Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: C8031
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 76767
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Found at i:8702 original size:22 final size:23
Alignment explanation
Indices: 8674--8729 Score: 82
Period size: 22 Copynumber: 2.5 Consensus size: 23
8664 CATAATACAT
8674 AAACAAGGCACA-CAGACAAG-CA
1 AAACAAGGCACATCA-ACAAGCCA
8696 AAACAAGGCACATCAACAAGCCA
1 AAACAAGGCACATCAACAAGCCA
8719 AAAC-AGGCACA
1 AAACAAGGCACA
8730 ACTTTTACAC
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
22 24 0.75
23 8 0.25
ACGTcount: A:0.54, C:0.29, G:0.16, T:0.02
Consensus pattern (23 bp):
AAACAAGGCACATCAACAAGCCA
Left flanking sequence: Indices 8174 -- 8673
GCCCGACTCGGTGGCATTCTGCCGCGAGATCGCGGCCAAAAAGTACCCCGACGGGCCGTTTGCCT
TTGACCAGGTTGACTTGTTACAGCCCGACGCTCCCTTCCTCAGCCACAAGTTTGAGTTGTTAGTT
GACAAGGGGACGCTTGACGCGATTGCCCTTAACCAGGACCCGCTCGCCGACCACGGGGGCAAGAC
TGGCATGGAGGTGTACGCGTCCCAGGTGGCCAAGATGATGGGCTCGGACTCCAAGTTGGTGATTA
CAAGCTGCAACTTCACGGAGGACGAGCTCACGACGATTGTCACTCGCGACACGGGGTTGCGGGTG
TGGAAGAAGATTGCCTACCCCAGCTTCCGCTTTGGCGGGGCCCAGGGGTCTACGATCTGTAGCTT
GGTGTTTGAGCTCGCGTAGGGACGGGCTGTTTACGGTCAAGTACCATCAAACCAGGTTACCTCTG
AACACCAGCAAATAGACATTAACGATGAGAATAGCCATAATACAT
Right flanking sequence: Indices 8730 -- 9229
ACTTTTACACATATCATACATTTACTGGTAAATTGACAAATAATCATCACTTATCTATTCACTAC
CTCTAGCTAAGCGCAATGTTGCACCCGTCCATCAACGACATCGTCAAGTGGGTCTGCTTGCGCAT
GCGGCCGTCGTTGTGGTCCTCGATCTTACTGAACATCTGCAACAACCGCACCGTCACGTACGAGG
TCTCGGTCAACGCAAACTGCTGCCCGAGACAGATCCGCGGCCCGCCGTTGAACGGCAAGTACGCC
CACCCCAACCCGTTGGTCAGCGAGTCGAGCCAGCGCTCGGGGCGGAACTCAAGCAGGTCCTTGCC
GTAGTACTCGGGGTTGCGGTGCATCGAGTACACGTCGTAGTTGACCACCAGCCCCTTGGGCACAA
ACACCGGCTGGTCTCCGTTGGGGCCGCCGCCACGGGGAAGCGTGGTGTCCTTCATACAGAACCGG
GCGTTACGCGGCACCAGCGGGTACAACCGGAGGGTCTCGTTCATC
Found at i:12504 original size:14 final size:14
Alignment explanation
Indices: 12485--12514 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
12475 CTCATACAAC
12485 CCATACAACCCATA
1 CCATACAACCCATA
12499 CCATACAACCCATA
1 CCATACAACCCATA
12513 CC
1 CC
12515 CCATGCAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.40, C:0.47, G:0.00, T:0.13
