 ATCAGAGAATAGGCC
20854 ATC
1 ATC
20857 TGAAGAATTA
Statistics
Matches: 111, Mismatches: 6, Indels: 21
0.80 0.04 0.15
Matches are distributed among these distances:
9 6 0.05
10 1 0.01
11 13 0.12
13 2 0.02
14 12 0.11
15 77 0.69
ACGTcount: A:0.40, C:0.21, G:0.25, T:0.13
Consensus pattern (15 bp):
ATCAGAGAATAGGCC
Left flanking sequence: Indices 20215 -- 20714
CCAGGTGGACAGCCACAACATCGTCGAGCAGAACGACGCCGACAAGCCGTTCGACAAGGTGTTTG
GCGACATTTCCGAGAAGATCTACGACGAGGTCAACGCCGAGGTGAACAAGTACGTGCCCAAGAAG
TGGCGCCAGGCGGCGGAGGACTTGGTGACGCCCAAGGAGTACGAGTTCACCGAGCGGGTGCAGCC
CGAGACCGAGCGCGAGGCCGCGGTGAACACCATCATCAACTTGATCCCCTATCTCCCGTTGTCGC
TGTTCACGGCGTGGCTCGACAAGATCTACGGGTTGATTGCGGTGCTGAGCCCCAGCGAGCGGTTG
TACTTGCTGCGGTCGTTGTGGGTGGTGATTGGGATGTCGCTTGACCTCAACCGGTGCGAGTTGGC
GTACCCGTGGTGGTACGAGAAGGTGCGGATGCCCGAGAACAAGCCGTTTATGTCGAAGTTTTAGA
GTCTATAGAGAATGATGAAGTAATGTGTAGTAGCTAAGAGTGGTG
Right flanking sequence: Indices 20857 -- 21356
TGAAGAATTAAGTTGAGCCATGTTCAATGAGCAGGTTCTATGGGCCTTTGGCAGCGTAGTTCGGA
GAGCCAGACCTGAAGTCTTTCTGGGTATAACCACTCAAAACATTTACCAATGGAGCTTTTGAGCT
AGTTTCGTGACTAAGTCCAACCGTAGAAGCCCCATCCTTCTTCAAACGTAGACTCTCCACCTAAT
ACTACCACACCACTACGTGTATGCAATTCGACTATATATATGCTAGATTGTCCAAGTACAACTTC
TTCTCGAGGTTCCGCCGACACGTCTGGGTGTCGCGGTGGCGCTTCAACGCGTCCTTGCGGGCAAA
ACCCTTGCCACACAAGTCGCAGATATTAGGTGGTTGCACCAAGTGCTGTTTTTCGTGGCGCTTCA
AGTCCAGCAGGCGCCTGAACCCCTGCGAGCACTTGGGACACTGGAACTTGCGCTCCTCGTCGTAA
GCGTCGTAGTCGTTCGACAGCGGAGGCAGCTGGGCCACCGGAGGG
Found at i:20757 original size:26 final size:26
Alignment explanation
Indices: 20728--20779 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
20718 AGAGAATAGC
20728 CATCAGAGAATAGGCCATCAGAGAAT
1 CATCAGAGAATAGGCCATCAGAGAAT
20754 CATCAGAGAATAGGCCATCAGAGAAT
1 CATCAGAGAATAGGCCATCAGAGAAT
20780 AGGCCATCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.19, G:0.23, T:0.15
Consensus pattern (26 bp):
CATCAGAGAATAGGCCATCAGAGAAT
Left flanking sequence: Indices 20228 -- 20727
CACAACATCGTCGAGCAGAACGACGCCGACAAGCCGTTCGACAAGGTGTTTGGCGACATTTCCGA
GAAGATCTACGACGAGGTCAACGCCGAGGTGAACAAGTACGTGCCCAAGAAGTGGCGCCAGGCGG
CGGAGGACTTGGTGACGCCCAAGGAGTACGAGTTCACCGAGCGGGTGCAGCCCGAGACCGAGCGC
GAGGCCGCGGTGAACACCATCATCAACTTGATCCCCTATCTCCCGTTGTCGCTGTTCACGGCGTG
GCTCGACAAGATCTACGGGTTGATTGCGGTGCTGAGCCCCAGCGAGCGGTTGTACTTGCTGCGGT
CGTTGTGGGTGGTGATTGGGATGTCGCTTGACCTCAACCGGTGCGAGTTGGCGTACCCGTGGTGG
TACGAGAAGGTGCGGATGCCCGAGAACAAGCCGTTTATGTCGAAGTTTTAGAGTCTATAGAGAAT
GATGAAGTAATGTGTAGTAGCTAAGAGTGGTGATCAGAGAATAGC
Right flanking sequence: Indices 20780 -- 21279
AGGCCATCAGAGCCATCAGAGAATAGGCCATCAAAGAAGAGGCCATCAGGGAATAGGCCATCAGG
GAATAAGCCATCTGAAGAATTAAGTTGAGCCATGTTCAATGAGCAGGTTCTATGGGCCTTTGGCA
GCGTAGTTCGGAGAGCCAGACCTGAAGTCTTTCTGGGTATAACCACTCAAAACATTTACCAATGG
AGCTTTTGAGCTAGTTTCGTGACTAAGTCCAACCGTAGAAGCCCCATCCTTCTTCAAACGTAGAC
TCTCCACCTAATACTACCACACCACTACGTGTATGCAATTCGACTATATATATGCTAGATTGTCC
AAGTACAACTTCTTCTCGAGGTTCCGCCGACACGTCTGGGTGTCGCGGTGGCGCTTCAACGCGTC
CTTGCGGGCAAAACCCTTGCCACACAAGTCGCAGATATTAGGTGGTTGCACCAAGTGCTGTTTTT
CGTGGCGCTTCAAGTCCAGCAGGCGCCTGAACCCCTGCGAGCACT
Found at i:20778 original size:41 final size:41
Alignment explanation
Indices: 20715--20833 Score: 181
Period size: 39 Copynumber: 3.0 Consensus size: 41
20705 AAGAGTGGTG
20715 ATCAGAGAATA-GCCATCAGAGAATAGGCCATCAGAGAATC
1 ATCAGAGAATAGGCCATCAGAGAATAGGCCATCAGAGAATC
*
20755 ATCAGAGAATAGGCCATCAGAGAATAGGCCATCAGAG--CC
1 ATCAGAGAATAGGCCATCAGAGAATAGGCCATCAGAGAATC
* * *
20794 ATCAGAGAATAGGCCATCAAAGAAGAGGCCATCAGGGAAT
1 ATCAGAGAATAGGCCATCAGAGAATAGGCCATCAGAGAAT
20834 AGGCCATCAG
Statistics
Matches: 71, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
39 35 0.49
40 11 0.15
41 25 0.35
ACGTcount: A:0.41, C:0.20, G:0.25, T:0.13
Consensus pattern (41 bp):
ATCAGAGAATAGGCCATCAGAGAATAGGCCATCAGAGAATC
Left flanking sequence: Indices 20215 -- 20714
CCAGGTGGACAGCCACAACATCGTCGAGCAGAACGACGCCGACAAGCCGTTCGACAAGGTGTTTG
GCGACATTTCCGAGAAGATCTACGACGAGGTCAACGCCGAGGTGAACAAGTACGTGCCCAAGAAG
TGGCGCCAGGCGGCGGAGGACTTGGTGACGCCCAAGGAGTACGAGTTCACCGAGCGGGTGCAGCC
CGAGACCGAGCGCGAGGCCGCGGTGAACACCATCATCAACTTGATCCCCTATCTCCCGTTGTCGC
TGTTCACGGCGTGGCTCGACAAGATCTACGGGTTGATTGCGGTGCTGAGCCCCAGCGAGCGGTTG
TACTTGCTGCGGTCGTTGTGGGTGGTGATTGGGATGTCGCTTGACCTCAACCGGTGCGAGTTGGC
GTACCCGTGGTGGTACGAGAAGGTGCGGATGCCCGAGAACAAGCCGTTTATGTCGAAGTTTTAGA
GTCTATAGAGAATGATGAAGTAATGTGTAGTAGCTAAGAGTGGTG
Right flanking sequence: Indices 20834 -- 21333
AGGCCATCAGGGAATAAGCCATCTGAAGAATTAAGTTGAGCCATGTTCAATGAGCAGGTTCTATG
GGCCTTTGGCAGCGTAGTTCGGAGAGCCAGACCTGAAGTCTTTCTGGGTATAACCACTCAAAACA
TTTACCAATGGAGCTTTTGAGCTAGTTTCGTGACTAAGTCCAACCGTAGAAGCCCCATCCTTCTT
CAAACGTAGACTCTCCACCTAATACTACCACACCACTACGTGTATGCAATTCGACTATATATATG
CTAGATTGTCCAAGTACAACTTCTTCTCGAGGTTCCGCCGACACGTCTGGGTGTCGCGGTGGCGC
TTCAACGCGTCCTTGCGGGCAAAACCCTTGCCACACAAGTCGCAGATATTAGGTGGTTGCACCAA
GTGCTGTTTTTCGTGGCGCTTCAAGTCCAGCAGGCGCCTGAACCCCTGCGAGCACTTGGGACACT
GGAACTTGCGCTCCTCGTCGTAAGCGTCGTAGTCGTTCGACAGCG
Found at i:20799 original size:24 final size:24
Alignment explanation
Indices: 20767--20812 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
20757 CAGAGAATAG
20767 GCCATCAGAGAATAGGCCATCAGA
1 GCCATCAGAGAATAGGCCATCAGA
20791 GCCATCAGAGAATAGGCCATCA
1 GCCATCAGAGAATAGGCCATCA
20813 AAGAAGAGGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.37, C:0.26, G:0.24, T:0.13
Consensus pattern (24 bp):
GCCATCAGAGAATAGGCCATCAGA
Left flanking sequence: Indices 20267 -- 20766
GACAAGGTGTTTGGCGACATTTCCGAGAAGATCTACGACGAGGTCAACGCCGAGGTGAACAAGTA
CGTGCCCAAGAAGTGGCGCCAGGCGGCGGAGGACTTGGTGACGCCCAAGGAGTACGAGTTCACCG
AGCGGGTGCAGCCCGAGACCGAGCGCGAGGCCGCGGTGAACACCATCATCAACTTGATCCCCTAT
CTCCCGTTGTCGCTGTTCACGGCGTGGCTCGACAAGATCTACGGGTTGATTGCGGTGCTGAGCCC
CAGCGAGCGGTTGTACTTGCTGCGGTCGTTGTGGGTGGTGATTGGGATGTCGCTTGACCTCAACC
GGTGCGAGTTGGCGTACCCGTGGTGGTACGAGAAGGTGCGGATGCCCGAGAACAAGCCGTTTATG
TCGAAGTTTTAGAGTCTATAGAGAATGATGAAGTAATGTGTAGTAGCTAAGAGTGGTGATCAGAG
AATAGCCATCAGAGAATAGGCCATCAGAGAATCATCAGAGAATAG
Right flanking sequence: Indices 20813 -- 21312
AAGAAGAGGCCATCAGGGAATAGGCCATCAGGGAATAAGCCATCTGAAGAATTAAGTTGAGCCAT
GTTCAATGAGCAGGTTCTATGGGCCTTTGGCAGCGTAGTTCGGAGAGCCAGACCTGAAGTCTTTC
TGGGTATAACCACTCAAAACATTTACCAATGGAGCTTTTGAGCTAGTTTCGTGACTAAGTCCAAC
CGTAGAAGCCCCATCCTTCTTCAAACGTAGACTCTCCACCTAATACTACCACACCACTACGTGTA
TGCAATTCGACTATATATATGCTAGATTGTCCAAGTACAACTTCTTCTCGAGGTTCCGCCGACAC
GTCTGGGTGTCGCGGTGGCGCTTCAACGCGTCCTTGCGGGCAAAACCCTTGCCACACAAGTCGCA
GATATTAGGTGGTTGCACCAAGTGCTGTTTTTCGTGGCGCTTCAAGTCCAGCAGGCGCCTGAACC
CCTGCGAGCACTTGGGACACTGGAACTTGCGCTCCTCGTCGTAAG
Found at i:25811 original size:6 final size:6
Alignment explanation
Indices: 25800--25883 Score: 51
Period size: 6 Copynumber: 14.0 Consensus size: 6
25790 TCACTGCTGA
* * ** * ** *
25800 CAAGTC CAAGTC CGACTC CAAGTC TGACTC CAAGTC TGACTC CAAGTC
1 CAAGTC CAAGTC CAAGTC CAAGTC CAAGTC CAAGTC CAAGTC CAAGTC
* * * * *
25848 GAAGTC CGAGTC TAAGTC CGAGTC CAAGAC CAAGTC
1 CAAGTC CAAGTC CAAGTC CAAGTC CAAGTC CAAGTC
25884 TGACGGCAAG
Statistics
Matches: 52, Mismatches: 26, Indels: 0
0.67 0.33 0.00
Matches are distributed among these distances:
6 52 1.00
ACGTcount: A:0.29, C:0.32, G:0.20, T:0.19
Consensus pattern (6 bp):
CAAGTC
Left flanking sequence: Indices 25300 -- 25799
TGGTCGGCAGCGTGAATCGACCCCTGACGAAATCGTGACCCTTATCTCTCGCCTGTAGCGCCACA
TTTCCCCAGTTTTATTTCAGCCGTACCATGTGGGGTACGTCACAAGAGCGTTTCACGAGCGAACA
ATGCAGCTCAGCCACGGGTATAAATAATGGACGCTTCCTCGGGTGTTGGGCCAATGCTTTCGCTT
TCTATTTTTGCCCTTGTTGCTGTGGCCGTTGCCCAGGACGTTTACACTATTGAGGACGGTGAGAC
CTTCGTGTTGGTCAAGCCTGAGGACGCCACCAAGATGATGGGCCAGTACGGCTTTGGCGACGCCA
CTGCCGGGTTGAAGTACTACTCGTCGCTTTACGAGCAGTACGACGGTAAGATCCCCTTCGGTACC
CTCACTGCCAAGATCTACGAGGACGCGGGTCTTGCCACCGCTGTCGAGGAGTTTGCCTCCGTCTC
CGACTTGTCTGGGTTGTCGTCGCTTGTGGACTCTGTCACTGCTGA
Right flanking sequence: Indices 25884 -- 26383
TGACGGCAAGTCCGAGTCCAACGCGGCTGCCGTTGGTGGTATGGCTGCTGGTGCCATTGGTGCCA
TCGCCGGGATTTTGCTTTTGTAGATCAATCAACAGACTGTAGGATCGACAAACTGTAGGATCCAC
AAACTGTAGGATCGACAAACTGTAGGATCGACAAACCGTGTAGGATCGACTACCGGGTAGGTAAA
CTGTACTAGTAGTGTTCTATGTAGGTAGCCGTGTTAGGGCTAATGCTATGCTATCGACGCATTCT
CCGCTTAAATCTCGCGGTTCTCGGGTCGTTTATCTTCAACCGCTGGTAGTTCCGGCTCACGGGCG
CCACCCCGTTCTTCACGGGCGCCGGGCGTTTGTACTCGAACTCGTCCTCCAGCTCCAGCTCCTCC
TTGTCCAGCGCGTCCACCTGAGTGTTGAGTTTGCGCTTTTGGCGGAGAATGTCCTCTGTTTTGAC
TTCCACCTCCTTGGTGCTTTCTTTGATGCGGTCGAGCTCGGCGTG
Found at i:25821 original size:12 final size:12
Alignment explanation
Indices: 25804--25847 Score: 79
Period size: 12 Copynumber: 3.7 Consensus size: 12
25794 TGCTGACAAG
*
25804 TCCAAGTCCGAC
1 TCCAAGTCTGAC
25816 TCCAAGTCTGAC
1 TCCAAGTCTGAC
25828 TCCAAGTCTGAC
1 TCCAAGTCTGAC
25840 TCCAAGTC
1 TCCAAGTC
25848 GAAGTCCGAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.25, C:0.36, G:0.16, T:0.23
Consensus pattern (12 bp):
TCCAAGTCTGAC
Left flanking sequence: Indices 25304 -- 25803
CGGCAGCGTGAATCGACCCCTGACGAAATCGTGACCCTTATCTCTCGCCTGTAGCGCCACATTTC
CCCAGTTTTATTTCAGCCGTACCATGTGGGGTACGTCACAAGAGCGTTTCACGAGCGAACAATGC
AGCTCAGCCACGGGTATAAATAATGGACGCTTCCTCGGGTGTTGGGCCAATGCTTTCGCTTTCTA
TTTTTGCCCTTGTTGCTGTGGCCGTTGCCCAGGACGTTTACACTATTGAGGACGGTGAGACCTTC
GTGTTGGTCAAGCCTGAGGACGCCACCAAGATGATGGGCCAGTACGGCTTTGGCGACGCCACTGC
CGGGTTGAAGTACTACTCGTCGCTTTACGAGCAGTACGACGGTAAGATCCCCTTCGGTACCCTCA
CTGCCAAGATCTACGAGGACGCGGGTCTTGCCACCGCTGTCGAGGAGTTTGCCTCCGTCTCCGAC
TTGTCTGGGTTGTCGTCGCTTGTGGACTCTGTCACTGCTGACAAG
Right flanking sequence: Indices 25848 -- 26347
GAAGTCCGAGTCTAAGTCCGAGTCCAAGACCAAGTCTGACGGCAAGTCCGAGTCCAACGCGGCTG
CCGTTGGTGGTATGGCTGCTGGTGCCATTGGTGCCATCGCCGGGATTTTGCTTTTGTAGATCAAT
CAACAGACTGTAGGATCGACAAACTGTAGGATCCACAAACTGTAGGATCGACAAACTGTAGGATC
GACAAACCGTGTAGGATCGACTACCGGGTAGGTAAACTGTACTAGTAGTGTTCTATGTAGGTAGC
CGTGTTAGGGCTAATGCTATGCTATCGACGCATTCTCCGCTTAAATCTCGCGGTTCTCGGGTCGT
TTATCTTCAACCGCTGGTAGTTCCGGCTCACGGGCGCCACCCCGTTCTTCACGGGCGCCGGGCGT
TTGTACTCGAACTCGTCCTCCAGCTCCAGCTCCTCCTTGTCCAGCGCGTCCACCTGAGTGTTGAG
TTTGCGCTTTTGGCGGAGAATGTCCTCTGTTTTGACTTCCACCTC
Found at i:25859 original size:24 final size:24
Alignment explanation
Indices: 25801--25904 Score: 86
Period size: 24 Copynumber: 4.3 Consensus size: 24
25791 CACTGCTGAC
*
25801 AAGTCCAAGTCCGACTCCAAGTCTG
1 AAGTCCAAGTCTGACTCCAAGTC-G
*
25826 -ACTCCAAGTCTGACTCCAAGTCG
1 AAGTCCAAGTCTGACTCCAAGTCG
* * * * *
25849 AAGTCCGAGTCTAAGTCCGAGTCC
1 AAGTCCAAGTCTGACTCCAAGTCG
* **
25873 AAGACCAAGTCTGACGGCAAGTCCG
1 AAGTCCAAGTCTGACTCCAAGT-CG
25898 -AGTCCAA
1 AAGTCCAA
25905 CGCGGCTGCC
Statistics
Matches: 60, Mismatches: 17, Indels: 5
0.73 0.21 0.06
Matches are distributed among these distances:
23 1 0.02
24 58 0.97
25 1 0.02
ACGTcount: A:0.29, C:0.31, G:0.22, T:0.18
Consensus pattern (24 bp):
AAGTCCAAGTCTGACTCCAAGTCG
Left flanking sequence: Indices 25301 -- 25800
GGTCGGCAGCGTGAATCGACCCCTGACGAAATCGTGACCCTTATCTCTCGCCTGTAGCGCCACAT
TTCCCCAGTTTTATTTCAGCCGTACCATGTGGGGTACGTCACAAGAGCGTTTCACGAGCGAACAA
TGCAGCTCAGCCACGGGTATAAATAATGGACGCTTCCTCGGGTGTTGGGCCAATGCTTTCGCTTT
CTATTTTTGCCCTTGTTGCTGTGGCCGTTGCCCAGGACGTTTACACTATTGAGGACGGTGAGACC
TTCGTGTTGGTCAAGCCTGAGGACGCCACCAAGATGATGGGCCAGTACGGCTTTGGCGACGCCAC
TGCCGGGTTGAAGTACTACTCGTCGCTTTACGAGCAGTACGACGGTAAGATCCCCTTCGGTACCC
TCACTGCCAAGATCTACGAGGACGCGGGTCTTGCCACCGCTGTCGAGGAGTTTGCCTCCGTCTCC
GACTTGTCTGGGTTGTCGTCGCTTGTGGACTCTGTCACTGCTGAC
Right flanking sequence: Indices 25905 -- 26404
CGCGGCTGCCGTTGGTGGTATGGCTGCTGGTGCCATTGGTGCCATCGCCGGGATTTTGCTTTTGT
AGATCAATCAACAGACTGTAGGATCGACAAACTGTAGGATCCACAAACTGTAGGATCGACAAACT
GTAGGATCGACAAACCGTGTAGGATCGACTACCGGGTAGGTAAACTGTACTAGTAGTGTTCTATG
TAGGTAGCCGTGTTAGGGCTAATGCTATGCTATCGACGCATTCTCCGCTTAAATCTCGCGGTTCT
CGGGTCGTTTATCTTCAACCGCTGGTAGTTCCGGCTCACGGGCGCCACCCCGTTCTTCACGGGCG
CCGGGCGTTTGTACTCGAACTCGTCCTCCAGCTCCAGCTCCTCCTTGTCCAGCGCGTCCACCTGA
GTGTTGAGTTTGCGCTTTTGGCGGAGAATGTCCTCTGTTTTGACTTCCACCTCCTTGGTGCTTTC
TTTGATGCGGTCGAGCTCGGCGTGGATGTCCTTGCCGTCCAACGA
Found at i:25895 original size:30 final size:30
Alignment explanation
Indices: 25817--25904 Score: 88
Period size: 30 Copynumber: 2.9 Consensus size: 30
25807 AAGTCCGACT
* * * *
25817 CCAAGTCTGACTCCAAGTCTGACTCCAAGT
1 CCAAGTCTGACGCCAAGTCCGAGTCCAAGA
* * *
25847 CGAAGTCCGA-GTCTAAGTCCGAGTCCAAGA
1 CCAAGTCTGACG-CCAAGTCCGAGTCCAAGA
*
25877 CCAAGTCTGACGGCAAGTCCGAGTCCAA
1 CCAAGTCTGACGCCAAGTCCGAGTCCAA
25905 CGCGGCTGCC
Statistics
Matches: 45, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
30 44 0.98
31 1 0.02
ACGTcount: A:0.28, C:0.31, G:0.23, T:0.18
Consensus pattern (30 bp):
CCAAGTCTGACGCCAAGTCCGAGTCCAAGA
Left flanking sequence: Indices 25317 -- 25816
CGACCCCTGACGAAATCGTGACCCTTATCTCTCGCCTGTAGCGCCACATTTCCCCAGTTTTATTT
CAGCCGTACCATGTGGGGTACGTCACAAGAGCGTTTCACGAGCGAACAATGCAGCTCAGCCACGG
GTATAAATAATGGACGCTTCCTCGGGTGTTGGGCCAATGCTTTCGCTTTCTATTTTTGCCCTTGT
TGCTGTGGCCGTTGCCCAGGACGTTTACACTATTGAGGACGGTGAGACCTTCGTGTTGGTCAAGC
CTGAGGACGCCACCAAGATGATGGGCCAGTACGGCTTTGGCGACGCCACTGCCGGGTTGAAGTAC
TACTCGTCGCTTTACGAGCAGTACGACGGTAAGATCCCCTTCGGTACCCTCACTGCCAAGATCTA
CGAGGACGCGGGTCTTGCCACCGCTGTCGAGGAGTTTGCCTCCGTCTCCGACTTGTCTGGGTTGT
CGTCGCTTGTGGACTCTGTCACTGCTGACAAGTCCAAGTCCGACT
Right flanking sequence: Indices 25905 -- 26404
CGCGGCTGCCGTTGGTGGTATGGCTGCTGGTGCCATTGGTGCCATCGCCGGGATTTTGCTTTTGT
AGATCAATCAACAGACTGTAGGATCGACAAACTGTAGGATCCACAAACTGTAGGATCGACAAACT
GTAGGATCGACAAACCGTGTAGGATCGACTACCGGGTAGGTAAACTGTACTAGTAGTGTTCTATG
TAGGTAGCCGTGTTAGGGCTAATGCTATGCTATCGACGCATTCTCCGCTTAAATCTCGCGGTTCT
CGGGTCGTTTATCTTCAACCGCTGGTAGTTCCGGCTCACGGGCGCCACCCCGTTCTTCACGGGCG
CCGGGCGTTTGTACTCGAACTCGTCCTCCAGCTCCAGCTCCTCCTTGTCCAGCGCGTCCACCTGA
GTGTTGAGTTTGCGCTTTTGGCGGAGAATGTCCTCTGTTTTGACTTCCACCTCCTTGGTGCTTTC
TTTGATGCGGTCGAGCTCGGCGTGGATGTCCTTGCCGTCCAACGA
Found at i:26005 original size:16 final size:16
Alignment explanation
Indices: 25984--26063 Score: 133
Period size: 16 Copynumber: 4.9 Consensus size: 16
25974 CAATCAACAG
25984 ACTGTAGGATCGACAA
1 ACTGTAGGATCGACAA
*
26000 ACTGTAGGATCCACAA
1 ACTGTAGGATCGACAA
26016 ACTGTAGGATCGACAA
1 ACTGTAGGATCGACAA
26032 ACTGTAGGATCGACAA
1 ACTGTAGGATCGACAA
26048 ACCGTGTAGGATCGAC
1 A-C-TGTAGGATCGAC
26064 TACCGGGTAG
Statistics
Matches: 60, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
16 47 0.78
17 1 0.02
18 12 0.20
ACGTcount: A:0.35, C:0.21, G:0.25, T:0.19
Consensus pattern (16 bp):
ACTGTAGGATCGACAA
Left flanking sequence: Indices 25484 -- 25983
TGCTTTCGCTTTCTATTTTTGCCCTTGTTGCTGTGGCCGTTGCCCAGGACGTTTACACTATTGAG
GACGGTGAGACCTTCGTGTTGGTCAAGCCTGAGGACGCCACCAAGATGATGGGCCAGTACGGCTT
TGGCGACGCCACTGCCGGGTTGAAGTACTACTCGTCGCTTTACGAGCAGTACGACGGTAAGATCC
CCTTCGGTACCCTCACTGCCAAGATCTACGAGGACGCGGGTCTTGCCACCGCTGTCGAGGAGTTT
GCCTCCGTCTCCGACTTGTCTGGGTTGTCGTCGCTTGTGGACTCTGTCACTGCTGACAAGTCCAA
GTCCGACTCCAAGTCTGACTCCAAGTCTGACTCCAAGTCGAAGTCCGAGTCTAAGTCCGAGTCCA
AGACCAAGTCTGACGGCAAGTCCGAGTCCAACGCGGCTGCCGTTGGTGGTATGGCTGCTGGTGCC
ATTGGTGCCATCGCCGGGATTTTGCTTTTGTAGATCAATCAACAG
Right flanking sequence: Indices 26064 -- 26563
TACCGGGTAGGTAAACTGTACTAGTAGTGTTCTATGTAGGTAGCCGTGTTAGGGCTAATGCTATG
CTATCGACGCATTCTCCGCTTAAATCTCGCGGTTCTCGGGTCGTTTATCTTCAACCGCTGGTAGT
TCCGGCTCACGGGCGCCACCCCGTTCTTCACGGGCGCCGGGCGTTTGTACTCGAACTCGTCCTCC
AGCTCCAGCTCCTCCTTGTCCAGCGCGTCCACCTGAGTGTTGAGTTTGCGCTTTTGGCGGAGAAT
GTCCTCTGTTTTGACTTCCACCTCCTTGGTGCTTTCTTTGATGCGGTCGAGCTCGGCGTGGATGT
CCTTGCCGTCCAACGACGCGCCCGTCTCGGCCATCCCCCGGGGTTTGATGCGCCAGTTACGCGTC
GTGCGCTTCTGGGTCTGTGCTCGCTTTCTCTTGACGGGGCTCCCCTCGGTTGCGGGCTCCTCGTC
CTCCTCTTCGTCTTGGTCGCTCTCCATTTTGAGCACGTTGCCGTC
Found at i:26073 original size:17 final size:18
Alignment explanation
Indices: 25987--26074 Score: 73
Period size: 16 Copynumber: 5.3 Consensus size: 18
25977 TCAACAGACT
*
25987 GTAGGATCGACAAA-C-T
1 GTAGGATCGACAAACCGG
* *
26003 GTAGGATCCACAAA-C-T
1 GTAGGATCGACAAACCGG
*
26019 GTAGGATCGACAAA-C-T
1 GTAGGATCGACAAACCGG
*
26035 GTAGGATCGACAAACCGT
1 GTAGGATCGACAAACCGG
*
26053 GTAGGATCGAC-TACCGG
1 GTAGGATCGACAAACCGG
26070 GTAGG
1 GTAGG
26075 TAAACTGTAC
Statistics
Matches: 66, Mismatches: 4, Indels: 3
0.90 0.05 0.04
Matches are distributed among these distances:
16 44 0.67
17 10 0.15
18 12 0.18
ACGTcount: A:0.33, C:0.20, G:0.28, T:0.18
Consensus pattern (18 bp):
GTAGGATCGACAAACCGG
Left flanking sequence: Indices 25487 -- 25986
TTTCGCTTTCTATTTTTGCCCTTGTTGCTGTGGCCGTTGCCCAGGACGTTTACACTATTGAGGAC
GGTGAGACCTTCGTGTTGGTCAAGCCTGAGGACGCCACCAAGATGATGGGCCAGTACGGCTTTGG
CGACGCCACTGCCGGGTTGAAGTACTACTCGTCGCTTTACGAGCAGTACGACGGTAAGATCCCCT
TCGGTACCCTCACTGCCAAGATCTACGAGGACGCGGGTCTTGCCACCGCTGTCGAGGAGTTTGCC
TCCGTCTCCGACTTGTCTGGGTTGTCGTCGCTTGTGGACTCTGTCACTGCTGACAAGTCCAAGTC
CGACTCCAAGTCTGACTCCAAGTCTGACTCCAAGTCGAAGTCCGAGTCTAAGTCCGAGTCCAAGA
CCAAGTCTGACGGCAAGTCCGAGTCCAACGCGGCTGCCGTTGGTGGTATGGCTGCTGGTGCCATT
GGTGCCATCGCCGGGATTTTGCTTTTGTAGATCAATCAACAGACT
Right flanking sequence: Indices 26075 -- 26574
TAAACTGTACTAGTAGTGTTCTATGTAGGTAGCCGTGTTAGGGCTAATGCTATGCTATCGACGCA
TTCTCCGCTTAAATCTCGCGGTTCTCGGGTCGTTTATCTTCAACCGCTGGTAGTTCCGGCTCACG
GGCGCCACCCCGTTCTTCACGGGCGCCGGGCGTTTGTACTCGAACTCGTCCTCCAGCTCCAGCTC
CTCCTTGTCCAGCGCGTCCACCTGAGTGTTGAGTTTGCGCTTTTGGCGGAGAATGTCCTCTGTTT
TGACTTCCACCTCCTTGGTGCTTTCTTTGATGCGGTCGAGCTCGGCGTGGATGTCCTTGCCGTCC
AACGACGCGCCCGTCTCGGCCATCCCCCGGGGTTTGATGCGCCAGTTACGCGTCGTGCGCTTCTG
GGTCTGTGCTCGCTTTCTCTTGACGGGGCTCCCCTCGGTTGCGGGCTCCTCGTCCTCCTCTTCGT
CTTGGTCGCTCTCCATTTTGAGCACGTTGCCGTCCTCGTCCTTGA
Found at i:27457 original size:11 final size:11
Alignment explanation
Indices: 27441--27483 Score: 68
Period size: 11 Copynumber: 3.9 Consensus size: 11
27431 ACAACTAGGT
27441 AGTACCATCCC
1 AGTACCATCCC
*
27452 AGTACCATTCC
1 AGTACCATCCC
*
27463 AGTACTATCCC
1 AGTACCATCCC
27474 AGTACCATCC
1 AGTACCATCC
27484 ACTTGGCTTA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.28, C:0.40, G:0.09, T:0.23
Consensus pattern (11 bp):
AGTACCATCCC
Left flanking sequence: Indices 26941 -- 27440
GAGTGGGTCCCAACTCGTCCTGGAGGATCTCTGGTTCTTTGGATGGCTTCTTTTCGGGGGTCCCG
TGCTTCATTTCGCTGTACGCCTTGTATAGCTTGCGCACGGTGGCATCCTGTTTGATGTCCAGCTT
CTCGGGGTTGCGGCCGTGCTTTTTGTAAAACAGCTTTTCCCATTGCTTGATCGTGGCTCGGACCA
GCTCGAGATTCATGGGGGGATGGTTAACGCGCTGAGGGTTAATGAGACGCGTCGCGCTGATGCGT
ACAGGCGTTAAGAGCACGAACCGATGGGAGCGTAAAAGGCATCAAAGCGGTGTAAAATAGAAAAT
AGGGTAGTTGGGATGGTAATTGTCTTTATTGAGAGGAATAGTGTAGATGGTGGCGATATCGTGGC
CTCCAGTAGCCACCAAAATTTCGATTCTCTGATGGTTGAAAAAAAAGCTCACAAGACGACTAGCC
TTTTAGACCATTATGGCCTCTACCATGTGTGGAGTACAACTAGGT
Right flanking sequence: Indices 27484 -- 27983
ACTTGGCTTACTTGGATTACCTCAGGTTTCCAGTGCACCTGTTCGCACCCTTTGCCGGTGCTCGC
ACACAGCATCTATGTGCCCACAACACTCACTTTTAACATCCATTAAACGTATGCAAGGTATATAA
CATTAGAAGAGGGCCATGATCATGGCAGCCACCGCGGCGGAACCGGCGCCGGCGACGGCAGCACC
GTTGCCCGACTTGGAGTCGTCAGCGGACGAGGCAGCGGACGAGGCAGACTCCTTGGCGGAAGAGG
CCTTGGACTTGGCAGAGGACTCAGCCTTGGAGGCCTCGGACTTGACAGAGCTCGACTCGTCAGCG
TCGGTGGCAGAGGCAAGCGCAGACAGGGCCAGCTTGGTCACGGAAGCAAGTTCCGACAGGGCCTC
GGCGGTGGCGGAAGAAAGCTCCGAAGCAGCAGACTCCTTGTCAGACTCGGCGGACGAAGCAGCGG
ACTCGGCAACAGCGGCAGACGAGGCGGCAGCAGAGATGTCCGAAG
Found at i:27716 original size:12 final size:12
Alignment explanation
Indices: 27699--27725 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
27689 TTGGAGTCGT
27699 CAGCGGACGAGG
1 CAGCGGACGAGG
27711 CAGCGGACGAGG
1 CAGCGGACGAGG
27723 CAG
1 CAG
27726 ACTCCTTGGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.26, G:0.48, T:0.00
Consensus pattern (12 bp):
CAGCGGACGAGG
Left flanking sequence: Indices 27199 -- 27698
GTACAGGCGTTAAGAGCACGAACCGATGGGAGCGTAAAAGGCATCAAAGCGGTGTAAAATAGAAA
ATAGGGTAGTTGGGATGGTAATTGTCTTTATTGAGAGGAATAGTGTAGATGGTGGCGATATCGTG
GCCTCCAGTAGCCACCAAAATTTCGATTCTCTGATGGTTGAAAAAAAAGCTCACAAGACGACTAG
CCTTTTAGACCATTATGGCCTCTACCATGTGTGGAGTACAACTAGGTAGTACCATCCCAGTACCA
TTCCAGTACTATCCCAGTACCATCCACTTGGCTTACTTGGATTACCTCAGGTTTCCAGTGCACCT
GTTCGCACCCTTTGCCGGTGCTCGCACACAGCATCTATGTGCCCACAACACTCACTTTTAACATC
CATTAAACGTATGCAAGGTATATAACATTAGAAGAGGGCCATGATCATGGCAGCCACCGCGGCGG
AACCGGCGCCGGCGACGGCAGCACCGTTGCCCGACTTGGAGTCGT
Right flanking sequence: Indices 27726 -- 28225
ACTCCTTGGCGGAAGAGGCCTTGGACTTGGCAGAGGACTCAGCCTTGGAGGCCTCGGACTTGACA
GAGCTCGACTCGTCAGCGTCGGTGGCAGAGGCAAGCGCAGACAGGGCCAGCTTGGTCACGGAAGC
AAGTTCCGACAGGGCCTCGGCGGTGGCGGAAGAAAGCTCCGAAGCAGCAGACTCCTTGTCAGACT
CGGCGGACGAAGCAGCGGACTCGGCAACAGCGGCAGACGAGGCGGCAGCAGAGATGTCCGAAGCA
GAAGCAGCGGCCACCACGTCGGTACCGATGGTGGTGGTGTAGTAGTTGCCCCAGGGGATCGAGCC
CAGGTACTGGTCGTACATCGACGAGTACAAGGCAACCTGGGCGGGGATCAGGGCCAGGGGGAAGT
CACCGTTCAGCACGAGGTACGACGAAAAAGCCTCGGGAGACATGGTCAAGTAGGGGGTCTCAGAG
AGCGCGGCAGCCACCTCGTCAGCGTTGGTGGGCACCACCAAGGCG
Found at i:29131 original size:14 final size:14
Alignment explanation
Indices: 29112--29143 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
29102 CTTTTTGTAG
*
29112 TTGATAGTGTGTTC
1 TTGATAGTCTGTTC
29126 TTGATAGTCTGTTC
1 TTGATAGTCTGTTC
29140 TTGA
1 TTGA
29144 CAGGTTCATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.16, C:0.09, G:0.25, T:0.50
Consensus pattern (14 bp):
TTGATAGTCTGTTC
Left flanking sequence: Indices 28612 -- 29111
GGAGCGGGCCCCTGCCGGCGACATCGCGACAATGGTGAGTCACGAGTCACCCGTGAGCCGCGGTT
CGGGCGGGGCACACTGTCAACACAGCACGGCTGCTTTAGGAATAATCTGCACACCTGGGTACAGG
ACCGCATAGACAGTTACGGGTACAGTGGGCAGATTTGCGGGCCGAAGCGGCTAATATAAATGTCG
CAAGCGAGGGCTGGGTTAAATTGGCTGCATTCGTTTCGTGGGGTTGCGTGGGCCTCGACGAGGTC
GTTCGTCAATTAAGGTTTACGAGGCATCAACGGCGGCTATGCACGTGACCGAGCTAGGCGAAATT
AGCCCATATTTAGCCATGGCAGAAATTGTCAAAGCTTAAAGGCTGGGGTGGCTGCAGGTTCCAGG
ATAGGGGTGTAAGGAACGGGTGACCAAGTGCATGACGAAAGGTGGGTTTGAGGAACGGTTTGGGT
AATGGACTAGTTGTGAGGATAACGCGATTGTAAGACTTTTTGTAG
Right flanking sequence: Indices 29144 -- 29643
CAGGTTCATCGTCTCTTAGACCGCACGTCTCTGCTAGTGACGCCCTGGACTTGCTTCTATATTTG
ACTGCAGTGTCGTAGTATGGGGAAGGTGATACGATTGACCGGATTATCGTTGATCCGAATTTCTG
GGCAGACACGATGAGCTGGGTGAAGTGAGGGGCGAAGTGAGCTGGGCGGGGTGAGCTAAGCGAAG
TGAGTTGGTCGAAATGAGTTGGGCGAATTGAGTTGGGCGAATTGAGTTGGGCAAAGTGAGTTGGG
CGAAGTGTCTATTGTAGTCCTACGGCGGGTTGAAATAGAGCATGGTGGTTACAGGTACGTACCTA
TACTTCGTACTGAGGGGGCAAGTCTTTGCCATCGGTCGGTGGGTATGTCTGAGGAGTACTTTCGG
CTGGTGGATAGGTTTGAGGAGCCGAAGGCACCGAAGGCACCGAAGGCTCTGCCAGAGTGCCCTCC
GCAGGTTCTGTGGTGTACTCTAACCGGTCCAACGGCGAATCTGGG
Found at i:29320 original size:14 final size:14
Alignment explanation
Indices: 29285--29410 Score: 121
Period size: 14 Copynumber: 9.1 Consensus size: 14
29275 GCAGACACGA
* *
29285 TGAGCTGGGTGAAG
1 TGAGTTGGGCGAAG
29299 TGAG--GGGCGAAG
1 TGAGTTGGGCGAAG
* **
29311 TGAGCTGGGCGGGG
1 TGAGTTGGGCGAAG
* **
29325 TGAGCTAAGCGAAG
1 TGAGTTGGGCGAAG
* *
29339 TGAGTTGGTCGAAA
1 TGAGTTGGGCGAAG
*
29353 TGAGTTGGGCGAAT
1 TGAGTTGGGCGAAG
*
29367 TGAGTTGGGCGAAT
1 TGAGTTGGGCGAAG
*
29381 TGAGTTGGGCAAAG
1 TGAGTTGGGCGAAG
29395 TGAGTTGGGCGAAG
1 TGAGTTGGGCGAAG
29409 TG
1 TG
29411 TCTATTGTAG
Statistics
Matches: 93, Mismatches: 17, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
12 11 0.12
14 82 0.88
ACGTcount: A:0.23, C:0.09, G:0.47, T:0.21
Consensus pattern (14 bp):
TGAGTTGGGCGAAG
Left flanking sequence: Indices 28785 -- 29284
GAAGCGGCTAATATAAATGTCGCAAGCGAGGGCTGGGTTAAATTGGCTGCATTCGTTTCGTGGGG
TTGCGTGGGCCTCGACGAGGTCGTTCGTCAATTAAGGTTTACGAGGCATCAACGGCGGCTATGCA
CGTGACCGAGCTAGGCGAAATTAGCCCATATTTAGCCATGGCAGAAATTGTCAAAGCTTAAAGGC
TGGGGTGGCTGCAGGTTCCAGGATAGGGGTGTAAGGAACGGGTGACCAAGTGCATGACGAAAGGT
GGGTTTGAGGAACGGTTTGGGTAATGGACTAGTTGTGAGGATAACGCGATTGTAAGACTTTTTGT
AGTTGATAGTGTGTTCTTGATAGTCTGTTCTTGACAGGTTCATCGTCTCTTAGACCGCACGTCTC
TGCTAGTGACGCCCTGGACTTGCTTCTATATTTGACTGCAGTGTCGTAGTATGGGGAAGGTGATA
CGATTGACCGGATTATCGTTGATCCGAATTTCTGGGCAGACACGA
Right flanking sequence: Indices 29411 -- 29910
TCTATTGTAGTCCTACGGCGGGTTGAAATAGAGCATGGTGGTTACAGGTACGTACCTATACTTCG
TACTGAGGGGGCAAGTCTTTGCCATCGGTCGGTGGGTATGTCTGAGGAGTACTTTCGGCTGGTGG
ATAGGTTTGAGGAGCCGAAGGCACCGAAGGCACCGAAGGCTCTGCCAGAGTGCCCTCCGCAGGTT
CTGTGGTGTACTCTAACCGGTCCAACGGCGAATCTGGGACGCTTTTCGACACGTACTTCGCCTTG
GACACCCGCAACGTGCCCTGCCACACCCCGTCCACCCACAACTCGCCGTAGTAGACTTTCGGGCT
CACCCGCTCCAAGAGCGTGGGGTTGGCAAAAACCTGTTTCTCGAAAACGACCTCGGGTAACACCC
GGTCGAGGGCGTCCTGGACGTCCGCCATCGAGGTGTTTGGGGTGCGCTTGTGGAGCTCGTAGTAG
TAGGTGCCAAACTTGCCCCTTCTGGGATATTTGAGGCCCCACCCA
Found at i:29569 original size:9 final size:9
Alignment explanation
Indices: 29555--29580 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
29545 GTTTGAGGAG
29555 CCGAAGGCA
1 CCGAAGGCA
29564 CCGAAGGCA
1 CCGAAGGCA
29573 CCGAAGGC
1 CCGAAGGC
29581 TCTGCCAGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.31, C:0.35, G:0.35, T:0.00
Consensus pattern (9 bp):
CCGAAGGCA
Left flanking sequence: Indices 29055 -- 29554
AACGGTTTGGGTAATGGACTAGTTGTGAGGATAACGCGATTGTAAGACTTTTTGTAGTTGATAGT
GTGTTCTTGATAGTCTGTTCTTGACAGGTTCATCGTCTCTTAGACCGCACGTCTCTGCTAGTGAC
GCCCTGGACTTGCTTCTATATTTGACTGCAGTGTCGTAGTATGGGGAAGGTGATACGATTGACCG
GATTATCGTTGATCCGAATTTCTGGGCAGACACGATGAGCTGGGTGAAGTGAGGGGCGAAGTGAG
CTGGGCGGGGTGAGCTAAGCGAAGTGAGTTGGTCGAAATGAGTTGGGCGAATTGAGTTGGGCGAA
TTGAGTTGGGCAAAGTGAGTTGGGCGAAGTGTCTATTGTAGTCCTACGGCGGGTTGAAATAGAGC
ATGGTGGTTACAGGTACGTACCTATACTTCGTACTGAGGGGGCAAGTCTTTGCCATCGGTCGGTG
GGTATGTCTGAGGAGTACTTTCGGCTGGTGGATAGGTTTGAGGAG
Right flanking sequence: Indices 29581 -- 30080
TCTGCCAGAGTGCCCTCCGCAGGTTCTGTGGTGTACTCTAACCGGTCCAACGGCGAATCTGGGAC
GCTTTTCGACACGTACTTCGCCTTGGACACCCGCAACGTGCCCTGCCACACCCCGTCCACCCACA
ACTCGCCGTAGTAGACTTTCGGGCTCACCCGCTCCAAGAGCGTGGGGTTGGCAAAAACCTGTTTC
TCGAAAACGACCTCGGGTAACACCCGGTCGAGGGCGTCCTGGACGTCCGCCATCGAGGTGTTTGG
GGTGCGCTTGTGGAGCTCGTAGTAGTAGGTGCCAAACTTGCCCCTTCTGGGATATTTGAGGCCCC
ACCCATGGCGAGCCTGGCAGAACTGGGCTAGAGCAGACACCCCGCTGCACACGCAGAGGGCGATA
ACTATAACTAAAAACCACATTGGTTCCAGGGTGGGTCTTCGGAGCTTTTAAGTGGCGGTACGACA
TTTCCGGTACCTGATCCATTGTTCGCCAGCGCCACAATAAAAAGG
Found at i:30903 original size:15 final size:15
Alignment explanation
Indices: 30876--30946 Score: 108
Period size: 15 Copynumber: 4.8 Consensus size: 15
30866 ACCTTCCCCT
30876 TTTAACCACCCTCCC
1 TTTAACCACCCTCCC
* * *
30891 CTCAACCAGCCTCCC
1 TTTAACCACCCTCCC
30906 TTTAACCACCCTCCC
1 TTTAACCACCCTCCC
30921 TTTAACCACCCT-CC
1 TTTAACCACCCTCCC
30935 TTTAACCACCCT
1 TTTAACCACCCT
30947 GTCTCTTCAA
Statistics
Matches: 50, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
14 14 0.28
15 36 0.72
ACGTcount: A:0.21, C:0.52, G:0.01, T:0.25
Consensus pattern (15 bp):
TTTAACCACCCTCCC
Left flanking sequence: Indices 30376 -- 30875
GCGATCAAATTAAATTGGGTCTCCCGCGAGATCTCTGGCCGCAGCACTCTTCTAAGCCTCTAGAC
CGTCACTCCAAACACAAAATTGTTTCTCAATTATTCCATAGTCCAAACGTGTAAGCACCCATAGT
TAGATACCAGTTACCAGTTTGCCAACTGAGACTATCAGCTACCAGTTCGCCATCACCCCTCAGAC
AACTACGCGAGGGTATTCGAGTAACCCATGGTCTGATAACACACCCAATCAACGCCTCGTACATG
CCTCTCTACCCAAGTTAAATACAGCCAATTCCCTAGAAAACTCGGTCGACGCCAAACTATCCAAT
GCTTGCCTTCTCCATGGCCCACTTCCCATACCACTGGCGAATTACACAAAGTGTCTGTTTTATTC
TGTGTAAGTAGTCTGCGGTTTGGGTCAAATGCAGAATACTTACAACCAGGGCACTCTAGAACTAA
ACCACTGCGAGACTACCGTACAATCCAACAACCTCACCTTCCCCT
Right flanking sequence: Indices 30947 -- 31446
GTCTCTTCAAAACCTATCCCTTTTACCCCTTCAACACCCTACCCCACACCTCCTCTACCAACATC
TAGTTCACGTGTCATAGCAAACTCCTATTAACATATTGCGCTCTACTTAGTAGCTCCCACTTGGT
CAGCCCCACTAGTAGCCCTACTTGGTAAGCTCCTTGACAATCGCCGCCTTCACCTTGTCCACCAG
CGCCTCGTCAATCAAGTTGATGCGCTTCTCCTTGGTCGACAACGCCTTGAGCTCGGCCGGAAGCA
CGTCCTTCTCAAACAGGTACCCGTCAAAGCTCGAGAGCGCCATGTCCACCACCTCGGAGAACTTG
GCCGGGTGCGCGGTGGACAACGAGATGTAGTGCGCGCCCGCGCCGTCCTTCTGGAACCGCTGGGT
GGTGTGCACCCCGATGGCGGTGTGCGGGTCGATCACGTACTGGTGGTCGCCGTACACCTGCTTGA
TGGTGGCCACGGTCTCCTCGTTGGTGACCCGCGCCAGCCCAAACA
Found at i:32705 original size:27 final size:27
Alignment explanation
Indices: 32661--32722 Score: 65
Period size: 27 Copynumber: 2.3 Consensus size: 27
32651 CGGTACCGGA
32661 GGTGGGTGGGTGAAGGGGATG-GGGT-T
1 GGTGGG-GGGTGAAGGGGATGTGGGTGT
* *
32687 GAGTGGGGGGTGAGTGGGGGTGTGGGTGT
1 G-GTGGGGGGTGA-AGGGGATGTGGGTGT
32716 GGTGGGG
1 GGTGGGG
32723 TGGGGGTGGG
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
26 7 0.23
27 11 0.37
28 10 0.33
29 2 0.07
ACGTcount: A:0.08, C:0.00, G:0.69, T:0.23
Consensus pattern (27 bp):
GGTGGGGGGTGAAGGGGATGTGGGTGT
Left flanking sequence: Indices 32161 -- 32660
GCTCCCGCTGGCCGTCGGCGGCGTTCTGGTTGCGCCGGGTCAAGAAGAACTCAAAGAGGTTGCCC
ACGAACTGCAACGCCACGTCCTTGAACGCGTAGGTGGGCCCGTGGAAGAGCTCCAAGAGGTACAT
CTCAGGGGTCAACTGGCGCAACGGGGTCACGTCGGGCGAGCGAAACGTGCGGTACAGCCGGGTCA
CAAGGTCCCGCAAGTCGCTGTCGGCGATCTCCTGGGGGTCGATGTAGAGTCTCATCACCTCGAAC
GCCAACTCGGAGAACGAGAGGCTGGCCCAGGCCGCGAGGGTGTCCGCAGACACCTGGGGGATTTG
CAGCGGCAAAAACAACCCGCCGTCGCGGGCGAGGCCCTCCATCACGACGTCCTCGAACGAGAGCG
CCTGCGAGGCGTCGGTGGAACGGGTGGATCTGTATGTGGTGGACATGGTGGAGGTGAAAAATGTG
GTGATCGTTTATGAGTCAGGAGTCACGTGGGCGGCCGGTACCGGA
Right flanking sequence: Indices 32723 -- 33222
TGGGGGTGGGGAGTGTTGTTGGGGTGATTGTAGGTGTTTAGGTGTGCTTTACAGTGGTTTGATGG
GTGGGTTGGACTTGTGGGGTGACAGGTGGATGGTGTTATGTGCCCGGAAAAGAAACTCTGGGGTT
CCGAGTCATAGGGAAAAGAAAGGAAAGGGAAAGGAGGGAAAGAAGGGAAAGAAAGGGAAAAGAAA
GGGATGGGGGGGGGTGTAGCGTAGGGGTGAAACTGGTAAAACTGGGCGAAACGGGGTGAAACTGG
GTGGGTTTTGTGTCTCATGGGGATACCGCGATCTGAGTACGGTATGTGGGAGGCAACCATCGCCC
GATCAGGTGTTTTACCGTACTGGTAGGTGAGCTACTGTAACTCTAGCTTATTGAGTAGGGTACTC
GGGATTATCTTGGCTCATTATCAGAAACGTCCTTGGATTAGGGCGAGTGTACAGTCTACTCACTC
TTCTCTACAATCAGCCGCATCAACGGAAGTCCACCTAGAGTGTGG
Found at i:32886 original size:11 final size:10
Alignment explanation
Indices: 32870--32921 Score: 63
Period size: 9 Copynumber: 5.2 Consensus size: 10
32860 ATAGGGAAAA
32870 GAAAGGAAAGG
1 GAAA-GAAAGG
*
32881 GAAAG-GAGG
1 GAAAGAAAGG
32890 GAAAG-AAGG
1 GAAAGAAAGG
32899 GAAAGAAAGG
1 GAAAGAAAGG
32909 GAAAAGAAAGG
1 G-AAAGAAAGG
32920 GA
1 GA
32922 TGGGGGGGGG
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
9 16 0.43
10 7 0.19
11 14 0.38
ACGTcount: A:0.56, C:0.00, G:0.44, T:0.00
Consensus pattern (10 bp):
GAAAGAAAGG
Left flanking sequence: Indices 32370 -- 32869
TCGCTGTCGGCGATCTCCTGGGGGTCGATGTAGAGTCTCATCACCTCGAACGCCAACTCGGAGAA
CGAGAGGCTGGCCCAGGCCGCGAGGGTGTCCGCAGACACCTGGGGGATTTGCAGCGGCAAAAACA
ACCCGCCGTCGCGGGCGAGGCCCTCCATCACGACGTCCTCGAACGAGAGCGCCTGCGAGGCGTCG
GTGGAACGGGTGGATCTGTATGTGGTGGACATGGTGGAGGTGAAAAATGTGGTGATCGTTTATGA
GTCAGGAGTCACGTGGGCGGCCGGTACCGGAGGTGGGTGGGTGAAGGGGATGGGGTTGAGTGGGG
GGTGAGTGGGGGTGTGGGTGTGGTGGGGTGGGGGTGGGGAGTGTTGTTGGGGTGATTGTAGGTGT
TTAGGTGTGCTTTACAGTGGTTTGATGGGTGGGTTGGACTTGTGGGGTGACAGGTGGATGGTGTT
ATGTGCCCGGAAAAGAAACTCTGGGGTTCCGAGTCATAGGGAAAA
Right flanking sequence: Indices 32922 -- 33421
TGGGGGGGGGTGTAGCGTAGGGGTGAAACTGGTAAAACTGGGCGAAACGGGGTGAAACTGGGTGG
GTTTTGTGTCTCATGGGGATACCGCGATCTGAGTACGGTATGTGGGAGGCAACCATCGCCCGATC
AGGTGTTTTACCGTACTGGTAGGTGAGCTACTGTAACTCTAGCTTATTGAGTAGGGTACTCGGGA
TTATCTTGGCTCATTATCAGAAACGTCCTTGGATTAGGGCGAGTGTACAGTCTACTCACTCTTCT
CTACAATCAGCCGCATCAACGGAAGTCCACCTAGAGTGTGGAATGATCAGCACTGTCAACTAAGT
TTAGTGTAGATACAGCCCTGGGGAAGGAAACTGTGAGCTGATATCCGTACAAAGCCGTGTTTAAA
CGACTTTGGCTTCGCCGACGACGATACTGAAACATCCATTTTCAATCTTAGTTGGTCACGTGGTT
CCCTCTAAATAGAAGTATGTTGAACGATTGGCGCCCTGGGCGGGT
Found at i:37184 original size:12 final size:12
Alignment explanation
Indices: 37167--37209 Score: 86
Period size: 12 Copynumber: 3.6 Consensus size: 12
37157 AGGCAAAGAG
37167 GAGGGAGCCAGA
1 GAGGGAGCCAGA
37179 GAGGGAGCCAGA
1 GAGGGAGCCAGA
37191 GAGGGAGCCAGA
1 GAGGGAGCCAGA
37203 GAGGGAG
1 GAGGGAG
37210 GCAAAGAGGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.33, C:0.14, G:0.53, T:0.00
Consensus pattern (12 bp):
GAGGGAGCCAGA
Left flanking sequence: Indices 36667 -- 37166
ACCCGGTGCACCGACGCAACAAACAGGAGGTGGTGTTGGAGCGGTGGTTGGTGGAGTTTGACGCT
GGCGACGGCGACGAGGTCGAGTTGCCCCTCGTGTACAAGCAGGCCATTGTGCTTTTCCGGTGCTT
GTACGCGCTTGTCCGGCTCATGCCGTGTGCCCAGTTGGTGCGTGCCAACGCGCTCCGGGTGCACA
CCAAGGTGGTGGACGGCCGCCGCACCATCAGCTCCAAGGGGCGGATCGGGCTCTCGAAGCCGCTT
TGGGAGAGCAAAGCCGACGACCACATGGGCCACAAAGCGTTCAAGCCGGTGGCGACCCCGGTGGG
CACGCTCCGAGTGCTGGTGGCGTACCGCACCCAGGCCCGGTTTGTGTTGGAGACGACAGAGAGCG
CCAGGGCCCACGAAGACGTGCGCGAGCACACCGGCGCTGTGCGCGAAAAGAGCCTCAGTCCCACC
ACGGGTGCGGCAGAGGGAAAGAAGGTGAGTGGAATAGGCAAAGAG
Right flanking sequence: Indices 37210 -- 37709
GCAAAGAGGAGGGCAAAGAGGAAGGCAAAGAGGGAGCACATGGCGCCGACCCAAAGCAGACTGCA
AGACACGAGCACGGAGGCAAAGAGGAGGTGCGCGAGGAGGCACGCGAGGGTGCGGAGCCCAGACC
GCGGAGAGAGTCCTTCCGCCGGGAAGGCTCGGGGCCCGTGCGGAGCTCAGACGCCATCGACCGCC
GCAGCCGCGAGGGCAACCCCCACGTGATCGCGGTGGCGGGCCGCCGGGGCTCCGAGGGCCCCGAG
CTGGTCCCCATGGCGCCCCACCCCTCCCTCGGGCACGACCACCCCCACCAGCCCCACTCGGTGCT
GAACAACGCCACCAGCCAGCCCATCGCCATGCGGCTGCCCATCCAGCCGTTCCGGATCGGGAGCA
TGAGCACGTCGCCCCCGCTCGCGTCGCTGGCCACGCCGCCAGCCATGGAGCGACGGGTCCTGATC
GCCCTGAACCGGCTGAACGCGCTGTTGGCAGCGATGCTCCGCCAG
Found at i:37196 original size:24 final size:24
Alignment explanation
Indices: 37167--37246 Score: 90
Period size: 24 Copynumber: 3.3 Consensus size: 24
37157 AGGCAAAGAG
*
37167 GAGGGAGCCAGAGAGGGAGCCAGA
1 GAGGGAGCCAGAGAGGGAGCCAAA
*
37191 GAGGGAGCCAGAGAGGGAGGCAAA
1 GAGGGAGCCAGAGAGGGAGCCAAA
* * * *
37215 GA-GGAGGGCAAAGAGGAAGGCAAA
1 GAGGGA-GCCAGAGAGGGAGCCAAA
37239 GAGGGAGC
1 GAGGGAGC
37247 ACATGGCGCC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
23 3 0.06
24 42 0.88
25 3 0.06
ACGTcount: A:0.38, C:0.12, G:0.50, T:0.00
Consensus pattern (24 bp):
GAGGGAGCCAGAGAGGGAGCCAAA
Left flanking sequence: Indices 36667 -- 37166
ACCCGGTGCACCGACGCAACAAACAGGAGGTGGTGTTGGAGCGGTGGTTGGTGGAGTTTGACGCT
GGCGACGGCGACGAGGTCGAGTTGCCCCTCGTGTACAAGCAGGCCATTGTGCTTTTCCGGTGCTT
GTACGCGCTTGTCCGGCTCATGCCGTGTGCCCAGTTGGTGCGTGCCAACGCGCTCCGGGTGCACA
CCAAGGTGGTGGACGGCCGCCGCACCATCAGCTCCAAGGGGCGGATCGGGCTCTCGAAGCCGCTT
TGGGAGAGCAAAGCCGACGACCACATGGGCCACAAAGCGTTCAAGCCGGTGGCGACCCCGGTGGG
CACGCTCCGAGTGCTGGTGGCGTACCGCACCCAGGCCCGGTTTGTGTTGGAGACGACAGAGAGCG
CCAGGGCCCACGAAGACGTGCGCGAGCACACCGGCGCTGTGCGCGAAAAGAGCCTCAGTCCCACC
ACGGGTGCGGCAGAGGGAAAGAAGGTGAGTGGAATAGGCAAAGAG
Right flanking sequence: Indices 37247 -- 37746
ACATGGCGCCGACCCAAAGCAGACTGCAAGACACGAGCACGGAGGCAAAGAGGAGGTGCGCGAGG
AGGCACGCGAGGGTGCGGAGCCCAGACCGCGGAGAGAGTCCTTCCGCCGGGAAGGCTCGGGGCCC
GTGCGGAGCTCAGACGCCATCGACCGCCGCAGCCGCGAGGGCAACCCCCACGTGATCGCGGTGGC
GGGCCGCCGGGGCTCCGAGGGCCCCGAGCTGGTCCCCATGGCGCCCCACCCCTCCCTCGGGCACG
ACCACCCCCACCAGCCCCACTCGGTGCTGAACAACGCCACCAGCCAGCCCATCGCCATGCGGCTG
CCCATCCAGCCGTTCCGGATCGGGAGCATGAGCACGTCGCCCCCGCTCGCGTCGCTGGCCACGCC
GCCAGCCATGGAGCGACGGGTCCTGATCGCCCTGAACCGGCTGAACGCGCTGTTGGCAGCGATGC
TCCGCCAGCAACGCAACTCCCAGCTGCTGGCCACGCTGGGCATCC
Found at i:37217 original size:12 final size:12
Alignment explanation
Indices: 37167--37246 Score: 81
Period size: 12 Copynumber: 6.7 Consensus size: 12
37157 AGGCAAAGAG
*
37167 GAGGGAGCCAGA
1 GAGGGAGCCAAA
*
37179 GAGGGAGCCAGA
1 GAGGGAGCCAAA
*
37191 GAGGGAGCCAGA
1 GAGGGAGCCAAA
*
37203 GAGGGAGGCAAA
1 GAGGGAGCCAAA
*
37215 GA-GGAGGGCAAA
1 GAGGGA-GCCAAA
* *
37227 GAGGAAGGCAAA
1 GAGGGAGCCAAA
37239 GAGGGAGC
1 GAGGGAGC
37247 ACATGGCGCC
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
11 3 0.05
12 56 0.92
13 2 0.03
ACGTcount: A:0.38, C:0.12, G:0.50, T:0.00
Consensus pattern (12 bp):
GAGGGAGCCAAA
Left flanking sequence: Indices 36667 -- 37166
ACCCGGTGCACCGACGCAACAAACAGGAGGTGGTGTTGGAGCGGTGGTTGGTGGAGTTTGACGCT
GGCGACGGCGACGAGGTCGAGTTGCCCCTCGTGTACAAGCAGGCCATTGTGCTTTTCCGGTGCTT
GTACGCGCTTGTCCGGCTCATGCCGTGTGCCCAGTTGGTGCGTGCCAACGCGCTCCGGGTGCACA
CCAAGGTGGTGGACGGCCGCCGCACCATCAGCTCCAAGGGGCGGATCGGGCTCTCGAAGCCGCTT
TGGGAGAGCAAAGCCGACGACCACATGGGCCACAAAGCGTTCAAGCCGGTGGCGACCCCGGTGGG
CACGCTCCGAGTGCTGGTGGCGTACCGCACCCAGGCCCGGTTTGTGTTGGAGACGACAGAGAGCG
CCAGGGCCCACGAAGACGTGCGCGAGCACACCGGCGCTGTGCGCGAAAAGAGCCTCAGTCCCACC
ACGGGTGCGGCAGAGGGAAAGAAGGTGAGTGGAATAGGCAAAGAG
Right flanking sequence: Indices 37247 -- 37746
ACATGGCGCCGACCCAAAGCAGACTGCAAGACACGAGCACGGAGGCAAAGAGGAGGTGCGCGAGG
AGGCACGCGAGGGTGCGGAGCCCAGACCGCGGAGAGAGTCCTTCCGCCGGGAAGGCTCGGGGCCC
GTGCGGAGCTCAGACGCCATCGACCGCCGCAGCCGCGAGGGCAACCCCCACGTGATCGCGGTGGC
GGGCCGCCGGGGCTCCGAGGGCCCCGAGCTGGTCCCCATGGCGCCCCACCCCTCCCTCGGGCACG
ACCACCCCCACCAGCCCCACTCGGTGCTGAACAACGCCACCAGCCAGCCCATCGCCATGCGGCTG
CCCATCCAGCCGTTCCGGATCGGGAGCATGAGCACGTCGCCCCCGCTCGCGTCGCTGGCCACGCC
GCCAGCCATGGAGCGACGGGTCCTGATCGCCCTGAACCGGCTGAACGCGCTGTTGGCAGCGATGC
TCCGCCAGCAACGCAACTCCCAGCTGCTGGCCACGCTGGGCATCC
Found at i:38326 original size:9 final size:9
Alignment explanation
Indices: 38312--38337 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
38302 TGTTTGAAGA
38312 CGACGACGG
1 CGACGACGG
38321 CGACGACGG
1 CGACGACGG
38330 CGACGACG
1 CGACGACG
38338 CGGCTCTGCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.35, G:0.42, T:0.00
Consensus pattern (9 bp):
CGACGACGG
Left flanking sequence: Indices 37812 -- 38311
AACAACACCCCACGCTTCTCGCTGCTGTTTGGGCTGCGCACCCGGCGGCTCAGCAGGCCCCAGGA
CCTGTTGCTCGGCACGCTGGCCGGGCTGGCGTCGCTGACACCGGGCCTGGGGCTTTATTTGGACG
GAGACTCCGACGACATCTCGGGGTTCGTCCGGATGATCGACAGCAAGAGCGAGCTCCGGTTCGGG
GCTCCGCTGACGCTGGCCGACCCCTTGAACAAGTTCGCCTCGCTCCGTGCCCACCACGCCCAGTT
GAGCGACTCCGTCAACCTGTTGTACTCGCTGCGCAAGCTCCTGAACCACTCGCACAACTCGCACC
TGCCGCCCGGGAGCTATCCCGAGGCGTCGCAGTTTCCCCTGATCACCGCCCGGCTCGACGGGCAC
ACCGAGGAGCCCACGCCCGTTCCCCTGCCGCCCGCTGCGGCGCCAGCGCCCGTGGTGGCCGGGTT
GGCCACCACCCCGCGCCACATCCACTACGAAAACGTGTTTGAAGA
Right flanking sequence: Indices 38338 -- 38837
CGGCTCTGCAGGTCAGCAAGCGCGCGGTGAGCCGTGGCGACGACGACGACGACTTGCTTTTCACC
ATGAGCGACATGAACCTCGCACAAAGTAAAAACTAGACACTGCATTGGAATTTATAGAAATAGAG
AGATAGTTCGTGGATGCGTGGGGGGTTGGTGAACCAGGAGGTGAAGAATCAGTAAGGTATTTAAA
GGGGTATTGTGGTTTTATATAGGAAGTATTGGTTTGATATGGGGAGTATTGGTTTGATATGGGAA
GTATTGGTTTGATGTAAAAAGTATACGGTTGATAAAAGTATTTTGGTAATCTAAGGCTAGTTTGG
TGTAAATGGCTGGTGACTACAAAGCTAGCAAGAAGGTTTTTGCCTACAAATTAAGCTGTAATTAT
CATTTCTCTGTTGGCTGGTTTCGCTATTTTTTCCGGTGCTGTGGCTTGGTTCCAAGCTGACGCTT
TTACCTTTTAGGTTTGTTCCATGCATGGACGTGCAATTTACGAAG
Found at i:38567 original size:20 final size:20
Alignment explanation
Indices: 38542--38610 Score: 111
Period size: 20 Copynumber: 3.5 Consensus size: 20
38532 AGGGGTATTG
* *
38542 TGGTTTTATATAGGAAGTAT
1 TGGTTTGATATGGGAAGTAT
*
38562 TGGTTTGATATGGGGAGTAT
1 TGGTTTGATATGGGAAGTAT
38582 TGGTTTGATATGGGAAGTAT
1 TGGTTTGATATGGGAAGTAT
38602 TGGTTTGAT
1 TGGTTTGAT
38611 GTAAAAAGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.23, C:0.00, G:0.33, T:0.43
Consensus pattern (20 bp):
TGGTTTGATATGGGAAGTAT
Left flanking sequence: Indices 38042 -- 38541
CGCCTCGCTCCGTGCCCACCACGCCCAGTTGAGCGACTCCGTCAACCTGTTGTACTCGCTGCGCA
AGCTCCTGAACCACTCGCACAACTCGCACCTGCCGCCCGGGAGCTATCCCGAGGCGTCGCAGTTT
CCCCTGATCACCGCCCGGCTCGACGGGCACACCGAGGAGCCCACGCCCGTTCCCCTGCCGCCCGC
TGCGGCGCCAGCGCCCGTGGTGGCCGGGTTGGCCACCACCCCGCGCCACATCCACTACGAAAACG
TGTTTGAAGACGACGACGGCGACGACGGCGACGACGCGGCTCTGCAGGTCAGCAAGCGCGCGGTG
AGCCGTGGCGACGACGACGACGACTTGCTTTTCACCATGAGCGACATGAACCTCGCACAAAGTAA
AAACTAGACACTGCATTGGAATTTATAGAAATAGAGAGATAGTTCGTGGATGCGTGGGGGGTTGG
TGAACCAGGAGGTGAAGAATCAGTAAGGTATTTAAAGGGGTATTG
Right flanking sequence: Indices 38611 -- 39110
GTAAAAAGTATACGGTTGATAAAAGTATTTTGGTAATCTAAGGCTAGTTTGGTGTAAATGGCTGG
TGACTACAAAGCTAGCAAGAAGGTTTTTGCCTACAAATTAAGCTGTAATTATCATTTCTCTGTTG
GCTGGTTTCGCTATTTTTTCCGGTGCTGTGGCTTGGTTCCAAGCTGACGCTTTTACCTTTTAGGT
TTGTTCCATGCATGGACGTGCAATTTACGAAGCGGTGGTATTGTTATGACAATAGTGGAAAAGTA
GTGGATAGTTGTGCTGTCTAAAGAGTACAGAGTGTGCTTGTCGGAAAATGGTTTATGATTAATTT
TTCAGTAATTTCTACGGATTAATCTTTTTCGGTTGTCTGGTAATAAACATTTCGTAGGTTAGAAA
TCCAATCGTAGAAGCATATAGTGCTTCTGTCCCAATGACTCTCCAGATTCTGATCAGCGTCAAGC
GTTCACTTGCGTCTCGATGGCCGATCACCTATTTTGTAGCAATAA
Found at i:38619 original size:20 final size:20
Alignment explanation
Indices: 38542--38621 Score: 61
Period size: 20 Copynumber: 4.0 Consensus size: 20
38532 AGGGGTATTG
* **
38542 TGGTTTTATATAGGAAGTAT
1 TGGTTTGATATAAAAAGTAT
****
38562 TGGTTTGATATGGGGAGTAT
1 TGGTTTGATATAAAAAGTAT
***
38582 TGGTTTGATATGGGAAGTAT
1 TGGTTTGATATAAAAAGTAT
*
38602 TGGTTTGATGTAAAAAGTAT
1 TGGTTTGATATAAAAAGTAT
38622 ACGGTTGATA
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 52 1.00
ACGTcount: A:0.28, C:0.00, G:0.31, T:0.41
Consensus pattern (20 bp):
TGGTTTGATATAAAAAGTAT
Left flanking sequence: Indices 38042 -- 38541
CGCCTCGCTCCGTGCCCACCACGCCCAGTTGAGCGACTCCGTCAACCTGTTGTACTCGCTGCGCA
AGCTCCTGAACCACTCGCACAACTCGCACCTGCCGCCCGGGAGCTATCCCGAGGCGTCGCAGTTT
CCCCTGATCACCGCCCGGCTCGACGGGCACACCGAGGAGCCCACGCCCGTTCCCCTGCCGCCCGC
TGCGGCGCCAGCGCCCGTGGTGGCCGGGTTGGCCACCACCCCGCGCCACATCCACTACGAAAACG
TGTTTGAAGACGACGACGGCGACGACGGCGACGACGCGGCTCTGCAGGTCAGCAAGCGCGCGGTG
AGCCGTGGCGACGACGACGACGACTTGCTTTTCACCATGAGCGACATGAACCTCGCACAAAGTAA
AAACTAGACACTGCATTGGAATTTATAGAAATAGAGAGATAGTTCGTGGATGCGTGGGGGGTTGG
TGAACCAGGAGGTGAAGAATCAGTAAGGTATTTAAAGGGGTATTG
Right flanking sequence: Indices 38622 -- 39121
ACGGTTGATAAAAGTATTTTGGTAATCTAAGGCTAGTTTGGTGTAAATGGCTGGTGACTACAAAG
CTAGCAAGAAGGTTTTTGCCTACAAATTAAGCTGTAATTATCATTTCTCTGTTGGCTGGTTTCGC
TATTTTTTCCGGTGCTGTGGCTTGGTTCCAAGCTGACGCTTTTACCTTTTAGGTTTGTTCCATGC
ATGGACGTGCAATTTACGAAGCGGTGGTATTGTTATGACAATAGTGGAAAAGTAGTGGATAGTTG
TGCTGTCTAAAGAGTACAGAGTGTGCTTGTCGGAAAATGGTTTATGATTAATTTTTCAGTAATTT
CTACGGATTAATCTTTTTCGGTTGTCTGGTAATAAACATTTCGTAGGTTAGAAATCCAATCGTAG
AAGCATATAGTGCTTCTGTCCCAATGACTCTCCAGATTCTGATCAGCGTCAAGCGTTCACTTGCG
TCTCGATGGCCGATCACCTATTTTGTAGCAATAAATCATTGAATC
Found at i:38621 original size:40 final size:40
Alignment explanation
Indices: 38542--38621 Score: 97
Period size: 40 Copynumber: 2.0 Consensus size: 40
38532 AGGGGTATTG
* ****
38542 TGGTTTTATATAGGAAGTATTGGTTTGATATGGGGAGTAT
1 TGGTTTGATATAGGAAGTATTGGTTTGATATAAAAAGTAT
* *
38582 TGGTTTGATATGGGAAGTATTGGTTTGATGTAAAAAGTAT
1 TGGTTTGATATAGGAAGTATTGGTTTGATATAAAAAGTAT
38622 ACGGTTGATA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.28, C:0.00, G:0.31, T:0.41
Consensus pattern (40 bp):
TGGTTTGATATAGGAAGTATTGGTTTGATATAAAAAGTAT
Left flanking sequence: Indices 38042 -- 38541
CGCCTCGCTCCGTGCCCACCACGCCCAGTTGAGCGACTCCGTCAACCTGTTGTACTCGCTGCGCA
AGCTCCTGAACCACTCGCACAACTCGCACCTGCCGCCCGGGAGCTATCCCGAGGCGTCGCAGTTT
CCCCTGATCACCGCCCGGCTCGACGGGCACACCGAGGAGCCCACGCCCGTTCCCCTGCCGCCCGC
TGCGGCGCCAGCGCCCGTGGTGGCCGGGTTGGCCACCACCCCGCGCCACATCCACTACGAAAACG
TGTTTGAAGACGACGACGGCGACGACGGCGACGACGCGGCTCTGCAGGTCAGCAAGCGCGCGGTG
AGCCGTGGCGACGACGACGACGACTTGCTTTTCACCATGAGCGACATGAACCTCGCACAAAGTAA
AAACTAGACACTGCATTGGAATTTATAGAAATAGAGAGATAGTTCGTGGATGCGTGGGGGGTTGG
TGAACCAGGAGGTGAAGAATCAGTAAGGTATTTAAAGGGGTATTG
Right flanking sequence: Indices 38622 -- 39121
ACGGTTGATAAAAGTATTTTGGTAATCTAAGGCTAGTTTGGTGTAAATGGCTGGTGACTACAAAG
CTAGCAAGAAGGTTTTTGCCTACAAATTAAGCTGTAATTATCATTTCTCTGTTGGCTGGTTTCGC
TATTTTTTCCGGTGCTGTGGCTTGGTTCCAAGCTGACGCTTTTACCTTTTAGGTTTGTTCCATGC
ATGGACGTGCAATTTACGAAGCGGTGGTATTGTTATGACAATAGTGGAAAAGTAGTGGATAGTTG
TGCTGTCTAAAGAGTACAGAGTGTGCTTGTCGGAAAATGGTTTATGATTAATTTTTCAGTAATTT
CTACGGATTAATCTTTTTCGGTTGTCTGGTAATAAACATTTCGTAGGTTAGAAATCCAATCGTAG
AAGCATATAGTGCTTCTGTCCCAATGACTCTCCAGATTCTGATCAGCGTCAAGCGTTCACTTGCG
TCTCGATGGCCGATCACCTATTTTGTAGCAATAAATCATTGAATC
Found at i:39127 original size:12 final size:12
Alignment explanation
Indices: 39110--39148 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
39100 TGTAGCAATA
39110 AATCATTGAATC
1 AATCATTGAATC
39122 AATCATTGAATC
1 AATCATTGAATC
* *
39134 AATTATTGAACC
1 AATCATTGAATC
39146 AAT
1 AAT
39149 TGAGTTCACC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.44, C:0.15, G:0.08, T:0.33
Consensus pattern (12 bp):
AATCATTGAATC
Left flanking sequence: Indices 38610 -- 39109
TGTAAAAAGTATACGGTTGATAAAAGTATTTTGGTAATCTAAGGCTAGTTTGGTGTAAATGGCTG
GTGACTACAAAGCTAGCAAGAAGGTTTTTGCCTACAAATTAAGCTGTAATTATCATTTCTCTGTT
GGCTGGTTTCGCTATTTTTTCCGGTGCTGTGGCTTGGTTCCAAGCTGACGCTTTTACCTTTTAGG
TTTGTTCCATGCATGGACGTGCAATTTACGAAGCGGTGGTATTGTTATGACAATAGTGGAAAAGT
AGTGGATAGTTGTGCTGTCTAAAGAGTACAGAGTGTGCTTGTCGGAAAATGGTTTATGATTAATT
TTTCAGTAATTTCTACGGATTAATCTTTTTCGGTTGTCTGGTAATAAACATTTCGTAGGTTAGAA
ATCCAATCGTAGAAGCATATAGTGCTTCTGTCCCAATGACTCTCCAGATTCTGATCAGCGTCAAG
CGTTCACTTGCGTCTCGATGGCCGATCACCTATTTTGTAGCAATA
Right flanking sequence: Indices 39149 -- 39648
TGAGTTCACCTCGAAATTGGTTACCTCTCGAAATTCATACCTTCAATGTCTATTACTTAAAACTT
ACTTAAAACTCACTCAAAACTCTAACCATATCTCGAAACCCACCTGTCGATGCTTTCTCCATGTA
TGTTTCGTATCTGATGCTATAACGGCCTGAATATATGCTTGTGCCTCGAGGCAGATATCTCACTG
GTCCGTACGGCCTTAATAAGTAACTGGTGGTTTTAGCCAGCTAGCACTTCGACCAACGATCAGAC
CCCAGCCATCAGACCCGGCCATCAGACCCGGCCTTCAGACCCGTGCCTTCAGACCCGTGCCAGCC
TCGCTGTTGCAATCAACTTCTTGTGCAAGTCAGTCCTACTTTTTCAACCACTCAGGGGCAAACTC
GCCCTGCACCATCACACTACCAATATCAAAGTTCTCAATCAACAACTCCACCCCCAACCGGCCCC
CACGGGCCCCGGTAAACCTCCGGTACTCCTCACTGACACTGGCCA
Found at i:39217 original size:11 final size:11
Alignment explanation
Indices: 39201--39234 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
39191 TCAATGTCTA
39201 TTACTTAAAAC
1 TTACTTAAAAC
39212 TTACTTAAAAC
1 TTACTTAAAAC
* *
39223 TCACTCAAAAC
1 TTACTTAAAAC
39234 T
1 T
39235 CTAACCATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.44, C:0.24, G:0.00, T:0.32
Consensus pattern (11 bp):
TTACTTAAAAC
Left flanking sequence: Indices 38701 -- 39200
TTTGCCTACAAATTAAGCTGTAATTATCATTTCTCTGTTGGCTGGTTTCGCTATTTTTTCCGGTG
CTGTGGCTTGGTTCCAAGCTGACGCTTTTACCTTTTAGGTTTGTTCCATGCATGGACGTGCAATT
TACGAAGCGGTGGTATTGTTATGACAATAGTGGAAAAGTAGTGGATAGTTGTGCTGTCTAAAGAG
TACAGAGTGTGCTTGTCGGAAAATGGTTTATGATTAATTTTTCAGTAATTTCTACGGATTAATCT
TTTTCGGTTGTCTGGTAATAAACATTTCGTAGGTTAGAAATCCAATCGTAGAAGCATATAGTGCT
TCTGTCCCAATGACTCTCCAGATTCTGATCAGCGTCAAGCGTTCACTTGCGTCTCGATGGCCGAT
CACCTATTTTGTAGCAATAAATCATTGAATCAATCATTGAATCAATTATTGAACCAATTGAGTTC
ACCTCGAAATTGGTTACCTCTCGAAATTCATACCTTCAATGTCTA
Right flanking sequence: Indices 39235 -- 39734
CTAACCATATCTCGAAACCCACCTGTCGATGCTTTCTCCATGTATGTTTCGTATCTGATGCTATA
ACGGCCTGAATATATGCTTGTGCCTCGAGGCAGATATCTCACTGGTCCGTACGGCCTTAATAAGT
AACTGGTGGTTTTAGCCAGCTAGCACTTCGACCAACGATCAGACCCCAGCCATCAGACCCGGCCA
TCAGACCCGGCCTTCAGACCCGTGCCTTCAGACCCGTGCCAGCCTCGCTGTTGCAATCAACTTCT
TGTGCAAGTCAGTCCTACTTTTTCAACCACTCAGGGGCAAACTCGCCCTGCACCATCACACTACC
AATATCAAAGTTCTCAATCAACAACTCCACCCCCAACCGGCCCCCACGGGCCCCGGTAAACCTCC
GGTACTCCTCACTGACACTGGCCAAGTTCCACCCCTCCAACCGGCGCAAGCACCCGATCACGGTG
CCGGTGCGGTGCCGGCCCATGCCACAGCACACCAACACCGGGTAC
Found at i:39465 original size:14 final size:13
Alignment explanation
Indices: 39402--39470 Score: 84
Period size: 13 Copynumber: 5.1 Consensus size: 13
39392 TCGACCAACG
*
39402 ATCAGACCCCAGCC
1 ATCAGA-CCCGGCC
39416 ATCAGACCCGGCC
1 ATCAGACCCGGCC
39429 ATCAGACCCGGCC
1 ATCAGACCCGGCC
*
39442 TTCAGACCCGTGCC
1 ATCAGACCCG-GCC
*
39456 TTCAGACCCGTGCC
1 ATCAGACCCG-GCC
39470 A
1 A
39471 GCCTCGCTGT
Statistics
Matches: 51, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
13 28 0.55
14 23 0.45
ACGTcount: A:0.22, C:0.45, G:0.20, T:0.13
Consensus pattern (13 bp):
ATCAGACCCGGCC
Left flanking sequence: Indices 38902 -- 39401
GTGTGCTTGTCGGAAAATGGTTTATGATTAATTTTTCAGTAATTTCTACGGATTAATCTTTTTCG
GTTGTCTGGTAATAAACATTTCGTAGGTTAGAAATCCAATCGTAGAAGCATATAGTGCTTCTGTC
CCAATGACTCTCCAGATTCTGATCAGCGTCAAGCGTTCACTTGCGTCTCGATGGCCGATCACCTA
TTTTGTAGCAATAAATCATTGAATCAATCATTGAATCAATTATTGAACCAATTGAGTTCACCTCG
AAATTGGTTACCTCTCGAAATTCATACCTTCAATGTCTATTACTTAAAACTTACTTAAAACTCAC
TCAAAACTCTAACCATATCTCGAAACCCACCTGTCGATGCTTTCTCCATGTATGTTTCGTATCTG
ATGCTATAACGGCCTGAATATATGCTTGTGCCTCGAGGCAGATATCTCACTGGTCCGTACGGCCT
TAATAAGTAACTGGTGGTTTTAGCCAGCTAGCACTTCGACCAACG
Right flanking sequence: Indices 39471 -- 39970
GCCTCGCTGTTGCAATCAACTTCTTGTGCAAGTCAGTCCTACTTTTTCAACCACTCAGGGGCAAA
CTCGCCCTGCACCATCACACTACCAATATCAAAGTTCTCAATCAACAACTCCACCCCCAACCGGC
CCCCACGGGCCCCGGTAAACCTCCGGTACTCCTCACTGACACTGGCCAAGTTCCACCCCTCCAAC
CGGCGCAAGCACCCGATCACGGTGCCGGTGCGGTGCCGGCCCATGCCACAGCACACCAACACCGG
GTACACCCGTTTGTCACAGAGGATTTCAAGCGCCCGCTTGATGGTGGGCTCGTTGAGCGCGTCCC
AGGGGTTCATCAGGTCGGCCCCAAAGTCGTTGATGCCCAAGAACTCGATGTTGACGCCGCCCGCA
GAGCACCAGTCCAACAACTCGTCGGAGGGCTCCTCCGACGCGAGCCAGATGATGGTTTTGAGGTG
GAGCTGGGCCAAAAACGACTGGTTGATGGCCAGCGGCTGGCCCAG
Found at i:40188 original size:8 final size:7
Alignment explanation
Indices: 40171--40251 Score: 65
Period size: 8 Copynumber: 10.4 Consensus size: 7
40161 GTGGGTGGAG
40171 GGTGTGGT
1 GGTGT-GT
40179 GGTGTAGT
1 GGTGT-GT
40187 GGTGTGT
1 GGTGTGT
40194 GGTGTGT
1 GGTGTGT
*
40201 GG-GTAGAG
1 GGTGT-G-T
40209 GGTGTGT
1 GGTGTGT
40216 GGTTGTGT
1 GG-TGTGT
40224 GGTTGTGT
1 GG-TGTGT
40232 GGTTGTGTT
1 GG-TGTG-T
40241 GGTTGTGT
1 GG-TGTGT
40249 GGT
1 GGT
40252 TTTTTTTGGT
Statistics
Matches: 65, Mismatches: 3, Indels: 11
0.82 0.04 0.14
Matches are distributed among these distances:
6 2 0.03
7 15 0.23
8 38 0.58
9 10 0.15
ACGTcount: A:0.04, C:0.00, G:0.54, T:0.42
Consensus pattern (7 bp):
GGTGTGT
Left flanking sequence: Indices 39671 -- 40170
CAAGCACCCGATCACGGTGCCGGTGCGGTGCCGGCCCATGCCACAGCACACCAACACCGGGTACA