Consensus pattern (14 bp):
CCATACAACCCATA
Left flanking sequence: Indices 11985 -- 12484
GCTCGATACCACCTCCCTTGGGTAGCCCGACCCCACTGCTCGCGCTTACGTAAGTGCGCCTGTTT
ACGAGGGTTCCGGTTCGGGAGTGGAGAGTCAGCAGCCAAGACAAGCCAAGACAGCCAAGGCCAGC
GAAGGTAGCAATCGCGGTCGGGTATCGGGCCAATCGGTGGTTGTTCTCCGAGCCCTCCAATTGTG
CCAATTGCGCCGGTTTGCTTTAATTCGCCAAGTACTCACCTCGACCTTCCATTACTTCTAATGGT
CTATCAATGGGCCCTCTCGGCATTTAACCCCTCATGTTGGGCTTCAATTGGGTCTCTCGGCCTCA
TACACACTCCTGTGGGGTCCTATAGGGCTCATACTCCTCCTATATCTCCTAACTCCCTTATCAAT
TAGTCAATTGGACTTACGCACGACAAGATTTGCAGCCGTCAGCCATACAGCCTACTACTCCATAT
GGACCCATATGACTCACAACACACAACTCATACGACTCATACAAC
Right flanking sequence: Indices 12515 -- 13014
CCATGCAACTACTCACAACCACCACCTACACATCTCCATTTCTTCTATCTTATAATACACACCTA
GCTCGTCTCCAGAAGCCGCACCACCGCGTCTCGCACCAGGGCGTCCTTGAATTTGAGCATGTACT
GGATGGGGTGCCCGTCAGACGACACCGAGTTGAACCGCACAAACTTGTCGGGGGTCAAACTCAGC
TCGTACCCCTTGATGAACTCGGTCTTGTCCAGCACCTTAACGTTCAAAATCACCTTGTGCACCCC
GATCAGCCGCATCACCAACCGCTTCAGCAGCTTGTCCTTGGTCTGGTTCAAATGCAACGGCCCCA
CCCCACGCTCGCGCCACCCGGCCTGCACGTTGGTGAAGTCGAGCTCGTAGAGCTTGCACTTGGTG
CTGTACAACAGCACCTCGTTCTCCTCGCCGGTGGCGGCCTCCACCGGCGCCAAGTCCACCTGCTT
GAATTGGGGCTTCGGCTGGCGCGAGTCGTCGTTGATCAGCTCGGT
Found at i:14188 original size:17 final size:17
Alignment explanation
Indices: 14166--14230 Score: 105
Period size: 17 Copynumber: 3.8 Consensus size: 17
14156 GCGGTGAGGC
14166 AGCTTCTATAGGTGAGT
1 AGCTTCTATAGGTGAGT
14183 AGCTTCTATAGGTGAGT
1 AGCTTCTATAGGTGAGT
14200 AGCTTCTCA-AGGTGAGT
1 AGCTTCT-ATAGGTGAGT
*
14217 AGCTTCTCTAGGTG
1 AGCTTCTATAGGTG
14231 GTGTAACACC
Statistics
Matches: 45, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
17 44 0.98
18 1 0.02
ACGTcount: A:0.22, C:0.15, G:0.29, T:0.34
Consensus pattern (17 bp):
AGCTTCTATAGGTGAGT
Left flanking sequence: Indices 13666 -- 14165
GTGCAAGTCCTCGAGCCGCCGCACCTTGCGGGCGTCGTCCTCGTGGCCCTCGTCCAATTGTCGTT
TCGATGAGTCCTCTCCCATGGCTCCGAGGTTCCTGATGGCCGTTCAATGCCGTAATCTTTGATCG
CCCGAGCCGCACGACAGGAGGAGGACGAGGACGGGGAATGGAGTACGCGGGTGGGACGGGCCGAC
GGGGTGGTGGACGCGGCTGTGTTTACTGTGGGTGGGCTGAGTTTGTTTTGTGTTTTGTAGTTTTC
TACGGTGGTGTGTACGTGTGGTGCGTTTATGTTTCGTGTCTTCGTACTATGTTGCTAGGGTTAGG
TAGCCATGTAACTGTGGCCATTTTGGGAGTGAATCGGGAGTGGAGAATGGGAGTGATTTTGGGAG