CCCGTTTGTCACAGAGGATTTCAAGCGCCCGCTTGATGGTGGGCTCGTTGAGCGCGTCCCAGGGG
TTCATCAGGTCGGCCCCAAAGTCGTTGATGCCCAAGAACTCGATGTTGACGCCGCCCGCAGAGCA
CCAGTCCAACAACTCGTCGGAGGGCTCCTCCGACGCGAGCCAGATGATGGTTTTGAGGTGGAGCT
GGGCCAAAAACGACTGGTTGATGGCCAGCGGCTGGCCCAGCCGGTAGAGCTGGCGCTCCACGGGA
CAGAAGTTGAGCGGGGGGATGATCCGCTCCTCGGGTGGCGCGCTGACTTTGCGGGGCATGGGTGT
GCTCGTGGTCGTGGACATGGAGGAGGAGGCACAGGTTTTTTCCGAGCCTCACTGGTGGGGAGAAC
GGAGCGGGTAGCGGGGACGTGGGTAGTGATGTGTGGTGGGTGGAG
Right flanking sequence: Indices 40252 -- 40751
TTTTTTTGGTTCAAGGTTGTAGGGTTGGTATGTGTGGTGTGTTGGACTTATCGGAGAAAAGAAGG
ATAGTAAGTGGGAGAGAAGGTGGGAAGAAGGTGGAGAGCAGAGAGAGCAGGGAGAGCAGAGAGAG
CAGGGAGAGCAGGGAGAGTATGGCGAGTAGGTGGGAGGGCTGGTGTGAGATAGCAGGTGAGAGGT
GATATGACTCTTTCATTTACTATGCGCTGGTTGTTTGAACCGACGACTAGTTGATTAGGATAATG
GTGGGGAATGGTTTAGGTGCGCACAAGTAACCCACGAATAGGTCACGATCAGGTCTAGGGATCTA
ACCAGGGAGGGTTCTTGCTACGTCCTGATCTCAGGGTCAGAGGCCAAGGGCCATCGGCACCGCTG
GTGTATTTCTTGTCATTCTTAGCCATTTGATTTCTTACTCAGATCAGGTACGCAATACGGTTATG
GAAGTAGGTGGGCGTGCCAATTGTCGGGAGACTCTATTCTATGGA
Found at i:40190 original size:16 final size:16
Alignment explanation
Indices: 40156--40202 Score: 55
Period size: 15 Copynumber: 3.1 Consensus size: 16
40146 GGGTAGTGAT
*
40156 GTGTGGTGGGTGGAG-G
1 GTGTGGT-GGTGTAGTG
40172 GTGTGGTGGTGTAGTG
1 GTGTGGTGGTGTAGTG
40188 GTGT-GTGGTGT-GTG
1 GTGTGGTGGTGTAGTG
40202 G
1 G
40203 GTAGAGGGTG
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
14 4 0.14
15 13 0.45
16 12 0.41
ACGTcount: A:0.04, C:0.00, G:0.62, T:0.34
Consensus pattern (16 bp):
GTGTGGTGGTGTAGTG
Left flanking sequence: Indices 39656 -- 40155
CCCCTCCAACCGGCGCAAGCACCCGATCACGGTGCCGGTGCGGTGCCGGCCCATGCCACAGCACA
CCAACACCGGGTACACCCGTTTGTCACAGAGGATTTCAAGCGCCCGCTTGATGGTGGGCTCGTTG
AGCGCGTCCCAGGGGTTCATCAGGTCGGCCCCAAAGTCGTTGATGCCCAAGAACTCGATGTTGAC
GCCGCCCGCAGAGCACCAGTCCAACAACTCGTCGGAGGGCTCCTCCGACGCGAGCCAGATGATGG
TTTTGAGGTGGAGCTGGGCCAAAAACGACTGGTTGATGGCCAGCGGCTGGCCCAGCCGGTAGAGC
TGGCGCTCCACGGGACAGAAGTTGAGCGGGGGGATGATCCGCTCCTCGGGTGGCGCGCTGACTTT
GCGGGGCATGGGTGTGCTCGTGGTCGTGGACATGGAGGAGGAGGCACAGGTTTTTTCCGAGCCTC
ACTGGTGGGGAGAACGGAGCGGGTAGCGGGGACGTGGGTAGTGAT
Right flanking sequence: Indices 40203 -- 40702
GTAGAGGGTGTGTGGTTGTGTGGTTGTGTGGTTGTGTTGGTTGTGTGGTTTTTTTTGGTTCAAGG
TTGTAGGGTTGGTATGTGTGGTGTGTTGGACTTATCGGAGAAAAGAAGGATAGTAAGTGGGAGAG
AAGGTGGGAAGAAGGTGGAGAGCAGAGAGAGCAGGGAGAGCAGAGAGAGCAGGGAGAGCAGGGAG
AGTATGGCGAGTAGGTGGGAGGGCTGGTGTGAGATAGCAGGTGAGAGGTGATATGACTCTTTCAT
TTACTATGCGCTGGTTGTTTGAACCGACGACTAGTTGATTAGGATAATGGTGGGGAATGGTTTAG
GTGCGCACAAGTAACCCACGAATAGGTCACGATCAGGTCTAGGGATCTAACCAGGGAGGGTTCTT
GCTACGTCCTGATCTCAGGGTCAGAGGCCAAGGGCCATCGGCACCGCTGGTGTATTTCTTGTCAT
TCTTAGCCATTTGATTTCTTACTCAGATCAGGTACGCAATACGGT
Found at i:40212 original size:38 final size:38
Alignment explanation
Indices: 40156--40239 Score: 109
Period size: 38 Copynumber: 2.2 Consensus size: 38
40146 GGGTAGTGAT
*
40156 GTGTGGTGGGTGGAGGGTGTGGTGG-TGTAGTGG-TGTGTG
1 GTGT-GTGGGTAGAGGGTGT-GTGGTTGT-GTGGTTGTGTG
40195 GTGTGTGGGTAGAGGGTGTGTGGTTGTGTGGTTGTGTG
1 GTGTGTGGGTAGAGGGTGTGTGGTTGTGTGGTTGTGTG
40233 GTTGTGT
1 G-TGTGT
40240 TGGTTGTGTG
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
37 8 0.20
38 24 0.59
39 9 0.22
ACGTcount: A:0.05, C:0.00, G:0.57, T:0.38
Consensus pattern (38 bp):
GTGTGTGGGTAGAGGGTGTGTGGTTGTGTGGTTGTGTG
Left flanking sequence: Indices 39656 -- 40155
CCCCTCCAACCGGCGCAAGCACCCGATCACGGTGCCGGTGCGGTGCCGGCCCATGCCACAGCACA
CCAACACCGGGTACACCCGTTTGTCACAGAGGATTTCAAGCGCCCGCTTGATGGTGGGCTCGTTG
AGCGCGTCCCAGGGGTTCATCAGGTCGGCCCCAAAGTCGTTGATGCCCAAGAACTCGATGTTGAC
GCCGCCCGCAGAGCACCAGTCCAACAACTCGTCGGAGGGCTCCTCCGACGCGAGCCAGATGATGG
TTTTGAGGTGGAGCTGGGCCAAAAACGACTGGTTGATGGCCAGCGGCTGGCCCAGCCGGTAGAGC
TGGCGCTCCACGGGACAGAAGTTGAGCGGGGGGATGATCCGCTCCTCGGGTGGCGCGCTGACTTT
GCGGGGCATGGGTGTGCTCGTGGTCGTGGACATGGAGGAGGAGGCACAGGTTTTTTCCGAGCCTC
ACTGGTGGGGAGAACGGAGCGGGTAGCGGGGACGTGGGTAGTGAT
Right flanking sequence: Indices 40240 -- 40739
TGGTTGTGTGGTTTTTTTTGGTTCAAGGTTGTAGGGTTGGTATGTGTGGTGTGTTGGACTTATCG
GAGAAAAGAAGGATAGTAAGTGGGAGAGAAGGTGGGAAGAAGGTGGAGAGCAGAGAGAGCAGGGA
GAGCAGAGAGAGCAGGGAGAGCAGGGAGAGTATGGCGAGTAGGTGGGAGGGCTGGTGTGAGATAG
CAGGTGAGAGGTGATATGACTCTTTCATTTACTATGCGCTGGTTGTTTGAACCGACGACTAGTTG
ATTAGGATAATGGTGGGGAATGGTTTAGGTGCGCACAAGTAACCCACGAATAGGTCACGATCAGG
TCTAGGGATCTAACCAGGGAGGGTTCTTGCTACGTCCTGATCTCAGGGTCAGAGGCCAAGGGCCA
TCGGCACCGCTGGTGTATTTCTTGTCATTCTTAGCCATTTGATTTCTTACTCAGATCAGGTACGC
AATACGGTTATGGAAGTAGGTGGGCGTGCCAATTGTCGGGAGACT
Found at i:40252 original size:8 final size:8
Alignment explanation
Indices: 40211--40252 Score: 75
Period size: 8 Copynumber: 5.1 Consensus size: 8
40201 GGGTAGAGGG
40211 TGTGTGGT
1 TGTGTGGT
40219 TGTGTGGT
1 TGTGTGGT
40227 TGTGTGGT
1 TGTGTGGT
40235 TGTGTTGGT
1 TGTG-TGGT
40244 TGTGTGGT
1 TGTGTGGT
40252 T
1 T
40253 TTTTTTGGTT
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
8 25 0.76
9 8 0.24
ACGTcount: A:0.00, C:0.00, G:0.48, T:0.52
Consensus pattern (8 bp):
TGTGTGGT
Left flanking sequence: Indices 39711 -- 40210
CCACAGCACACCAACACCGGGTACACCCGTTTGTCACAGAGGATTTCAAGCGCCCGCTTGATGGT
GGGCTCGTTGAGCGCGTCCCAGGGGTTCATCAGGTCGGCCCCAAAGTCGTTGATGCCCAAGAACT
CGATGTTGACGCCGCCCGCAGAGCACCAGTCCAACAACTCGTCGGAGGGCTCCTCCGACGCGAGC
CAGATGATGGTTTTGAGGTGGAGCTGGGCCAAAAACGACTGGTTGATGGCCAGCGGCTGGCCCAG
CCGGTAGAGCTGGCGCTCCACGGGACAGAAGTTGAGCGGGGGGATGATCCGCTCCTCGGGTGGCG
CGCTGACTTTGCGGGGCATGGGTGTGCTCGTGGTCGTGGACATGGAGGAGGAGGCACAGGTTTTT
TCCGAGCCTCACTGGTGGGGAGAACGGAGCGGGTAGCGGGGACGTGGGTAGTGATGTGTGGTGGG
TGGAGGGTGTGGTGGTGTAGTGGTGTGTGGTGTGTGGGTAGAGGG
Right flanking sequence: Indices 40253 -- 40752
TTTTTTGGTTCAAGGTTGTAGGGTTGGTATGTGTGGTGTGTTGGACTTATCGGAGAAAAGAAGGA
TAGTAAGTGGGAGAGAAGGTGGGAAGAAGGTGGAGAGCAGAGAGAGCAGGGAGAGCAGAGAGAGC
AGGGAGAGCAGGGAGAGTATGGCGAGTAGGTGGGAGGGCTGGTGTGAGATAGCAGGTGAGAGGTG
ATATGACTCTTTCATTTACTATGCGCTGGTTGTTTGAACCGACGACTAGTTGATTAGGATAATGG
TGGGGAATGGTTTAGGTGCGCACAAGTAACCCACGAATAGGTCACGATCAGGTCTAGGGATCTAA
CCAGGGAGGGTTCTTGCTACGTCCTGATCTCAGGGTCAGAGGCCAAGGGCCATCGGCACCGCTGG
TGTATTTCTTGTCATTCTTAGCCATTTGATTTCTTACTCAGATCAGGTACGCAATACGGTTATGG
AAGTAGGTGGGCGTGCCAATTGTCGGGAGACTCTATTCTATGGAG
Found at i:40364 original size:9 final size:9
Alignment explanation
Indices: 40349--40399 Score: 84
Period size: 9 Copynumber: 5.7 Consensus size: 9
40339 GGAAGAAGGT
40349 GGAGAGCAG
1 GGAGAGCAG
*
40358 AGAGAGCAG
1 GGAGAGCAG
40367 GGAGAGCAG
1 GGAGAGCAG
*
40376 AGAGAGCAG
1 GGAGAGCAG
40385 GGAGAGCAG
1 GGAGAGCAG
40394 GGAGAG
1 GGAGAG
40400 TATGGCGAGT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 38 1.00
ACGTcount: A:0.37, C:0.10, G:0.53, T:0.00
Consensus pattern (9 bp):
GGAGAGCAG
Left flanking sequence: Indices 39849 -- 40348
ACGCCGCCCGCAGAGCACCAGTCCAACAACTCGTCGGAGGGCTCCTCCGACGCGAGCCAGATGAT
GGTTTTGAGGTGGAGCTGGGCCAAAAACGACTGGTTGATGGCCAGCGGCTGGCCCAGCCGGTAGA
GCTGGCGCTCCACGGGACAGAAGTTGAGCGGGGGGATGATCCGCTCCTCGGGTGGCGCGCTGACT
TTGCGGGGCATGGGTGTGCTCGTGGTCGTGGACATGGAGGAGGAGGCACAGGTTTTTTCCGAGCC
TCACTGGTGGGGAGAACGGAGCGGGTAGCGGGGACGTGGGTAGTGATGTGTGGTGGGTGGAGGGT
GTGGTGGTGTAGTGGTGTGTGGTGTGTGGGTAGAGGGTGTGTGGTTGTGTGGTTGTGTGGTTGTG
TTGGTTGTGTGGTTTTTTTTGGTTCAAGGTTGTAGGGTTGGTATGTGTGGTGTGTTGGACTTATC
GGAGAAAAGAAGGATAGTAAGTGGGAGAGAAGGTGGGAAGAAGGT
Right flanking sequence: Indices 40400 -- 40899
TATGGCGAGTAGGTGGGAGGGCTGGTGTGAGATAGCAGGTGAGAGGTGATATGACTCTTTCATTT
ACTATGCGCTGGTTGTTTGAACCGACGACTAGTTGATTAGGATAATGGTGGGGAATGGTTTAGGT
GCGCACAAGTAACCCACGAATAGGTCACGATCAGGTCTAGGGATCTAACCAGGGAGGGTTCTTGC
TACGTCCTGATCTCAGGGTCAGAGGCCAAGGGCCATCGGCACCGCTGGTGTATTTCTTGTCATTC
TTAGCCATTTGATTTCTTACTCAGATCAGGTACGCAATACGGTTATGGAAGTAGGTGGGCGTGCC
AATTGTCGGGAGACTCTATTCTATGGAGTGTAAGAATATCCCGGATGTAGTTCGTGTAGCCTACT
AAGTTTTACATTTCTAACTACTTCATAGTTAAGTGGCTACCGGATTGGGTTAGATGCATAACCGG
GTATATGGGTGCCAACATTCCACATAGACGTTCGGTTGGTTAATT
Found at i:40372 original size:18 final size:18
Alignment explanation
Indices: 40349--40399 Score: 93
Period size: 18 Copynumber: 2.8 Consensus size: 18
40339 GGAAGAAGGT
40349 GGAGAGCAGAGAGAGCAG
1 GGAGAGCAGAGAGAGCAG
40367 GGAGAGCAGAGAGAGCAG
1 GGAGAGCAGAGAGAGCAG
*
40385 GGAGAGCAGGGAGAG
1 GGAGAGCAGAGAGAG
40400 TATGGCGAGT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.37, C:0.10, G:0.53, T:0.00
Consensus pattern (18 bp):
GGAGAGCAGAGAGAGCAG
Left flanking sequence: Indices 39849 -- 40348
ACGCCGCCCGCAGAGCACCAGTCCAACAACTCGTCGGAGGGCTCCTCCGACGCGAGCCAGATGAT
GGTTTTGAGGTGGAGCTGGGCCAAAAACGACTGGTTGATGGCCAGCGGCTGGCCCAGCCGGTAGA
GCTGGCGCTCCACGGGACAGAAGTTGAGCGGGGGGATGATCCGCTCCTCGGGTGGCGCGCTGACT
TTGCGGGGCATGGGTGTGCTCGTGGTCGTGGACATGGAGGAGGAGGCACAGGTTTTTTCCGAGCC
TCACTGGTGGGGAGAACGGAGCGGGTAGCGGGGACGTGGGTAGTGATGTGTGGTGGGTGGAGGGT
GTGGTGGTGTAGTGGTGTGTGGTGTGTGGGTAGAGGGTGTGTGGTTGTGTGGTTGTGTGGTTGTG
TTGGTTGTGTGGTTTTTTTTGGTTCAAGGTTGTAGGGTTGGTATGTGTGGTGTGTTGGACTTATC
GGAGAAAAGAAGGATAGTAAGTGGGAGAGAAGGTGGGAAGAAGGT
Right flanking sequence: Indices 40400 -- 40899
TATGGCGAGTAGGTGGGAGGGCTGGTGTGAGATAGCAGGTGAGAGGTGATATGACTCTTTCATTT
ACTATGCGCTGGTTGTTTGAACCGACGACTAGTTGATTAGGATAATGGTGGGGAATGGTTTAGGT
GCGCACAAGTAACCCACGAATAGGTCACGATCAGGTCTAGGGATCTAACCAGGGAGGGTTCTTGC
TACGTCCTGATCTCAGGGTCAGAGGCCAAGGGCCATCGGCACCGCTGGTGTATTTCTTGTCATTC
TTAGCCATTTGATTTCTTACTCAGATCAGGTACGCAATACGGTTATGGAAGTAGGTGGGCGTGCC
AATTGTCGGGAGACTCTATTCTATGGAGTGTAAGAATATCCCGGATGTAGTTCGTGTAGCCTACT
AAGTTTTACATTTCTAACTACTTCATAGTTAAGTGGCTACCGGATTGGGTTAGATGCATAACCGG
GTATATGGGTGCCAACATTCCACATAGACGTTCGGTTGGTTAATT
Found at i:41093 original size:16 final size:15
Alignment explanation
Indices: 41041--41096 Score: 69
Period size: 16 Copynumber: 3.6 Consensus size: 15
41031 ACACTTCATC
41041 TCTTGGTTAACCAA-
1 TCTTGGTTAACCAAT
41055 TCTTCTGGTTAACCAAT
1 TC-T-TGGTTAACCAAT
*
41072 TCTTGGTTAATCAAT
1 TCTTGGTTAACCAAT
41087 ATCTTGGTTA
1 -TCTTGGTTA
41097 TTGTTAGGTG
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
14 2 0.05
15 12 0.32
16 21 0.57
17 2 0.05
ACGTcount: A:0.25, C:0.18, G:0.14, T:0.43
Consensus pattern (15 bp):
TCTTGGTTAACCAAT
Left flanking sequence: Indices 40541 -- 41040
ACCCACGAATAGGTCACGATCAGGTCTAGGGATCTAACCAGGGAGGGTTCTTGCTACGTCCTGAT
CTCAGGGTCAGAGGCCAAGGGCCATCGGCACCGCTGGTGTATTTCTTGTCATTCTTAGCCATTTG
ATTTCTTACTCAGATCAGGTACGCAATACGGTTATGGAAGTAGGTGGGCGTGCCAATTGTCGGGA
GACTCTATTCTATGGAGTGTAAGAATATCCCGGATGTAGTTCGTGTAGCCTACTAAGTTTTACAT
TTCTAACTACTTCATAGTTAAGTGGCTACCGGATTGGGTTAGATGCATAACCGGGTATATGGGTG
CCAACATTCCACATAGACGTTCGGTTGGTTAATTGTAGTAACCTTGTTTCACCTGGTTCACGGTC
ATCGGGCACGTCAGAACTCTGAGCCGTACACTTTTACGCTACTAGGTGTATCTTTCACAACGTGC
CTAGGCTTCCGTCTAACACGCTCTAACACACTCTAACACTTCATC
Right flanking sequence: Indices 41097 -- 41596
TTGTTAGGTGATCCGCTACATCCTCTACTACTCTCCCTACAACATCACCACCCCTAGCCTCCGTG
ACTCGGTTACGAGCTTCTGGTTCGCTTATTTGACAGGTGATGTCAAGAGCTTCCCTGATCCGCTT
CCCCCTGACCTGATCCGCTTCCTCCCCTGGCTATTCTAGCTTTCATACATTGTCATACTTCGTAA
TACTGAAACACCGGGTCGTTAGAATCGTCCTCGGGCGGAGTGACGGTGGTGTCGCGGGTGTTGTC
CTTCATCGGTGTCTGGTCAACTTGGCTGGTAGCTTGTTCGTGGATGTAGCGTCAAAACAAGGCAA
TGGCTCGTGGTTCTGCTGGCCGTGGCCTCCTTATATCCTTCCCGGGGTGTCTCCCGGGAGTACCC
CGCATTTCACACAATCGCCAGAAAGCAATAACGGTGGGGTGAAGTGGTCCCACTGGTAGAGCAAC
GTGACGGAGCGTACTGTGATTCGATGGAGATACGGTGGCTGCGCA
Found at i:41755 original size:26 final size:26
Alignment explanation
Indices: 41726--41778 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
41716 GTGACAAATC
*
41726 TATGGTGACAAATCTATGACGACCAA
1 TATGGCGACAAATCTATGACGACCAA
* * *
41752 TATGGCGACCAATCTGTGGCGACCAA
1 TATGGCGACAAATCTATGACGACCAA
41778 T
1 T
41779 CTATATGGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.23
Consensus pattern (26 bp):
TATGGCGACAAATCTATGACGACCAA
Left flanking sequence: Indices 41226 -- 41725
TCCCCCTGACCTGATCCGCTTCCTCCCCTGGCTATTCTAGCTTTCATACATTGTCATACTTCGTA
ATACTGAAACACCGGGTCGTTAGAATCGTCCTCGGGCGGAGTGACGGTGGTGTCGCGGGTGTTGT
CCTTCATCGGTGTCTGGTCAACTTGGCTGGTAGCTTGTTCGTGGATGTAGCGTCAAAACAAGGCA
ATGGCTCGTGGTTCTGCTGGCCGTGGCCTCCTTATATCCTTCCCGGGGTGTCTCCCGGGAGTACC
CCGCATTTCACACAATCGCCAGAAAGCAATAACGGTGGGGTGAAGTGGTCCCACTGGTAGAGCAA
CGTGACGGAGCGTACTGTGATTCGATGGAGATACGGTGGCTGCGCAGTGGGGTGGTTATTGGGCT
ACTTGGCAAGTGACCAAAAGGACTTGTGTCGGAAGATACTTAGAGAAGAGGCTCAAATGCCTGCT
ACATGGCCAGACCAATTTGTATGGACCAATCTATGGTGACAAATC
Right flanking sequence: Indices 41779 -- 42278
CTATATGGCTCTCGAGACTTTCAAGCCTCCTCGAGACACCAGAGTTTCTTTTGGCGGGCCTTCCC
GACTGGCACGGACAAGGCCCCTTTTATACATGTCGCACCGATAAGGACTCGATAAGGCAAGGGAG
CAAAAGAAAGGTGGGGAATCACCTGGGAGTGAAGATGAAGGGGATGTGTTGGTTTGTGAAAGTGG
CTCCACTCGTGGTGGTGGTAACATGGTACCCCTTGTGGCCACCAATTACTAAGTTCTCCCAAATC
TAAGCAAGCACTGTGGATCTGTAGCACGGGACGAAGGTCTAGAACAATGCCTGGTGCCAGCGGTC
CACTGATGCAGATTTACGTTGCCTAAAGTTCTTGGTTCACCGAATTGCGAGGCTGACCACCCCCT
ATGTAATCAGCCGCCGTGAGGGGCTGGGATGCTCCAATCTTGTGAAGGGGGAAATGAGTGGTTAA
GATCGGAGATAGCAGAGACGAAATCAGACTGAGAAAAACTAATAC
Found at i:41773 original size:14 final size:14
Alignment explanation
Indices: 41704--41782 Score: 90
Period size: 14 Copynumber: 5.8 Consensus size: 14
41694 AATTTGTATG
*
41704 GACCAATCTATGGT
1 GACCAATCTATGGC
* *
41718 GACAAATCTATGGT
1 GACCAATCTATGGC
* *
41732 GACAAATCTATGAC
1 GACCAATCTATGGC
41746 GACCAA--TATGGC
1 GACCAATCTATGGC
*
41758 GACCAATCTGTGGC
1 GACCAATCTATGGC
41772 GACCAATCTAT
1 GACCAATCTAT
41783 ATGGCTCTCG
Statistics
Matches: 56, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
12 11 0.20
14 45 0.80
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.24
Consensus pattern (14 bp):
GACCAATCTATGGC
Left flanking sequence: Indices 41204 -- 41703
TCAAGAGCTTCCCTGATCCGCTTCCCCCTGACCTGATCCGCTTCCTCCCCTGGCTATTCTAGCTT
TCATACATTGTCATACTTCGTAATACTGAAACACCGGGTCGTTAGAATCGTCCTCGGGCGGAGTG
ACGGTGGTGTCGCGGGTGTTGTCCTTCATCGGTGTCTGGTCAACTTGGCTGGTAGCTTGTTCGTG
GATGTAGCGTCAAAACAAGGCAATGGCTCGTGGTTCTGCTGGCCGTGGCCTCCTTATATCCTTCC
CGGGGTGTCTCCCGGGAGTACCCCGCATTTCACACAATCGCCAGAAAGCAATAACGGTGGGGTGA
AGTGGTCCCACTGGTAGAGCAACGTGACGGAGCGTACTGTGATTCGATGGAGATACGGTGGCTGC
GCAGTGGGGTGGTTATTGGGCTACTTGGCAAGTGACCAAAAGGACTTGTGTCGGAAGATACTTAG
AGAAGAGGCTCAAATGCCTGCTACATGGCCAGACCAATTTGTATG
Right flanking sequence: Indices 41783 -- 42282
ATGGCTCTCGAGACTTTCAAGCCTCCTCGAGACACCAGAGTTTCTTTTGGCGGGCCTTCCCGACT
GGCACGGACAAGGCCCCTTTTATACATGTCGCACCGATAAGGACTCGATAAGGCAAGGGAGCAAA
AGAAAGGTGGGGAATCACCTGGGAGTGAAGATGAAGGGGATGTGTTGGTTTGTGAAAGTGGCTCC
ACTCGTGGTGGTGGTAACATGGTACCCCTTGTGGCCACCAATTACTAAGTTCTCCCAAATCTAAG
CAAGCACTGTGGATCTGTAGCACGGGACGAAGGTCTAGAACAATGCCTGGTGCCAGCGGTCCACT
GATGCAGATTTACGTTGCCTAAAGTTCTTGGTTCACCGAATTGCGAGGCTGACCACCCCCTATGT
AATCAGCCGCCGTGAGGGGCTGGGATGCTCCAATCTTGTGAAGGGGGAAATGAGTGGTTAAGATC
GGAGATAGCAGAGACGAAATCAGACTGAGAAAAACTAATACAGAA
Found at i:42566 original size:16 final size:17
Alignment explanation
Indices: 42545--42576 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
42535 AATTGCTTCC
42545 TTCCTCCCC-TCCTCCT
1 TTCCTCCCCTTCCTCCT
42561 TTCCTCCCCTTCCTCC
1 TTCCTCCCCTTCCTCC
42577 CCCTCCTCCT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38
Consensus pattern (17 bp):
TTCCTCCCCTTCCTCCT
Left flanking sequence: Indices 42045 -- 42544
AGCACTGTGGATCTGTAGCACGGGACGAAGGTCTAGAACAATGCCTGGTGCCAGCGGTCCACTGA
TGCAGATTTACGTTGCCTAAAGTTCTTGGTTCACCGAATTGCGAGGCTGACCACCCCCTATGTAA
TCAGCCGCCGTGAGGGGCTGGGATGCTCCAATCTTGTGAAGGGGGAAATGAGTGGTTAAGATCGG
AGATAGCAGAGACGAAATCAGACTGAGAAAAACTAATACAGAAAAATTAGTAGAGAAAATCTAGA
GAACACCTTATAGAGATGAAGATCAAATAAAGATGGGGATACGCCCATAAATACTTTATAAGTTT
ATGGGCCCCATGCTAACCCCTCACTGATTTGATCTACCGTCGTACTTGCTTCGATCTAATTTTCC
TATCTGTATGAACTACGCACCCAGACCACACAATACATTTCTCTGCCCATTCTCACTACCAATCT
CACTAACCAGTCTCCATTGACTATCTTCCCATTGCAATTGCTTCC
Right flanking sequence: Indices 42577 -- 43076
CCCTCCTCCTCTTTGCTCCTCTTCCTCCTCCCACTCAAGTGCGGCGCATCGCATCAACAAAAAAC
ACACCACTACCACATCGATGTTTGGCGCTACTCCTGGAGCCAACAAGGGGTTCTCCTTTGGCGGC
GGCTCTTCCAACACCGCCAGCTCCGGTGGCAACCTCTTCGGTGGCGCGTCCAACTCCACAGCGCC
CGCGTCGGGTGGGCTTTTCGGCAACAACAACTCCTCGAACGCCTCCTCGGGAGGAGGCCTCTTTG
GCAACAACACCTCCGGCACCTCCAATGCCTCCTCCGGAGGAGGCCTCTTTGGCAGCAACAACAAC
ACCACCAATGCCTCGAGCACCACCCAGTCCGGGGGCCTCTTTGGCAACAACAATAACACCCTGGG
CGGGTTTGGCGCCAACACCAGCAAACCTGGCCTTTTTGGTGGCGCCTCCAACACCACCACCAACG
CTGCTCCCGCTCTGGGTGGGCTCTTTGGCAACAACGCTGCCAAGC
Found at i:42600 original size:28 final size:26
Alignment explanation
Indices: 42543--42604 Score: 81
Period size: 28 Copynumber: 2.3 Consensus size: 26
42533 GCAATTGCTT
42543 CCTTCCT-CCCCTCCTCCTTTCCTCC
1 CCTTCCTCCCCCTCCTCCTTTCCTCC
*
42568 CCTTCCTCCCCCTCCTCCTCTTTGCTCC
1 CCTTCCTCCCCCTCCT-C-CTTTCCTCC
*
42596 TCTTCCTCC
1 CCTTCCTCC
42605 TCCCACTCAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
25 7 0.22
26 8 0.25
27 1 0.03
28 16 0.50
ACGTcount: A:0.00, C:0.61, G:0.02, T:0.37
Consensus pattern (26 bp):
CCTTCCTCCCCCTCCTCCTTTCCTCC
Left flanking sequence: Indices 42043 -- 42542
CAAGCACTGTGGATCTGTAGCACGGGACGAAGGTCTAGAACAATGCCTGGTGCCAGCGGTCCACT
GATGCAGATTTACGTTGCCTAAAGTTCTTGGTTCACCGAATTGCGAGGCTGACCACCCCCTATGT
AATCAGCCGCCGTGAGGGGCTGGGATGCTCCAATCTTGTGAAGGGGGAAATGAGTGGTTAAGATC
GGAGATAGCAGAGACGAAATCAGACTGAGAAAAACTAATACAGAAAAATTAGTAGAGAAAATCTA
GAGAACACCTTATAGAGATGAAGATCAAATAAAGATGGGGATACGCCCATAAATACTTTATAAGT
TTATGGGCCCCATGCTAACCCCTCACTGATTTGATCTACCGTCGTACTTGCTTCGATCTAATTTT
CCTATCTGTATGAACTACGCACCCAGACCACACAATACATTTCTCTGCCCATTCTCACTACCAAT
CTCACTAACCAGTCTCCATTGACTATCTTCCCATTGCAATTGCTT
Right flanking sequence: Indices 42605 -- 43104
TCCCACTCAAGTGCGGCGCATCGCATCAACAAAAAACACACCACTACCACATCGATGTTTGGCGC
TACTCCTGGAGCCAACAAGGGGTTCTCCTTTGGCGGCGGCTCTTCCAACACCGCCAGCTCCGGTG
GCAACCTCTTCGGTGGCGCGTCCAACTCCACAGCGCCCGCGTCGGGTGGGCTTTTCGGCAACAAC
AACTCCTCGAACGCCTCCTCGGGAGGAGGCCTCTTTGGCAACAACACCTCCGGCACCTCCAATGC
CTCCTCCGGAGGAGGCCTCTTTGGCAGCAACAACAACACCACCAATGCCTCGAGCACCACCCAGT
CCGGGGGCCTCTTTGGCAACAACAATAACACCCTGGGCGGGTTTGGCGCCAACACCAGCAAACCT
GGCCTTTTTGGTGGCGCCTCCAACACCACCACCAACGCTGCTCCCGCTCTGGGTGGGCTCTTTGG
CAACAACGCTGCCAAGCCCGCCACCACCGGGTTCGGTGCCTCCTC
Found at i:42606 original size:9 final size:9
Alignment explanation
Indices: 42544--42606 Score: 58
Period size: 9 Copynumber: 7.1 Consensus size: 9
42534 CAATTGCTTC
42544 CTTCCTCC-
1 CTTCCTCCT
*
42552 CCTCCTCCT
1 CTTCCTCCT
*
42561 -TTCCTCCC
1 CTTCCTCCT
*
42569 CTTCCTCCC
1 CTTCCTCCT
*
42578 CCTCCTCCT
1 CTTCCTCCT
*
42587 CTTTGCTCCT
1 C-TTCCTCCT
42597 CTTCCTCCT
1 CTTCCTCCT
42606 C
1 C
42607 CCACTCAAGT
Statistics
Matches: 44, Mismatches: 8, Indels: 5
0.77 0.14 0.09
Matches are distributed among these distances:
8 13 0.30
9 24 0.55
10 7 0.16
ACGTcount: A:0.00, C:0.60, G:0.02, T:0.38
Consensus pattern (9 bp):
CTTCCTCCT
Left flanking sequence: Indices 42044 -- 42543
AAGCACTGTGGATCTGTAGCACGGGACGAAGGTCTAGAACAATGCCTGGTGCCAGCGGTCCACTG
ATGCAGATTTACGTTGCCTAAAGTTCTTGGTTCACCGAATTGCGAGGCTGACCACCCCCTATGTA
ATCAGCCGCCGTGAGGGGCTGGGATGCTCCAATCTTGTGAAGGGGGAAATGAGTGGTTAAGATCG
GAGATAGCAGAGACGAAATCAGACTGAGAAAAACTAATACAGAAAAATTAGTAGAGAAAATCTAG
AGAACACCTTATAGAGATGAAGATCAAATAAAGATGGGGATACGCCCATAAATACTTTATAAGTT
TATGGGCCCCATGCTAACCCCTCACTGATTTGATCTACCGTCGTACTTGCTTCGATCTAATTTTC
CTATCTGTATGAACTACGCACCCAGACCACACAATACATTTCTCTGCCCATTCTCACTACCAATC
TCACTAACCAGTCTCCATTGACTATCTTCCCATTGCAATTGCTTC
Right flanking sequence: Indices 42607 -- 43106
CCACTCAAGTGCGGCGCATCGCATCAACAAAAAACACACCACTACCACATCGATGTTTGGCGCTA
CTCCTGGAGCCAACAAGGGGTTCTCCTTTGGCGGCGGCTCTTCCAACACCGCCAGCTCCGGTGGC
AACCTCTTCGGTGGCGCGTCCAACTCCACAGCGCCCGCGTCGGGTGGGCTTTTCGGCAACAACAA
CTCCTCGAACGCCTCCTCGGGAGGAGGCCTCTTTGGCAACAACACCTCCGGCACCTCCAATGCCT
CCTCCGGAGGAGGCCTCTTTGGCAGCAACAACAACACCACCAATGCCTCGAGCACCACCCAGTCC
GGGGGCCTCTTTGGCAACAACAATAACACCCTGGGCGGGTTTGGCGCCAACACCAGCAAACCTGG
CCTTTTTGGTGGCGCCTCCAACACCACCACCAACGCTGCTCCCGCTCTGGGTGGGCTCTTTGGCA
ACAACGCTGCCAAGCCCGCCACCACCGGGTTCGGTGCCTCCTCCT
Found at i:42914 original size:48 final size:48
Alignment explanation
Indices: 42792--42915 Score: 140
Period size: 51 Copynumber: 2.5 Consensus size: 48
42782 GGGCTTTTCG
* * * *
42792 GCAACAACAACTCCTCGAACGCCTCCTCGGGAGGAGGCCTCTTTGGCA
1 GCAACAACAACACCTCCAATGCCTCCTCCGGAGGAGGCCTCTTTGGCA
* * **
42840 ACAACACCTCCGGCACCTCCAATGCCTCCTCCGGAGGAGGCCTCTTTGGCA
1 GCAACA---ACAACACCTCCAATGCCTCCTCCGGAGGAGGCCTCTTTGGCA
*
42891 GCAACAACAACACCACCAATGCCTC
1 GCAACAACAACACCTCCAATGCCTC
42916 GAGCACCACC
Statistics
Matches: 60, Mismatches: 13, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
48 20 0.33
51 40 0.67
ACGTcount: A:0.25, C:0.40, G:0.20, T:0.15
Consensus pattern (48 bp):
GCAACAACAACACCTCCAATGCCTCCTCCGGAGGAGGCCTCTTTGGCA
Left flanking sequence: Indices 42292 -- 42791
GAGAAAATCTAGAGAACACCTTATAGAGATGAAGATCAAATAAAGATGGGGATACGCCCATAAAT
ACTTTATAAGTTTATGGGCCCCATGCTAACCCCTCACTGATTTGATCTACCGTCGTACTTGCTTC
GATCTAATTTTCCTATCTGTATGAACTACGCACCCAGACCACACAATACATTTCTCTGCCCATTC
TCACTACCAATCTCACTAACCAGTCTCCATTGACTATCTTCCCATTGCAATTGCTTCCTTCCTCC
CCTCCTCCTTTCCTCCCCTTCCTCCCCCTCCTCCTCTTTGCTCCTCTTCCTCCTCCCACTCAAGT
GCGGCGCATCGCATCAACAAAAAACACACCACTACCACATCGATGTTTGGCGCTACTCCTGGAGC
CAACAAGGGGTTCTCCTTTGGCGGCGGCTCTTCCAACACCGCCAGCTCCGGTGGCAACCTCTTCG
GTGGCGCGTCCAACTCCACAGCGCCCGCGTCGGGTGGGCTTTTCG
Right flanking sequence: Indices 42916 -- 43415
GAGCACCACCCAGTCCGGGGGCCTCTTTGGCAACAACAATAACACCCTGGGCGGGTTTGGCGCCA
ACACCAGCAAACCTGGCCTTTTTGGTGGCGCCTCCAACACCACCACCAACGCTGCTCCCGCTCTG
GGTGGGCTCTTTGGCAACAACGCTGCCAAGCCCGCCACCACCGGGTTCGGTGCCTCCTCCTCCTC
CACCAATTCCGGTGGTCTCTTTGGCAACAAGCCCGCGGCGCTGGGGGGCCTCTTCGGCAATACCG
GGGGCACCACCGGGGGCACCACCGGCACTTCCGGGGGCCTCTTTGGCAACAACACCACCAACACC
GCCAACACCACCGCCAACACCGCAGGCAACACGTCTGGGGGTCTCTTTGGTGCTAAACCCGCGTC
TGGAGGCCTTTTTGGTGGCTCCACCGCCAACAACAACACCTCAGGCGGGCTCTTCGGGTCAAAAC
CCGCGGCCCTGGGGGGTCTTTTCGGCTCTACAAACACCACAGGCC
Found at i:43187 original size:12 final size:12
Alignment explanation
Indices: 43172--43200 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
43162 CTTCGGCAAT
43172 ACCGGGGGCACC
1 ACCGGGGGCACC
43184 ACCGGGGGCACC
1 ACCGGGGGCACC
43196 ACCGG
1 ACCGG
43201 CACTTCCGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.41, G:0.41, T:0.00
Consensus pattern (12 bp):
ACCGGGGGCACC
Left flanking sequence: Indices 42672 -- 43171
CTCCTGGAGCCAACAAGGGGTTCTCCTTTGGCGGCGGCTCTTCCAACACCGCCAGCTCCGGTGGC
AACCTCTTCGGTGGCGCGTCCAACTCCACAGCGCCCGCGTCGGGTGGGCTTTTCGGCAACAACAA
CTCCTCGAACGCCTCCTCGGGAGGAGGCCTCTTTGGCAACAACACCTCCGGCACCTCCAATGCCT
CCTCCGGAGGAGGCCTCTTTGGCAGCAACAACAACACCACCAATGCCTCGAGCACCACCCAGTCC
GGGGGCCTCTTTGGCAACAACAATAACACCCTGGGCGGGTTTGGCGCCAACACCAGCAAACCTGG
CCTTTTTGGTGGCGCCTCCAACACCACCACCAACGCTGCTCCCGCTCTGGGTGGGCTCTTTGGCA
ACAACGCTGCCAAGCCCGCCACCACCGGGTTCGGTGCCTCCTCCTCCTCCACCAATTCCGGTGGT
CTCTTTGGCAACAAGCCCGCGGCGCTGGGGGGCCTCTTCGGCAAT
Right flanking sequence: Indices 43201 -- 43700
CACTTCCGGGGGCCTCTTTGGCAACAACACCACCAACACCGCCAACACCACCGCCAACACCGCAG
GCAACACGTCTGGGGGTCTCTTTGGTGCTAAACCCGCGTCTGGAGGCCTTTTTGGTGGCTCCACC
GCCAACAACAACACCTCAGGCGGGCTCTTCGGGTCAAAACCCGCGGCCCTGGGGGGTCTTTTCGG
CTCTACAAACACCACAGGCCAACAGCCGGCCCAGCCAGCAGCCCAGCAGTCCACCGGGCTCTTTG
GCAACCTGGCTGCCAACAAAAACTCGACGGCTCCGCTGTATGCGTGGACCCAGCCCCCGGTGGCA
GTAGCCCAGCAGCCCACAGCGCTGGGGGGGACCACAGCGTCGGTCCACACCTACACCCCGGCGAT
CCACGACCAGCTCGTGAAAATCTCCGAGCAGTGGGACCCGCTGCTGGCCCGCTGTGTGATCAAAA
CCCACCTCTACAACAAGTTCACCGACGAGCAGATGGCGTACTTGA
Found at i:43252 original size:12 final size:12
Alignment explanation
Indices: 43237--43261 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
43227 ACACCACCAA
43237 CACCGCCAACAC
1 CACCGCCAACAC
43249 CACCGCCAACAC
1 CACCGCCAACAC
43261 C
1 C
43262 GCAGGCAACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.60, G:0.08, T:0.00
Consensus pattern (12 bp):
CACCGCCAACAC
Left flanking sequence: Indices 42737 -- 43236
AACCTCTTCGGTGGCGCGTCCAACTCCACAGCGCCCGCGTCGGGTGGGCTTTTCGGCAACAACAA
CTCCTCGAACGCCTCCTCGGGAGGAGGCCTCTTTGGCAACAACACCTCCGGCACCTCCAATGCCT
CCTCCGGAGGAGGCCTCTTTGGCAGCAACAACAACACCACCAATGCCTCGAGCACCACCCAGTCC
GGGGGCCTCTTTGGCAACAACAATAACACCCTGGGCGGGTTTGGCGCCAACACCAGCAAACCTGG
CCTTTTTGGTGGCGCCTCCAACACCACCACCAACGCTGCTCCCGCTCTGGGTGGGCTCTTTGGCA
ACAACGCTGCCAAGCCCGCCACCACCGGGTTCGGTGCCTCCTCCTCCTCCACCAATTCCGGTGGT
CTCTTTGGCAACAAGCCCGCGGCGCTGGGGGGCCTCTTCGGCAATACCGGGGGCACCACCGGGGG
CACCACCGGCACTTCCGGGGGCCTCTTTGGCAACAACACCACCAA
Right flanking sequence: Indices 43262 -- 43761
GCAGGCAACACGTCTGGGGGTCTCTTTGGTGCTAAACCCGCGTCTGGAGGCCTTTTTGGTGGCTC
CACCGCCAACAACAACACCTCAGGCGGGCTCTTCGGGTCAAAACCCGCGGCCCTGGGGGGTCTTT
TCGGCTCTACAAACACCACAGGCCAACAGCCGGCCCAGCCAGCAGCCCAGCAGTCCACCGGGCTC
TTTGGCAACCTGGCTGCCAACAAAAACTCGACGGCTCCGCTGTATGCGTGGACCCAGCCCCCGGT
GGCAGTAGCCCAGCAGCCCACAGCGCTGGGGGGGACCACAGCGTCGGTCCACACCTACACCCCGG
CGATCCACGACCAGCTCGTGAAAATCTCCGAGCAGTGGGACCCGCTGCTGGCCCGCTGTGTGATC
AAAACCCACCTCTACAACAAGTTCACCGACGAGCAGATGGCGTACTTGATGGCCCAGCCACGGCC
AGCGCTGGAGACCCCCGAGGAGTGGGACGAGGCGATGGCGCACCG
Found at i:43252 original size:21 final size:21
Alignment explanation
Indices: 43222--43263 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
43212 GCCTCTTTGG
43222 CAACAACACCACCAACACCGC
1 CAACAACACCACCAACACCGC
* *
43243 CAACACCACCGCCAACACCGC
1 CAACAACACCACCAACACCGC
43264 AGGCAACACG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.38, C:0.55, G:0.07, T:0.00
Consensus pattern (21 bp):
CAACAACACCACCAACACCGC
Left flanking sequence: Indices 42722 -- 43221
GCCAGCTCCGGTGGCAACCTCTTCGGTGGCGCGTCCAACTCCACAGCGCCCGCGTCGGGTGGGCT
TTTCGGCAACAACAACTCCTCGAACGCCTCCTCGGGAGGAGGCCTCTTTGGCAACAACACCTCCG
GCACCTCCAATGCCTCCTCCGGAGGAGGCCTCTTTGGCAGCAACAACAACACCACCAATGCCTCG
AGCACCACCCAGTCCGGGGGCCTCTTTGGCAACAACAATAACACCCTGGGCGGGTTTGGCGCCAA
CACCAGCAAACCTGGCCTTTTTGGTGGCGCCTCCAACACCACCACCAACGCTGCTCCCGCTCTGG
GTGGGCTCTTTGGCAACAACGCTGCCAAGCCCGCCACCACCGGGTTCGGTGCCTCCTCCTCCTCC
ACCAATTCCGGTGGTCTCTTTGGCAACAAGCCCGCGGCGCTGGGGGGCCTCTTCGGCAATACCGG
GGGCACCACCGGGGGCACCACCGGCACTTCCGGGGGCCTCTTTGG
Right flanking sequence: Indices 43264 -- 43763
AGGCAACACGTCTGGGGGTCTCTTTGGTGCTAAACCCGCGTCTGGAGGCCTTTTTGGTGGCTCCA
CCGCCAACAACAACACCTCAGGCGGGCTCTTCGGGTCAAAACCCGCGGCCCTGGGGGGTCTTTTC
GGCTCTACAAACACCACAGGCCAACAGCCGGCCCAGCCAGCAGCCCAGCAGTCCACCGGGCTCTT
TGGCAACCTGGCTGCCAACAAAAACTCGACGGCTCCGCTGTATGCGTGGACCCAGCCCCCGGTGG
CAGTAGCCCAGCAGCCCACAGCGCTGGGGGGGACCACAGCGTCGGTCCACACCTACACCCCGGCG
ATCCACGACCAGCTCGTGAAAATCTCCGAGCAGTGGGACCCGCTGCTGGCCCGCTGTGTGATCAA
AACCCACCTCTACAACAAGTTCACCGACGAGCAGATGGCGTACTTGATGGCCCAGCCACGGCCAG
CGCTGGAGACCCCCGAGGAGTGGGACGAGGCGATGGCGCACCGTC
Found at i:51048 original size:14 final size:14
Alignment explanation
Indices: 51031--51059 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
51021 ATGCGGTCAC
51031 AGGGCTGCGAACCG
1 AGGGCTGCGAACCG
51045 AGGGCTGCGAACCG
1 AGGGCTGCGAACCG
51059 A
1 A
51060 TAGCGAAGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.24, C:0.28, G:0.41, T:0.07
Consensus pattern (14 bp):
AGGGCTGCGAACCG
Left flanking sequence: Indices 50531 -- 51030
GACCCCTCGGGAGAGCTCACACCCGGGATGGTAGCGGCCCACCGCGGAGCCTGCACCTTGACGTC
GTCGTAGAAGTCGCGGAACTCGCCCTTGCCAAACCGCAGCAGCTCTTTTTCCGCAACCACCGGGT
GGTTGGTGATGGTGTCGTTGACCGAGGTCAACACTGCCAAAAGGGCTTTAATCACCGGGGTGTCG
GCACAGCTGGGGTCGTTGTTGACCAAGCCCTCGGCCAGGTCCTGGAGGGCCTCGACGAACTCGAC
CACGAGGTTGTAGGTGGCCAGGTCGACCCACTTCTCGAGGTCCTGTGGGGTGACGATTCGCTTTT
CGGGTATCATAGCGGGTACGGGGGAAATGTGTGTGAAAAATTGGTTGGGGTGAAACTTTGGGTGG
AATAGGGGGTGGCTGTGGGTTGGTTTGGTTCTGGAAGCCGGGGGTGGTGGTGGTGTTCGCTGTCG
AGGTTGTTGCAGTTGGCTCACGATTTGGAAGGCAAATGCGGTCAC
Right flanking sequence: Indices 51060 -- 51559
TAGCGAAGGGATAGAAGGGTAGGCAGAAAGGGCGGTTAGGAGGCGAGTTAGGAGTACAAGGGGTT
TTATTGGGGTTGAGTAGGCTGCGTGTACGGTTTTTTTGTCTATTTTCTTGTCTAGGTAGATACTT
TGGAAGGCCCCCTACAGTTTGCATTCCATGGCTATGACGTAATGGATAGTCACCACGTAAGACAA
CGCGTCAGCTGTTGACTAAAACAAATGAACCTTCAAGGAAGTGTTCACTGTAACCTCGTGATGTG
TTACAATACTCTCGCCCAAACAACAATGGCCCATAAACATTGACACAGACTGTAGACACAACAAC
TCTGACCACCCACCAACACCAACCGCAATGCCAACCACCACCAATACAACACAAGCCACTAACAC
CTCAACCACTACCACTACTACCACTACTACCACTACTACCATAACCACCACTACCACCCCTACCG
GATTCCACACCCCATCTCCACCCATCCCACCCCTCACTCGACTTC
Found at i:51471 original size:9 final size:9
Alignment explanation
Indices: 51457--51506 Score: 70
Period size: 9 Copynumber: 5.9 Consensus size: 9
51447 CACCTCAACC
51457 ACTACCACT
1 ACTACCACT
51466 ACTACCACT
1 ACTACCACT
51475 ACTACCACT
1 ACTACCACT
51484 ACTACCA-T
1 ACTACCACT
*
51492 A--ACCACC
1 ACTACCACT
51499 ACTACCAC
1 ACTACCAC
51507 CCCTACCGGA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
6 4 0.11
7 1 0.03
8 2 0.05
9 30 0.81
ACGTcount: A:0.36, C:0.46, G:0.00, T:0.18
Consensus pattern (9 bp):
ACTACCACT
Left flanking sequence: Indices 50957 -- 51456
GCCGGGGGTGGTGGTGGTGTTCGCTGTCGAGGTTGTTGCAGTTGGCTCACGATTTGGAAGGCAAA
TGCGGTCACAGGGCTGCGAACCGAGGGCTGCGAACCGATAGCGAAGGGATAGAAGGGTAGGCAGA
AAGGGCGGTTAGGAGGCGAGTTAGGAGTACAAGGGGTTTTATTGGGGTTGAGTAGGCTGCGTGTA
CGGTTTTTTTGTCTATTTTCTTGTCTAGGTAGATACTTTGGAAGGCCCCCTACAGTTTGCATTCC
ATGGCTATGACGTAATGGATAGTCACCACGTAAGACAACGCGTCAGCTGTTGACTAAAACAAATG
AACCTTCAAGGAAGTGTTCACTGTAACCTCGTGATGTGTTACAATACTCTCGCCCAAACAACAAT
GGCCCATAAACATTGACACAGACTGTAGACACAACAACTCTGACCACCCACCAACACCAACCGCA
ATGCCAACCACCACCAATACAACACAAGCCACTAACACCTCAACC
Right flanking sequence: Indices 51507 -- 52006
CCCTACCGGATTCCACACCCCATCTCCACCCATCCCACCCCTCACTCGACTTCTCCCACGTGACC
ACCACCTCACGTGGATCGTTCCTTCTCCATACCACCACCATGTCCACCGACCCTTCGCCAGCGCC
CAGGCGCTCCGGACGCAACCGCCCGTCCCACCAGCAGTTCCAGGTGTACAAGTCCAAGGGCAAGG
TGGTTCTGAACATCATGGACCTTTTGCCTGGGCTCAACGACATCCTGGACGCGTTCGAGGCGTTA
CCGTTGGATATCGTGAAATATTTCACCCTCTTGAAGGAGATCGATGCCAAGTGCATCAACACGGT
GCCCCAGATCAACACGCTCATCGAGCGATACGTGGCTGACCTCCACCGCAACGGGACTGTGGACG
ATGGGTTGAGCGAGGGCACAGAGCAAGCCTCGGAGCCAGCGACCGAGGCCAGTGAGCAGGCTGGG
GGGCCCGCTGACCAGCCAGACGAGTCAGCCACCGACTCCACTTCC
Found at i:51507 original size:9 final size:9
Alignment explanation
Indices: 51460--51513 Score: 56
Period size: 9 Copynumber: 6.0 Consensus size: 9
51450 CTCAACCACT
*
51460 ACCACTACT
1 ACCACTACC
*
51469 ACCACTACT
1 ACCACTACC
*
51478 ACCACTACT
1 ACCACTACC
51487 ACCA-TAACC
1 ACCACT-ACC
51496 ACCACTACC
1 ACCACTACC
*
51505 ACCCCTACC
1 ACCACTACC
51514 GGATTCCACA
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
8 1 0.02
9 39 0.95
10 1 0.02
ACGTcount: A:0.33, C:0.50, G:0.00, T:0.17
Consensus pattern (9 bp):
ACCACTACC
Left flanking sequence: Indices 50960 -- 51459
GGGGGTGGTGGTGGTGTTCGCTGTCGAGGTTGTTGCAGTTGGCTCACGATTTGGAAGGCAAATGC
GGTCACAGGGCTGCGAACCGAGGGCTGCGAACCGATAGCGAAGGGATAGAAGGGTAGGCAGAAAG
GGCGGTTAGGAGGCGAGTTAGGAGTACAAGGGGTTTTATTGGGGTTGAGTAGGCTGCGTGTACGG
TTTTTTTGTCTATTTTCTTGTCTAGGTAGATACTTTGGAAGGCCCCCTACAGTTTGCATTCCATG
GCTATGACGTAATGGATAGTCACCACGTAAGACAACGCGTCAGCTGTTGACTAAAACAAATGAAC
CTTCAAGGAAGTGTTCACTGTAACCTCGTGATGTGTTACAATACTCTCGCCCAAACAACAATGGC
CCATAAACATTGACACAGACTGTAGACACAACAACTCTGACCACCCACCAACACCAACCGCAATG
CCAACCACCACCAATACAACACAAGCCACTAACACCTCAACCACT
Right flanking sequence: Indices 51514 -- 52013
GGATTCCACACCCCATCTCCACCCATCCCACCCCTCACTCGACTTCTCCCACGTGACCACCACCT
CACGTGGATCGTTCCTTCTCCATACCACCACCATGTCCACCGACCCTTCGCCAGCGCCCAGGCGC
TCCGGACGCAACCGCCCGTCCCACCAGCAGTTCCAGGTGTACAAGTCCAAGGGCAAGGTGGTTCT
GAACATCATGGACCTTTTGCCTGGGCTCAACGACATCCTGGACGCGTTCGAGGCGTTACCGTTGG
ATATCGTGAAATATTTCACCCTCTTGAAGGAGATCGATGCCAAGTGCATCAACACGGTGCCCCAG
ATCAACACGCTCATCGAGCGATACGTGGCTGACCTCCACCGCAACGGGACTGTGGACGATGGGTT
GAGCGAGGGCACAGAGCAAGCCTCGGAGCCAGCGACCGAGGCCAGTGAGCAGGCTGGGGGGCCCG
CTGACCAGCCAGACGAGTCAGCCACCGACTCCACTTCCGCAAACA
Found at i:54575 original size:21 final size:19
Alignment explanation
Indices: 54530--54582 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
54520 GCTAGGGTGG
54530 TTACACACAACTAGGTTGC
1 TTACACACAACTAGGTTGC
*
54549 TTACACACAACTAGGTTGT
1 TTACACACAACTAGGTTGC
54568 TTACACAC-ACTAGGT
1 TTACACACAACTAGGT
54583 CGTTTATCTG
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
18 7 0.21
19 26 0.79
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (19 bp):
TTACACACAACTAGGTTGC
Left flanking sequence: Indices 54030 -- 54529
CAGCCACCACCGAGGGTGTAGGCCAACGAGTGACCCAAGTTGCCAATGAGGTTGAGGGCCCAGGG
GATAATGAAAAGACCCTCGGCCTGGGCCTCGGGAGCAGCAGCGGGGGCAGCCAGCACGGTGGCGG
CGATGGCAATGGCAGAGATGGCGGTGGAGAACTTCATTAGGGCTGGAGAAAAGCCAGAAACCCGA
GGAGGTATTTATAGTTGGGACGGCTACAAGGGTTCGGCAACCCAAGGCCACCCACGTTTGCCTGG
GTTCCCCTTTTGGGTGGGTTCTATGCTGAAAAAGGGTTTGCAGCCACAAAACGGCTCGTGTTTGT
GCTACTTCGTTAGACGATCAGCAAGGGGAGATCATGTAGAGAAGAAAGCAGGGGGGGAGGAAGCT
ACCGTTGAAGATAATACACAGATCACCTTGGGTTGGCTTTTGAGAAGACAAAATACTAGAGGAAT
ATGTACACTACTCCTTGTCGTATCGGGTGAGCGATGCTAGGGTGG
Right flanking sequence: Indices 54583 -- 55082
CGTTTATCTGCTGTTTGAGAGTATATTTTGAGTATATTCTCTCTTATTTTGGGCTTGGCGGGCGG
TCCCGTGTGATCGCGAACCTGCTCGAAGAGGGGCTATAGAGGGGCAATAGAAGGGTTATAGAGAG
GATGGCTGCAAAATCCCGAAGTGGCCAATTCACCACCAGGAGGCTAAGCAAATACCACTTGTATT
TTACCGTGTCTGGTTCATAGCTACCACTGATTCTACCTCCCTTACCCGCCCGTTATCCGCTATCA
AACCGCCTCTCGAGCTGTCACAAAACCGCGACCGGTGCCTGATTGGGTCGCCATTGCGAACACGA
GCGGGCCCCGTCCAGAGACTTAGACGACGGACACGGAGGGCTCGTGCCAGCGTCATTGTGCCACT
CTCATGTCCTAGTTGTCTCGTCAACCATCCCTCGGACTTATGAGCCCATTCGCCACAAAAGTAAG
GTTTAGCTAGACGAAGCAGGCTCAAGCAGGCTGAAGCAGGCTGAG
Found at i:55066 original size:10 final size:10
Alignment explanation
Indices: 55051--55099 Score: 57
Period size: 10 Copynumber: 5.0 Consensus size: 10
55041 TAGCTAGACG
55051 AAGCAGGCTC
1 AAGCAGGCTC
*
55061 AAGCAGGCTG
1 AAGCAGGCTC
55071 AAGCAGGCT-
1 AAGCAGGCTC
*
55080 GAGCAGGC-C
1 AAGCAGGCTC
55089 AAAGCAGGCTC
1 -AAGCAGGCTC
55100 GGTTAGAGCC
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
9 7 0.21
10 25 0.76
11 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.35, T:0.08
Consensus pattern (10 bp):
AAGCAGGCTC
Left flanking sequence: Indices 54551 -- 55050
ACACACAACTAGGTTGTTTACACACACTAGGTCGTTTATCTGCTGTTTGAGAGTATATTTTGAGT
ATATTCTCTCTTATTTTGGGCTTGGCGGGCGGTCCCGTGTGATCGCGAACCTGCTCGAAGAGGGG
CTATAGAGGGGCAATAGAAGGGTTATAGAGAGGATGGCTGCAAAATCCCGAAGTGGCCAATTCAC
CACCAGGAGGCTAAGCAAATACCACTTGTATTTTACCGTGTCTGGTTCATAGCTACCACTGATTC
TACCTCCCTTACCCGCCCGTTATCCGCTATCAAACCGCCTCTCGAGCTGTCACAAAACCGCGACC
GGTGCCTGATTGGGTCGCCATTGCGAACACGAGCGGGCCCCGTCCAGAGACTTAGACGACGGACA
CGGAGGGCTCGTGCCAGCGTCATTGTGCCACTCTCATGTCCTAGTTGTCTCGTCAACCATCCCTC
GGACTTATGAGCCCATTCGCCACAAAAGTAAGGTTTAGCTAGACG
Right flanking sequence: Indices 55100 -- 55599
GGTTAGAGCCATCGATCATTAGTTTAAACGCACTATTACCCTAAAGCCCACTTAGAATATAGGGC
CCTACGCACGCTGCGTAGCCGCGTCGTTTCAGCTATTTATAGGTCGGTGTAGGCAGACACTTTGT
CGTGAGCGACGGGGATCTGCAGGGTGATTGGCTGGTTCTTCTAGACTGTTCTGTGACGGTTCCAC
AGACGGTCATTGTTGCGTCGTCTCGGCTATGGTTGCAAAAGGAGTTATGGTGATAACTCCGGTCG
GGTCTCCGGTAATGCCTCTGACCAAACAAAAACACTACGCTTGTGACTACAGCACTTGTACTACA
GCACTTGTGACTACAGCACTTCCAACCAAAGTGGCACATTCCCGCCTCATCGCAGGCACAACCAG
AGATCCCCCTGGGCCACACCGCTCTCTTGGCACAGTGCCGATCTCGCAAAAATTAATGCTACAAT
TAATGCTTCCGGACAGAGCTCTTACTGCGATTTGCGACGTATGCC
Found at i:55086 original size:19 final size:20
Alignment explanation
Indices: 55049--55099 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
55039 TTTAGCTAGA
55049 CGAAGCAGGCTCAAGCAGGC
1 CGAAGCAGGCTCAAGCAGGC
* *
55069 TGAAGCAGGCT-GAGCAGGC
1 CGAAGCAGGCTCAAGCAGGC
*
55088 CAAAGCAGGCTC
1 CGAAGCAGGCTC
55100 GGTTAGAGCC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
19 16 0.62
20 10 0.38
ACGTcount: A:0.29, C:0.27, G:0.35, T:0.08
Consensus pattern (20 bp):
CGAAGCAGGCTCAAGCAGGC
Left flanking sequence: Indices 54549 -- 55048
TTACACACAACTAGGTTGTTTACACACACTAGGTCGTTTATCTGCTGTTTGAGAGTATATTTTGA
GTATATTCTCTCTTATTTTGGGCTTGGCGGGCGGTCCCGTGTGATCGCGAACCTGCTCGAAGAGG
GGCTATAGAGGGGCAATAGAAGGGTTATAGAGAGGATGGCTGCAAAATCCCGAAGTGGCCAATTC
ACCACCAGGAGGCTAAGCAAATACCACTTGTATTTTACCGTGTCTGGTTCATAGCTACCACTGAT
TCTACCTCCCTTACCCGCCCGTTATCCGCTATCAAACCGCCTCTCGAGCTGTCACAAAACCGCGA
CCGGTGCCTGATTGGGTCGCCATTGCGAACACGAGCGGGCCCCGTCCAGAGACTTAGACGACGGA
CACGGAGGGCTCGTGCCAGCGTCATTGTGCCACTCTCATGTCCTAGTTGTCTCGTCAACCATCCC
TCGGACTTATGAGCCCATTCGCCACAAAAGTAAGGTTTAGCTAGA
Right flanking sequence: Indices 55100 -- 55599
GGTTAGAGCCATCGATCATTAGTTTAAACGCACTATTACCCTAAAGCCCACTTAGAATATAGGGC
CCTACGCACGCTGCGTAGCCGCGTCGTTTCAGCTATTTATAGGTCGGTGTAGGCAGACACTTTGT
CGTGAGCGACGGGGATCTGCAGGGTGATTGGCTGGTTCTTCTAGACTGTTCTGTGACGGTTCCAC
AGACGGTCATTGTTGCGTCGTCTCGGCTATGGTTGCAAAAGGAGTTATGGTGATAACTCCGGTCG
GGTCTCCGGTAATGCCTCTGACCAAACAAAAACACTACGCTTGTGACTACAGCACTTGTACTACA
GCACTTGTGACTACAGCACTTCCAACCAAAGTGGCACATTCCCGCCTCATCGCAGGCACAACCAG
AGATCCCCCTGGGCCACACCGCTCTCTTGGCACAGTGCCGATCTCGCAAAAATTAATGCTACAAT
TAATGCTTCCGGACAGAGCTCTTACTGCGATTTGCGACGTATGCC
Found at i:55437 original size:15 final size:15
Alignment explanation
Indices: 55399--55445 Score: 87
Period size: 15 Copynumber: 3.2 Consensus size: 15
55389 AAACACTACG
55399 CTTGTGACTACAGCA
1 CTTGTGACTACAGCA
55414 CTTGT-ACTACAGCA
1 CTTGTGACTACAGCA
55428 CTTGTGACTACAGCA
1 CTTGTGACTACAGCA
55443 CTT
1 CTT
55446 CCAACCAAAG
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
14 14 0.45
15 17 0.55
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.30
Consensus pattern (15 bp):
CTTGTGACTACAGCA
Left flanking sequence: Indices 54899 -- 55398
CGAACACGAGCGGGCCCCGTCCAGAGACTTAGACGACGGACACGGAGGGCTCGTGCCAGCGTCAT
TGTGCCACTCTCATGTCCTAGTTGTCTCGTCAACCATCCCTCGGACTTATGAGCCCATTCGCCAC
AAAAGTAAGGTTTAGCTAGACGAAGCAGGCTCAAGCAGGCTGAAGCAGGCTGAGCAGGCCAAAGC
AGGCTCGGTTAGAGCCATCGATCATTAGTTTAAACGCACTATTACCCTAAAGCCCACTTAGAATA
TAGGGCCCTACGCACGCTGCGTAGCCGCGTCGTTTCAGCTATTTATAGGTCGGTGTAGGCAGACA
CTTTGTCGTGAGCGACGGGGATCTGCAGGGTGATTGGCTGGTTCTTCTAGACTGTTCTGTGACGG
TTCCACAGACGGTCATTGTTGCGTCGTCTCGGCTATGGTTGCAAAAGGAGTTATGGTGATAACTC
CGGTCGGGTCTCCGGTAATGCCTCTGACCAAACAAAAACACTACG
Right flanking sequence: Indices 55446 -- 55945
CCAACCAAAGTGGCACATTCCCGCCTCATCGCAGGCACAACCAGAGATCCCCCTGGGCCACACCG
CTCTCTTGGCACAGTGCCGATCTCGCAAAAATTAATGCTACAATTAATGCTTCCGGACAGAGCTC
TTACTGCGATTTGCGACGTATGCCAGCCACGCCGATCCTCGCGTTTGTATTCCTTGCTGGGTGCT
TTGTTCTGTCCTTGTGGCTAGATGTGCCTGTTTGGGCCATTTTCACGTGAAGATTGAGAAAAGCA
ACGGACCGGTTAAACGACGCTGCCGAAGCAATTCGCACATGTCCGTGCCACGGCAACCCTACGAC
GGCGCTGACGGCCCTGGTGTTAGCGCCATCACCACCGGGAGACCCGTTGTAGCCCGGCCCCCTGG
TGGTGCGGCAGATCTGGCGCACCTTCCGGCACTGACAGCAGGTGCGGTGCTGCCGTCACTGCGAA
CAATAGCACCGGTGTGTAATTAGACGATGAGGGAAAAAGAGGTGG
Found at i:56185 original size:14 final size:14
Alignment explanation
Indices: 56168--56214 Score: 80
Period size: 14 Copynumber: 3.5 Consensus size: 14
56158 AGGGTAGGGG
56168 AGTAGAGCAGAGGC
1 AGTAGAGCAGAGGC
56182 AGTAGAGCAGAGGC
1 AGTAGAGCAGAGGC
56196 AGT--AGCAGAGGC
1 AGTAGAGCAGAGGC
56208 AGTAGAG
1 AGTAGAG
56215 GAGTAGAGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.39
14 19 0.61
ACGTcount: A:0.36, C:0.13, G:0.43, T:0.09
Consensus pattern (14 bp):
AGTAGAGCAGAGGC
Left flanking sequence: Indices 55668 -- 56167
CTGTTTGGGCCATTTTCACGTGAAGATTGAGAAAAGCAACGGACCGGTTAAACGACGCTGCCGAA
GCAATTCGCACATGTCCGTGCCACGGCAACCCTACGACGGCGCTGACGGCCCTGGTGTTAGCGCC
ATCACCACCGGGAGACCCGTTGTAGCCCGGCCCCCTGGTGGTGCGGCAGATCTGGCGCACCTTCC
GGCACTGACAGCAGGTGCGGTGCTGCCGTCACTGCGAACAATAGCACCGGTGTGTAATTAGACGA
TGAGGGAAAAAGAGGTGGACAGAGGACAAAGACGAAGCAGGTAGTTAGTGGGCACGACTGGGGCA
GATCACCCTAAGCGACCTGGTTGCAAACACCCATCGCAGCGGACAATGCACCAGCGCCAAGGATG
CGAAGGTTTCGCGTAGCCTCGGCCCTGTAGCCGCTGCACGGACCCTGCCGTAGGGCGCCTTGAAC
AGGACATGGATCTAGCCGGTGAGCCGAGGGTCAGTAGGGTAGGGG
Right flanking sequence: Indices 56215 -- 56714
GAGTAGAGAAGTAGAGATTAAGCAGTCATTCAGTCATTACTAAGGCTGGCATTGGCACGTAGGGG
ACGGCAACCCCAGAAGAGGCTTACGAGGTGGTGGCTATTGGAGGAGAAAGTGGTGTTGGAGGAGA
AAGTGGTGGAATTAGAGGGAAATTGGTGGAGTTAGAGGGAAAGTGGTGGCTATTGGTGGCTATTG
GAAGGGAACGTCGGGGCAAGTCGTCGGGTCCACCAGCCGTGGGAAGTGGGCACACGGATTAGAGC
AGGTTTACGACCACCGCCGTGACCAACCCCACGATGTCGTCAAAAGCAACAGAGCCATTCGGCCA
CTTTCAGGTGATTTGCGGTGCCATGCAAGCCCTGTCCTTGAGCCCGGTAAAAAATACTGAAATAA
TACCGGAGAAGGCCCGACACTAGGAGGTCACGGTGGTGCTGTGGCCGGGGTTACTGGGAGAGTGG
TGATGGTAGAGAGAAGATGTAGAGAGAAGAGGTAGAGAGAAGAGG
Found at i:56204 original size:12 final size:12
Alignment explanation
Indices: 56173--56212 Score: 62
Period size: 12 Copynumber: 3.2 Consensus size: 12
56163 AGGGGAGTAG
56173 AGCAGAGGCAGT
1 AGCAGAGGCAGT
56185 AGAGCAGAGGCAGT
1 --AGCAGAGGCAGT
56199 AGCAGAGGCAGT
1 AGCAGAGGCAGT
56211 AG
1 AG
56213 AGGAGTAGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 14 0.54
14 12 0.46
ACGTcount: A:0.35, C:0.15, G:0.42, T:0.07
Consensus pattern (12 bp):
AGCAGAGGCAGT
Left flanking sequence: Indices 55673 -- 56172
TGGGCCATTTTCACGTGAAGATTGAGAAAAGCAACGGACCGGTTAAACGACGCTGCCGAAGCAAT
TCGCACATGTCCGTGCCACGGCAACCCTACGACGGCGCTGACGGCCCTGGTGTTAGCGCCATCAC
CACCGGGAGACCCGTTGTAGCCCGGCCCCCTGGTGGTGCGGCAGATCTGGCGCACCTTCCGGCAC
TGACAGCAGGTGCGGTGCTGCCGTCACTGCGAACAATAGCACCGGTGTGTAATTAGACGATGAGG
GAAAAAGAGGTGGACAGAGGACAAAGACGAAGCAGGTAGTTAGTGGGCACGACTGGGGCAGATCA
CCCTAAGCGACCTGGTTGCAAACACCCATCGCAGCGGACAATGCACCAGCGCCAAGGATGCGAAG
GTTTCGCGTAGCCTCGGCCCTGTAGCCGCTGCACGGACCCTGCCGTAGGGCGCCTTGAACAGGAC
ATGGATCTAGCCGGTGAGCCGAGGGTCAGTAGGGTAGGGGAGTAG
Right flanking sequence: Indices 56213 -- 56712
AGGAGTAGAGAAGTAGAGATTAAGCAGTCATTCAGTCATTACTAAGGCTGGCATTGGCACGTAGG
GGACGGCAACCCCAGAAGAGGCTTACGAGGTGGTGGCTATTGGAGGAGAAAGTGGTGTTGGAGGA
GAAAGTGGTGGAATTAGAGGGAAATTGGTGGAGTTAGAGGGAAAGTGGTGGCTATTGGTGGCTAT
TGGAAGGGAACGTCGGGGCAAGTCGTCGGGTCCACCAGCCGTGGGAAGTGGGCACACGGATTAGA
GCAGGTTTACGACCACCGCCGTGACCAACCCCACGATGTCGTCAAAAGCAACAGAGCCATTCGGC
CACTTTCAGGTGATTTGCGGTGCCATGCAAGCCCTGTCCTTGAGCCCGGTAAAAAATACTGAAAT
AATACCGGAGAAGGCCCGACACTAGGAGGTCACGGTGGTGCTGTGGCCGGGGTTACTGGGAGAGT
GGTGATGGTAGAGAGAAGATGTAGAGAGAAGAGGTAGAGAGAAGA
Found at i:56354 original size:15 final size:18
Alignment explanation
Indices: 56317--56352 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
56307 GTGGTGGCTA
56317 TTGGAGGAGAAAGTGGTG
1 TTGGAGGAGAAAGTGGTG
56335 TTGGAGGAGAAAGTGGTG
1 TTGGAGGAGAAAGTGGTG
56353 GAATTAGAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.50, T:0.22
Consensus pattern (18 bp):
TTGGAGGAGAAAGTGGTG
Left flanking sequence: Indices 55817 -- 56316
TTGTAGCCCGGCCCCCTGGTGGTGCGGCAGATCTGGCGCACCTTCCGGCACTGACAGCAGGTGCG
GTGCTGCCGTCACTGCGAACAATAGCACCGGTGTGTAATTAGACGATGAGGGAAAAAGAGGTGGA
CAGAGGACAAAGACGAAGCAGGTAGTTAGTGGGCACGACTGGGGCAGATCACCCTAAGCGACCTG
GTTGCAAACACCCATCGCAGCGGACAATGCACCAGCGCCAAGGATGCGAAGGTTTCGCGTAGCCT
CGGCCCTGTAGCCGCTGCACGGACCCTGCCGTAGGGCGCCTTGAACAGGACATGGATCTAGCCGG
TGAGCCGAGGGTCAGTAGGGTAGGGGAGTAGAGCAGAGGCAGTAGAGCAGAGGCAGTAGCAGAGG
CAGTAGAGGAGTAGAGAAGTAGAGATTAAGCAGTCATTCAGTCATTACTAAGGCTGGCATTGGCA
CGTAGGGGACGGCAACCCCAGAAGAGGCTTACGAGGTGGTGGCTA
Right flanking sequence: Indices 56353 -- 56852
GAATTAGAGGGAAATTGGTGGAGTTAGAGGGAAAGTGGTGGCTATTGGTGGCTATTGGAAGGGAA
CGTCGGGGCAAGTCGTCGGGTCCACCAGCCGTGGGAAGTGGGCACACGGATTAGAGCAGGTTTAC
GACCACCGCCGTGACCAACCCCACGATGTCGTCAAAAGCAACAGAGCCATTCGGCCACTTTCAGG
TGATTTGCGGTGCCATGCAAGCCCTGTCCTTGAGCCCGGTAAAAAATACTGAAATAATACCGGAG
AAGGCCCGACACTAGGAGGTCACGGTGGTGCTGTGGCCGGGGTTACTGGGAGAGTGGTGATGGTA
GAGAGAAGATGTAGAGAGAAGAGGTAGAGAGAAGAGGTGTTGTGGTGTGGTGTTGTGGTGGGTGG
AAGGTGGATTGATTATGGGTTGGTTGCGAACGTTTCGTTCAGTTGTTGCTTCTGTTATTGTAGTT
ATTATCTGATCGCTCAATTCCCTGTTGGGTGCTCGTCACATTCCA
Found at i:56371 original size:20 final size:20
Alignment explanation
Indices: 56338--56393 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
56328 AGTGGTGTTG
56338 GAGGAGAAAGTGGTGGAATTA
1 GAGG-GAAAGTGGTGGAATTA
* *
56359 GAGGGAAATTGGTGGAGTTA
1 GAGGGAAAGTGGTGGAATTA
56379 GAGGGAAAGTGGTGG
1 GAGGGAAAGTGGTGG
56394 CTATTGGTGG
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
20 28 0.88
21 4 0.12
ACGTcount: A:0.32, C:0.00, G:0.48, T:0.20
Consensus pattern (20 bp):
GAGGGAAAGTGGTGGAATTA
Left flanking sequence: Indices 55838 -- 56337
GTGCGGCAGATCTGGCGCACCTTCCGGCACTGACAGCAGGTGCGGTGCTGCCGTCACTGCGAACA
ATAGCACCGGTGTGTAATTAGACGATGAGGGAAAAAGAGGTGGACAGAGGACAAAGACGAAGCAG
GTAGTTAGTGGGCACGACTGGGGCAGATCACCCTAAGCGACCTGGTTGCAAACACCCATCGCAGC
GGACAATGCACCAGCGCCAAGGATGCGAAGGTTTCGCGTAGCCTCGGCCCTGTAGCCGCTGCACG
GACCCTGCCGTAGGGCGCCTTGAACAGGACATGGATCTAGCCGGTGAGCCGAGGGTCAGTAGGGT
AGGGGAGTAGAGCAGAGGCAGTAGAGCAGAGGCAGTAGCAGAGGCAGTAGAGGAGTAGAGAAGTA
GAGATTAAGCAGTCATTCAGTCATTACTAAGGCTGGCATTGGCACGTAGGGGACGGCAACCCCAG
AAGAGGCTTACGAGGTGGTGGCTATTGGAGGAGAAAGTGGTGTTG
Right flanking sequence: Indices 56394 -- 56893
CTATTGGTGGCTATTGGAAGGGAACGTCGGGGCAAGTCGTCGGGTCCACCAGCCGTGGGAAGTGG
GCACACGGATTAGAGCAGGTTTACGACCACCGCCGTGACCAACCCCACGATGTCGTCAAAAGCAA
CAGAGCCATTCGGCCACTTTCAGGTGATTTGCGGTGCCATGCAAGCCCTGTCCTTGAGCCCGGTA
AAAAATACTGAAATAATACCGGAGAAGGCCCGACACTAGGAGGTCACGGTGGTGCTGTGGCCGGG
GTTACTGGGAGAGTGGTGATGGTAGAGAGAAGATGTAGAGAGAAGAGGTAGAGAGAAGAGGTGTT
GTGGTGTGGTGTTGTGGTGGGTGGAAGGTGGATTGATTATGGGTTGGTTGCGAACGTTTCGTTCA
GTTGTTGCTTCTGTTATTGTAGTTATTATCTGATCGCTCAATTCCCTGTTGGGTGCTCGTCACAT
TCCATCTAAGTGCCAATTATCTCGGTGGTGTAGATCTTAACTAAA
Found at i:56708 original size:15 final size:13
Alignment explanation
Indices: 56674--56715 Score: 75
Period size: 13 Copynumber: 3.2 Consensus size: 13
56664 GAGTGGTGAT
56674 GGTAGAGAGAAGA
1 GGTAGAGAGAAGA
*
56687 TGTAGAGAGAAGA
1 GGTAGAGAGAAGA
56700 GGTAGAGAGAAGA
1 GGTAGAGAGAAGA
56713 GGT
1 GGT
56716 GTTGTGGTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.43, C:0.00, G:0.45, T:0.12
Consensus pattern (13 bp):
GGTAGAGAGAAGA
Left flanking sequence: Indices 56174 -- 56673
GCAGAGGCAGTAGAGCAGAGGCAGTAGCAGAGGCAGTAGAGGAGTAGAGAAGTAGAGATTAAGCA
GTCATTCAGTCATTACTAAGGCTGGCATTGGCACGTAGGGGACGGCAACCCCAGAAGAGGCTTAC
GAGGTGGTGGCTATTGGAGGAGAAAGTGGTGTTGGAGGAGAAAGTGGTGGAATTAGAGGGAAATT
GGTGGAGTTAGAGGGAAAGTGGTGGCTATTGGTGGCTATTGGAAGGGAACGTCGGGGCAAGTCGT
CGGGTCCACCAGCCGTGGGAAGTGGGCACACGGATTAGAGCAGGTTTACGACCACCGCCGTGACC
AACCCCACGATGTCGTCAAAAGCAACAGAGCCATTCGGCCACTTTCAGGTGATTTGCGGTGCCAT
GCAAGCCCTGTCCTTGAGCCCGGTAAAAAATACTGAAATAATACCGGAGAAGGCCCGACACTAGG
AGGTCACGGTGGTGCTGTGGCCGGGGTTACTGGGAGAGTGGTGAT
Right flanking sequence: Indices 56716 -- 57215
GTTGTGGTGTGGTGTTGTGGTGGGTGGAAGGTGGATTGATTATGGGTTGGTTGCGAACGTTTCGT
TCAGTTGTTGCTTCTGTTATTGTAGTTATTATCTGATCGCTCAATTCCCTGTTGGGTGCTCGTCA
CATTCCATCTAAGTGCCAATTATCTCGGTGGTGTAGATCTTAACTAAAAGGGCCATCCAATACGG
CACGGCCATTCGTATAGGTGCTCGGCAAATTGACTAGGTGCGCTGCCATCGTCTAGTACACGCAA
CCAATCATCTGGTTACGGGCCAGTCGTTTGGATTTCGCCCGGCTCGGTCAATTGGTCTAGAACAG
GCTAGTATTGTTAGCGCTTAGCTCACCGACACTACATTCCACTCACGATATTCCACTATACTGTA
TTCACTCACTTATTCTCAACCAGACCCACTAATCCACTCCTACTACACTCCTACTACACTCCTAC
TACACTCCTACTATCCACTTCACCTGACTCCAACTGCATCCTCTC
Found at i:57156 original size:11 final size:11
Alignment explanation
Indices: 57140--57183 Score: 88
Period size: 11 Copynumber: 4.0 Consensus size: 11
57130 CCCACTAATC
57140 CACTCCTACTA
1 CACTCCTACTA
57151 CACTCCTACTA
1 CACTCCTACTA
57162 CACTCCTACTA
1 CACTCCTACTA
57173 CACTCCTACTA
1 CACTCCTACTA
57184 TCCACTTCAC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 33 1.00
ACGTcount: A:0.27, C:0.45, G:0.00, T:0.27
Consensus pattern (11 bp):
CACTCCTACTA
Left flanking sequence: Indices 56640 -- 57139
GTGCTGTGGCCGGGGTTACTGGGAGAGTGGTGATGGTAGAGAGAAGATGTAGAGAGAAGAGGTAG
AGAGAAGAGGTGTTGTGGTGTGGTGTTGTGGTGGGTGGAAGGTGGATTGATTATGGGTTGGTTGC
GAACGTTTCGTTCAGTTGTTGCTTCTGTTATTGTAGTTATTATCTGATCGCTCAATTCCCTGTTG
GGTGCTCGTCACATTCCATCTAAGTGCCAATTATCTCGGTGGTGTAGATCTTAACTAAAAGGGCC
ATCCAATACGGCACGGCCATTCGTATAGGTGCTCGGCAAATTGACTAGGTGCGCTGCCATCGTCT
AGTACACGCAACCAATCATCTGGTTACGGGCCAGTCGTTTGGATTTCGCCCGGCTCGGTCAATTG
GTCTAGAACAGGCTAGTATTGTTAGCGCTTAGCTCACCGACACTACATTCCACTCACGATATTCC
ACTATACTGTATTCACTCACTTATTCTCAACCAGACCCACTAATC
Right flanking sequence: Indices 57184 -- 57683
TCCACTTCACCTGACTCCAACTGCATCCTCTCTCCATGCTTTCTGTGTCACAATGTGCCCGTGTC
GATCTTCACCTCTCGCGCCTCCACCCTTCACCTCACCTTCTCTCCTCCACTTTGCCGCCTCCATT
ACCTCACCTCGCAGCGGCTAAATCCCTCACCACCCCACCGGCCTACCTCCTCCCTCTCACCCACC
CCCCTCCCCGTCGCACCTTACCTCCACCATCTCCTCTCTCACACCACCCTACGCGTCTGCTCGTG
TGCTGTCGCGGTGACGTCGCACCGCCTCAAAAATTTTCTATTGTGCGCGGCTAAAAACTACGGCA
TCGTCGCTGGGCTAGTGGACAGTCGGCGGTGCCAAAAAATAACGCGCGTGGTGCGACCCCACCGC
ACCAGCACCAGAAGCACAGTGGCCTGCTCCACAACCCCCACCATCTCCCCTCTGCTGCGCCCACA
AAACCACCAAACAAACCGCCAGCCATCCACTCTGCTCCTTCCCAA
Found at i:57758 original size:9 final size:9
Alignment explanation
Indices: 57744--57781 Score: 60
Period size: 9 Copynumber: 4.2 Consensus size: 9
57734 CTCTCCTTTC
57744 CCTCTCCCT
1 CCTCTCCCT
57753 CCTCTCCCT
1 CCTCTCCCT
57762 CCTCTCCCGT
1 CCTCTCCC-T
57772 CCTC-CCCT
1 CCTCTCCCT
57780 CC
1 CC
57782 CCACCGAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
8 3 0.11
9 20 0.71
10 5 0.18
ACGTcount: A:0.00, C:0.68, G:0.03, T:0.29
Consensus pattern (9 bp):
CCTCTCCCT
Left flanking sequence: Indices 57244 -- 57743
GTGTCGATCTTCACCTCTCGCGCCTCCACCCTTCACCTCACCTTCTCTCCTCCACTTTGCCGCCT
CCATTACCTCACCTCGCAGCGGCTAAATCCCTCACCACCCCACCGGCCTACCTCCTCCCTCTCAC
CCACCCCCCTCCCCGTCGCACCTTACCTCCACCATCTCCTCTCTCACACCACCCTACGCGTCTGC