TGAGGATTCTTAGCCACGGCTAGAAAAATGATAGGAGCTGGGTCATGCAGAAACGTAATGGTTAA
GTAGGCGATCAAGGGGTGGTAAGTAGGTGAAGTATGCGGTGAGGC
Right flanking sequence: Indices 14231 -- 14730
GTGTAACACCTGGCAACCTACCTGGTGACGTAGGTGGTCAATAGGCGATGACGTAGTGCCAGGTG
GCGAACCCGTGAAACCGGTTATTAACCCTGCCCGATGCCTCGCGACCCGGTGGTGATTACACAGA
TCCTCAAATCCCACCAAACCCCTTCTCGTGTCCTAGTACTTCATCGCCAGGTACTTCGCGTACTT
GTCGCGCACCGACCGGTGGTCTGCCACCGGAGCAGGGGGCGGAGCGGGCCGGCGCGGAGCGGGCG
CGGGCCGGTGGTGGTCGCGTCCCGCAAACAGCCGCAGCAGGAAGCTCTGCCCGTCGCGTCCGTGG
TGGCGGCGGGTGGCGGCGGCCGACGCCGTGAGCCCCTGACGCGTGTAGTGGCGCCCCCCGTGGCC
TCCCCCGAGCCGCATCGGCTTCCAGTAGCGCGTGGTGTGGCCGCGCTCGATGTCCACAAGCGCCG
TCCGCGTGCCCATCCGGATGCCCACCCGCGCCAACGCCTCGACAC
Found at i:15327 original size:22 final size:26
Alignment explanation
Indices: 15302--15349 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15292 AGGGAGAGAA
15302 GGGAA-GGA-GGAGAT-T-GAAGGAG
1 GGGAAGGGAGGGAGATATGGAAGGAG
15324 GGGAAGGGAGGGAGATATGGAAGGAG
1 GGGAAGGGAGGGAGATATGGAAGGAG
15350 AGATAGAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 5 0.23
23 3 0.14
24 6 0.27
25 1 0.05
26 7 0.32
ACGTcount: A:0.35, C:0.00, G:0.56, T:0.08
Consensus pattern (26 bp):
GGGAAGGGAGGGAGATATGGAAGGAG
Left flanking sequence: Indices 14802 -- 15301
ACCACCCGCACCAGCTCAATGGCGCCGTAGGGCGCGAACGTCTTCAGCACGTCCAACTCGCTGAC
CGCGTAGTCGAGCCGCAGCACAAACACCGTGCGGTAGGGGTCTTTGACTTGTACTTCCAGCTCCG
GGGGTTTGAGCCACTCCGCCATCTGGCGCTGGTGGCTGTCGCGCTGGAGCTGTTTTTTCGCGAGG
GCCTTCTCGTGCTCGAGCTGGTGGTTGGTCTTGGCCACCGGGGGCCGTGGTTGGTTGTGGAGGGC
ATCGACGTGGGCCCGGTAGGCGTTTTTGAGGGAGGCGACGCCCGAGACGGCGCGGGTTCTGCGTT
TTTCCGGGGGGTAGTCGCCCGGCGGGATGTATAGTAGCGGGTGTTTGGGCTTGAAGAGCTCCTGG
ATCGTCCTCGGGTACTTCTCGCTGCTCATGGTGGTGTGCGCAGGTGCGCAGTGCGGCTGGAGATG
AAGGATGGGTGGGTGGAAGAAGACGAAAAAAGGGAAGGGAGAGAA
Right flanking sequence: Indices 15350 -- 15849
AGATAGAAGGAGAATGGAAGGAGAATGGGAGGAGAGAAGAAGATAGTGAACAGAGAAGAAATTGT
ATAGTGGTAGTGGTAGATGGTAGTTGGTAGTTGGCAGGTGGTGAGTGGTAGGTGTTAGGTGGGAA
GTATAGGTTAGAGATAAGTTTTAGGTGAGCCTTCAAACCACTGCTCAGTTGGTGTCAGAGAACAA
GAACGAAGAATCTACAAGAGCAGCCATTCCACACACCGCGCTCACACTACCGTTCGTCTCCACGT
TTTGTCACGCGCGCTTACCTCACTCGTCAGCACACACGGCATGAAGCCCAGCGACGAACTCGCGG
CAGCCAACGATGCCGTCGACTTGGCACTGCTCCCCACGTACACCCGCAACCAGTTGGCCCGCTTC