TCGTGTGCTGTCGCGGTGACGTCGCACCGCCTCAAAAATTTTCTATTGTGCGCGGCTAAAAACTA
CGGCATCGTCGCTGGGCTAGTGGACAGTCGGCGGTGCCAAAAAATAACGCGCGTGGTGCGACCCC
ACCGCACCAGCACCAGAAGCACAGTGGCCTGCTCCACAACCCCCACCATCTCCCCTCTGCTGCGC
CCACAAAACCACCAAACAAACCGCCAGCCATCCACTCTGCTCCTTCCCAAAAAAAACCTCTGCTT
TCCCCACCCTCCCTACCACTGCTCTCCCTGTCCCCCTCTCCTTTC
Right flanking sequence: Indices 57782 -- 58281
CCACCGAATTACACAGCAACGGCGCCCACCCGCCGATATTTTCTGGTTGCGCACCTCGCAAGTAA
ATTTCAGGTCGACGGCGCGGGTACAAATAGCACTGAGTGCGGACGAAAAACAATCTTCACCTCTG
CGCACCCCGGAGCACCCTCGAGCACACCCCCGTTCGAGTCACTGAGCGATGTTGAAGGAATACAA
ACTAGTGGTTGTGGGCGGCGGCGGCGTCGGCAAGCTGGCGTTGACGATCCAGCTCATCCAGCTGC
ACTTTGTCGACGAGTACGACCCCACCATCGAGGACCTGTACCGCAAGCAGTGCACCATCGACGAC
GACCAGGTGTTGCTCGATGTGCTCGACACCGCCGGGCAGGAGGAGTACCTGGCGATGCGCGAGCA
GTACATGCGCACCGGCGAGGGGTTCCTTCTAGTGTACCTGATCAACTCCCGCAACCTGTTGGAGG
AGTTGGCGGCGTTCTACGAGCAGATTTTGCGGGTCAAGGACGCGG
Found at i:57767 original size:43 final size:43
Alignment explanation
Indices: 57690--57781 Score: 102
Period size: 43 Copynumber: 2.2 Consensus size: 43
57680 CCAAAAAAAA
* *
57690 CCTCTGCTTTCCCCACCCTCCCTACCACTGCTCTCCCTGTCC-C
1 CCTCTCCTTTCCCCACCCTCCCTACCACTCCTCTCCC-GTCCTC
*
57733 CCTCTCCTTTCCCTCTCCCTCCTCT-CC-CTCCTCTCCCGTCCTC
1 CCTCTCCTTTCCC-CACCCTCC-CTACCACTCCTCTCCCGTCCTC
57776 CC-CTCC
1 CCTCTCC
57782 CCACCGAATT
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
42 8 0.19
43 24 0.56
44 9 0.21
45 2 0.05
ACGTcount: A:0.03, C:0.62, G:0.04, T:0.30
Consensus pattern (43 bp):
CCTCTCCTTTCCCCACCCTCCCTACCACTCCTCTCCCGTCCTC
Left flanking sequence: Indices 57190 -- 57689
TCACCTGACTCCAACTGCATCCTCTCTCCATGCTTTCTGTGTCACAATGTGCCCGTGTCGATCTT
CACCTCTCGCGCCTCCACCCTTCACCTCACCTTCTCTCCTCCACTTTGCCGCCTCCATTACCTCA
CCTCGCAGCGGCTAAATCCCTCACCACCCCACCGGCCTACCTCCTCCCTCTCACCCACCCCCCTC
CCCGTCGCACCTTACCTCCACCATCTCCTCTCTCACACCACCCTACGCGTCTGCTCGTGTGCTGT
CGCGGTGACGTCGCACCGCCTCAAAAATTTTCTATTGTGCGCGGCTAAAAACTACGGCATCGTCG
CTGGGCTAGTGGACAGTCGGCGGTGCCAAAAAATAACGCGCGTGGTGCGACCCCACCGCACCAGC
ACCAGAAGCACAGTGGCCTGCTCCACAACCCCCACCATCTCCCCTCTGCTGCGCCCACAAAACCA
CCAAACAAACCGCCAGCCATCCACTCTGCTCCTTCCCAAAAAAAA
Right flanking sequence: Indices 57782 -- 58281
CCACCGAATTACACAGCAACGGCGCCCACCCGCCGATATTTTCTGGTTGCGCACCTCGCAAGTAA
ATTTCAGGTCGACGGCGCGGGTACAAATAGCACTGAGTGCGGACGAAAAACAATCTTCACCTCTG
CGCACCCCGGAGCACCCTCGAGCACACCCCCGTTCGAGTCACTGAGCGATGTTGAAGGAATACAA
ACTAGTGGTTGTGGGCGGCGGCGGCGTCGGCAAGCTGGCGTTGACGATCCAGCTCATCCAGCTGC
ACTTTGTCGACGAGTACGACCCCACCATCGAGGACCTGTACCGCAAGCAGTGCACCATCGACGAC
GACCAGGTGTTGCTCGATGTGCTCGACACCGCCGGGCAGGAGGAGTACCTGGCGATGCGCGAGCA
GTACATGCGCACCGGCGAGGGGTTCCTTCTAGTGTACCTGATCAACTCCCGCAACCTGTTGGAGG
AGTTGGCGGCGTTCTACGAGCAGATTTTGCGGGTCAAGGACGCGG
Found at i:58472 original size:3 final size:3
Alignment explanation
Indices: 58466--58504 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
58456 GTGACGACGG
* * *
58466 GGC GGC GGC GGC GGC GGC GGC GCC CGC GGC GGT GGC GGC
1 GGC GGC GGC GGC GGC GGC GGC GGC GGC GGC GGC GGC GGC
58505 CCCGGTGGCG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.00, C:0.36, G:0.62, T:0.03
Consensus pattern (3 bp):
GGC
Left flanking sequence: Indices 57966 -- 58465
AAGGAATACAAACTAGTGGTTGTGGGCGGCGGCGGCGTCGGCAAGCTGGCGTTGACGATCCAGCT
CATCCAGCTGCACTTTGTCGACGAGTACGACCCCACCATCGAGGACCTGTACCGCAAGCAGTGCA
CCATCGACGACGACCAGGTGTTGCTCGATGTGCTCGACACCGCCGGGCAGGAGGAGTACCTGGCG
ATGCGCGAGCAGTACATGCGCACCGGCGAGGGGTTCCTTCTAGTGTACCTGATCAACTCCCGCAA
CCTGTTGGAGGAGTTGGCGGCGTTCTACGAGCAGATTTTGCGGGTCAAGGACGCGGACCTGGTGC
CGGTGCTTGTGGTGGGCAACAAGTGCGACCTCGAGATCGAGCGCCAGGTGCTGTTTGAGGAGGGC
CAGGCGCTCGCCAAGCGGTTCGGGTGCAAGTTTTTGGAGACCCTGGCCAAGCAGCGCATCAACGT
CGAGGAGGCGTTCTTTGACTTGGTGCGGCTGATCCGTGACGACGG
Right flanking sequence: Indices 58505 -- 59004
CCCGGTGGCGGCCCTGCTGGCGGAGCCGGTGCCCGCGGCTGCCCCGCAGGCGCCCCCCGCGGCGG
AGGCCCCCGCGGCGGAGGAGCCCGCGAAGGAGGCGCGCCCCCAGAAGCGCAAGGAGCAGGCGGCG
GCGCCCGCGGCCGAGCCCAAGGAGAAGTCGGGGTGCTGTGTGATTGTCTAGGCGGGTTGAGGCGG
GCGGAGTCCCGGTTAATACTACTGTTTATGTTAAGGCATGGAATTAGAGAATGAGGGAGTGGGAG
GAGTGGATGTGTAGTGTGTGGGTGTGCGTGGTTGTGTAGTGGGTGGGTGTGTGTGGATGTGTAGT
TGGGGTGGATGTGTAGTGTGTGGGTGTGCGTGGTTGTGTAGTTGGGTGGATCTGCTGTGGTGTGG
ATTTACTGTTTGTCTGGCTGGTATATTTGTCTGACTGGGTGATTGTTTCGTTGGTGGTGTGATTG
AGGCTGGTTGATGTCAAGAGTGGGTTGGAATTGTATGGTTGGTGA
Found at i:58515 original size:18 final size:18
Alignment explanation
Indices: 58473--58508 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
58463 CGGGGCGGCG
58473 GCGGCGGCGGCGGCGCCC
1 GCGGCGGCGGCGGCGCCC
*
58491 GCGGCGGTGGCGGC-CCC
1 GCGGCGGCGGCGGCGCCC
58508 G
1 G
58509 GTGGCGGCCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.00, C:0.42, G:0.56, T:0.03
Consensus pattern (18 bp):
GCGGCGGCGGCGGCGCCC
Left flanking sequence: Indices 57973 -- 58472
ACAAACTAGTGGTTGTGGGCGGCGGCGGCGTCGGCAAGCTGGCGTTGACGATCCAGCTCATCCAG
CTGCACTTTGTCGACGAGTACGACCCCACCATCGAGGACCTGTACCGCAAGCAGTGCACCATCGA
CGACGACCAGGTGTTGCTCGATGTGCTCGACACCGCCGGGCAGGAGGAGTACCTGGCGATGCGCG
AGCAGTACATGCGCACCGGCGAGGGGTTCCTTCTAGTGTACCTGATCAACTCCCGCAACCTGTTG
GAGGAGTTGGCGGCGTTCTACGAGCAGATTTTGCGGGTCAAGGACGCGGACCTGGTGCCGGTGCT
TGTGGTGGGCAACAAGTGCGACCTCGAGATCGAGCGCCAGGTGCTGTTTGAGGAGGGCCAGGCGC
TCGCCAAGCGGTTCGGGTGCAAGTTTTTGGAGACCCTGGCCAAGCAGCGCATCAACGTCGAGGAG
GCGTTCTTTGACTTGGTGCGGCTGATCCGTGACGACGGGGCGGCG
Right flanking sequence: Indices 58509 -- 59008
GTGGCGGCCCTGCTGGCGGAGCCGGTGCCCGCGGCTGCCCCGCAGGCGCCCCCCGCGGCGGAGGC
CCCCGCGGCGGAGGAGCCCGCGAAGGAGGCGCGCCCCCAGAAGCGCAAGGAGCAGGCGGCGGCGC
CCGCGGCCGAGCCCAAGGAGAAGTCGGGGTGCTGTGTGATTGTCTAGGCGGGTTGAGGCGGGCGG
AGTCCCGGTTAATACTACTGTTTATGTTAAGGCATGGAATTAGAGAATGAGGGAGTGGGAGGAGT
GGATGTGTAGTGTGTGGGTGTGCGTGGTTGTGTAGTGGGTGGGTGTGTGTGGATGTGTAGTTGGG
GTGGATGTGTAGTGTGTGGGTGTGCGTGGTTGTGTAGTTGGGTGGATCTGCTGTGGTGTGGATTT
ACTGTTTGTCTGGCTGGTATATTTGTCTGACTGGGTGATTGTTTCGTTGGTGGTGTGATTGAGGC
TGGTTGATGTCAAGAGTGGGTTGGAATTGTATGGTTGGTGAGTGT
Found at i:58578 original size:15 final size:15
Alignment explanation
Indices: 58558--58587 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
58548 CCGCAGGCGC
58558 CCCCCGCGGCGGAGG
1 CCCCCGCGGCGGAGG
58573 CCCCCGCGGCGGAGG
1 CCCCCGCGGCGGAGG
58588 AGCCCGCGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.07, C:0.47, G:0.47, T:0.00
Consensus pattern (15 bp):
CCCCCGCGGCGGAGG
Left flanking sequence: Indices 58058 -- 58557
CGACCCCACCATCGAGGACCTGTACCGCAAGCAGTGCACCATCGACGACGACCAGGTGTTGCTCG
ATGTGCTCGACACCGCCGGGCAGGAGGAGTACCTGGCGATGCGCGAGCAGTACATGCGCACCGGC
GAGGGGTTCCTTCTAGTGTACCTGATCAACTCCCGCAACCTGTTGGAGGAGTTGGCGGCGTTCTA
CGAGCAGATTTTGCGGGTCAAGGACGCGGACCTGGTGCCGGTGCTTGTGGTGGGCAACAAGTGCG
ACCTCGAGATCGAGCGCCAGGTGCTGTTTGAGGAGGGCCAGGCGCTCGCCAAGCGGTTCGGGTGC
AAGTTTTTGGAGACCCTGGCCAAGCAGCGCATCAACGTCGAGGAGGCGTTCTTTGACTTGGTGCG
GCTGATCCGTGACGACGGGGCGGCGGCGGCGGCGGCGGCGCCCGCGGCGGTGGCGGCCCCGGTGG
CGGCCCTGCTGGCGGAGCCGGTGCCCGCGGCTGCCCCGCAGGCGC
Right flanking sequence: Indices 58588 -- 59087
AGCCCGCGAAGGAGGCGCGCCCCCAGAAGCGCAAGGAGCAGGCGGCGGCGCCCGCGGCCGAGCCC
AAGGAGAAGTCGGGGTGCTGTGTGATTGTCTAGGCGGGTTGAGGCGGGCGGAGTCCCGGTTAATA
CTACTGTTTATGTTAAGGCATGGAATTAGAGAATGAGGGAGTGGGAGGAGTGGATGTGTAGTGTG
TGGGTGTGCGTGGTTGTGTAGTGGGTGGGTGTGTGTGGATGTGTAGTTGGGGTGGATGTGTAGTG
TGTGGGTGTGCGTGGTTGTGTAGTTGGGTGGATCTGCTGTGGTGTGGATTTACTGTTTGTCTGGC
TGGTATATTTGTCTGACTGGGTGATTGTTTCGTTGGTGGTGTGATTGAGGCTGGTTGATGTCAAG
AGTGGGTTGGAATTGTATGGTTGGTGAGTGTGGGGTGGAGTCATTACCGCAGCTGGTGTCCTCTG
GGTGATATGTTAGTAGCCTTCCATTGGTTCTACCACTGTTAACAC
Found at i:58593 original size:15 final size:15
Alignment explanation
Indices: 58559--58595 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
58549 CGCAGGCGCC
*
58559 CCCCGCGGCGGAGGC
1 CCCCGCGGCGGAGGA
58574 CCCCGCGGCGGAGGA
1 CCCCGCGGCGGAGGA
*
58589 GCCCGCG
1 CCCCGCG
58596 AAGGAGGCGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.08, C:0.46, G:0.46, T:0.00
Consensus pattern (15 bp):
CCCCGCGGCGGAGGA
Left flanking sequence: Indices 58059 -- 58558
GACCCCACCATCGAGGACCTGTACCGCAAGCAGTGCACCATCGACGACGACCAGGTGTTGCTCGA
TGTGCTCGACACCGCCGGGCAGGAGGAGTACCTGGCGATGCGCGAGCAGTACATGCGCACCGGCG
AGGGGTTCCTTCTAGTGTACCTGATCAACTCCCGCAACCTGTTGGAGGAGTTGGCGGCGTTCTAC
GAGCAGATTTTGCGGGTCAAGGACGCGGACCTGGTGCCGGTGCTTGTGGTGGGCAACAAGTGCGA
CCTCGAGATCGAGCGCCAGGTGCTGTTTGAGGAGGGCCAGGCGCTCGCCAAGCGGTTCGGGTGCA
AGTTTTTGGAGACCCTGGCCAAGCAGCGCATCAACGTCGAGGAGGCGTTCTTTGACTTGGTGCGG
CTGATCCGTGACGACGGGGCGGCGGCGGCGGCGGCGGCGCCCGCGGCGGTGGCGGCCCCGGTGGC
GGCCCTGCTGGCGGAGCCGGTGCCCGCGGCTGCCCCGCAGGCGCC
Right flanking sequence: Indices 58596 -- 59095
AAGGAGGCGCGCCCCCAGAAGCGCAAGGAGCAGGCGGCGGCGCCCGCGGCCGAGCCCAAGGAGAA
GTCGGGGTGCTGTGTGATTGTCTAGGCGGGTTGAGGCGGGCGGAGTCCCGGTTAATACTACTGTT
TATGTTAAGGCATGGAATTAGAGAATGAGGGAGTGGGAGGAGTGGATGTGTAGTGTGTGGGTGTG
CGTGGTTGTGTAGTGGGTGGGTGTGTGTGGATGTGTAGTTGGGGTGGATGTGTAGTGTGTGGGTG
TGCGTGGTTGTGTAGTTGGGTGGATCTGCTGTGGTGTGGATTTACTGTTTGTCTGGCTGGTATAT
TTGTCTGACTGGGTGATTGTTTCGTTGGTGGTGTGATTGAGGCTGGTTGATGTCAAGAGTGGGTT
GGAATTGTATGGTTGGTGAGTGTGGGGTGGAGTCATTACCGCAGCTGGTGTCCTCTGGGTGATAT
GTTAGTAGCCTTCCATTGGTTCTACCACTGTTAACACTTCAATTG
Found at i:58800 original size:25 final size:25
Alignment explanation
Indices: 58767--58871 Score: 118
Period size: 25 Copynumber: 4.5 Consensus size: 25
58757 AGTGGGAGGA
58767 GTGGATGTGTAGTGTGTGGGTGTGC
1 GTGGATGTGTAGTGTGTGGGTGTGC
* * *
58792 GTGGTTGTGTAGTGGGTGGGTGTGT
1 GTGGATGTGTAGTGTGTGGGTGTGC
58817 GTGGATGTGTA--GT-T--G-G-G-
1 GTGGATGTGTAGTGTGTGGGTGTGC
58834 GTGGATGTGTAGTGTGTGGGTGTGC
1 GTGGATGTGTAGTGTGTGGGTGTGC
*
58859 GTGGTTGTGTAGT
1 GTGGATGTGTAGT
58872 TGGGTGGATC
Statistics
Matches: 66, Mismatches: 6, Indels: 16
0.75 0.07 0.18
Matches are distributed among these distances:
17 11 0.17
18 1 0.02
19 3 0.05
20 2 0.03
22 2 0.03
23 2 0.03
24 1 0.02
25 44 0.67
ACGTcount: A:0.08, C:0.02, G:0.52, T:0.38
Consensus pattern (25 bp):
GTGGATGTGTAGTGTGTGGGTGTGC
Left flanking sequence: Indices 58267 -- 58766
GGGTCAAGGACGCGGACCTGGTGCCGGTGCTTGTGGTGGGCAACAAGTGCGACCTCGAGATCGAG
CGCCAGGTGCTGTTTGAGGAGGGCCAGGCGCTCGCCAAGCGGTTCGGGTGCAAGTTTTTGGAGAC
CCTGGCCAAGCAGCGCATCAACGTCGAGGAGGCGTTCTTTGACTTGGTGCGGCTGATCCGTGACG
ACGGGGCGGCGGCGGCGGCGGCGGCGCCCGCGGCGGTGGCGGCCCCGGTGGCGGCCCTGCTGGCG
GAGCCGGTGCCCGCGGCTGCCCCGCAGGCGCCCCCCGCGGCGGAGGCCCCCGCGGCGGAGGAGCC
CGCGAAGGAGGCGCGCCCCCAGAAGCGCAAGGAGCAGGCGGCGGCGCCCGCGGCCGAGCCCAAGG
AGAAGTCGGGGTGCTGTGTGATTGTCTAGGCGGGTTGAGGCGGGCGGAGTCCCGGTTAATACTAC
TGTTTATGTTAAGGCATGGAATTAGAGAATGAGGGAGTGGGAGGA
Right flanking sequence: Indices 58872 -- 59371
TGGGTGGATCTGCTGTGGTGTGGATTTACTGTTTGTCTGGCTGGTATATTTGTCTGACTGGGTGA
TTGTTTCGTTGGTGGTGTGATTGAGGCTGGTTGATGTCAAGAGTGGGTTGGAATTGTATGGTTGG
TGAGTGTGGGGTGGAGTCATTACCGCAGCTGGTGTCCTCTGGGTGATATGTTAGTAGCCTTCCAT
TGGTTCTACCACTGTTAACACTTCAATTGTACCCTTGCTTTTACTCTCTTAACACGTTCAATTGC
ACTGTTCCACTCACCGTTACTATTATTTGACGTTTATCGTGCTACCTTGACACTCCTAATTTGAC
ATCTCTACCTTGACACCCCTACCTGACACCCCTACCTGACACTCCACCTGACACTACGATTGACA
CTACTACCTGACACCCTACCTGACACCGTTCCTTGACACGTTCCTCAACGTTGACACCTTCGACA
ATGCGACAATGTGTTGACAGGTGTTGACAGGTGTTGACACTGAGC
Found at i:58843 original size:42 final size:41
Alignment explanation
Indices: 58792--58880 Score: 133
Period size: 42 Copynumber: 2.1 Consensus size: 41
58782 GTGGGTGTGC
* *
58792 GTGGTTGTGTAGTGGGTGGGTGTGTGTGGATGTGTAGTTGGG
1 GTGGATGTGTAGTGGGTGGGTGTGCGTGGATGTGTAGTT-GG
* *
58834 GTGGATGTGTAGTGTGTGGGTGTGCGTGGTTGTGTAGTTGG
1 GTGGATGTGTAGTGGGTGGGTGTGCGTGGATGTGTAGTTGG
58875 GTGGAT
1 GTGGAT
58881 CTGCTGTGGT
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
41 8 0.19
42 35 0.81
ACGTcount: A:0.08, C:0.01, G:0.53, T:0.38
Consensus pattern (41 bp):
GTGGATGTGTAGTGGGTGGGTGTGCGTGGATGTGTAGTTGG
Left flanking sequence: Indices 58292 -- 58791
GGTGCTTGTGGTGGGCAACAAGTGCGACCTCGAGATCGAGCGCCAGGTGCTGTTTGAGGAGGGCC
AGGCGCTCGCCAAGCGGTTCGGGTGCAAGTTTTTGGAGACCCTGGCCAAGCAGCGCATCAACGTC
GAGGAGGCGTTCTTTGACTTGGTGCGGCTGATCCGTGACGACGGGGCGGCGGCGGCGGCGGCGGC
GCCCGCGGCGGTGGCGGCCCCGGTGGCGGCCCTGCTGGCGGAGCCGGTGCCCGCGGCTGCCCCGC
AGGCGCCCCCCGCGGCGGAGGCCCCCGCGGCGGAGGAGCCCGCGAAGGAGGCGCGCCCCCAGAAG
CGCAAGGAGCAGGCGGCGGCGCCCGCGGCCGAGCCCAAGGAGAAGTCGGGGTGCTGTGTGATTGT
CTAGGCGGGTTGAGGCGGGCGGAGTCCCGGTTAATACTACTGTTTATGTTAAGGCATGGAATTAG
AGAATGAGGGAGTGGGAGGAGTGGATGTGTAGTGTGTGGGTGTGC
Right flanking sequence: Indices 58881 -- 59380
CTGCTGTGGTGTGGATTTACTGTTTGTCTGGCTGGTATATTTGTCTGACTGGGTGATTGTTTCGT
TGGTGGTGTGATTGAGGCTGGTTGATGTCAAGAGTGGGTTGGAATTGTATGGTTGGTGAGTGTGG
GGTGGAGTCATTACCGCAGCTGGTGTCCTCTGGGTGATATGTTAGTAGCCTTCCATTGGTTCTAC
CACTGTTAACACTTCAATTGTACCCTTGCTTTTACTCTCTTAACACGTTCAATTGCACTGTTCCA
CTCACCGTTACTATTATTTGACGTTTATCGTGCTACCTTGACACTCCTAATTTGACATCTCTACC
TTGACACCCCTACCTGACACCCCTACCTGACACTCCACCTGACACTACGATTGACACTACTACCT
GACACCCTACCTGACACCGTTCCTTGACACGTTCCTCAACGTTGACACCTTCGACAATGCGACAA
TGTGTTGACAGGTGTTGACAGGTGTTGACACTGAGCACATTAGAC
Found at i:58893 original size:42 final size:43
Alignment explanation
Indices: 58799--58894 Score: 128
Period size: 42 Copynumber: 2.3 Consensus size: 43
58789 TGCGTGGTTG
* *
58799 TGTAGTGG-GTGGGTGTGTGTGGATGTGTAGTTGGGGTGGATG
1 TGTAGTGGTGTGGGTGTGCGTGGATGTGTAGTTGGGGTGGATC
*
58841 TGTAGT-GTGTGGGTGTGCGTGGTTGTGTAGTT-GGGTGGATC
1 TGTAGTGGTGTGGGTGTGCGTGGATGTGTAGTTGGGGTGGATC
58882 TGCT-GTGGTGTGG
1 TG-TAGTGGTGTGG
58895 ATTTACTGTT
Statistics
Matches: 48, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
41 13 0.27
42 35 0.73
ACGTcount: A:0.07, C:0.03, G:0.52, T:0.38
Consensus pattern (43 bp):
TGTAGTGGTGTGGGTGTGCGTGGATGTGTAGTTGGGGTGGATC
Left flanking sequence: Indices 58299 -- 58798
GTGGTGGGCAACAAGTGCGACCTCGAGATCGAGCGCCAGGTGCTGTTTGAGGAGGGCCAGGCGCT
CGCCAAGCGGTTCGGGTGCAAGTTTTTGGAGACCCTGGCCAAGCAGCGCATCAACGTCGAGGAGG
CGTTCTTTGACTTGGTGCGGCTGATCCGTGACGACGGGGCGGCGGCGGCGGCGGCGGCGCCCGCG
GCGGTGGCGGCCCCGGTGGCGGCCCTGCTGGCGGAGCCGGTGCCCGCGGCTGCCCCGCAGGCGCC
CCCCGCGGCGGAGGCCCCCGCGGCGGAGGAGCCCGCGAAGGAGGCGCGCCCCCAGAAGCGCAAGG
AGCAGGCGGCGGCGCCCGCGGCCGAGCCCAAGGAGAAGTCGGGGTGCTGTGTGATTGTCTAGGCG
GGTTGAGGCGGGCGGAGTCCCGGTTAATACTACTGTTTATGTTAAGGCATGGAATTAGAGAATGA
GGGAGTGGGAGGAGTGGATGTGTAGTGTGTGGGTGTGCGTGGTTG
Right flanking sequence: Indices 58895 -- 59394
ATTTACTGTTTGTCTGGCTGGTATATTTGTCTGACTGGGTGATTGTTTCGTTGGTGGTGTGATTG
AGGCTGGTTGATGTCAAGAGTGGGTTGGAATTGTATGGTTGGTGAGTGTGGGGTGGAGTCATTAC
CGCAGCTGGTGTCCTCTGGGTGATATGTTAGTAGCCTTCCATTGGTTCTACCACTGTTAACACTT
CAATTGTACCCTTGCTTTTACTCTCTTAACACGTTCAATTGCACTGTTCCACTCACCGTTACTAT
TATTTGACGTTTATCGTGCTACCTTGACACTCCTAATTTGACATCTCTACCTTGACACCCCTACC
TGACACCCCTACCTGACACTCCACCTGACACTACGATTGACACTACTACCTGACACCCTACCTGA
CACCGTTCCTTGACACGTTCCTCAACGTTGACACCTTCGACAATGCGACAATGTGTTGACAGGTG
TTGACAGGTGTTGACACTGAGCACATTAGACTGAGCACATTACAT
Found at i:59225 original size:13 final size:13
Alignment explanation
Indices: 59201--59288 Score: 83
Period size: 12 Copynumber: 6.9 Consensus size: 13
59191 TTTGACATCT
59201 CTACCTTGACACCC
1 CTACC-TGACACCC
59215 CTACCTGACACCC
1 CTACCTGACACCC
*
59228 CTACCTGACACTC
1 CTACCTGACACCC
**
59241 C-ACCTGACACTA
1 CTACCTGACACCC
* * **
59253 CGA-TTGACACTA
1 CTACCTGACACCC
59265 CTACCTGACA-CC
1 CTACCTGACACCC
59277 CTACCTGACACC
1 CTACCTGACACC
59289 GTTCCTTGAC
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
12 31 0.48
13 28 0.44
14 5 0.08
ACGTcount: A:0.26, C:0.45, G:0.09, T:0.19
Consensus pattern (13 bp):
CTACCTGACACCC
Left flanking sequence: Indices 58701 -- 59200
CGGAGTCCCGGTTAATACTACTGTTTATGTTAAGGCATGGAATTAGAGAATGAGGGAGTGGGAGG
AGTGGATGTGTAGTGTGTGGGTGTGCGTGGTTGTGTAGTGGGTGGGTGTGTGTGGATGTGTAGTT
GGGGTGGATGTGTAGTGTGTGGGTGTGCGTGGTTGTGTAGTTGGGTGGATCTGCTGTGGTGTGGA
TTTACTGTTTGTCTGGCTGGTATATTTGTCTGACTGGGTGATTGTTTCGTTGGTGGTGTGATTGA
GGCTGGTTGATGTCAAGAGTGGGTTGGAATTGTATGGTTGGTGAGTGTGGGGTGGAGTCATTACC
GCAGCTGGTGTCCTCTGGGTGATATGTTAGTAGCCTTCCATTGGTTCTACCACTGTTAACACTTC
AATTGTACCCTTGCTTTTACTCTCTTAACACGTTCAATTGCACTGTTCCACTCACCGTTACTATT
ATTTGACGTTTATCGTGCTACCTTGACACTCCTAATTTGACATCT
Right flanking sequence: Indices 59289 -- 59788
GTTCCTTGACACGTTCCTCAACGTTGACACCTTCGACAATGCGACAATGTGTTGACAGGTGTTGA
CAGGTGTTGACACTGAGCACATTAGACTGAGCACATTACATTGACCACATTAGGAGCATTAGACT
GGGCAATTAGACACTGCTGCATCTCACCACTCCACACACAAACTGTTAACACCGTGTCCTATTCC
ACGCAATCGTATCTCATTCCTACACCGTGCCAGATCGTCCCTTTGTTCTTCACGCAATTGCTCCC
ACGCCGTGTTGGGTCAATGCATCGACCCCCATGCATTGGTGGGTGCGTGGTGCTGCGGGAGGTGC
GGTGTCCTGCTGGGGCCATGCGGGCGGTGATGCGCCCGTGCGGTGCGGTGCTGGTGCCAGGACCC
GATGCGACGGCGAGCAAATTGCCCCCCGGGACTGGCAGGTGCTGTGGCCGTCGTAGCTCGTGGCG
AAACAACGGGTAGGTGGACCCGGTGGTTGCCGCAGGCGGACAATG
Found at i:59247 original size:12 final size:12
Alignment explanation
Indices: 59193--59287 Score: 59
Period size: 13 Copynumber: 7.5 Consensus size: 12
59183 ACTCCTAATT
*
59193 TGACATCTCTACC
1 TGACA-CTCCACC
*
59206 TTGACACCCCTACC
1 -TGACACTCC-ACC
*
59220 TGACACCCCTACC
1 TGACACTCC-ACC
59233 TGACACTCCACC
1 TGACACTCCACC
* *
59245 TGACACTACGA-T
1 TGACACT-CCACC
*
59257 TGACACTACTACC
1 TGACACT-CCACC
59270 TGACAC-CCTACC
1 TGACACTCC-ACC
59282 TGACAC
1 TGACAC
59288 CGTTCCTTGA
Statistics
Matches: 69, Mismatches: 8, Indels: 10
0.79 0.09 0.11
Matches are distributed among these distances:
11 1 0.01
12 29 0.42
13 31 0.45
14 8 0.12
ACGTcount: A:0.26, C:0.43, G:0.09, T:0.21
Consensus pattern (12 bp):
TGACACTCCACC
Left flanking sequence: Indices 58693 -- 59192
GAGGCGGGCGGAGTCCCGGTTAATACTACTGTTTATGTTAAGGCATGGAATTAGAGAATGAGGGA
GTGGGAGGAGTGGATGTGTAGTGTGTGGGTGTGCGTGGTTGTGTAGTGGGTGGGTGTGTGTGGAT
GTGTAGTTGGGGTGGATGTGTAGTGTGTGGGTGTGCGTGGTTGTGTAGTTGGGTGGATCTGCTGT
GGTGTGGATTTACTGTTTGTCTGGCTGGTATATTTGTCTGACTGGGTGATTGTTTCGTTGGTGGT
GTGATTGAGGCTGGTTGATGTCAAGAGTGGGTTGGAATTGTATGGTTGGTGAGTGTGGGGTGGAG
TCATTACCGCAGCTGGTGTCCTCTGGGTGATATGTTAGTAGCCTTCCATTGGTTCTACCACTGTT
AACACTTCAATTGTACCCTTGCTTTTACTCTCTTAACACGTTCAATTGCACTGTTCCACTCACCG
TTACTATTATTTGACGTTTATCGTGCTACCTTGACACTCCTAATT
Right flanking sequence: Indices 59288 -- 59787
CGTTCCTTGACACGTTCCTCAACGTTGACACCTTCGACAATGCGACAATGTGTTGACAGGTGTTG
ACAGGTGTTGACACTGAGCACATTAGACTGAGCACATTACATTGACCACATTAGGAGCATTAGAC
TGGGCAATTAGACACTGCTGCATCTCACCACTCCACACACAAACTGTTAACACCGTGTCCTATTC
CACGCAATCGTATCTCATTCCTACACCGTGCCAGATCGTCCCTTTGTTCTTCACGCAATTGCTCC
CACGCCGTGTTGGGTCAATGCATCGACCCCCATGCATTGGTGGGTGCGTGGTGCTGCGGGAGGTG
CGGTGTCCTGCTGGGGCCATGCGGGCGGTGATGCGCCCGTGCGGTGCGGTGCTGGTGCCAGGACC
CGATGCGACGGCGAGCAAATTGCCCCCCGGGACTGGCAGGTGCTGTGGCCGTCGTAGCTCGTGGC
GAAACAACGGGTAGGTGGACCCGGTGGTTGCCGCAGGCGGACAAT
Found at i:59352 original size:10 final size:10
Alignment explanation
Indices: 59337--59365 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
59327 ATGCGACAAT
59337 GTGTTGACAG
1 GTGTTGACAG
59347 GTGTTGACAG
1 GTGTTGACAG
59357 GTGTTGACA
1 GTGTTGACA
59366 CTGAGCACAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.21, C:0.10, G:0.38, T:0.31
Consensus pattern (10 bp):
GTGTTGACAG
Left flanking sequence: Indices 58837 -- 59336
GATGTGTAGTGTGTGGGTGTGCGTGGTTGTGTAGTTGGGTGGATCTGCTGTGGTGTGGATTTACT
GTTTGTCTGGCTGGTATATTTGTCTGACTGGGTGATTGTTTCGTTGGTGGTGTGATTGAGGCTGG
TTGATGTCAAGAGTGGGTTGGAATTGTATGGTTGGTGAGTGTGGGGTGGAGTCATTACCGCAGCT
GGTGTCCTCTGGGTGATATGTTAGTAGCCTTCCATTGGTTCTACCACTGTTAACACTTCAATTGT
ACCCTTGCTTTTACTCTCTTAACACGTTCAATTGCACTGTTCCACTCACCGTTACTATTATTTGA
CGTTTATCGTGCTACCTTGACACTCCTAATTTGACATCTCTACCTTGACACCCCTACCTGACACC
CCTACCTGACACTCCACCTGACACTACGATTGACACTACTACCTGACACCCTACCTGACACCGTT
CCTTGACACGTTCCTCAACGTTGACACCTTCGACAATGCGACAAT
Right flanking sequence: Indices 59366 -- 59865
CTGAGCACATTAGACTGAGCACATTACATTGACCACATTAGGAGCATTAGACTGGGCAATTAGAC
ACTGCTGCATCTCACCACTCCACACACAAACTGTTAACACCGTGTCCTATTCCACGCAATCGTAT
CTCATTCCTACACCGTGCCAGATCGTCCCTTTGTTCTTCACGCAATTGCTCCCACGCCGTGTTGG
GTCAATGCATCGACCCCCATGCATTGGTGGGTGCGTGGTGCTGCGGGAGGTGCGGTGTCCTGCTG
GGGCCATGCGGGCGGTGATGCGCCCGTGCGGTGCGGTGCTGGTGCCAGGACCCGATGCGACGGCG
AGCAAATTGCCCCCCGGGACTGGCAGGTGCTGTGGCCGTCGTAGCTCGTGGCGAAACAACGGGTA
GGTGGACCCGGTGGTTGCCGCAGGCGGACAATGGGCCTGCCTCAGCATTTCTTGGCCCGAGATCC
TTCCTGTGGCTCGACAATCCGTCGAGGATCGGGGCAATTGCGTCG
Found at i:59384 original size:14 final size:14
Alignment explanation
Indices: 59365--59406 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
59355 AGGTGTTGAC
59365 ACTGAGCACATTAG
1 ACTGAGCACATTAG
*
59379 ACTGAGCACATTAC
1 ACTGAGCACATTAG
* *
59393 ATTGACCACATTAG
1 ACTGAGCACATTAG
59407 GAGCATTAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.24
Consensus pattern (14 bp):
ACTGAGCACATTAG
Left flanking sequence: Indices 58865 -- 59364
GTGTAGTTGGGTGGATCTGCTGTGGTGTGGATTTACTGTTTGTCTGGCTGGTATATTTGTCTGAC
TGGGTGATTGTTTCGTTGGTGGTGTGATTGAGGCTGGTTGATGTCAAGAGTGGGTTGGAATTGTA
TGGTTGGTGAGTGTGGGGTGGAGTCATTACCGCAGCTGGTGTCCTCTGGGTGATATGTTAGTAGC
CTTCCATTGGTTCTACCACTGTTAACACTTCAATTGTACCCTTGCTTTTACTCTCTTAACACGTT
CAATTGCACTGTTCCACTCACCGTTACTATTATTTGACGTTTATCGTGCTACCTTGACACTCCTA
ATTTGACATCTCTACCTTGACACCCCTACCTGACACCCCTACCTGACACTCCACCTGACACTACG
ATTGACACTACTACCTGACACCCTACCTGACACCGTTCCTTGACACGTTCCTCAACGTTGACACC
TTCGACAATGCGACAATGTGTTGACAGGTGTTGACAGGTGTTGAC
Right flanking sequence: Indices 59407 -- 59906
GAGCATTAGACTGGGCAATTAGACACTGCTGCATCTCACCACTCCACACACAAACTGTTAACACC
GTGTCCTATTCCACGCAATCGTATCTCATTCCTACACCGTGCCAGATCGTCCCTTTGTTCTTCAC
GCAATTGCTCCCACGCCGTGTTGGGTCAATGCATCGACCCCCATGCATTGGTGGGTGCGTGGTGC
TGCGGGAGGTGCGGTGTCCTGCTGGGGCCATGCGGGCGGTGATGCGCCCGTGCGGTGCGGTGCTG
GTGCCAGGACCCGATGCGACGGCGAGCAAATTGCCCCCCGGGACTGGCAGGTGCTGTGGCCGTCG
TAGCTCGTGGCGAAACAACGGGTAGGTGGACCCGGTGGTTGCCGCAGGCGGACAATGGGCCTGCC
TCAGCATTTCTTGGCCCGAGATCCTTCCTGTGGCTCGACAATCCGTCGAGGATCGGGGCAATTGC
GTCGGAGAACCGGCCAGTAGCACGGACAGCGTCCCGTCTCCGCTC
Found at i:60525 original size:13 final size:13
Alignment explanation
Indices: 60507--60531 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
60497 AGCACGGTCT
60507 AGCACGAAGCACA
1 AGCACGAAGCACA
60520 AGCACGAAGCAC
1 AGCACGAAGCAC
60532 GCAAGCGTGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.44, C:0.32, G:0.24, T:0.00
Consensus pattern (13 bp):
AGCACGAAGCACA
Left flanking sequence: Indices 60007 -- 60506
CTGCACCGACAGCCCGGCTCCAACGCCTCCCCACGCCACCCACGGCAGGGAAAGGGTCTCCGAGC
TATTGTGGTGGCGCCACGAAGCTTGGCGCTGGCCGGGTCGACCTCTACATTCCGACGCACCGGGC
GATGCTCCGGACGCACCCGGTGCATGAGGTCCCGTCATTGGCTGGCGCTAAGCCATGCCCCAGCG
CAGGAAGAGGGGGGTATGGGGGGTCACTGACGCTTGGGTGGTGTCTGCTGTGTGGTGTCTGCTAT
TGTTCTTTGTTGTGTTGTGGGTTGGTTGCTATTTTTAGTACCTCGCACTTACCCCGGTGTTATTG
GCCCGTTTCACGGTGATTCACCTCCGGACCAACCCCGGCACAGCAAACGGACACGTTGGTCCGTG
CTGTGGCCACCTGGCACCCCATTGGGTGTGGTGCGGGGACTGGGTGGGGCTGCCCGAATAAGCTT
TCGCTTGTTACTGCCCAGTCCTTGGCCAACATTGGAGCACGGTCT
Right flanking sequence: Indices 60532 -- 61031
GCAAGCGTGAAGCTAGCGTGAAGCATGCTAGCGTGTGGGGTAGGCTGTGCATCAGCAGCGAAGGC
GTGCACCAGCACTACCTCGAGGTAGGGCCGTGAAAGCGGGGAGATGTAGGTGGGAGCGGGCCAGG
TGCTACAGTGAGGCCTGGGTGCTACAGTGGGGCCTGGGTGCTACGCAGTGGGCCTGAAAAAAGCA
GCGGAGTCTCGCGTACCCGATACACACCCAGGGACATGTGAATTTGGCAACGGACAGCTGCCAGA
ATCAGCTGTTTCCACCCTGTAGACTTCTGTACCTTTTCTTTTGATTATGTCCAGTATTATCTACC
GCCATGCAAAGCCCCGAAAATACGCCAAGAACTAGTGCCTCGTGCTACCGCCATCTGTAGGGTTG
AGACGATCCTGTGATTTTCCTGGGCCTCTCAGGCTAGTGCACCCGGTAGGGCGGTGTGCAACATG
TGGGCTAAAAAATACGCCTGCAAGGAATACGTCAGGCGAGGAGAT
Found at i:60684 original size:19 final size:19
Alignment explanation
Indices: 60660--60705 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
60650 GAGCGGGCCA
60660 GGTGCTACAGTGAGGCCTG
1 GGTGCTACAGTGAGGCCTG
*
60679 GGTGCTACAGTGGGGCCTG
1 GGTGCTACAGTGAGGCCTG
60698 GGTGCTAC
1 GGTGCTAC
60706 GCAGTGGGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.13, C:0.22, G:0.43, T:0.22
Consensus pattern (19 bp):
GGTGCTACAGTGAGGCCTG
Left flanking sequence: Indices 60160 -- 60659
ATGAGGTCCCGTCATTGGCTGGCGCTAAGCCATGCCCCAGCGCAGGAAGAGGGGGGTATGGGGGG
TCACTGACGCTTGGGTGGTGTCTGCTGTGTGGTGTCTGCTATTGTTCTTTGTTGTGTTGTGGGTT
GGTTGCTATTTTTAGTACCTCGCACTTACCCCGGTGTTATTGGCCCGTTTCACGGTGATTCACCT
CCGGACCAACCCCGGCACAGCAAACGGACACGTTGGTCCGTGCTGTGGCCACCTGGCACCCCATT
GGGTGTGGTGCGGGGACTGGGTGGGGCTGCCCGAATAAGCTTTCGCTTGTTACTGCCCAGTCCTT
GGCCAACATTGGAGCACGGTCTAGCACGAAGCACAAGCACGAAGCACGCAAGCGTGAAGCTAGCG
TGAAGCATGCTAGCGTGTGGGGTAGGCTGTGCATCAGCAGCGAAGGCGTGCACCAGCACTACCTC
GAGGTAGGGCCGTGAAAGCGGGGAGATGTAGGTGGGAGCGGGCCA
Right flanking sequence: Indices 60706 -- 61205
GCAGTGGGCCTGAAAAAAGCAGCGGAGTCTCGCGTACCCGATACACACCCAGGGACATGTGAATT
TGGCAACGGACAGCTGCCAGAATCAGCTGTTTCCACCCTGTAGACTTCTGTACCTTTTCTTTTGA
TTATGTCCAGTATTATCTACCGCCATGCAAAGCCCCGAAAATACGCCAAGAACTAGTGCCTCGTG
CTACCGCCATCTGTAGGGTTGAGACGATCCTGTGATTTTCCTGGGCCTCTCAGGCTAGTGCACCC
GGTAGGGCGGTGTGCAACATGTGGGCTAAAAAATACGCCTGCAAGGAATACGTCAGGCGAGGAGA
TTGCTTCTTCAAGCGAGGGGGACGGGGTAGGGTGCTAGTGGTAGCGGGGGGTGTTTTTGTGTGTG
GCTGGGTTGCTGGTGGAGCCCGGTGGCTTTCGGTGGGTGGCTTTCTTTGCGCCAGGTTCCGGAGA
TCCACCCGTATTCCATGCATGAGCGGAACCGGCCGTGGAAGCTCG
Found at i:60716 original size:20 final size:18
Alignment explanation
Indices: 60660--60717 Score: 80
Period size: 19 Copynumber: 3.0 Consensus size: 18
60650 GAGCGGGCCA
60660 GGTGCTACAGTGAGGCCTG
1 GGTGCTACAGTG-GGCCTG
60679 GGTGCTACAGTGGGGCCTG
1 GGTGCTACAGT-GGGCCTG
60698 GGTGCTACGCAGTGGGCCTG
1 GGTGCTA--CAGTGGGCCTG
60718 AAAAAAGCAG
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
19 24 0.67
20 8 0.22
21 4 0.11
ACGTcount: A:0.12, C:0.22, G:0.45, T:0.21
Consensus pattern (18 bp):
GGTGCTACAGTGGGCCTG
Left flanking sequence: Indices 60160 -- 60659
ATGAGGTCCCGTCATTGGCTGGCGCTAAGCCATGCCCCAGCGCAGGAAGAGGGGGGTATGGGGGG
TCACTGACGCTTGGGTGGTGTCTGCTGTGTGGTGTCTGCTATTGTTCTTTGTTGTGTTGTGGGTT
GGTTGCTATTTTTAGTACCTCGCACTTACCCCGGTGTTATTGGCCCGTTTCACGGTGATTCACCT
CCGGACCAACCCCGGCACAGCAAACGGACACGTTGGTCCGTGCTGTGGCCACCTGGCACCCCATT
GGGTGTGGTGCGGGGACTGGGTGGGGCTGCCCGAATAAGCTTTCGCTTGTTACTGCCCAGTCCTT
GGCCAACATTGGAGCACGGTCTAGCACGAAGCACAAGCACGAAGCACGCAAGCGTGAAGCTAGCG
TGAAGCATGCTAGCGTGTGGGGTAGGCTGTGCATCAGCAGCGAAGGCGTGCACCAGCACTACCTC
GAGGTAGGGCCGTGAAAGCGGGGAGATGTAGGTGGGAGCGGGCCA
Right flanking sequence: Indices 60718 -- 61217
AAAAAAGCAGCGGAGTCTCGCGTACCCGATACACACCCAGGGACATGTGAATTTGGCAACGGACA
GCTGCCAGAATCAGCTGTTTCCACCCTGTAGACTTCTGTACCTTTTCTTTTGATTATGTCCAGTA
TTATCTACCGCCATGCAAAGCCCCGAAAATACGCCAAGAACTAGTGCCTCGTGCTACCGCCATCT
GTAGGGTTGAGACGATCCTGTGATTTTCCTGGGCCTCTCAGGCTAGTGCACCCGGTAGGGCGGTG
TGCAACATGTGGGCTAAAAAATACGCCTGCAAGGAATACGTCAGGCGAGGAGATTGCTTCTTCAA
GCGAGGGGGACGGGGTAGGGTGCTAGTGGTAGCGGGGGGTGTTTTTGTGTGTGGCTGGGTTGCTG
GTGGAGCCCGGTGGCTTTCGGTGGGTGGCTTTCTTTGCGCCAGGTTCCGGAGATCCACCCGTATT
CCATGCATGAGCGGAACCGGCCGTGGAAGCTCGCGGGCGAGGAAG
Found at i:61294 original size:11 final size:11
Alignment explanation
Indices: 61273--61312 Score: 71
Period size: 11 Copynumber: 3.5 Consensus size: 11
61263 GTACGGGTAT
61273 TTTTGGGTGGCA
1 TTTT-GGTGGCA
61285 TTTTGGTGGCA
1 TTTTGGTGGCA
61296 TTTTGGTGGCA
1 TTTTGGTGGCA
61307 TTTTGG
1 TTTTGG
61313 GGTCTGGCAC
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
11 24 0.86
12 4 0.14
ACGTcount: A:0.07, C:0.07, G:0.38, T:0.47
Consensus pattern (11 bp):
TTTTGGTGGCA
Left flanking sequence: Indices 60773 -- 61272
GCAACGGACAGCTGCCAGAATCAGCTGTTTCCACCCTGTAGACTTCTGTACCTTTTCTTTTGATT
ATGTCCAGTATTATCTACCGCCATGCAAAGCCCCGAAAATACGCCAAGAACTAGTGCCTCGTGCT
ACCGCCATCTGTAGGGTTGAGACGATCCTGTGATTTTCCTGGGCCTCTCAGGCTAGTGCACCCGG
TAGGGCGGTGTGCAACATGTGGGCTAAAAAATACGCCTGCAAGGAATACGTCAGGCGAGGAGATT
GCTTCTTCAAGCGAGGGGGACGGGGTAGGGTGCTAGTGGTAGCGGGGGGTGTTTTTGTGTGTGGC
TGGGTTGCTGGTGGAGCCCGGTGGCTTTCGGTGGGTGGCTTTCTTTGCGCCAGGTTCCGGAGATC
CACCCGTATTCCATGCATGAGCGGAACCGGCCGTGGAAGCTCGCGGGCGAGGAAGCACGGCGGGG
AAAAATGAAACTACCACGGGGACGCGAGTGAGTTGGTACGGGTAT
Right flanking sequence: Indices 61313 -- 61812
GGTCTGGCACTCACCAAGAGGGGTTGATGAATTTATCGACGAAACATTGTTCATCGCTGAAAAAT
AGTTGTTTCCTCCCCAGAGCCCGAAAAAAATCATCCCAGTCAACAAGCAGGTGTGTGGACTCGCT
TTTACAGCTGTTTTAAAAGTTTGAGTTCCACCATTCCTTTTTCAGACGGTGATTCTAACCGCTTG
ACTACTACTCTTGGTATCAAGAAGTTGACAGCAGGTACGAGTCTAAGATTGATCAAAATGCCAGA
TGAAAATCAATTTCCGTATTGAAAGAGTGTTTGGCTTCTTTCTTCGTCCCTCTCTTTTCGGATAT
GGCCTGGGCCAGCGTGTCTATTGATATAAAGAGTTGGTCGACTACCTCGAACCTACTGAACGACT
CGTGACTGAACGACACCGTGGCTGAACGACACCGTGAATGAACGACACCGTGAGATACAGATTCC
CAAGTGTGAAAGTGCCAATCCTTGATATAACGTTTGTCCATCATT
Found at i:61727 original size:16 final size:16
Alignment explanation
Indices: 61692--61755 Score: 94
Period size: 16 Copynumber: 4.1 Consensus size: 16
61682 CCTCGAACCT
*
61692 ACTGAACGAC-TCGTG
1 ACTGAACGACACCGTG
61707 ACTGAACGACACCGTG
1 ACTGAACGACACCGTG
*
61723 GCTGAACGACACCGTG
1 ACTGAACGACACCGTG
*
61739 AATGAACGACACCGTG
1 ACTGAACGACACCGTG
61755 A
1 A
61756 GATACAGATT
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
15 10 0.23
16 34 0.77
ACGTcount: A:0.31, C:0.28, G:0.27, T:0.14
Consensus pattern (16 bp):
ACTGAACGACACCGTG
Left flanking sequence: Indices 61192 -- 61691
GCCGTGGAAGCTCGCGGGCGAGGAAGCACGGCGGGGAAAAATGAAACTACCACGGGGACGCGAGT
GAGTTGGTACGGGTATTTTTGGGTGGCATTTTGGTGGCATTTTGGTGGCATTTTGGGGTCTGGCA
CTCACCAAGAGGGGTTGATGAATTTATCGACGAAACATTGTTCATCGCTGAAAAATAGTTGTTTC
CTCCCCAGAGCCCGAAAAAAATCATCCCAGTCAACAAGCAGGTGTGTGGACTCGCTTTTACAGCT
GTTTTAAAAGTTTGAGTTCCACCATTCCTTTTTCAGACGGTGATTCTAACCGCTTGACTACTACT
CTTGGTATCAAGAAGTTGACAGCAGGTACGAGTCTAAGATTGATCAAAATGCCAGATGAAAATCA
ATTTCCGTATTGAAAGAGTGTTTGGCTTCTTTCTTCGTCCCTCTCTTTTCGGATATGGCCTGGGC
CAGCGTGTCTATTGATATAAAGAGTTGGTCGACTACCTCGAACCT
Right flanking sequence: Indices 61756 -- 62255
GATACAGATTCCCAAGTGTGAAAGTGCCAATCCTTGATATAACGTTTGTCCATCATTCTGATTGC
GGTCACTTGATCAAAGTTTGACCGAATCGAGATGAAGATGAAGACCCTTTAAAGACCTAGTCATA
ATTACTGGACAATGGAAGAGTGGCTTCACCCAATGTGCTAACAGACTCTTTGGTACCGTTCCAGG
CCGTGGCTCCATCCACCACATCCTACTTCAACACATTCTCCCCACCACCAGCCCTACACTAGCCA
CACATAACCCCACCCACCCACCACCCAATTCACCACTTACCACCCACCCTAACCCCTCACTGGCT
CGCATTCCCCTCCATTCGCACCCCAAGCACCCAATTGCCACCCGTCCCATCTCGTCTACACCCCC
ACCTCGTCTACACCCCACTCCCCATCTCGTCTACACCCACCTCCCTCCTACAAATTCCCAAACCA
TACATCCATTAATTAATAAAGTGAAACACGATAAAGTGCAAGATC
Found at i:62163 original size:16 final size:17
Alignment explanation
Indices: 62126--62161 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
62116 TGCCACCCGT
*
62126 CCCATCTCGTCTACACC
1 CCCACCTCGTCTACACC
62143 CCCACCTCGTCTACACC
1 CCCACCTCGTCTACACC
62160 CC
1 CC
62162 ACTCCCCATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.17, C:0.58, G:0.06, T:0.19
Consensus pattern (17 bp):
CCCACCTCGTCTACACC
Left flanking sequence: Indices 61626 -- 62125
CTTTTCGGATATGGCCTGGGCCAGCGTGTCTATTGATATAAAGAGTTGGTCGACTACCTCGAACC
TACTGAACGACTCGTGACTGAACGACACCGTGGCTGAACGACACCGTGAATGAACGACACCGTGA
GATACAGATTCCCAAGTGTGAAAGTGCCAATCCTTGATATAACGTTTGTCCATCATTCTGATTGC
GGTCACTTGATCAAAGTTTGACCGAATCGAGATGAAGATGAAGACCCTTTAAAGACCTAGTCATA
ATTACTGGACAATGGAAGAGTGGCTTCACCCAATGTGCTAACAGACTCTTTGGTACCGTTCCAGG
CCGTGGCTCCATCCACCACATCCTACTTCAACACATTCTCCCCACCACCAGCCCTACACTAGCCA
CACATAACCCCACCCACCCACCACCCAATTCACCACTTACCACCCACCCTAACCCCTCACTGGCT
CGCATTCCCCTCCATTCGCACCCCAAGCACCCAATTGCCACCCGT
Right flanking sequence: Indices 62162 -- 62661
ACTCCCCATCTCGTCTACACCCACCTCCCTCCTACAAATTCCCAAACCATACATCCATTAATTAA
TAAAGTGAAACACGATAAAGTGCAAGATCAAACTGGCAAACACAAACTCGCCAAACACGTAGTTG
TTCGCCTCCTCCTTGGGCAGGTCCACCACCTGCAACCGCAACAGCACCGCCAACACAAACTGGCC
CACACACGAGATAAACCCGCCCAAGAACGCGTTGAAAGGGAAGTCCCCCACCACAATCACGTACA
CGAACTGGAGCACCCCCAACAACACGAGAAACGCCAAAAACGTGTCGATCAACTGGAGCCTCGGG
GTCAATGTCTTGACGTAGTCGTTGTAGGTGAGCTGGAAGGCGGAGAACACCTCGGACATCTGCTG
GGACGCCGCGGGAGTCTTGGGTTTGACTGCCTTGACGGGGACGGAGCCCTTGGCAGCGGCTTTGG
ACATGGTCTTGACGTGTCGAAGCGGGCGAAAAATGCGCGTATGAG
Found at i:63262 original size:19 final size:18
Alignment explanation
Indices: 63203--63277 Score: 55
Period size: 19 Copynumber: 4.1 Consensus size: 18
63193 CGTACATAAA
* *
63203 TCACCTGCCAGTATATCAC
1 TCACCT-CCACTACATCAC
* * * *
63222 TCACCTAACACTTCGTCCC
1 TCACCT-CCACTACATCAC
63241 TCACCTTCCACTACATCAC
1 TCACC-TCCACTACATCAC
63260 TCA-C-CCACTACATCAC
1 TCACCTCCACTACATCAC
63276 TC
1 TC
63278 GTCTGACCTT
Statistics
Matches: 44, Mismatches: 11, Indels: 5
0.73 0.18 0.08
Matches are distributed among these distances:
16 14 0.32
18 1 0.02
19 28 0.64
20 1 0.02
ACGTcount: A:0.25, C:0.45, G:0.04, T:0.25
Consensus pattern (18 bp):
TCACCTCCACTACATCAC
Left flanking sequence: Indices 62703 -- 63202
GGGAACAGAAGGGGGGATTGGGGGGTGGTATGGGGTTGTAGGGTGCTCTACGGTGGGATTTGTTG
GGGTATTAGTGGTTTTCAGGAGGTTTGGGCGCGTTTTTGGTGGGTGACGCGTGGTGGGTGGGTGT
TTGGAGGCTGTGGTGGAACTTTCGCAGGACGGGTAGTGATGAGAATTGACAGAGATGGTGTATTG
ATAGACGTTGGGTGTATTGGGTGTTGGTAGAGATGTTGGGGTGGACAATGGCATAATAGCAGAAT
TGTCCGGTTGCGGGTTATTTGCTCAGTTAGTGGTCTCATGTCACTGTTACAATTCTCAGTCATAA
TGAAATAATCAACCGTAGTACATGTGATCTACCGTAATAATCGACTGTACGTACGGTTATAAGGA
TGCAAACACACTATAACTAGCTCATACCAACATCCTTCAACCTAGCAACCGCCCTTCTAATCCCC
AAGAGTACCCACCACTCACTTACCAGTAAATCACTCGTACATAAA
Right flanking sequence: Indices 63278 -- 63777
GTCTGACCTTATCGTGATAACGCCACTCGGGCAAACTTACGATCGCCGCGGCCACCCGTCACGGC
TAATCCTCCGATCCTTCCACTCAACCCATGGCACCATGGGCCAGTCACACAAACGTGTCAGTCAC
AAAACGTGTCTGGTTACACCAACCTCCATCTCCACGACCCAATTGCAATTTCACCTAGATTCCCA
TTCTACACTCTTACATTCGAACTCTTCTCATCCACATCAACCTAACTTTCCTACAGCTTCTCCGC
TAAATATTTCTCTCGTCTTCCCAGCCGTCTCCTCTTCGCGCTCGGTGTTTGCCTCAATCCCTCCG
TTAGCAGCACGGGTCTCTCCGCATCCTGATCCAGCCGTGATCAGGTTGGAACCCCGTAGTCCACC
ACCCGTAGCCCCCAGGAAAACACCTGTTCCACCAACTTCGCGGCCCCTCTGGTCTTCGCCTCGAA
CCACCACCCGTTCCCGGTCCCCCGCCATTTGCCACCAACCCCACT
Found at i:63414 original size:16 final size:17
Alignment explanation
Indices: 63384--63417 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
63374 CACCATGGGC
63384 CAGTCACACAAACGTGT
1 CAGTCACACAAACGTGT
63401 CAGTCACA-AAACGTGT
1 CAGTCACACAAACGTGT
63417 C
1 C
63418 TGGTTACACC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.35, C:0.29, G:0.18, T:0.18
Consensus pattern (17 bp):
CAGTCACACAAACGTGT
Left flanking sequence: Indices 62884 -- 63383
GAGATGGTGTATTGATAGACGTTGGGTGTATTGGGTGTTGGTAGAGATGTTGGGGTGGACAATGG
CATAATAGCAGAATTGTCCGGTTGCGGGTTATTTGCTCAGTTAGTGGTCTCATGTCACTGTTACA
ATTCTCAGTCATAATGAAATAATCAACCGTAGTACATGTGATCTACCGTAATAATCGACTGTACG
TACGGTTATAAGGATGCAAACACACTATAACTAGCTCATACCAACATCCTTCAACCTAGCAACCG
CCCTTCTAATCCCCAAGAGTACCCACCACTCACTTACCAGTAAATCACTCGTACATAAATCACCT
GCCAGTATATCACTCACCTAACACTTCGTCCCTCACCTTCCACTACATCACTCACCCACTACATC
ACTCGTCTGACCTTATCGTGATAACGCCACTCGGGCAAACTTACGATCGCCGCGGCCACCCGTCA
CGGCTAATCCTCCGATCCTTCCACTCAACCCATGGCACCATGGGC
Right flanking sequence: Indices 63418 -- 63917
TGGTTACACCAACCTCCATCTCCACGACCCAATTGCAATTTCACCTAGATTCCCATTCTACACTC
TTACATTCGAACTCTTCTCATCCACATCAACCTAACTTTCCTACAGCTTCTCCGCTAAATATTTC
TCTCGTCTTCCCAGCCGTCTCCTCTTCGCGCTCGGTGTTTGCCTCAATCCCTCCGTTAGCAGCAC
GGGTCTCTCCGCATCCTGATCCAGCCGTGATCAGGTTGGAACCCCGTAGTCCACCACCCGTAGCC
CCCAGGAAAACACCTGTTCCACCAACTTCGCGGCCCCTCTGGTCTTCGCCTCGAACCACCACCCG
TTCCCGGTCCCCCGCCATTTGCCACCAACCCCACTTGGTCACTAATTGCTTGGTCCGCGCTCGCA
ACCGCAGCCAGTCGCCTCCCTAGCACCTCAGAAAAACTCGCACAGCTGATGGCACCTCCCATGAC
TGGAACTTGTGTCAGCACCATCAAGTGCCTTGGGGTGGCCTCGCT
Found at i:64602 original size:19 final size:19
Alignment explanation
Indices: 64559--64603 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
64549 GTGTGTTGAG
*
64559 GAGGTGCAAGAGGTTTCAA
1 GAGGTGCAAGAGGGTTCAA
*
64578 GTGGTGCAAG-GGGTTCAA
1 GAGGTGCAAGAGGGTTCAA
64596 TGAGGTGC
1 -GAGGTGC
64604 GAGGAGTGTA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.24, C:0.11, G:0.42, T:0.22
Consensus pattern (19 bp):
GAGGTGCAAGAGGGTTCAA
Left flanking sequence: Indices 64059 -- 64558
GATCGCCCTGGGGTTGTTCTACACCGCGTACACCTACTCGCCCCCCTTCGAGAAGCACCCCTACT
TAATCTACTCGGGTTTGCTGGCAGCATTGGCCGGGCTCGGAGTGTGGTACGGCTACCCGAAGCCT
GGGTGCCACTGCCGCAAGCTGCACCGCACCACCTCCTCCTCCGTGAAGGCTCCCTCCGCCTCGGC
GGAACAGCTTGACAAGAGCTACGTCCATGTGTCGGACGAGGACCTGAGCGTGGTGCTGACGCCCT
CGCTGACCACTCCTTCGCTGCCCCAGTTGGCTCTGAACGAGGAGGAGACTGCGATCGACACCGAG
GTGCTGCAGACGTTGTTGAAGAAGAAGGTCACCACCACTTTGGACAAGGCGGTGGTGGGCTACAC
GTTCTCGGGCGCGGTGGCGGCTGTCGGGTTTGTGTTGGGAGCGATCGGGGTGTTGGGCGATCTCT
ACTAGTATGTATAAATGTATGATAGCAAGCGATGGGTGTGTTGAG
Right flanking sequence: Indices 64604 -- 65103
GAGGAGTGTAGGGAGGTGCGAGGTGCAGAGTGGTAGGGTAAGACCTTCGATCGTGGGTCGCGATG
GTTGTCGCTGGTTGGCCGTATCGTCGGGTCGGGGGTTGCGTGTTGTAACTTTTTGCCATCACTAA
TTATACCAGTTTTTGCTACAATTCCTGTAATTTTGGAAAAGTTTTGGGGAACCAGCCAAGTTGAG
GTAGGTAGATGGTTCAACTCGCGGGTTGGGTACTGTTCAAATGCTCAATAAGAGATTAGCGTCAA
ATAGAGACATTGGTCTGGCAGCCACGGAGGAAATAGATCAACACTCCGTACGTAGTTAGCATCCT
AGTTTACGCCCAACGCAAATACGTATGTTCGGTAACCCTGATAATGGTTCGATCGGGGCCGTTGG
GTGGTGTTTCAGAATACTCAGCCCATTCTACCAGCTAAAACACCCTACAATGAGCGGACGACGCA
CGCTAACTCAGACCCACTTCCCTCAAACGCGTTCACCTTTGTACT
Found at i:67080 original size:16 final size:16
Alignment explanation
Indices: 67059--67095 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
67049 CCGACGGGGA
67059 ATTCCGCGAGACGCCC
1 ATTCCGCGAGACGCCC
**
67075 ATTCCGCTTGACGCCC
1 ATTCCGCGAGACGCCC
67091 ATTCC
1 ATTCC
67096 ACCAGTTGCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.16, C:0.43, G:0.19, T:0.22
Consensus pattern (16 bp):
ATTCCGCGAGACGCCC
Left flanking sequence: Indices 66559 -- 67058
TGATGCCCATCGACACCCAGATGGTGGCGCTGCAGCTGTTGCGGTACTTGCCCGAAGAGGTCACC
GTGGACGATTTGGTGGCCACCGAGGTCCAGCCGTCGCAGTTGGCGGCCACCGCCCTGGCGATCGT
CGAGGCCGACAACATCGCCAGCGAGTTGGAACAGGCGGGGTTCACCGCGGGGTACGTCGAGCATA
TACGTCTCATGTGCTCGGACGACCGCTACGTGATCCAGAACTACTTGCACCGGGTGGCTCCTTTG
CTCTGTGGTGCCCAGGAGGCGCTCGATGCGGTGGTGAGACCGGACTTGCCCCACATGTGGACGCT
CGACGAGGACCGCGAGTTGGTGCGCAAGGACAAGCGCGACATGACCAACCCGGAGACGTTACGGT
TCGACTATTTGATGGAGAACGCGGAGTTGATCGACCCCAAAATATTTCAGTAGCTCGTCTGTCGC
CATGGCAACCTCTGCACCACGCCACTCACCGGAGCCCGACGGGGA
Right flanking sequence: Indices 67096 -- 67595
ACCAGTTGCCGCTTTGGGCACAGGCATTCGTCGTCTATGTACTATCATGAGACCATAATTAATAA
GCAATGCACATCTAATCACAAACAAACCTGCCGGCGATCGGCATCGCAATCATCGCCTTAGCAGC
AACTACCCCAATCAAGCAATCGGATTGTTTACCATCTACGATTTAGTGAGATCGGTTACGAGTCC
TGGGTATTGTTTGTTTACGTTTGTTGCAAAAGAAACGAACCGCGTTTCAGCTGCAACGCAAGCCA
AGCGAACGCCTTAGACTAGTCCTAGAGGATATAAAAGCGGTGGATCCGCCTTTCTTCAAGGATCT
TGTGACCACGCTGGTCAAGGTTTAGTTAAATCGAAAAACTATACTGCTCCGCTTTGTGTAAGATT
GTAGACACCCCTACGGCACCTGCGACGCGTCGCGAGATAAATTTTTTTTTTAGTCGTGTCTAAAA
CAAAAAAACCTGTATTAACCAATAATGAAGAGAAGTAAAAAGCCT
Found at i:74946 original size:17 final size:17
Alignment explanation
Indices: 74923--75003 Score: 58
Period size: 18 Copynumber: 4.7 Consensus size: 17
74913 CCCGAAAAAT
74923 CCCCTTTACACCCTAAA
1 CCCCTTTACACCCTAAA
* * *
74940 TCCCTTTCACATCCTTAA
1 CCCCTTT-ACACCCTAAA
* *
74958 CCTCCTTCACACCCT-TA
1 CC-CCTTTACACCCTAAA
*
74975 -CCCTTTCACACCCTATA
1 CCCCTTT-ACACCCTAAA
*
74992 CCCCTTGACACC
1 CCCCTTTACACC
75004 ATCCCAACAC
Statistics
Matches: 50, Mismatches: 9, Indels: 10
0.72 0.13 0.14
Matches are distributed among these distances:
15 4 0.08
16 8 0.16
17 14 0.28
18 20 0.40
19 4 0.08
ACGTcount: A:0.22, C:0.48, G:0.01, T:0.28
Consensus pattern (17 bp):
CCCCTTTACACCCTAAA
Left flanking sequence: Indices 74423 -- 74922
GGTGGAGATAAGCAATTGATATTTTTTACCCGCTGGAAAAAACCCGGAATTACAATTCCACGATC
GGGCCGGTATCGGCAGCACGAAAAAGACACGAATCAACGGGAACGCAGACACCATCGCCGAAATC
TTTACTGGTGATGGTGGCGATGGTGTATCATAGCGGTCAGTGTGAGGACGCAGTTTGAGCGAATC
AGAGAGGGGTTGTTTGTAATTGCTGAATTAGGCAATTACGCGCAAGATTATGGCCAGCCACAGAG
ATAAGGACTAGCAACCGGAGCACCGGGTAATTAGCAGTTGGCAACGCGAGCCAGCCACGGCAAAA
TCACCTCAAGGATCTGGTAACGATTTCTAGCATCCACGCTCTGGAATCCCCTGAGCAGCCGGAAT
ACGCCGTAATACGCACCTGCTCGTAAACTTCATAAATCACAGTAGACCCATTCCCCATGTCAACC
CCTGTCAACCCCTTCACTAAAAATTCACATTCAGGCCCGAAAAAT
Right flanking sequence: Indices 75004 -- 75503
ATCCCAACACACCCTAAAACACCTCCATTCTCTATAAACTCAACACGTTATACAACAGTTTCAAC
CGGTTGAACCGTACCATGTTGGTCACCTCGCGGTGCTGCAACATCTTTAGCGTTTTAAGCTCCAG
CTCCAACAACAACTCCTCCTCGTGGCCCTTGACGTCCTCACGGTCGCACTTGGCCAAGAGAATCT
TGTGGTCGTCCTTGAACTCGTCGATCCGTGCCAACACCTGCGCCATGTCAAACATGAGCAGCGAC
CGCAACGCGTCGTAGGCGTGCCGGGGGTTGTGGCGGAACAAAAAGAACGTCTTCATCGCCGCCCG
GTCCGCGGACCGCGGCACCTCCTGGATCTCCACCATGTTCATCATGATCAACTTGTAGAGCTCGT
TGCGCACCGTCTTCTCCCGGAGCAACACCGCGTTCAGGATCAGCTTCTCGTCGCCCACCTTCTGT
GTCTTGAGACACCGGAGCACCCGGAACGCGTTGTCGCCAAACGTC
Found at i:74984 original size:16 final size:16
Alignment explanation
Indices: 74941--74994 Score: 63
Period size: 16 Copynumber: 3.2 Consensus size: 16
74931 CACCCTAAAT
*
74941 CCCTTTCACATCCTTAA
1 CCCTTTCACACCCTT-A
*
74958 CCTCCTTCACACCCTTA
1 CC-CTTTCACACCCTTA
74975 CCCTTTCACACCCTATA
1 CCCTTTCACACCCT-TA
74992 CCC
1 CCC
74995 CTTGACACCA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
16 11 0.34
17 10 0.31
18 11 0.34
ACGTcount: A:0.20, C:0.50, G:0.00, T:0.30
Consensus pattern (16 bp):
CCCTTTCACACCCTTA
Left flanking sequence: Indices 74441 -- 74940
ATATTTTTTACCCGCTGGAAAAAACCCGGAATTACAATTCCACGATCGGGCCGGTATCGGCAGCA
CGAAAAAGACACGAATCAACGGGAACGCAGACACCATCGCCGAAATCTTTACTGGTGATGGTGGC
GATGGTGTATCATAGCGGTCAGTGTGAGGACGCAGTTTGAGCGAATCAGAGAGGGGTTGTTTGTA
ATTGCTGAATTAGGCAATTACGCGCAAGATTATGGCCAGCCACAGAGATAAGGACTAGCAACCGG
AGCACCGGGTAATTAGCAGTTGGCAACGCGAGCCAGCCACGGCAAAATCACCTCAAGGATCTGGT
AACGATTTCTAGCATCCACGCTCTGGAATCCCCTGAGCAGCCGGAATACGCCGTAATACGCACCT
GCTCGTAAACTTCATAAATCACAGTAGACCCATTCCCCATGTCAACCCCTGTCAACCCCTTCACT
AAAAATTCACATTCAGGCCCGAAAAATCCCCTTTACACCCTAAAT
Right flanking sequence: Indices 74995 -- 75494
CTTGACACCATCCCAACACACCCTAAAACACCTCCATTCTCTATAAACTCAACACGTTATACAAC
AGTTTCAACCGGTTGAACCGTACCATGTTGGTCACCTCGCGGTGCTGCAACATCTTTAGCGTTTT
AAGCTCCAGCTCCAACAACAACTCCTCCTCGTGGCCCTTGACGTCCTCACGGTCGCACTTGGCCA
AGAGAATCTTGTGGTCGTCCTTGAACTCGTCGATCCGTGCCAACACCTGCGCCATGTCAAACATG
AGCAGCGACCGCAACGCGTCGTAGGCGTGCCGGGGGTTGTGGCGGAACAAAAAGAACGTCTTCAT
CGCCGCCCGGTCCGCGGACCGCGGCACCTCCTGGATCTCCACCATGTTCATCATGATCAACTTGT
AGAGCTCGTTGCGCACCGTCTTCTCCCGGAGCAACACCGCGTTCAGGATCAGCTTCTCGTCGCCC
ACCTTCTGTGTCTTGAGACACCGGAGCACCCGGAACGCGTTGTCG
Found at i:76903 original size:10 final size:10
Alignment explanation
Indices: 76888--76937 Score: 64
Period size: 10 Copynumber: 5.0 Consensus size: 10
76878 GGTTTACGGA
76888 GGTGGGATGG
1 GGTGGGATGG
76898 GGTGGGATGG
1 GGTGGGATGG
*
76908 GGTGGTATGG
1 GGTGGGATGG
* *
76918 GGTGGGGTTG
1 GGTGGGATGG
*
76928 GGTGGAATGG
1 GGTGGGATGG
76938 TGTTGGTTTA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
10 33 1.00
ACGTcount: A:0.10, C:0.00, G:0.66, T:0.24
Consensus pattern (10 bp):
GGTGGGATGG
Left flanking sequence: Indices 76388 -- 76887
CTGGTCGGAGAGGCCTCCGTCGGGGCCACAGTAGTCGGCGATCTTCACCGACCCGTTCGCAAGCA
CGTTCTGGACGATCTGGGCGGCGTCGGACCCGTAGCGGGCCTGCACGTGGGCGATGATGTCGCCG
GCGTGGAGCAATACGTACAATCCCTCGGGGTTGAACAGGTAGACCACGTCCTTCTTCAGCTGCCA
GTAGAACAAGCAGTTGAGCTGGGTCAACAGCACCACTGCCAGCCGGGTGGCCTTGGCTCCGAGGC
CCGTCTTGTGGCTGATCTCGCGCACGGTGAGGCGCCCGTACGAGGCTAGCGCCTCTACGACCTTG
GCGCCGGGGTCGCCGAGGTAGAGGCGGGCCACCGTGGCAAAGAGCCGGTGGTCCGGGGGCTGTGG
TGGGTACCCCGGTTGTGGATGCTGGGTCATGGTGATGAGTGCGATGAGCGAAATTTGATGTGGTT
GTGAGGTGGGTAAGGTGGGGAGAAGAGGTGGGATGGGTTTACGGA
Right flanking sequence: Indices 76938 -- 77437
TGTTGGTTTATTGGGCTGGTGGGTGTGTGTGGCTAGAGTGTGGAAGGATGTGTGGATCAGGTCGA
TCGGAGGCGGGGAAGGAAGAAGGAAGGGAGAAGATGGGAAAGGGAAGGGAAGAGATGGGAAGGGA
AGAGAAGGGGATAGAGTGGTTTGGGGATTGGGTGGTTAGAGGGGGTGGTGTTGGATCGCGCGCTG
GTGGTGTGGTAATGGTGTAGATAGGGGTGGTGTAGGTGGTTGTTTGGTGATGCGGTTGATGTAGT
GCGACAGTGGTGAGGCACGGGTTAAGGGGTCAAGAAGGGGTAGGGCATGTAGTAAGGGTGCTGGG
GCTGTGTAGAGGGCGCAATTGGACTAGACTGCTGTGTTTCCTGGACTTCCAGGGTGGTGCTTAGT
TGATTTTTCACCCCCTGACCCAGCCCTAGTTGATGACGTAATGAGAGAGAGAGAGAGAGAGAGAG
AGAGATGATTTGGCAGTAGCAATACCCGAACGTGTGGAAGTAGGC
Found at i:77048 original size:21 final size:20
Alignment explanation
Indices: 77024--77074 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
77014 GAAGGAAGAA
77024 GGAAGGG-AGAAGATGGGAAAG
1 GGAAGGGAAG-AGATGGG-AAG
77045 GGAAGGGAAGAGATGGGAAG
1 GGAAGGGAAGAGATGGGAAG
*
77065 GGAAGAGAAG
1 GGAAGGGAAG
77075 GGGATAGAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 12 0.43
21 14 0.50
22 2 0.07
ACGTcount: A:0.43, C:0.00, G:0.53, T:0.04
Consensus pattern (20 bp):
GGAAGGGAAGAGATGGGAAG
Left flanking sequence: Indices 76524 -- 77023
AGCAATACGTACAATCCCTCGGGGTTGAACAGGTAGACCACGTCCTTCTTCAGCTGCCAGTAGAA
CAAGCAGTTGAGCTGGGTCAACAGCACCACTGCCAGCCGGGTGGCCTTGGCTCCGAGGCCCGTCT
TGTGGCTGATCTCGCGCACGGTGAGGCGCCCGTACGAGGCTAGCGCCTCTACGACCTTGGCGCCG
GGGTCGCCGAGGTAGAGGCGGGCCACCGTGGCAAAGAGCCGGTGGTCCGGGGGCTGTGGTGGGTA
CCCCGGTTGTGGATGCTGGGTCATGGTGATGAGTGCGATGAGCGAAATTTGATGTGGTTGTGAGG
TGGGTAAGGTGGGGAGAAGAGGTGGGATGGGTTTACGGAGGTGGGATGGGGTGGGATGGGGTGGT
ATGGGGTGGGGTTGGGTGGAATGGTGTTGGTTTATTGGGCTGGTGGGTGTGTGTGGCTAGAGTGT
GGAAGGATGTGTGGATCAGGTCGATCGGAGGCGGGGAAGGAAGAA
Right flanking sequence: Indices 77075 -- 77574
GGGATAGAGTGGTTTGGGGATTGGGTGGTTAGAGGGGGTGGTGTTGGATCGCGCGCTGGTGGTGT
GGTAATGGTGTAGATAGGGGTGGTGTAGGTGGTTGTTTGGTGATGCGGTTGATGTAGTGCGACAG
TGGTGAGGCACGGGTTAAGGGGTCAAGAAGGGGTAGGGCATGTAGTAAGGGTGCTGGGGCTGTGT
AGAGGGCGCAATTGGACTAGACTGCTGTGTTTCCTGGACTTCCAGGGTGGTGCTTAGTTGATTTT
TCACCCCCTGACCCAGCCCTAGTTGATGACGTAATGAGAGAGAGAGAGAGAGAGAGAGAGAGATG
ATTTGGCAGTAGCAATACCCGAACGTGTGGAAGTAGGCTTATTGAAGGAAGTAGGCTTATTCAAG
GTTCAAGTTTCTCTTCCGACAGCTAAAGCTGGCTTCTGGCCCAACTGTGTTGAGTGACACAATCC
TATGACAAGAGTATAGACCACGACTGTACACTGTACACGACTGTT
Found at i:77064 original size:15 final size:15
Alignment explanation
Indices: 77044--77072 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
77034 AGATGGGAAA
77044 GGGAAGGGAAGAGAT
1 GGGAAGGGAAGAGAT
77059 GGGAAGGGAAGAGA
1 GGGAAGGGAAGAGA
77073 AGGGGATAGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.55, T:0.03
Consensus pattern (15 bp):
GGGAAGGGAAGAGAT
Left flanking sequence: Indices 76544 -- 77043
GGGGTTGAACAGGTAGACCACGTCCTTCTTCAGCTGCCAGTAGAACAAGCAGTTGAGCTGGGTCA
ACAGCACCACTGCCAGCCGGGTGGCCTTGGCTCCGAGGCCCGTCTTGTGGCTGATCTCGCGCACG
GTGAGGCGCCCGTACGAGGCTAGCGCCTCTACGACCTTGGCGCCGGGGTCGCCGAGGTAGAGGCG
GGCCACCGTGGCAAAGAGCCGGTGGTCCGGGGGCTGTGGTGGGTACCCCGGTTGTGGATGCTGGG
TCATGGTGATGAGTGCGATGAGCGAAATTTGATGTGGTTGTGAGGTGGGTAAGGTGGGGAGAAGA
GGTGGGATGGGTTTACGGAGGTGGGATGGGGTGGGATGGGGTGGTATGGGGTGGGGTTGGGTGGA
ATGGTGTTGGTTTATTGGGCTGGTGGGTGTGTGTGGCTAGAGTGTGGAAGGATGTGTGGATCAGG
TCGATCGGAGGCGGGGAAGGAAGAAGGAAGGGAGAAGATGGGAAA
Right flanking sequence: Indices 77073 -- 77572
AGGGGATAGAGTGGTTTGGGGATTGGGTGGTTAGAGGGGGTGGTGTTGGATCGCGCGCTGGTGGT
GTGGTAATGGTGTAGATAGGGGTGGTGTAGGTGGTTGTTTGGTGATGCGGTTGATGTAGTGCGAC
AGTGGTGAGGCACGGGTTAAGGGGTCAAGAAGGGGTAGGGCATGTAGTAAGGGTGCTGGGGCTGT
GTAGAGGGCGCAATTGGACTAGACTGCTGTGTTTCCTGGACTTCCAGGGTGGTGCTTAGTTGATT
TTTCACCCCCTGACCCAGCCCTAGTTGATGACGTAATGAGAGAGAGAGAGAGAGAGAGAGAGAGA
TGATTTGGCAGTAGCAATACCCGAACGTGTGGAAGTAGGCTTATTGAAGGAAGTAGGCTTATTCA
AGGTTCAAGTTTCTCTTCCGACAGCTAAAGCTGGCTTCTGGCCCAACTGTGTTGAGTGACACAAT
CCTATGACAAGAGTATAGACCACGACTGTACACTGTACACGACTG
Found at i:77377 original size:2 final size:2
Alignment explanation
Indices: 77370--77397 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
77360 ATGACGTAAT
77370 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA
77398 TGATTTGGCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
GA
Left flanking sequence: Indices 76870 -- 77369
GTGGGATGGGTTTACGGAGGTGGGATGGGGTGGGATGGGGTGGTATGGGGTGGGGTTGGGTGGAA
TGGTGTTGGTTTATTGGGCTGGTGGGTGTGTGTGGCTAGAGTGTGGAAGGATGTGTGGATCAGGT
CGATCGGAGGCGGGGAAGGAAGAAGGAAGGGAGAAGATGGGAAAGGGAAGGGAAGAGATGGGAAG
GGAAGAGAAGGGGATAGAGTGGTTTGGGGATTGGGTGGTTAGAGGGGGTGGTGTTGGATCGCGCG
CTGGTGGTGTGGTAATGGTGTAGATAGGGGTGGTGTAGGTGGTTGTTTGGTGATGCGGTTGATGT
AGTGCGACAGTGGTGAGGCACGGGTTAAGGGGTCAAGAAGGGGTAGGGCATGTAGTAAGGGTGCT
GGGGCTGTGTAGAGGGCGCAATTGGACTAGACTGCTGTGTTTCCTGGACTTCCAGGGTGGTGCTT
AGTTGATTTTTCACCCCCTGACCCAGCCCTAGTTGATGACGTAAT
Right flanking sequence: Indices 77398 -- 77897
TGATTTGGCAGTAGCAATACCCGAACGTGTGGAAGTAGGCTTATTGAAGGAAGTAGGCTTATTCA
AGGTTCAAGTTTCTCTTCCGACAGCTAAAGCTGGCTTCTGGCCCAACTGTGTTGAGTGACACAAT
CCTATGACAAGAGTATAGACCACGACTGTACACTGTACACGACTGTTGATCACCCACCATTACTC
AAACCTTAACGTTTAGTCTAGGCGCTGAAAGAAGGAAACGGCCAATCCTACGCTCAATCCAGCCC
GCCTGATTCATCACCAAGCTTCACTACCTTTTCTCCATCTATCTTACAACTGACGAGAACCTATT
ATTTGCTTCCAATACTTTAAAACTCATCCTCCATTTTCTCCAGTTCTCCATTTCTCCATTTCTCC
ATTTCTCCATTTCCTCTATTTCCTCCCTCTCCCTCCCACTTCCTCCCACTTCCTCCCACTCCCTC
CCTCTCCCTCCTTTTCCTCTTTCGCAACGCTACCGAAAAATCATC
Found at i:77451 original size:18 final size:18
Alignment explanation
Indices: 77428--77465 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
77418 CCGAACGTGT
*
77428 GGAAGTAGGCTTATTGAA
1 GGAAGTAGGCTTATTCAA
77446 GGAAGTAGGCTTATTCAA
1 GGAAGTAGGCTTATTCAA
77464 GG
1 GG
77466 TTCAAGTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.08, G:0.34, T:0.26
Consensus pattern (18 bp):
GGAAGTAGGCTTATTCAA
Left flanking sequence: Indices 76928 -- 77427
GGTGGAATGGTGTTGGTTTATTGGGCTGGTGGGTGTGTGTGGCTAGAGTGTGGAAGGATGTGTGG
ATCAGGTCGATCGGAGGCGGGGAAGGAAGAAGGAAGGGAGAAGATGGGAAAGGGAAGGGAAGAGA
TGGGAAGGGAAGAGAAGGGGATAGAGTGGTTTGGGGATTGGGTGGTTAGAGGGGGTGGTGTTGGA