AACGGCGCCGACGGCTCCGACGTCTACGTGGGCATCCGCGGGGTGGTGTACGACGTCACCCCGAA
CCGCCAGAGCTACGGCCCGGGCAAGTCGTACCACTCGTTCGTGGG
Found at i:15328 original size:36 final size:37
Alignment explanation
Indices: 15288--15361 Score: 98
Period size: 38 Copynumber: 2.0 Consensus size: 37
15278 GACGAAAAAA
*
15288 GGGAAGGGA-GAGA-AGGGAAGGAGGAGATTGAAGGAG
1 GGGAAGGGAGGAGATAGGGAAGGA-GAGATAGAAGGAG
*
15324 GGGAAGGGAGGGAGATATGGAAGGAGAGATAGAAGGAG
1 GGGAAGGGA-GGAGATAGGGAAGGAGAGATAGAAGGAG
15362 AATGGAAGGA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
36 9 0.27
38 16 0.48
39 8 0.24
ACGTcount: A:0.39, C:0.00, G:0.54, T:0.07
Consensus pattern (37 bp):
GGGAAGGGAGGAGATAGGGAAGGAGAGATAGAAGGAG
Left flanking sequence: Indices 14788 -- 15287
TGTTGTGGTCACGCACCACCCGCACCAGCTCAATGGCGCCGTAGGGCGCGAACGTCTTCAGCACG
TCCAACTCGCTGACCGCGTAGTCGAGCCGCAGCACAAACACCGTGCGGTAGGGGTCTTTGACTTG
TACTTCCAGCTCCGGGGGTTTGAGCCACTCCGCCATCTGGCGCTGGTGGCTGTCGCGCTGGAGCT
GTTTTTTCGCGAGGGCCTTCTCGTGCTCGAGCTGGTGGTTGGTCTTGGCCACCGGGGGCCGTGGT
TGGTTGTGGAGGGCATCGACGTGGGCCCGGTAGGCGTTTTTGAGGGAGGCGACGCCCGAGACGGC
GCGGGTTCTGCGTTTTTCCGGGGGGTAGTCGCCCGGCGGGATGTATAGTAGCGGGTGTTTGGGCT
TGAAGAGCTCCTGGATCGTCCTCGGGTACTTCTCGCTGCTCATGGTGGTGTGCGCAGGTGCGCAG
TGCGGCTGGAGATGAAGGATGGGTGGGTGGAAGAAGACGAAAAAA
Right flanking sequence: Indices 15362 -- 15861
AATGGAAGGAGAATGGGAGGAGAGAAGAAGATAGTGAACAGAGAAGAAATTGTATAGTGGTAGTG
GTAGATGGTAGTTGGTAGTTGGCAGGTGGTGAGTGGTAGGTGTTAGGTGGGAAGTATAGGTTAGA
GATAAGTTTTAGGTGAGCCTTCAAACCACTGCTCAGTTGGTGTCAGAGAACAAGAACGAAGAATC
TACAAGAGCAGCCATTCCACACACCGCGCTCACACTACCGTTCGTCTCCACGTTTTGTCACGCGC
GCTTACCTCACTCGTCAGCACACACGGCATGAAGCCCAGCGACGAACTCGCGGCAGCCAACGATG
CCGTCGACTTGGCACTGCTCCCCACGTACACCCGCAACCAGTTGGCCCGCTTCAACGGCGCCGAC
GGCTCCGACGTCTACGTGGGCATCCGCGGGGTGGTGTACGACGTCACCCCGAACCGCCAGAGCTA
CGGCCCGGGCAAGTCGTACCACTCGTTCGTGGGCAAGGACCTGAC
Found at i:15371 original size:11 final size:12
Alignment explanation
Indices: 15334--15386 Score: 65
Period size: 11 Copynumber: 4.6 Consensus size: 12
15324 GGGAAGGGAG
*
15334 GGAGATATGGAA
1 GGAGAGATGGAA
*
15346 GGAGAGATAGAA
1 GGAGAGATGGAA
15358 GGAGA-ATGGAA
1 GGAGAGATGGAA
*
15369 GGAGA-ATGGGA
1 GGAGAGATGGAA
15380 GGAGAGA
1 GGAGAGA