TCGCGCGCTGGTGGTGTGGTAATGGTGTAGATAGGGGTGGTGTAGGTGGTTGTTTGGTGATGCGG
TTGATGTAGTGCGACAGTGGTGAGGCACGGGTTAAGGGGTCAAGAAGGGGTAGGGCATGTAGTAA
GGGTGCTGGGGCTGTGTAGAGGGCGCAATTGGACTAGACTGCTGTGTTTCCTGGACTTCCAGGGT
GGTGCTTAGTTGATTTTTCACCCCCTGACCCAGCCCTAGTTGATGACGTAATGAGAGAGAGAGAG
AGAGAGAGAGAGAGATGATTTGGCAGTAGCAATACCCGAACGTGT
Right flanking sequence: Indices 77466 -- 77965
TTCAAGTTTCTCTTCCGACAGCTAAAGCTGGCTTCTGGCCCAACTGTGTTGAGTGACACAATCCT
ATGACAAGAGTATAGACCACGACTGTACACTGTACACGACTGTTGATCACCCACCATTACTCAAA
CCTTAACGTTTAGTCTAGGCGCTGAAAGAAGGAAACGGCCAATCCTACGCTCAATCCAGCCCGCC
TGATTCATCACCAAGCTTCACTACCTTTTCTCCATCTATCTTACAACTGACGAGAACCTATTATT
TGCTTCCAATACTTTAAAACTCATCCTCCATTTTCTCCAGTTCTCCATTTCTCCATTTCTCCATT
TCTCCATTTCCTCTATTTCCTCCCTCTCCCTCCCACTTCCTCCCACTTCCTCCCACTCCCTCCCT
CTCCCTCCTTTTCCTCTTTCGCAACGCTACCGAAAAATCATCACCACCCCACCACCTCCACCCCA
TGGTCAAAACCGAGCTCAAGGCGGCCAAACAGGCCATTGAGAGCA
Found at i:77771 original size:8 final size:8
Alignment explanation
Indices: 77751--77800 Score: 82
Period size: 8 Copynumber: 6.1 Consensus size: 8
77741 AAAACTCATC
77751 CTCCATTTT
1 CTCCA-TTT
*
77760 CTCCAGTT
1 CTCCATTT
77768 CTCCATTT
1 CTCCATTT
77776 CTCCATTT
1 CTCCATTT
77784 CTCCATTT
1 CTCCATTT
77792 CTCCATTT
1 CTCCATTT
77800 C
1 C
77801 CTCTATTTCC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
8 34 0.87
9 5 0.13
ACGTcount: A:0.12, C:0.38, G:0.02, T:0.48
Consensus pattern (8 bp):
CTCCATTT
Left flanking sequence: Indices 77251 -- 77750
AAGGGTGCTGGGGCTGTGTAGAGGGCGCAATTGGACTAGACTGCTGTGTTTCCTGGACTTCCAGG
GTGGTGCTTAGTTGATTTTTCACCCCCTGACCCAGCCCTAGTTGATGACGTAATGAGAGAGAGAG
AGAGAGAGAGAGAGAGATGATTTGGCAGTAGCAATACCCGAACGTGTGGAAGTAGGCTTATTGAA
GGAAGTAGGCTTATTCAAGGTTCAAGTTTCTCTTCCGACAGCTAAAGCTGGCTTCTGGCCCAACT
GTGTTGAGTGACACAATCCTATGACAAGAGTATAGACCACGACTGTACACTGTACACGACTGTTG
ATCACCCACCATTACTCAAACCTTAACGTTTAGTCTAGGCGCTGAAAGAAGGAAACGGCCAATCC
TACGCTCAATCCAGCCCGCCTGATTCATCACCAAGCTTCACTACCTTTTCTCCATCTATCTTACA
ACTGACGAGAACCTATTATTTGCTTCCAATACTTTAAAACTCATC
Right flanking sequence: Indices 77801 -- 78300
CTCTATTTCCTCCCTCTCCCTCCCACTTCCTCCCACTTCCTCCCACTCCCTCCCTCTCCCTCCTT
TTCCTCTTTCGCAACGCTACCGAAAAATCATCACCACCCCACCACCTCCACCCCATGGTCAAAAC
CGAGCTCAAGGCGGCCAAACAGGCCATTGAGAGCAACGACCCGGAGACCGCCCTCTACTACACCA
AAGACGTCCTCCAGCAGGACCCCAAGAACTACTACGCGCTCATCTTCGAGGGCAAGGCCCACCAG
CTCAACGACAACCTCGCCAAGGCGTGTGCGTCGTACGAGAAGGCTATCGCGGTCGACGGCGACAA
CTTGCTAGGGTGGAAGGGTCTCTTCCAGGCGACCCGGCTGCTTTCGCCCCCCGAGCCCCTGCGGG
TGATTGCCGCGGCCACCGGGCTCGGGGAGGTGCAGCACCGCCAGGAGGTGCTGAGTGCCGACACC
GCACGCGACGTCAAAAACTACTTCGACACCATCGGCTACAAGCAG
Found at i:77788 original size:24 final size:25
Alignment explanation
Indices: 77749--77809 Score: 88
Period size: 24 Copynumber: 2.4 Consensus size: 25
77739 TTAAAACTCA
77749 TCCTCCATTTTCTCCAGTTCTCCATT
1 TCCTCCA-TTTCTCCAGTTCTCCATT
*
77775 T-CTCCATTTCTCCATTTCTCCATT
1 TCCTCCATTTCTCCAGTTCTCCATT
*
77799 TCCTCTATTTC
1 TCCTCCATTTC
77810 CTCCCTCTCC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
24 18 0.56
25 13 0.41
26 1 0.03
ACGTcount: A:0.11, C:0.38, G:0.02, T:0.49
Consensus pattern (25 bp):
TCCTCCATTTCTCCAGTTCTCCATT
Left flanking sequence: Indices 77249 -- 77748
GTAAGGGTGCTGGGGCTGTGTAGAGGGCGCAATTGGACTAGACTGCTGTGTTTCCTGGACTTCCA
GGGTGGTGCTTAGTTGATTTTTCACCCCCTGACCCAGCCCTAGTTGATGACGTAATGAGAGAGAG
AGAGAGAGAGAGAGAGAGATGATTTGGCAGTAGCAATACCCGAACGTGTGGAAGTAGGCTTATTG
AAGGAAGTAGGCTTATTCAAGGTTCAAGTTTCTCTTCCGACAGCTAAAGCTGGCTTCTGGCCCAA
CTGTGTTGAGTGACACAATCCTATGACAAGAGTATAGACCACGACTGTACACTGTACACGACTGT
TGATCACCCACCATTACTCAAACCTTAACGTTTAGTCTAGGCGCTGAAAGAAGGAAACGGCCAAT
CCTACGCTCAATCCAGCCCGCCTGATTCATCACCAAGCTTCACTACCTTTTCTCCATCTATCTTA
CAACTGACGAGAACCTATTATTTGCTTCCAATACTTTAAAACTCA
Right flanking sequence: Indices 77810 -- 78309
CTCCCTCTCCCTCCCACTTCCTCCCACTTCCTCCCACTCCCTCCCTCTCCCTCCTTTTCCTCTTT
CGCAACGCTACCGAAAAATCATCACCACCCCACCACCTCCACCCCATGGTCAAAACCGAGCTCAA
GGCGGCCAAACAGGCCATTGAGAGCAACGACCCGGAGACCGCCCTCTACTACACCAAAGACGTCC
TCCAGCAGGACCCCAAGAACTACTACGCGCTCATCTTCGAGGGCAAGGCCCACCAGCTCAACGAC
AACCTCGCCAAGGCGTGTGCGTCGTACGAGAAGGCTATCGCGGTCGACGGCGACAACTTGCTAGG
GTGGAAGGGTCTCTTCCAGGCGACCCGGCTGCTTTCGCCCCCCGAGCCCCTGCGGGTGATTGCCG
CGGCCACCGGGCTCGGGGAGGTGCAGCACCGCCAGGAGGTGCTGAGTGCCGACACCGCACGCGAC
GTCAAAAACTACTTCGACACCATCGGCTACAAGCAGAACCCAGAG
Found at i:77824 original size:10 final size:10
Alignment explanation
Indices: 77809--77863 Score: 74
Period size: 10 Copynumber: 5.5 Consensus size: 10
77799 TCCTCTATTT
*
77809 CCTCCCTCTC
1 CCTCCCACTC
*
77819 CCTCCCACTT
1 CCTCCCACTC
*
77829 CCTCCCACTT
1 CCTCCCACTC
77839 CCTCCCACTC
1 CCTCCCACTC
*
77849 CCTCCCTCTC
1 CCTCCCACTC
77859 CCTCC
1 CCTCC
77864 TTTTCCTCTT
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
10 41 1.00
ACGTcount: A:0.05, C:0.67, G:0.00, T:0.27
Consensus pattern (10 bp):
CCTCCCACTC
Left flanking sequence: Indices 77309 -- 77808
TTCCAGGGTGGTGCTTAGTTGATTTTTCACCCCCTGACCCAGCCCTAGTTGATGACGTAATGAGA
GAGAGAGAGAGAGAGAGAGAGAGATGATTTGGCAGTAGCAATACCCGAACGTGTGGAAGTAGGCT
TATTGAAGGAAGTAGGCTTATTCAAGGTTCAAGTTTCTCTTCCGACAGCTAAAGCTGGCTTCTGG
CCCAACTGTGTTGAGTGACACAATCCTATGACAAGAGTATAGACCACGACTGTACACTGTACACG
ACTGTTGATCACCCACCATTACTCAAACCTTAACGTTTAGTCTAGGCGCTGAAAGAAGGAAACGG
CCAATCCTACGCTCAATCCAGCCCGCCTGATTCATCACCAAGCTTCACTACCTTTTCTCCATCTA
TCTTACAACTGACGAGAACCTATTATTTGCTTCCAATACTTTAAAACTCATCCTCCATTTTCTCC
AGTTCTCCATTTCTCCATTTCTCCATTTCTCCATTTCCTCTATTT
Right flanking sequence: Indices 77864 -- 78363
TTTTCCTCTTTCGCAACGCTACCGAAAAATCATCACCACCCCACCACCTCCACCCCATGGTCAAA
ACCGAGCTCAAGGCGGCCAAACAGGCCATTGAGAGCAACGACCCGGAGACCGCCCTCTACTACAC
CAAAGACGTCCTCCAGCAGGACCCCAAGAACTACTACGCGCTCATCTTCGAGGGCAAGGCCCACC
AGCTCAACGACAACCTCGCCAAGGCGTGTGCGTCGTACGAGAAGGCTATCGCGGTCGACGGCGAC
AACTTGCTAGGGTGGAAGGGTCTCTTCCAGGCGACCCGGCTGCTTTCGCCCCCCGAGCCCCTGCG
GGTGATTGCCGCGGCCACCGGGCTCGGGGAGGTGCAGCACCGCCAGGAGGTGCTGAGTGCCGACA
CCGCACGCGACGTCAAAAACTACTTCGACACCATCGGCTACAAGCAGAACCCAGAGCTCCTAAAG
GCGGTGTTGGAAGCCACGGTGCCGGGAACCCCCTTCGCCGACCTC
Found at i:77832 original size:20 final size:20
Alignment explanation
Indices: 77807--77863 Score: 87
Period size: 20 Copynumber: 2.9 Consensus size: 20
77797 TTTCCTCTAT
77807 TTCCTCCCTCTCCCTCCCAC
1 TTCCTCCCTCTCCCTCCCAC
* *
77827 TTCCTCCCACTTCCTCCCAC
1 TTCCTCCCTCTCCCTCCCAC
*
77847 TCCCTCCCTCTCCCTCC
1 TTCCTCCCTCTCCCTCC
77864 TTTTCCTCTT
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.05, C:0.65, G:0.00, T:0.30
Consensus pattern (20 bp):
TTCCTCCCTCTCCCTCCCAC
Left flanking sequence: Indices 77307 -- 77806
ACTTCCAGGGTGGTGCTTAGTTGATTTTTCACCCCCTGACCCAGCCCTAGTTGATGACGTAATGA
GAGAGAGAGAGAGAGAGAGAGAGAGATGATTTGGCAGTAGCAATACCCGAACGTGTGGAAGTAGG
CTTATTGAAGGAAGTAGGCTTATTCAAGGTTCAAGTTTCTCTTCCGACAGCTAAAGCTGGCTTCT
GGCCCAACTGTGTTGAGTGACACAATCCTATGACAAGAGTATAGACCACGACTGTACACTGTACA
CGACTGTTGATCACCCACCATTACTCAAACCTTAACGTTTAGTCTAGGCGCTGAAAGAAGGAAAC
GGCCAATCCTACGCTCAATCCAGCCCGCCTGATTCATCACCAAGCTTCACTACCTTTTCTCCATC
TATCTTACAACTGACGAGAACCTATTATTTGCTTCCAATACTTTAAAACTCATCCTCCATTTTCT
CCAGTTCTCCATTTCTCCATTTCTCCATTTCTCCATTTCCTCTAT
Right flanking sequence: Indices 77864 -- 78363
TTTTCCTCTTTCGCAACGCTACCGAAAAATCATCACCACCCCACCACCTCCACCCCATGGTCAAA
ACCGAGCTCAAGGCGGCCAAACAGGCCATTGAGAGCAACGACCCGGAGACCGCCCTCTACTACAC
CAAAGACGTCCTCCAGCAGGACCCCAAGAACTACTACGCGCTCATCTTCGAGGGCAAGGCCCACC
AGCTCAACGACAACCTCGCCAAGGCGTGTGCGTCGTACGAGAAGGCTATCGCGGTCGACGGCGAC
AACTTGCTAGGGTGGAAGGGTCTCTTCCAGGCGACCCGGCTGCTTTCGCCCCCCGAGCCCCTGCG
GGTGATTGCCGCGGCCACCGGGCTCGGGGAGGTGCAGCACCGCCAGGAGGTGCTGAGTGCCGACA
CCGCACGCGACGTCAAAAACTACTTCGACACCATCGGCTACAAGCAGAACCCAGAGCTCCTAAAG
GCGGTGTTGGAAGCCACGGTGCCGGGAACCCCCTTCGCCGACCTC
Found at i:77842 original size:30 final size:30
Alignment explanation
Indices: 77807--77863 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
77797 TTTCCTCTAT
* *
77807 TTCCTCCCTCTCCCTCCCACTTCCTCCCAC
1 TTCCTCCCACTCCCTCCCACTCCCTCCCAC
*
77837 TTCCTCCCACTCCCTCCCTCTCCCTCC
1 TTCCTCCCACTCCCTCCCACTCCCTCC
77864 TTTTCCTCTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.05, C:0.65, G:0.00, T:0.30
Consensus pattern (30 bp):
TTCCTCCCACTCCCTCCCACTCCCTCCCAC
Left flanking sequence: Indices 77307 -- 77806
ACTTCCAGGGTGGTGCTTAGTTGATTTTTCACCCCCTGACCCAGCCCTAGTTGATGACGTAATGA
GAGAGAGAGAGAGAGAGAGAGAGAGATGATTTGGCAGTAGCAATACCCGAACGTGTGGAAGTAGG
CTTATTGAAGGAAGTAGGCTTATTCAAGGTTCAAGTTTCTCTTCCGACAGCTAAAGCTGGCTTCT
GGCCCAACTGTGTTGAGTGACACAATCCTATGACAAGAGTATAGACCACGACTGTACACTGTACA
CGACTGTTGATCACCCACCATTACTCAAACCTTAACGTTTAGTCTAGGCGCTGAAAGAAGGAAAC
GGCCAATCCTACGCTCAATCCAGCCCGCCTGATTCATCACCAAGCTTCACTACCTTTTCTCCATC
TATCTTACAACTGACGAGAACCTATTATTTGCTTCCAATACTTTAAAACTCATCCTCCATTTTCT
CCAGTTCTCCATTTCTCCATTTCTCCATTTCTCCATTTCCTCTAT
Right flanking sequence: Indices 77864 -- 78363
TTTTCCTCTTTCGCAACGCTACCGAAAAATCATCACCACCCCACCACCTCCACCCCATGGTCAAA
ACCGAGCTCAAGGCGGCCAAACAGGCCATTGAGAGCAACGACCCGGAGACCGCCCTCTACTACAC
CAAAGACGTCCTCCAGCAGGACCCCAAGAACTACTACGCGCTCATCTTCGAGGGCAAGGCCCACC
AGCTCAACGACAACCTCGCCAAGGCGTGTGCGTCGTACGAGAAGGCTATCGCGGTCGACGGCGAC
AACTTGCTAGGGTGGAAGGGTCTCTTCCAGGCGACCCGGCTGCTTTCGCCCCCCGAGCCCCTGCG
GGTGATTGCCGCGGCCACCGGGCTCGGGGAGGTGCAGCACCGCCAGGAGGTGCTGAGTGCCGACA
CCGCACGCGACGTCAAAAACTACTTCGACACCATCGGCTACAAGCAGAACCCAGAGCTCCTAAAG
GCGGTGTTGGAAGCCACGGTGCCGGGAACCCCCTTCGCCGACCTC
Found at i:79002 original size:18 final size:19
Alignment explanation
Indices: 78973--79013 Score: 75
Period size: 18 Copynumber: 2.2 Consensus size: 19
78963 ACGCGAGGAT
78973 ACTCCAGACCTAGGCCGAG
1 ACTCCAGACCTAGGCCGAG
78992 ACTCC-GACCTAGGCCGAG
1 ACTCCAGACCTAGGCCGAG
79010 ACTC
1 ACTC
79014 GCCAGGCCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 17 0.77
19 5 0.23
ACGTcount: A:0.24, C:0.39, G:0.24, T:0.12
Consensus pattern (19 bp):
ACTCCAGACCTAGGCCGAG
Left flanking sequence: Indices 78473 -- 78972
AGTTGGGCCAGCAGATGCCGCCGGAGCAGCGGGCACGCTTCGATGCCGCGGTGCGCCCGGTGCTC
GCGGCACTGAACCTCACCAAGTACTACGACGACATCTTGGCCATCGCCGACGACGCCCAGGTGCG
GTGCCGCTACCGCGAGGCCAAGCTCCGCCACTTGCTCGAGGTGCTCAAGTCCGCCGCCGACAAGC
CACCGGTGTACGCGCAGGTGCGCGAGGCCATCGACGACATGGTCACCCTCAAAGTGCCCCTGGAG
TTTGGCTGGACCATGTACCTCGACTGGGCGGACTTTGCCCACATCGGGGCGGCGGAGATGCCGGT
GGAGCACGTGGTGTTCTATCTCCAGCACTTTCCCGAGCTGCCGGTGGCGCTGATGCTCTACGCGT
ACGTGCTCCTGGACATGAGCGACTACGACCAGGCCCGGATTGTGAGGGAGACGGGGGGTGCGTTT
GGCGCAGTGGCAGACGAGGAGGGCGAAGGCGAGGGACGCGAGGAT
Right flanking sequence: Indices 79014 -- 79513
GCCAGGCCCAGGCTCCCAAGACCAAGACTCACAAGGCCAAGGCTCCCAACACCAAGACCAAGACT
CCAACCTCGTCTCCACCTCCTCCACCCTCCTCCCGGACCAGGTGCTCGAGATGATGGTCCACGGG
TACCAGGGCGCCAAAAAACTGCTCTTTGCCAACCGCCTCGTGTGCAGCTACTACCTCCATATCCG
CGAGTACCGCGAGGCGCTGGCCCGGTGCCAGGAGCTGATCCGGGTGCTCGCAGCCACCCTGCGCA
CCTACGGCGTCGACAACTTCCTTCCCCACACCAAGACCGACTTCTTGCGCACGTTGGCCATGGTG
TACACCTACTTCGAGGCGCCGAAGAACTTTGCCCGGGCCCTCCAGTTGTACGACTCGATCCTCGG
CTCCAACAGCCACGACGTCCCGTCGCGGGTGGGCAAGGGCGTGATCCTCATGGAGAAGGGCGACT
ACGACAGCGCCCACACGTTGCTTGCGGACGTGGCCGCGACGTATC
Found at i:79042 original size:30 final size:30
Alignment explanation
Indices: 79008--79071 Score: 92
Period size: 30 Copynumber: 2.1 Consensus size: 30
78998 ACCTAGGCCG
* * * *
79008 AGACTCGCCAGGCCCAGGCTCCCAAGACCA
1 AGACTCACAAGGCCAAGGCTCCCAACACCA
79038 AGACTCACAAGGCCAAGGCTCCCAACACCA
1 AGACTCACAAGGCCAAGGCTCCCAACACCA
79068 AGAC
1 AGAC
79072 CAAGACTCCA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.33, C:0.41, G:0.20, T:0.06
Consensus pattern (30 bp):
AGACTCACAAGGCCAAGGCTCCCAACACCA
Left flanking sequence: Indices 78508 -- 79007
CGCTTCGATGCCGCGGTGCGCCCGGTGCTCGCGGCACTGAACCTCACCAAGTACTACGACGACAT
CTTGGCCATCGCCGACGACGCCCAGGTGCGGTGCCGCTACCGCGAGGCCAAGCTCCGCCACTTGC
TCGAGGTGCTCAAGTCCGCCGCCGACAAGCCACCGGTGTACGCGCAGGTGCGCGAGGCCATCGAC
GACATGGTCACCCTCAAAGTGCCCCTGGAGTTTGGCTGGACCATGTACCTCGACTGGGCGGACTT
TGCCCACATCGGGGCGGCGGAGATGCCGGTGGAGCACGTGGTGTTCTATCTCCAGCACTTTCCCG
AGCTGCCGGTGGCGCTGATGCTCTACGCGTACGTGCTCCTGGACATGAGCGACTACGACCAGGCC
CGGATTGTGAGGGAGACGGGGGGTGCGTTTGGCGCAGTGGCAGACGAGGAGGGCGAAGGCGAGGG
ACGCGAGGATACTCCAGACCTAGGCCGAGACTCCGACCTAGGCCG
Right flanking sequence: Indices 79072 -- 79571
CAAGACTCCAACCTCGTCTCCACCTCCTCCACCCTCCTCCCGGACCAGGTGCTCGAGATGATGGT
CCACGGGTACCAGGGCGCCAAAAAACTGCTCTTTGCCAACCGCCTCGTGTGCAGCTACTACCTCC
ATATCCGCGAGTACCGCGAGGCGCTGGCCCGGTGCCAGGAGCTGATCCGGGTGCTCGCAGCCACC
CTGCGCACCTACGGCGTCGACAACTTCCTTCCCCACACCAAGACCGACTTCTTGCGCACGTTGGC
CATGGTGTACACCTACTTCGAGGCGCCGAAGAACTTTGCCCGGGCCCTCCAGTTGTACGACTCGA
TCCTCGGCTCCAACAGCCACGACGTCCCGTCGCGGGTGGGCAAGGGCGTGATCCTCATGGAGAAG
GGCGACTACGACAGCGCCCACACGTTGCTTGCGGACGTGGCCGCGACGTATCCCGACAACACCGA
GGCGGTGGCCGAGCTCGCGTGGTGCGATGTGCGGCTCGGGCGCCA
Found at i:79068 original size:15 final size:15
Alignment explanation
Indices: 79023--79069 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
79013 CGCCAGGCCC
79023 AGGCTCCCAAGACCA
1 AGGCTCCCAAGACCA
* * *
79038 AGACTCACAAGGCCA
1 AGGCTCCCAAGACCA
*
79053 AGGCTCCCAACACCA
1 AGGCTCCCAAGACCA
79068 AG
1 AG
79070 ACCAAGACTC
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.36, C:0.38, G:0.19, T:0.06
Consensus pattern (15 bp):
AGGCTCCCAAGACCA
Left flanking sequence: Indices 78523 -- 79022
GTGCGCCCGGTGCTCGCGGCACTGAACCTCACCAAGTACTACGACGACATCTTGGCCATCGCCGA
CGACGCCCAGGTGCGGTGCCGCTACCGCGAGGCCAAGCTCCGCCACTTGCTCGAGGTGCTCAAGT
CCGCCGCCGACAAGCCACCGGTGTACGCGCAGGTGCGCGAGGCCATCGACGACATGGTCACCCTC
AAAGTGCCCCTGGAGTTTGGCTGGACCATGTACCTCGACTGGGCGGACTTTGCCCACATCGGGGC
GGCGGAGATGCCGGTGGAGCACGTGGTGTTCTATCTCCAGCACTTTCCCGAGCTGCCGGTGGCGC
TGATGCTCTACGCGTACGTGCTCCTGGACATGAGCGACTACGACCAGGCCCGGATTGTGAGGGAG
ACGGGGGGTGCGTTTGGCGCAGTGGCAGACGAGGAGGGCGAAGGCGAGGGACGCGAGGATACTCC
AGACCTAGGCCGAGACTCCGACCTAGGCCGAGACTCGCCAGGCCC
Right flanking sequence: Indices 79070 -- 79569
ACCAAGACTCCAACCTCGTCTCCACCTCCTCCACCCTCCTCCCGGACCAGGTGCTCGAGATGATG
GTCCACGGGTACCAGGGCGCCAAAAAACTGCTCTTTGCCAACCGCCTCGTGTGCAGCTACTACCT
CCATATCCGCGAGTACCGCGAGGCGCTGGCCCGGTGCCAGGAGCTGATCCGGGTGCTCGCAGCCA
CCCTGCGCACCTACGGCGTCGACAACTTCCTTCCCCACACCAAGACCGACTTCTTGCGCACGTTG
GCCATGGTGTACACCTACTTCGAGGCGCCGAAGAACTTTGCCCGGGCCCTCCAGTTGTACGACTC
GATCCTCGGCTCCAACAGCCACGACGTCCCGTCGCGGGTGGGCAAGGGCGTGATCCTCATGGAGA
AGGGCGACTACGACAGCGCCCACACGTTGCTTGCGGACGTGGCCGCGACGTATCCCGACAACACC
GAGGCGGTGGCCGAGCTCGCGTGGTGCGATGTGCGGCTCGGGCGC
Found at i:82378 original size:12 final size:12
Alignment explanation
Indices: 82361--82385 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
82351 AACGTATATG
82361 AAAATAGAGGCT
1 AAAATAGAGGCT
82373 AAAATAGAGGCT
1 AAAATAGAGGCT
82385 A
1 A
82386 TAGAAAAGGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.08, G:0.24, T:0.16
Consensus pattern (12 bp):
AAAATAGAGGCT
Left flanking sequence: Indices 81861 -- 82360
GGACTTGATCAAGGACGTGGCCCTGGTGATTCCCGAGATGGTGGCCGCGATCAACCACCGGTTGG
GGGCGTCGGAGGACGCGGCGTGGCAGCGGCTGGCGCTCTTGACCCCGTGGAACCACGCGGTGTGG
AGCCACTTGCTGGCGACGATGGCGCTCCAGGTGGCCGAGCTCCGCGAGAACAAGGTGCGGACGCG
GGAGTTGGCGGCGGCGTACGCGGAGACGGCGGACAGGCGGTTTGTCCAGCGGTCGCTTCTTTTGG
TGCCGGGAACGTATATATAAGAAGAAGGCACTTGAATAGAGTCTGCTTGATGATGGAATTCCTGT
AGAGACAATTTGCAGCCATTTGAGTGCGAGGCTTGGCGAGGCTGGGAATGGAAAAACGTCGGGTT
GTTTTACAGCTCCGATGTAGCTTTCTCGTGGACCGAGCTTGGGTTCCGCTCGCGACCAGGGTTTG
TTTAGCGGTCGCTTCTTTGCTTCTTTTGGTGCCGGAACGTATATG
Right flanking sequence: Indices 82386 -- 82885
TAGAAAAGGAGGGTCGCAAAGCGCCATTAATGTAAGGGGAATTCAGTCTGTTTGACCTAGAAATC
AAGGGTGTGTTGTGTAGTTGGAAAATATGGGATATGTGAAGGACGTAGTGGTAAGGAACAGGAAT
TTTTGCACGATGGGTCTACTTAATCACGATATCAGACCAGTAGTACAATTTGCAGCCATTTCAGA
ATTTGAGTGCGAGACTTGAAAAACCGTCGAATTTACAGCTCGTGAGGTATCTCATGGTGACCTAG
CCAGTGTTCCGCTAGCGACCAACTGTCTGCCCAGTGGTCGATTGTTTGTGACGGCGCAATTGAGT
TTTTGAGAGACCCTGAGTTTATTCAATTTATGATTCTCAGACCTAAAGTCAGAGCTGTAGCCAGA
GCTGTAGTCAGACGTGACAATTTGCAGCCATAACGAATCAGAGGCTATACAGCTGAAAATCAAAA
CCACGAAATGAATTTTCTAGCTTTGTATGTTGCTACTGGTGACCT
Found at i:85713 original size:16 final size:16
Alignment explanation
Indices: 85692--85822 Score: 157
Period size: 16 Copynumber: 8.6 Consensus size: 16
85682 GAGGGTTGAG
85692 AGTGAAGAGTTGGTGA
1 AGTGAAGAGTTGGTGA
85708 AGTGAAGAGTTGGTGA
1 AGTGAAGAGTTGGTGA
85724 AGTGAAGAGTTGGTGA
1 AGTGAAGAGTTGGTGA
85740 AGTGAAGAGTT-GTGA
1 AGTGAAGAGTTGGTGA
* *
85755 AGTGAAAAG-T-CTGA
1 AGTGAAGAGTTGGTGA
*
85769 AGTGAAGAG-TCGTGA
1 AGTGAAGAGTTGGTGA
* * *
85784 AATGATG-GTTTGTGA
1 AGTGAAGAGTTGGTGA
*
85799 ATTG-AGAGTTGGTGA
1 AGTGAAGAGTTGGTGA
85814 AGTGAAGAG
1 AGTGAAGAG
85823 AAGGGTTAGT
Statistics
Matches: 100, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
14 15 0.15
15 38 0.38
16 47 0.47
ACGTcount: A:0.33, C:0.02, G:0.40, T:0.26
Consensus pattern (16 bp):
AGTGAAGAGTTGGTGA
Left flanking sequence: Indices 85192 -- 85691
ATCGGGTTGGACGACAGCGCGCCCGTGCCCACCCAGGTGTTCCTCATGAACGAGCCGGTGAAGCC
GTTGACCCACGCACACCACCCGTCGTTGGACCCCCGGCCCACCGACACCGACGAGCTTGACCCCA
AGTACTACGCGCCCCAGCCCACCGAGGAGCTCAACCAGACGCTCCGGCTCCAGAACGGGTGTCCC
ACCTCGCGCGACCTCCACGTGGACTTGCGCACCCACCGCACGGGCTACTTGGGCAACGGCAAGTT
TTCGCCGTCGATCTTTGAGCGGGCGGTGCTTGCGGACGACGAGGACGACGCCAAGCCGCCGGTGC
CGCCCAAGATTCCCCTGGGTCTTCTGGAGCGCGAGTACTACTTGACCGACCGGAAGCTGTACATG
CGCGACATCAGTGGCCACCGGATTTAATGAGGAACGATACGTAGATAATAGAAGGTTAGGGAAGG
ATTAGGGAGGTGAAGGGCGAGTGGAGGTGGTGAGTGAGGGTTGAG
Right flanking sequence: Indices 85823 -- 86322
AAGGGTTAGTGAAAGTGGAGGAATGGTGGTTAAGTATGAGTTGGTAGACGATTGGAGAGTCTCGA
GCGTCGTCCGTGAGATATGGATTGGTTGTGTTGAATGGAGAAAAGACGTTCTAGACCGACTTTGT
TTCCGAGTGGAGAATGAGCTCAATGAGTCATTCGAACACACACTTTGGTTCGCTTACAATGGATG
TACTCAGGTGCCCTACCCATTGCGTCATCGTCTATTGTGTTGGGTACTGTGGTTTTGGTGGAAGC
AGACTACAGACCCTACGGGTGGCAAGTGACTCCTACAAGTGCTGTACCAGTGCTTTGGACCTTGC
AGTAGCGTCATGACGCTCCCCGTGCGTGAGACGCAACGATCGTCTCGATGGTCCGGGTCGTCTCC
ATAGTCCCGTTCGTCTCCAAGGTCCCGTCTCCATGCTCACGGTGGCTGCAAATGGCCGCCATCAC
TCATCACCCACACCACCCACACCCACACCACACCGCTCGTCAACT
Found at i:86219 original size:18 final size:18
Alignment explanation
Indices: 86187--86231 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
86177 GACGCAACGA
* * *
86187 TCGTCTCGATGGTCCGGG
1 TCGTCTCCATAGTCCCGG
*
86205 TCGTCTCCATAGTCCCGT
1 TCGTCTCCATAGTCCCGG
86223 TCGTCTCCA
1 TCGTCTCCA
86232 AGGTCCCGTC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.09, C:0.36, G:0.24, T:0.31
Consensus pattern (18 bp):
TCGTCTCCATAGTCCCGG
Left flanking sequence: Indices 85687 -- 86186
TTGAGAGTGAAGAGTTGGTGAAGTGAAGAGTTGGTGAAGTGAAGAGTTGGTGAAGTGAAGAGTTG
TGAAGTGAAAAGTCTGAAGTGAAGAGTCGTGAAATGATGGTTTGTGAATTGAGAGTTGGTGAAGT
GAAGAGAAGGGTTAGTGAAAGTGGAGGAATGGTGGTTAAGTATGAGTTGGTAGACGATTGGAGAG
TCTCGAGCGTCGTCCGTGAGATATGGATTGGTTGTGTTGAATGGAGAAAAGACGTTCTAGACCGA
CTTTGTTTCCGAGTGGAGAATGAGCTCAATGAGTCATTCGAACACACACTTTGGTTCGCTTACAA
TGGATGTACTCAGGTGCCCTACCCATTGCGTCATCGTCTATTGTGTTGGGTACTGTGGTTTTGGT
GGAAGCAGACTACAGACCCTACGGGTGGCAAGTGACTCCTACAAGTGCTGTACCAGTGCTTTGGA
CCTTGCAGTAGCGTCATGACGCTCCCCGTGCGTGAGACGCAACGA
Right flanking sequence: Indices 86232 -- 86731
AGGTCCCGTCTCCATGCTCACGGTGGCTGCAAATGGCCGCCATCACTCATCACCCACACCACCCA
CACCCACACCACACCGCTCGTCAACTCTTAATTCCGCTCCGTGCTTATCAACCACATTCCTTCTC
CAGCACTCGCCTGCCTCTTTAACTGCGTTTGTTACGCAACCACTGCATCCCACCCATTAGTCCCA
GGGTTAAACCCTGGCAGAACATTGCAACCCTTCTTTGGCACCTTTCGCTCACCTATCGCTCACCT
TTCGCTCCAGCTACCCACCCACGCACGGACAAAGCCCTCGTCCAGCCCGCCACCACAGCCGTCTC
CCTGCACCCCGCTCCCCGCTCGCGTCGGGCTCCCCTCTTGCAGCGACCCGCATCGTCAACCCACG
GCTGTCGCCATCAGCTGATCCGGGCCATCGCCGTCCTTGGCGGTCGTCAAGGCAACCTCGTAATT
CTCCGTAACCTACAGGGACAGCATAGAAACAATTTATTACAACAA
Found at i:86237 original size:18 final size:18
Alignment explanation
Indices: 86205--86240 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
86195 ATGGTCCGGG
86205 TCGTCTCCATAGTCCCGT
1 TCGTCTCCATAGTCCCGT
86223 TCGTCTCCA-AGGTCCCGT
1 TCGTCTCCATA-GTCCCGT
86241 CTCCATGCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 1 0.06
18 16 0.94
ACGTcount: A:0.11, C:0.39, G:0.19, T:0.31
Consensus pattern (18 bp):
TCGTCTCCATAGTCCCGT
Left flanking sequence: Indices 85705 -- 86204
TGAAGTGAAGAGTTGGTGAAGTGAAGAGTTGGTGAAGTGAAGAGTTGTGAAGTGAAAAGTCTGAA
GTGAAGAGTCGTGAAATGATGGTTTGTGAATTGAGAGTTGGTGAAGTGAAGAGAAGGGTTAGTGA
AAGTGGAGGAATGGTGGTTAAGTATGAGTTGGTAGACGATTGGAGAGTCTCGAGCGTCGTCCGTG
AGATATGGATTGGTTGTGTTGAATGGAGAAAAGACGTTCTAGACCGACTTTGTTTCCGAGTGGAG
AATGAGCTCAATGAGTCATTCGAACACACACTTTGGTTCGCTTACAATGGATGTACTCAGGTGCC
CTACCCATTGCGTCATCGTCTATTGTGTTGGGTACTGTGGTTTTGGTGGAAGCAGACTACAGACC
CTACGGGTGGCAAGTGACTCCTACAAGTGCTGTACCAGTGCTTTGGACCTTGCAGTAGCGTCATG
ACGCTCCCCGTGCGTGAGACGCAACGATCGTCTCGATGGTCCGGG
Right flanking sequence: Indices 86241 -- 86740
CTCCATGCTCACGGTGGCTGCAAATGGCCGCCATCACTCATCACCCACACCACCCACACCCACAC
CACACCGCTCGTCAACTCTTAATTCCGCTCCGTGCTTATCAACCACATTCCTTCTCCAGCACTCG
CCTGCCTCTTTAACTGCGTTTGTTACGCAACCACTGCATCCCACCCATTAGTCCCAGGGTTAAAC
CCTGGCAGAACATTGCAACCCTTCTTTGGCACCTTTCGCTCACCTATCGCTCACCTTTCGCTCCA
GCTACCCACCCACGCACGGACAAAGCCCTCGTCCAGCCCGCCACCACAGCCGTCTCCCTGCACCC
CGCTCCCCGCTCGCGTCGGGCTCCCCTCTTGCAGCGACCCGCATCGTCAACCCACGGCTGTCGCC
ATCAGCTGATCCGGGCCATCGCCGTCCTTGGCGGTCGTCAAGGCAACCTCGTAATTCTCCGTAAC
CTACAGGGACAGCATAGAAACAATTTATTACAACAAGATTCCTGA
Found at i:86485 original size:11 final size:11
Alignment explanation
Indices: 86465--86498 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
86455 CCTTCTTTGG
86465 CACCTTTCGCT
1 CACCTTTCGCT
*
86476 CACCTATCGCT
1 CACCTTTCGCT
86487 CACCTTTCGCT
1 CACCTTTCGCT
86498 C
1 C
86499 CAGCTACCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.12, C:0.47, G:0.09, T:0.32
Consensus pattern (11 bp):
CACCTTTCGCT
Left flanking sequence: Indices 85965 -- 86464
AATGAGCTCAATGAGTCATTCGAACACACACTTTGGTTCGCTTACAATGGATGTACTCAGGTGCC
CTACCCATTGCGTCATCGTCTATTGTGTTGGGTACTGTGGTTTTGGTGGAAGCAGACTACAGACC
CTACGGGTGGCAAGTGACTCCTACAAGTGCTGTACCAGTGCTTTGGACCTTGCAGTAGCGTCATG
ACGCTCCCCGTGCGTGAGACGCAACGATCGTCTCGATGGTCCGGGTCGTCTCCATAGTCCCGTTC
GTCTCCAAGGTCCCGTCTCCATGCTCACGGTGGCTGCAAATGGCCGCCATCACTCATCACCCACA
CCACCCACACCCACACCACACCGCTCGTCAACTCTTAATTCCGCTCCGTGCTTATCAACCACATT
CCTTCTCCAGCACTCGCCTGCCTCTTTAACTGCGTTTGTTACGCAACCACTGCATCCCACCCATT
AGTCCCAGGGTTAAACCCTGGCAGAACATTGCAACCCTTCTTTGG
Right flanking sequence: Indices 86499 -- 86998
CAGCTACCCACCCACGCACGGACAAAGCCCTCGTCCAGCCCGCCACCACAGCCGTCTCCCTGCAC
CCCGCTCCCCGCTCGCGTCGGGCTCCCCTCTTGCAGCGACCCGCATCGTCAACCCACGGCTGTCG
CCATCAGCTGATCCGGGCCATCGCCGTCCTTGGCGGTCGTCAAGGCAACCTCGTAATTCTCCGTA
ACCTACAGGGACAGCATAGAAACAATTTATTACAACAAGATTCCTGAGTTAAATAACCAGTAATG
ATACAACGTGACACATAAGAAGTGAATAGAGCTCACCCGTAACGCGGGTGAGGGTATTAAATCAA
CGCAGCAAGCGCAGCAGCAACGGCAATCGCCGAAACACCGAACACACCGGCACCGTTCTTGTCAG
CAGACGCCAGAGCAGTGGTCTTGGCCTCGGACTCCGAGGTGGCCAGGGCCTCCGCCAGCGACACA
ACCGACGACAACGACGTCACCAGCAGCAAGTCCAGCTCGGTGGAA
Found at i:87123 original size:18 final size:18
Alignment explanation
Indices: 87100--87180 Score: 72
Period size: 18 Copynumber: 4.5 Consensus size: 18
87090 AAGCAGACGA
*
87100 CACCAGGGCCACAGAGGC
1 CACCAGGGCAACAGAGGC
* *
87118 CGCCAGGGCAACCGAGGC
1 CACCAGGGCAACAGAGGC
* *
87136 CACCAGGGCAGCGGAGGC
1 CACCAGGGCAACAGAGGC
* * * *
87154 AACCAGCGCCACCGAGGC
1 CACCAGGGCAACAGAGGC
*
87172 AACCAGGGC
1 CACCAGGGC
87181 CTCCAGAGCA
Statistics
Matches: 51, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 51 1.00
ACGTcount: A:0.26, C:0.38, G:0.36, T:0.00
Consensus pattern (18 bp):
CACCAGGGCAACAGAGGC
Left flanking sequence: Indices 86600 -- 87099
CGACCCGCATCGTCAACCCACGGCTGTCGCCATCAGCTGATCCGGGCCATCGCCGTCCTTGGCGG
TCGTCAAGGCAACCTCGTAATTCTCCGTAACCTACAGGGACAGCATAGAAACAATTTATTACAAC
AAGATTCCTGAGTTAAATAACCAGTAATGATACAACGTGACACATAAGAAGTGAATAGAGCTCAC
CCGTAACGCGGGTGAGGGTATTAAATCAACGCAGCAAGCGCAGCAGCAACGGCAATCGCCGAAAC
ACCGAACACACCGGCACCGTTCTTGTCAGCAGACGCCAGAGCAGTGGTCTTGGCCTCGGACTCCG
AGGTGGCCAGGGCCTCCGCCAGCGACACAACCGACGACAACGACGTCACCAGCAGCAAGTCCAGC
TCGGTGGAAGTAGAGTTGGCCAGGGCAACGGCAACAATGCCCTTGAACGCCGACAAAGAGGTGGT
TCTGGCGGCTTCGGCCTTCTTGCGGGCCGCGGCAGAAGCAGACGA
Right flanking sequence: Indices 87181 -- 87680
CTCCAGAGCAGCGACAGCCTCGTCGGCGGCCTTGCGGTCGGCCTCCTCCTGGGCGTCTCTCAGGG
CCTGGGCAGCAACAGAGGCCACCAGGGCAGCGGACGCAGCGGACGCCTCCAGGGCCAGCGAGATC
AGCGCCAAAAGCGCCTCGTCAGGGGACAACAGGGTGACGGTGACGGTGATGGTGGAGGAAATGGT
GGTGATTTCCTCAGCAAGGGCGGCAACGGCCAAAAGTAAGGTGGTAAAACGCATAGTGAGTGACT
AGGGTGGGCGACAGGCGTCGAAAGGAAAGACTGGGGTGGGTAAAAGAGTGGACGGGGTAGATAAC
CTTAAAGAAAAAAAGCCGCTGCTTCTCAGAAAACTGTGTTGGAGCCATACAGGAGTCCTGCACCC
GGCCCACGGATCGACCCAACGGGAGATCATATGAGGTGCGTTCCCGGTGGCGACACGACTAAAAC
ACGACGAATAGTGCGTATTTGCGAGCGGGACCGATGCGGTAATAT
Found at i:87140 original size:36 final size:37
Alignment explanation
Indices: 87100--87181 Score: 96
Period size: 36 Copynumber: 2.3 Consensus size: 37
87090 AAGCAGACGA
** *
87100 CACCAGGGCCA-CAGAGGCCGCCAGGGCAACCGAGGC
1 CACCAGGGCCAGCAGAGGCAACCAGCGCAACCGAGGC
* *
87136 CACCAGGG-CAGCGGAGGCAACCAGCGCCACCGAGGC
1 CACCAGGGCCAGCAGAGGCAACCAGCGCAACCGAGGC
*
87172 AACCAGGGCC
1 CACCAGGGCC
87182 TCCAGAGCAG
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
35 2 0.05
36 35 0.92
37 1 0.03
ACGTcount: A:0.26, C:0.39, G:0.35, T:0.00
Consensus pattern (37 bp):
CACCAGGGCCAGCAGAGGCAACCAGCGCAACCGAGGC
Left flanking sequence: Indices 86600 -- 87099
CGACCCGCATCGTCAACCCACGGCTGTCGCCATCAGCTGATCCGGGCCATCGCCGTCCTTGGCGG
TCGTCAAGGCAACCTCGTAATTCTCCGTAACCTACAGGGACAGCATAGAAACAATTTATTACAAC
AAGATTCCTGAGTTAAATAACCAGTAATGATACAACGTGACACATAAGAAGTGAATAGAGCTCAC
CCGTAACGCGGGTGAGGGTATTAAATCAACGCAGCAAGCGCAGCAGCAACGGCAATCGCCGAAAC
ACCGAACACACCGGCACCGTTCTTGTCAGCAGACGCCAGAGCAGTGGTCTTGGCCTCGGACTCCG
AGGTGGCCAGGGCCTCCGCCAGCGACACAACCGACGACAACGACGTCACCAGCAGCAAGTCCAGC
TCGGTGGAAGTAGAGTTGGCCAGGGCAACGGCAACAATGCCCTTGAACGCCGACAAAGAGGTGGT
TCTGGCGGCTTCGGCCTTCTTGCGGGCCGCGGCAGAAGCAGACGA
Right flanking sequence: Indices 87182 -- 87681
TCCAGAGCAGCGACAGCCTCGTCGGCGGCCTTGCGGTCGGCCTCCTCCTGGGCGTCTCTCAGGGC
CTGGGCAGCAACAGAGGCCACCAGGGCAGCGGACGCAGCGGACGCCTCCAGGGCCAGCGAGATCA
GCGCCAAAAGCGCCTCGTCAGGGGACAACAGGGTGACGGTGACGGTGATGGTGGAGGAAATGGTG
GTGATTTCCTCAGCAAGGGCGGCAACGGCCAAAAGTAAGGTGGTAAAACGCATAGTGAGTGACTA
GGGTGGGCGACAGGCGTCGAAAGGAAAGACTGGGGTGGGTAAAAGAGTGGACGGGGTAGATAACC
TTAAAGAAAAAAAGCCGCTGCTTCTCAGAAAACTGTGTTGGAGCCATACAGGAGTCCTGCACCCG
GCCCACGGATCGACCCAACGGGAGATCATATGAGGTGCGTTCCCGGTGGCGACACGACTAAAACA
CGACGAATAGTGCGTATTTGCGAGCGGGACCGATGCGGTAATATG
Found at i:92884 original size:23 final size:23
Alignment explanation
Indices: 92814--92885 Score: 96
Period size: 23 Copynumber: 3.2 Consensus size: 23
92804 GAATGGTAGA
92814 GAGGAGAAGAGTGAGGAAAGAGG
1 GAGGAGAAGAGTGAGGAAAGAGG
*
92837 GA-GATAAGGAG-GAGGAAATGA-G
1 GAGGAGAA-GAGTGAGGAAA-GAGG
92859 GAGGAGAAGAGTGAGGAAAGAGG
1 GAGGAGAAGAGTGAGGAAAGAGG
92882 GAGG
1 GAGG
92886 TAGTGAGGAG
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
22 19 0.45
23 23 0.55
ACGTcount: A:0.43, C:0.00, G:0.51, T:0.06
Consensus pattern (23 bp):
GAGGAGAAGAGTGAGGAAAGAGG
Left flanking sequence: Indices 92314 -- 92813
CTGCTGGCCAAGTTCAACTTCAAGCCCAAACCCACCCAAGGGCTCATCCACAACCCACCCCACGC
CATCCACAAACCCGTCATGAAGACCCCCACAGCATTTTTGCCGGCCTCGGACCCGAGAAAGCAGT
TGCCCGCGGAGCAGTACACGGCCGCGGAGCTCGAGAGCTACCCGGTGATCCACGCCCACCGTGCG
GTGGCTGACCGCGCCTACGACGTGACCCCTGAGACGGTGGCCGAGATCGTCAAATTGAGACAGGA
GGATCCCACGCAGTGGACGATCTCCAAGCTCGCCAAGAAGTTTGGCGTGGCGCAGAATGTGGTCA
ACGTAGTGTCGGGCACGCTCAAAGACAAGCCGCAGGTGGTGGAGACCCCCACCATGGAGGAGCGC
CGCAAGCGCCGGATGATGTGGTTGAGAGGGGAGTTTTAGGATCATGTACATAGCACGAATCATAA
CGAATGGGAAGGGAGCAGTGTAGGAAGGTGATGGAGAATGGTAGA
Right flanking sequence: Indices 92886 -- 93385
TAGTGAGGAGGGGGAGAGGGTTAATGGAGGAAATCAAAAACAGGCTAGCCATACGACCGAAGAAC
AAAGGTTGGAAGTAACAGGCACTGGTCGACCGGGACCTGCTGGTGGTTATCTCACCTGACTCTCG
TAACCTCTTCTTCGAGTTTTAAGGTTTCAGCCCAAGCCCACCAAGTCGCGCACCACGTTTATAAT
TGTATCGCAAAGTAAAGCACAAAAGCACAGACATTTGTAACGTCAAGTATTCCACGGAATTGAGC
CTCACATCCCCACCTCCCCACCCTTCTCTTTTAGAATCGTATCCCACTCTCTTCTTCTTTCCTCC
ACCTTCAGTCTTTTTCGCGCGCAAACGCATCCGACGAACCATACCATGTCTGAAGCCGCGGAGTC
CCACGAGGGCCAGAACCAGGGCCAGCACGGCCACAGCCACCAGGGCCAGGGCCACCAGGGTCACC
AGGGCCACCACGAGCACAGACACCACGACGGCGACAGACCCCGTG
Found at i:92885 original size:11 final size:12
Alignment explanation
Indices: 92814--92885 Score: 57
Period size: 11 Copynumber: 6.3 Consensus size: 12
92804 GAATGGTAGA
*
92814 GAGGAGAAGAGT
1 GAGGAGAAGAGG
92826 GAGGA-AAGAGG
1 GAGGAGAAGAGG
*
92837 GA-GATAAG-GAG
1 GAGGAGAAGAG-G
92848 GAGGA-AATGA-G
1 GAGGAGAA-GAGG
*
92859 GAGGAGAAGAGT
1 GAGGAGAAGAGG
92871 GAGGA-AAGAGG
1 GAGGAGAAGAGG
92882 GAGG
1 GAGG
92886 TAGTGAGGAG
Statistics
Matches: 50, Mismatches: 3, Indels: 15
0.74 0.04 0.22
Matches are distributed among these distances:
10 3 0.06
11 32 0.64
12 15 0.30
ACGTcount: A:0.43, C:0.00, G:0.51, T:0.06
Consensus pattern (12 bp):
GAGGAGAAGAGG
Left flanking sequence: Indices 92314 -- 92813
CTGCTGGCCAAGTTCAACTTCAAGCCCAAACCCACCCAAGGGCTCATCCACAACCCACCCCACGC
CATCCACAAACCCGTCATGAAGACCCCCACAGCATTTTTGCCGGCCTCGGACCCGAGAAAGCAGT
TGCCCGCGGAGCAGTACACGGCCGCGGAGCTCGAGAGCTACCCGGTGATCCACGCCCACCGTGCG
GTGGCTGACCGCGCCTACGACGTGACCCCTGAGACGGTGGCCGAGATCGTCAAATTGAGACAGGA
GGATCCCACGCAGTGGACGATCTCCAAGCTCGCCAAGAAGTTTGGCGTGGCGCAGAATGTGGTCA
ACGTAGTGTCGGGCACGCTCAAAGACAAGCCGCAGGTGGTGGAGACCCCCACCATGGAGGAGCGC
CGCAAGCGCCGGATGATGTGGTTGAGAGGGGAGTTTTAGGATCATGTACATAGCACGAATCATAA
CGAATGGGAAGGGAGCAGTGTAGGAAGGTGATGGAGAATGGTAGA
Right flanking sequence: Indices 92886 -- 93385
TAGTGAGGAGGGGGAGAGGGTTAATGGAGGAAATCAAAAACAGGCTAGCCATACGACCGAAGAAC
AAAGGTTGGAAGTAACAGGCACTGGTCGACCGGGACCTGCTGGTGGTTATCTCACCTGACTCTCG
TAACCTCTTCTTCGAGTTTTAAGGTTTCAGCCCAAGCCCACCAAGTCGCGCACCACGTTTATAAT
TGTATCGCAAAGTAAAGCACAAAAGCACAGACATTTGTAACGTCAAGTATTCCACGGAATTGAGC
CTCACATCCCCACCTCCCCACCCTTCTCTTTTAGAATCGTATCCCACTCTCTTCTTCTTTCCTCC
ACCTTCAGTCTTTTTCGCGCGCAAACGCATCCGACGAACCATACCATGTCTGAAGCCGCGGAGTC
CCACGAGGGCCAGAACCAGGGCCAGCACGGCCACAGCCACCAGGGCCAGGGCCACCAGGGTCACC
AGGGCCACCACGAGCACAGACACCACGACGGCGACAGACCCCGTG
Found at i:93323 original size:9 final size:9
Alignment explanation
Indices: 93290--93350 Score: 53
Period size: 9 Copynumber: 7.4 Consensus size: 9
93280 GAGGGCCAGA
93290 ACCAGGGCC
1 ACCAGGGCC
* *
93299 AGCACGGCC
1 ACCAGGGCC
93308 A-CA--GCC
1 ACCAGGGCC
93314 ACCAGGG--
1 ACCAGGGCC
93321 -CCAGGGCC
1 ACCAGGGCC
*
93329 ACCAGGGTC
1 ACCAGGGCC
93338 ACCAGGGCC
1 ACCAGGGCC
93347 ACCA
1 ACCA
93351 CGAGCACAGA
Statistics
Matches: 42, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
6 10 0.24
7 2 0.05
8 2 0.05
9 28 0.67
ACGTcount: A:0.25, C:0.43, G:0.31, T:0.02
Consensus pattern (9 bp):
ACCAGGGCC
Left flanking sequence: Indices 92790 -- 93289
AGGAAGGTGATGGAGAATGGTAGAGAGGAGAAGAGTGAGGAAAGAGGGAGATAAGGAGGAGGAAA
TGAGGAGGAGAAGAGTGAGGAAAGAGGGAGGTAGTGAGGAGGGGGAGAGGGTTAATGGAGGAAAT
CAAAAACAGGCTAGCCATACGACCGAAGAACAAAGGTTGGAAGTAACAGGCACTGGTCGACCGGG
ACCTGCTGGTGGTTATCTCACCTGACTCTCGTAACCTCTTCTTCGAGTTTTAAGGTTTCAGCCCA
AGCCCACCAAGTCGCGCACCACGTTTATAATTGTATCGCAAAGTAAAGCACAAAAGCACAGACAT
TTGTAACGTCAAGTATTCCACGGAATTGAGCCTCACATCCCCACCTCCCCACCCTTCTCTTTTAG
AATCGTATCCCACTCTCTTCTTCTTTCCTCCACCTTCAGTCTTTTTCGCGCGCAAACGCATCCGA
CGAACCATACCATGTCTGAAGCCGCGGAGTCCCACGAGGGCCAGA
Right flanking sequence: Indices 93351 -- 93850
CGAGCACAGACACCACGACGGCGACAGACCCCGTGGCGACAGAGACCACAATGAGGTAAGTACCC
TCCCCTCCGCCTCCTCCTCCCCTCCCAGTACTAACTTCCAGCGTCGAAGACGGCCCCAAAACAAG
CAGGACGGCCCCAAGCGCGAGGCAATCCTTGACTTGAACCAGTACAAGGACACCCAGATCCGCGT
CAAGTTCATTGGCGGCCGCCAGATCGTCGGTGTGCTCAAGGGGTTCGACCAGTTGATGAACCTCG
TGATGGACGACGTTGAGGAGACGATGCGCGACCCTCACGACGACACCGTGTTGACGGGCGAGACC
CGCAAGTTGGGGTTTGTGGTGGTGCGGTGCACCAGTCTCTTGACGATCTCGCCTGTGGACGGTTC
CCACGAGATTGCCAACCCGTTCCTCGGGCCTGGAGACGACCAGTAGGGGTATGTACTATAGAATA
TAAGTGTCAAAAGGGTGTGTGGGGTTGTGGAGGAGGTAATTGTAA
Found at i:94083 original size:16 final size:16
Alignment explanation
Indices: 94059--94117 Score: 100
Period size: 16 Copynumber: 3.6 Consensus size: 16
94049 CCCACTTCAA
94059 TTGGCCACCACACCCTC
1 TTGG-CACCACACCCTC
94076 TTGGCACCACACCCTC
1 TTGGCACCACACCCTC
*
94092 TTGGCACCAAACCCTC
1 TTGGCACCACACCCTC
94108 TTGGCACCAC
1 TTGGCACCAC
94118 CATCATGCAC
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
16 36 0.90
17 4 0.10
ACGTcount: A:0.20, C:0.47, G:0.14, T:0.19
Consensus pattern (16 bp):
TTGGCACCACACCCTC
Left flanking sequence: Indices 93559 -- 94058
GGCCGCCAGATCGTCGGTGTGCTCAAGGGGTTCGACCAGTTGATGAACCTCGTGATGGACGACGT
TGAGGAGACGATGCGCGACCCTCACGACGACACCGTGTTGACGGGCGAGACCCGCAAGTTGGGGT
TTGTGGTGGTGCGGTGCACCAGTCTCTTGACGATCTCGCCTGTGGACGGTTCCCACGAGATTGCC
AACCCGTTCCTCGGGCCTGGAGACGACCAGTAGGGGTATGTACTATAGAATATAAGTGTCAAAAG
GGTGTGTGGGGTTGTGGAGGAGGTAATTGTAAGCGTTCGAGGAGGAGTACTACGAACAAAACTCC
CCGCGGTGCTTTTGTCTTATCTCGTGTTGAGGACGCTAGAGTAGATAAACATTCGAATCATTGAT
TGTCGTGCAATTGGTTGCGTCTTGCTTAATTACACGTCTAATTGGGCTAGTAACTTCATTTTAAG
ATATTACATGTCCACCAAATTCCACCAAACACTACCCCACTTCAA
Right flanking sequence: Indices 94118 -- 94617
CATCATGCACGGAAGGTGTCAACCGCTAAGAGAATACCATTCGGGCTTTTTTCCCCACTGCATCG
ACTTATCATCCCACCCGCATCGCGAATTTTTCCCCACCCCATGTCCCTGAACAACAGCTACCAGC
CCAACGACAACTGCATTCTTTTGCGCCAGACCAACCAGCTCCACGGGCTTTACCTGATCATCCGT
GACCAGGACACCAAGCGCGGGGACTTTGTGTTCTACTCCGACCGCATCATTCGCTTGCTTGTGGA
GGAGGGGCTCAACCTCTTGCCCGTGGAGGAGACCGAGATCAAGTGCCACGGCGACAACAGCTACA
AGGGCGCCCGGTTCTTGGGCAAGATCTGCGGGGTGCTGATTGTCCGTGCCGGCGAGCTGATGGAG
ATGGGTCTCCGTGACTGCTGCCGGTCGGTGCGTATCGGGAAGATCTTGATCCAGCGGGACGAGGA
GACGGCGATGCCCAAGTTGTTTTACGAGAAGTTGCCTGCGGACAT
Found at i:96683 original size:15 final size:15
Alignment explanation
Indices: 96629--96687 Score: 66
Period size: 15 Copynumber: 4.0 Consensus size: 15
96619 AGTCGCCCAT
*
96629 GGTTGTGTG-GGTGA
1 GGTTGGGTGTGGTGA
*
96643 GGTTGGGTGTGGTGT
1 GGTTGGGTGTGGTGA
* **
96658 GGGTGAATGTGGTGA
1 GGTTGGGTGTGGTGA
96673 GGTTGGGTGTGGTGA
1 GGTTGGGTGTGGTGA
96688 CTGGTGGACT
Statistics
Matches: 35, Mismatches: 9, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
14 8 0.23
15 27 0.77
ACGTcount: A:0.08, C:0.00, G:0.58, T:0.34
Consensus pattern (15 bp):
GGTTGGGTGTGGTGA
Left flanking sequence: Indices 96129 -- 96628
ACCACGTGCGACACCCCGTCGCCCAGGTCCACCACCACCCCGGTGGTGCGGCCCAGCGCGTACAA
CGCGAGCACTGCCTGGATCAGCACATACAAAGTGGGCACGTTCATCTGCTCAAATAGCACCTGGG
CCATGCGGTCGCGGTTGGACCGAGGGTTCAACGGGGCCTCGGTGATCAAGAGCGGGTGCTCCTCT
GGGTTGGCCTTGAGGTCCACCGCGTAGCTGTGGCTCCACACCCGCTGCATGTCGTCCCAGCAGGT
GACGACGCCGTGCTCGAGCGGATACAGCAACCGGAGCAATCCTCGGTGCTGCTGGGCCTGGTCGC
CCACGTAGGTAGCGTCGGGACCCCCGTCGTCGCTCGCGGTCATGATCTTCTGGTACTTTGGCCGG
CCCACGATGGCCAGCGCGTACAGCTTGGGGATGTCCTCGCCGGCAAACCCGGCCTTGAGGGTGCC
CGACCCGTTGTCTAGGACAACCGGCTGGTTGTACAAGTCGCCCAT
Right flanking sequence: Indices 96688 -- 97187
CTGGTGGACTGGTACCGTGTTGTTTACTCCTGTGTATAGTTGCGAAAAGTGGAGGGGAAGGTTAC
GAAGACGAGGTAGCGGTGAGGGGGAAAGAGGTAGTAGTGGGTGTAGGGGAGTGGTGATAGATCTT
ATTGAGGGTTTTTTGGTGGGTAGTTGTTTGGGTGGTGTTTGGGTGGTGTTTGGGTGGTTGTTTGG
GTGGTTCTTTGGGCGGGTTTTGTTTAGGTGTGTTGTGTGTAGTGCGTTAAGGTATTTGTATGGTT
GTGTGATTGTGTGTTTAAATGCTTTGCATGTGGTGGTTCACTACACGACATTCCTTTCCCCTTGG
TTTTCTTCTATCACCCCCAAGCGTGACCCTTTTTCAGTGACGTATCATTCTTCACGATCCATTTC
CACATCTAGCCCACTGTTTACTTGTTCCCACCACCACGCGCGCATACGACCATGAGCGCGTTAAA
CACGCTAAGTACCAACCAAAAGACCCAGCTACGCCATGCGTTCAC
Found at i:96849 original size:12 final size:11
Alignment explanation
Indices: 96834--96895 Score: 70
Period size: 12 Copynumber: 5.4 Consensus size: 11
96824 GGTTTTTTGG
96834 TGGGTAGTTGTT
1 TGGGT-GTTGTT
*
96846 TGGGTGGTGTT
1 TGGGTGTTGTT
*
96857 TGGGTGGTGTT
1 TGGGTGTTGTT
96868 TGGGTGGTTGTT
1 TGGGT-GTTGTT
*
96880 TGGGTGGTTCTT
1 TGGGT-GTTGTT
96892 TGGG
1 TGGG
96896 CGGGTTTTGT
Statistics
Matches: 46, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
11 21 0.46
12 25 0.54
ACGTcount: A:0.02, C:0.02, G:0.50, T:0.47
Consensus pattern (11 bp):
TGGGTGTTGTT
Left flanking sequence: Indices 96334 -- 96833
TGAGGTCCACCGCGTAGCTGTGGCTCCACACCCGCTGCATGTCGTCCCAGCAGGTGACGACGCCG
TGCTCGAGCGGATACAGCAACCGGAGCAATCCTCGGTGCTGCTGGGCCTGGTCGCCCACGTAGGT
AGCGTCGGGACCCCCGTCGTCGCTCGCGGTCATGATCTTCTGGTACTTTGGCCGGCCCACGATGG
CCAGCGCGTACAGCTTGGGGATGTCCTCGCCGGCAAACCCGGCCTTGAGGGTGCCCGACCCGTTG
TCTAGGACAACCGGCTGGTTGTACAAGTCGCCCATGGTTGTGTGGGTGAGGTTGGGTGTGGTGTG
GGTGAATGTGGTGAGGTTGGGTGTGGTGACTGGTGGACTGGTACCGTGTTGTTTACTCCTGTGTA
TAGTTGCGAAAAGTGGAGGGGAAGGTTACGAAGACGAGGTAGCGGTGAGGGGGAAAGAGGTAGTA
GTGGGTGTAGGGGAGTGGTGATAGATCTTATTGAGGGTTTTTTGG
Right flanking sequence: Indices 96896 -- 97395
CGGGTTTTGTTTAGGTGTGTTGTGTGTAGTGCGTTAAGGTATTTGTATGGTTGTGTGATTGTGTG
TTTAAATGCTTTGCATGTGGTGGTTCACTACACGACATTCCTTTCCCCTTGGTTTTCTTCTATCA
CCCCCAAGCGTGACCCTTTTTCAGTGACGTATCATTCTTCACGATCCATTTCCACATCTAGCCCA
CTGTTTACTTGTTCCCACCACCACGCGCGCATACGACCATGAGCGCGTTAAACACGCTAAGTACC
AACCAAAAGACCCAGCTACGCCATGCGTTCACGTTGATCGACGGCGATCTGCGCGACTCCACCAT
CACCAAACAGGACCTCGTCAACTTGTACGCCCAGTTGGGGCTTGCGGCGCCGCTGGTCGCCCAGC
TTGACGAGATGTTGGCGGTGGGCGACGGCGGCGACGGCAAGGGGATCAACTTTGCCCAGTTTTCC
AACATCATGGCCAAGGAGTTCGCCCAGTTCGACAACCGCATGACC
Found at i:96858 original size:11 final size:11
Alignment explanation
Indices: 96842--96887 Score: 83
Period size: 11 Copynumber: 4.1 Consensus size: 11
96832 GGTGGGTAGT
96842 TGTTTGGGTGG
1 TGTTTGGGTGG
96853 TGTTTGGGTGG
1 TGTTTGGGTGG
96864 TGTTTGGGTGG
1 TGTTTGGGTGG
96875 TTGTTTGGGTGG
1 -TGTTTGGGTGG
96887 T
1 T
96888 TCTTTGGGCG
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
11 23 0.68
12 11 0.32
ACGTcount: A:0.00, C:0.00, G:0.52, T:0.48
Consensus pattern (11 bp):
TGTTTGGGTGG
Left flanking sequence: Indices 96342 -- 96841
ACCGCGTAGCTGTGGCTCCACACCCGCTGCATGTCGTCCCAGCAGGTGACGACGCCGTGCTCGAG
CGGATACAGCAACCGGAGCAATCCTCGGTGCTGCTGGGCCTGGTCGCCCACGTAGGTAGCGTCGG
GACCCCCGTCGTCGCTCGCGGTCATGATCTTCTGGTACTTTGGCCGGCCCACGATGGCCAGCGCG
TACAGCTTGGGGATGTCCTCGCCGGCAAACCCGGCCTTGAGGGTGCCCGACCCGTTGTCTAGGAC
AACCGGCTGGTTGTACAAGTCGCCCATGGTTGTGTGGGTGAGGTTGGGTGTGGTGTGGGTGAATG
TGGTGAGGTTGGGTGTGGTGACTGGTGGACTGGTACCGTGTTGTTTACTCCTGTGTATAGTTGCG
AAAAGTGGAGGGGAAGGTTACGAAGACGAGGTAGCGGTGAGGGGGAAAGAGGTAGTAGTGGGTGT
AGGGGAGTGGTGATAGATCTTATTGAGGGTTTTTTGGTGGGTAGT
Right flanking sequence: Indices 96888 -- 97387
TCTTTGGGCGGGTTTTGTTTAGGTGTGTTGTGTGTAGTGCGTTAAGGTATTTGTATGGTTGTGTG
ATTGTGTGTTTAAATGCTTTGCATGTGGTGGTTCACTACACGACATTCCTTTCCCCTTGGTTTTC
TTCTATCACCCCCAAGCGTGACCCTTTTTCAGTGACGTATCATTCTTCACGATCCATTTCCACAT
CTAGCCCACTGTTTACTTGTTCCCACCACCACGCGCGCATACGACCATGAGCGCGTTAAACACGC
TAAGTACCAACCAAAAGACCCAGCTACGCCATGCGTTCACGTTGATCGACGGCGATCTGCGCGAC
TCCACCATCACCAAACAGGACCTCGTCAACTTGTACGCCCAGTTGGGGCTTGCGGCGCCGCTGGT
CGCCCAGCTTGACGAGATGTTGGCGGTGGGCGACGGCGGCGACGGCAAGGGGATCAACTTTGCCC
AGTTTTCCAACATCATGGCCAAGGAGTTCGCCCAGTTCGACAACC
Found at i:96904 original size:23 final size:23
Alignment explanation
Indices: 96851--96904 Score: 65
Period size: 23 Copynumber: 2.3 Consensus size: 23
96841 TTGTTTGGGT
* *
96851 GGTGTTTGGGTGGTGTTTGGGTG
1 GGTGTTTGGGTGGTCTTTGGGCG
*
96874 GTTGTTTGGGTGGTTCTTTGGGCG
1 GGTGTTTGGGTGG-TCTTTGGGCG
96898 GGT-TTTG
1 GGTGTTTG
96905 TTTAGGTGTG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
23 16 0.62
24 10 0.38
ACGTcount: A:0.00, C:0.04, G:0.50, T:0.46
Consensus pattern (23 bp):
GGTGTTTGGGTGGTCTTTGGGCG
Left flanking sequence: Indices 96351 -- 96850
CTGTGGCTCCACACCCGCTGCATGTCGTCCCAGCAGGTGACGACGCCGTGCTCGAGCGGATACAG
CAACCGGAGCAATCCTCGGTGCTGCTGGGCCTGGTCGCCCACGTAGGTAGCGTCGGGACCCCCGT
CGTCGCTCGCGGTCATGATCTTCTGGTACTTTGGCCGGCCCACGATGGCCAGCGCGTACAGCTTG
GGGATGTCCTCGCCGGCAAACCCGGCCTTGAGGGTGCCCGACCCGTTGTCTAGGACAACCGGCTG
GTTGTACAAGTCGCCCATGGTTGTGTGGGTGAGGTTGGGTGTGGTGTGGGTGAATGTGGTGAGGT
TGGGTGTGGTGACTGGTGGACTGGTACCGTGTTGTTTACTCCTGTGTATAGTTGCGAAAAGTGGA
GGGGAAGGTTACGAAGACGAGGTAGCGGTGAGGGGGAAAGAGGTAGTAGTGGGTGTAGGGGAGTG
GTGATAGATCTTATTGAGGGTTTTTTGGTGGGTAGTTGTTTGGGT
Right flanking sequence: Indices 96905 -- 97404
TTTAGGTGTGTTGTGTGTAGTGCGTTAAGGTATTTGTATGGTTGTGTGATTGTGTGTTTAAATGC
TTTGCATGTGGTGGTTCACTACACGACATTCCTTTCCCCTTGGTTTTCTTCTATCACCCCCAAGC
GTGACCCTTTTTCAGTGACGTATCATTCTTCACGATCCATTTCCACATCTAGCCCACTGTTTACT
TGTTCCCACCACCACGCGCGCATACGACCATGAGCGCGTTAAACACGCTAAGTACCAACCAAAAG
ACCCAGCTACGCCATGCGTTCACGTTGATCGACGGCGATCTGCGCGACTCCACCATCACCAAACA
GGACCTCGTCAACTTGTACGCCCAGTTGGGGCTTGCGGCGCCGCTGGTCGCCCAGCTTGACGAGA
TGTTGGCGGTGGGCGACGGCGGCGACGGCAAGGGGATCAACTTTGCCCAGTTTTCCAACATCATG
GCCAAGGAGTTCGCCCAGTTCGACAACCGCATGACCATCTACAAC
Found at i:100731 original size:2 final size:2
Alignment explanation
Indices: 100724--100758 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
100714 AGTTGATTTA
*
100724 CT CT CT CT CT CT CT CT CT CT CT CT TT CT CT CT CT C
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
100759 CAAAATCAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
CT
Left flanking sequence: Indices 100224 -- 100723
TTCAGGGTGATTTTGGTACTGGTTGTCTATTTTGATGGTTAGGTTGATTGTTTTTCAGTTTGAAG
ATGGCAACGGTGTAGGGTACGGGCAACTTCGAAACCCACCGCATTTCTGAAGAGTCCTTATCACT
ATCCTGGAGAAAAGGTTTGTTTGATTCGATCTCGAGAGTCTCGAAGACCCGTTGTAGCCACTCGA
AGTGAAGATTATTGAACATACCTAATTCTGAACTACGTCACAAGAGACATTAAGCAAGAGTAGCG
AAAGCGATATCGGGGAGGTTTGGGTAGTTTTCGGGTGGGGACTGTTAATTGATACCACAGTCGTG
ATATTCAGCATTTATGTTCCGCACTGTCTCAGTCCTCGACGGCATGACCGGTGGCTTTTGACCAA
CTTTGGAAACCAATACCACCTGTATGATATTACACCACACTAGTGTAATGTAAACCAGGCAATTG
ACAATTAATCAGAATCGATTCCAACGATTATTCAAAGTTGATTTA
Right flanking sequence: Indices 100759 -- 101258
CAAAATCAACTCGTTCGTTCTCACCACCACCTTCACCTCCAACGAGACCATTATGATTAACCACC
GACCAACAGCCAACCCAATCGGTCTCGTCACAAGACCACCATGACTAGACTCCTACCTCATCCCA
TTCCCAATTGCTGACCGTTATCTCCTCTCAGCCGCACCACCGCGATCCACTGAACCACCTCGAGC
TCTCTCCTACTACTCGCACCGCACCCCTCACCCGTCACTAACCCGTTCTTCACCCACACTAAACC
CTCTATACTCATCACTCGTCACCTACTCACCTACTCACACTACTCACCCACCCTTCTACTAAACC
CCTAACCTCACCACCTTCACCTACCACTCGCATCCCGCAGTGAAAAATTTAATCAGCGAAAAAAT
TTCACTATCCATTATGAGCTACGACGATATTGAAAACGCCGTGCCCGACATCGTCATCGGAGGCG
ATGTGGCGGTGGACGACGACGCAGAGGTTGTCTACGAACACGAGG
Found at i:101050 original size:8 final size:8
Alignment explanation
Indices: 101037--101066 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
101027 TCATCACTCG
101037 TCACCTAC
1 TCACCTAC
101045 TCACCTAC
1 TCACCTAC
101053 TCACACTAC
1 TCAC-CTAC
101062 TCACC
1 TCACC
101067 CACCCTTCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 13 0.62
9 8 0.38
ACGTcount: A:0.27, C:0.50, G:0.00, T:0.23
Consensus pattern (8 bp):
TCACCTAC
Left flanking sequence: Indices 100537 -- 101036
ACCACAGTCGTGATATTCAGCATTTATGTTCCGCACTGTCTCAGTCCTCGACGGCATGACCGGTG
GCTTTTGACCAACTTTGGAAACCAATACCACCTGTATGATATTACACCACACTAGTGTAATGTAA
ACCAGGCAATTGACAATTAATCAGAATCGATTCCAACGATTATTCAAAGTTGATTTACTCTCTCT
CTCTCTCTCTCTCTCTTTCTCTCTCTCCAAAATCAACTCGTTCGTTCTCACCACCACCTTCACCT
CCAACGAGACCATTATGATTAACCACCGACCAACAGCCAACCCAATCGGTCTCGTCACAAGACCA
CCATGACTAGACTCCTACCTCATCCCATTCCCAATTGCTGACCGTTATCTCCTCTCAGCCGCACC
ACCGCGATCCACTGAACCACCTCGAGCTCTCTCCTACTACTCGCACCGCACCCCTCACCCGTCAC
TAACCCGTTCTTCACCCACACTAAACCCTCTATACTCATCACTCG
Right flanking sequence: Indices 101067 -- 101566
CACCCTTCTACTAAACCCCTAACCTCACCACCTTCACCTACCACTCGCATCCCGCAGTGAAAAAT
TTAATCAGCGAAAAAATTTCACTATCCATTATGAGCTACGACGATATTGAAAACGCCGTGCCCGA
CATCGTCATCGGAGGCGATGTGGCGGTGGACGACGACGCAGAGGTTGTCTACGAACACGAGGTTG
AGGAGTTGCCCCAGGAAGAGGAGGAGGAGCCCGCCAAGGAAAAGAAGCTGGTGGCGTTTGCCGTC
GAGGAGGACTACGACGAGGAGGCGGCCAAGCGCGAGTTCGAGGAAGGCGGCGGGTTGCCCGAGCA
GCCCGACGCGCTGACGGTGAACTTCTCTGAGTTGACCCCGCTCCTGGACATCATCATCAACCGCC
AGGCCACCATCAACATCGGAACCATTGGCCACGTCGCCCACGGTAAGTCGACGGTGGTGCGCGCC
ATCTCGGGGGTGCAGACCGTCCGGTTCAAGGACGAGTTGGAGCGT
Found at i:104103 original size:27 final size:26
Alignment explanation
Indices: 104070--104159 Score: 121
Period size: 27 Copynumber: 3.4 Consensus size: 26
104060 GTCCTAAAAC
104070 AATCATCCCATACACTCTA-ACTCGCCA
1 AATCATCCCAT--ACTCTACACTCGCCA
104097 AATCAT-CCATACTCTACACTCGCCA
1 AATCATCCCATACTCTACACTCGCCA
*
104122 AATCATCTCCATACTCCACACTCGCCA
1 AATCATC-CCATACTCTACACTCGCCA
*
104149 AATCATTCCAT
1 AATCATCCCAT
104160 GCACTACATT
Statistics
Matches: 58, Mismatches: 2, Indels: 7
0.87 0.03 0.10
Matches are distributed among these distances:
24 6 0.10
25 14 0.24
26 8 0.14
27 30 0.52
ACGTcount: A:0.32, C:0.40, G:0.03, T:0.24
Consensus pattern (26 bp):
AATCATCCCATACTCTACACTCGCCA
Left flanking sequence: Indices 103570 -- 104069
CGTGAATATGCCGACACCAGCCGTTGTGACGGATGTCACTTCTGCTGCATAACTGCCCGGTACCG
GCCCAGGATTGTCTAAGTAGCGTCTAATTAGCGCGGACCAGCTCCACTCCCGCGGCTCCCGCATG
CCCACGCCCCGTCGCTTCGCCATGCCCAAACCTTAACGCTCGCCGGTGGCGGAGTTGCTCGCGTG
TTCGCTACAGTTACCCCTTCGGTCTTTAGGCACCAGACGGTCTTGGCAACATAAGCTATTGGCTC
TGCGTGCAGCCACCGAGCGTCAAATTAAACTACAATAACTCGAGGCACATACAGCAATAGTCGGG
CTCGCATGCGCGTATATCCTTCCCTACACGGCAGTATGTGCTCGCGTCCCCATACATTAATCCTT
ATACGTTTATCCCTAAGCACTCCCTAATTCGCTCCCCATATAATTATTTCAGACACTCCCACTCG
CATCCCGTATAATTATCCATACGCTCTACACTCGCGTCCTAAAAC
Right flanking sequence: Indices 104160 -- 104659
GCACTACATTCGCGTCTCCAAACCATCTCGTACACTACTCTCGCGTCCCCTAACCATCTCCATAA
AACCATATCCTTCCCCACACTCTCTACACTCACATCCCCTAATCAACTTCATTCAATCATATCCT
CCCCACTCTCTACACTCGCAACCACTCGCATCCCTACATTCGCATCCTCATTCTTCCCTCCACCC
TTCCCTCCACTTGCATCCCTACTCGCATCCTCACTCGCATCCTCACTCATCCCTCCCCTCGCATC
CTTTACGCACCCTCCACATCCCGCGTTCGAACCGAGCCGACCCCAAAACAAAAACAACAATCACA
CCGCCACACCCACCAAACCCACCCCACAACACGCCCCGCACAACACGCCACCCACCACCCACCGC
GTCGTCGCGCGGCCCGTCGCAAACCCCGTCCACCAGCGCGCCCGAAAAACTCGCACGACGCGCGA
CGTGACAACACCTCCTCCATCGCTCCCCATGCTCATGCTTCGACT
Found at i:104121 original size:25 final size:26
Alignment explanation
Indices: 104083--104159 Score: 122
Period size: 27 Copynumber: 3.0 Consensus size: 26
104073 CATCCCATAC
104083 ACTCTA-ACTCGCCAAATCA-TCCAT
1 ACTCTACACTCGCCAAATCATTCCAT
104107 ACTCTACACTCGCCAAATCATCTCCAT
1 ACTCTACACTCGCCAAATCAT-TCCAT
*
104134 ACTCCACACTCGCCAAATCATTCCAT
1 ACTCTACACTCGCCAAATCATTCCAT
104160 GCACTACATT
Statistics
Matches: 49, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
24 6 0.12
25 13 0.27
26 5 0.10
27 25 0.51
ACGTcount: A:0.31, C:0.40, G:0.04, T:0.25
Consensus pattern (26 bp):
ACTCTACACTCGCCAAATCATTCCAT
Left flanking sequence: Indices 103583 -- 104082
ACACCAGCCGTTGTGACGGATGTCACTTCTGCTGCATAACTGCCCGGTACCGGCCCAGGATTGTC
TAAGTAGCGTCTAATTAGCGCGGACCAGCTCCACTCCCGCGGCTCCCGCATGCCCACGCCCCGTC
GCTTCGCCATGCCCAAACCTTAACGCTCGCCGGTGGCGGAGTTGCTCGCGTGTTCGCTACAGTTA
CCCCTTCGGTCTTTAGGCACCAGACGGTCTTGGCAACATAAGCTATTGGCTCTGCGTGCAGCCAC
CGAGCGTCAAATTAAACTACAATAACTCGAGGCACATACAGCAATAGTCGGGCTCGCATGCGCGT
ATATCCTTCCCTACACGGCAGTATGTGCTCGCGTCCCCATACATTAATCCTTATACGTTTATCCC
TAAGCACTCCCTAATTCGCTCCCCATATAATTATTTCAGACACTCCCACTCGCATCCCGTATAAT
TATCCATACGCTCTACACTCGCGTCCTAAAACAATCATCCCATAC
Right flanking sequence: Indices 104160 -- 104659
GCACTACATTCGCGTCTCCAAACCATCTCGTACACTACTCTCGCGTCCCCTAACCATCTCCATAA
AACCATATCCTTCCCCACACTCTCTACACTCACATCCCCTAATCAACTTCATTCAATCATATCCT
CCCCACTCTCTACACTCGCAACCACTCGCATCCCTACATTCGCATCCTCATTCTTCCCTCCACCC
TTCCCTCCACTTGCATCCCTACTCGCATCCTCACTCGCATCCTCACTCATCCCTCCCCTCGCATC
CTTTACGCACCCTCCACATCCCGCGTTCGAACCGAGCCGACCCCAAAACAAAAACAACAATCACA
CCGCCACACCCACCAAACCCACCCCACAACACGCCCCGCACAACACGCCACCCACCACCCACCGC
GTCGTCGCGCGGCCCGTCGCAAACCCCGTCCACCAGCGCGCCCGAAAAACTCGCACGACGCGCGA
CGTGACAACACCTCCTCCATCGCTCCCCATGCTCATGCTTCGACT
Found at i:104196 original size:31 final size:31
Alignment explanation
Indices: 104161--104219 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
104151 TCATTCCATG
*
104161 CACTACAT-TCGCGTCTCCAAACCATCTCGTA
1 CACTAC-TCTCGCGTCCCCAAACCATCTCGTA
*
104192 CACTACTCTCGCGTCCCCTAACCATCTC
1 CACTACTCTCGCGTCCCCAAACCATCTC
104220 CATAAAACCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 1 0.04
31 24 0.96
ACGTcount: A:0.22, C:0.44, G:0.08, T:0.25
Consensus pattern (31 bp):
CACTACTCTCGCGTCCCCAAACCATCTCGTA
Left flanking sequence: Indices 103661 -- 104160
ATTAGCGCGGACCAGCTCCACTCCCGCGGCTCCCGCATGCCCACGCCCCGTCGCTTCGCCATGCC
CAAACCTTAACGCTCGCCGGTGGCGGAGTTGCTCGCGTGTTCGCTACAGTTACCCCTTCGGTCTT
TAGGCACCAGACGGTCTTGGCAACATAAGCTATTGGCTCTGCGTGCAGCCACCGAGCGTCAAATT
AAACTACAATAACTCGAGGCACATACAGCAATAGTCGGGCTCGCATGCGCGTATATCCTTCCCTA
CACGGCAGTATGTGCTCGCGTCCCCATACATTAATCCTTATACGTTTATCCCTAAGCACTCCCTA
ATTCGCTCCCCATATAATTATTTCAGACACTCCCACTCGCATCCCGTATAATTATCCATACGCTC
TACACTCGCGTCCTAAAACAATCATCCCATACACTCTAACTCGCCAAATCATCCATACTCTACAC
TCGCCAAATCATCTCCATACTCCACACTCGCCAAATCATTCCATG
Right flanking sequence: Indices 104220 -- 104719
CATAAAACCATATCCTTCCCCACACTCTCTACACTCACATCCCCTAATCAACTTCATTCAATCAT
ATCCTCCCCACTCTCTACACTCGCAACCACTCGCATCCCTACATTCGCATCCTCATTCTTCCCTC
CACCCTTCCCTCCACTTGCATCCCTACTCGCATCCTCACTCGCATCCTCACTCATCCCTCCCCTC
GCATCCTTTACGCACCCTCCACATCCCGCGTTCGAACCGAGCCGACCCCAAAACAAAAACAACAA
TCACACCGCCACACCCACCAAACCCACCCCACAACACGCCCCGCACAACACGCCACCCACCACCC
ACCGCGTCGTCGCGCGGCCCGTCGCAAACCCCGTCCACCAGCGCGCCCGAAAAACTCGCACGACG
CGCGACGTGACAACACCTCCTCCATCGCTCCCCATGCTCATGCTTCGACTCCGGTTTCTCCGGTG
GCAGCTGACGGGGTTCACGCGTGTCACCACGCCGTACCTGGACAA
Done.