15387 AGAAGATAGT
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
11 20 0.56
12 16 0.44
ACGTcount: A:0.43, C:0.00, G:0.47, T:0.09
Consensus pattern (12 bp):
GGAGAGATGGAA
Left flanking sequence: Indices 14834 -- 15333
CGCGAACGTCTTCAGCACGTCCAACTCGCTGACCGCGTAGTCGAGCCGCAGCACAAACACCGTGC
GGTAGGGGTCTTTGACTTGTACTTCCAGCTCCGGGGGTTTGAGCCACTCCGCCATCTGGCGCTGG
TGGCTGTCGCGCTGGAGCTGTTTTTTCGCGAGGGCCTTCTCGTGCTCGAGCTGGTGGTTGGTCTT
GGCCACCGGGGGCCGTGGTTGGTTGTGGAGGGCATCGACGTGGGCCCGGTAGGCGTTTTTGAGGG
AGGCGACGCCCGAGACGGCGCGGGTTCTGCGTTTTTCCGGGGGGTAGTCGCCCGGCGGGATGTAT
AGTAGCGGGTGTTTGGGCTTGAAGAGCTCCTGGATCGTCCTCGGGTACTTCTCGCTGCTCATGGT
GGTGTGCGCAGGTGCGCAGTGCGGCTGGAGATGAAGGATGGGTGGGTGGAAGAAGACGAAAAAAG
GGAAGGGAGAGAAGGGAAGGAGGAGATTGAAGGAGGGGAAGGGAG
Right flanking sequence: Indices 15387 -- 15886
AGAAGATAGTGAACAGAGAAGAAATTGTATAGTGGTAGTGGTAGATGGTAGTTGGTAGTTGGCAG
GTGGTGAGTGGTAGGTGTTAGGTGGGAAGTATAGGTTAGAGATAAGTTTTAGGTGAGCCTTCAAA
CCACTGCTCAGTTGGTGTCAGAGAACAAGAACGAAGAATCTACAAGAGCAGCCATTCCACACACC
GCGCTCACACTACCGTTCGTCTCCACGTTTTGTCACGCGCGCTTACCTCACTCGTCAGCACACAC
GGCATGAAGCCCAGCGACGAACTCGCGGCAGCCAACGATGCCGTCGACTTGGCACTGCTCCCCAC
GTACACCCGCAACCAGTTGGCCCGCTTCAACGGCGCCGACGGCTCCGACGTCTACGTGGGCATCC
GCGGGGTGGTGTACGACGTCACCCCGAACCGCCAGAGCTACGGCCCGGGCAAGTCGTACCACTCG
TTCGTGGGCAAGGACCTGACGCGGCTCCTCGGGCTCAACAAGATC
Found at i:15463 original size:21 final size:19
Alignment explanation
Indices: 15416--15465 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 19
15406 AGAAATTGTA
*
15416 TAGTGGTAGTGGTAGATGG
1 TAGTGGTAGTGGCAGATGG
*
15435 TAGTTGGTAGTTGGCAGGTGG
1 TAG-TGGTAG-TGGCAGATGG
15456 TGAGTGGTAG
1 T-AGTGGTAG
15466 GTGTTAGGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 3 0.12
20 6 0.23
21 15 0.58
22 2 0.08
ACGTcount: A:0.18, C:0.02, G:0.48, T:0.32
Consensus pattern (19 bp):
TAGTGGTAGTGGCAGATGG
Left flanking sequence: Indices 14916 -- 15415
TGTACTTCCAGCTCCGGGGGTTTGAGCCACTCCGCCATCTGGCGCTGGTGGCTGTCGCGCTGGAG
CTGTTTTTTCGCGAGGGCCTTCTCGTGCTCGAGCTGGTGGTTGGTCTTGGCCACCGGGGGCCGTG
GTTGGTTGTGGAGGGCATCGACGTGGGCCCGGTAGGCGTTTTTGAGGGAGGCGACGCCCGAGACG
GCGCGGGTTCTGCGTTTTTCCGGGGGGTAGTCGCCCGGCGGGATGTATAGTAGCGGGTGTTTGGG
CTTGAAGAGCTCCTGGATCGTCCTCGGGTACTTCTCGCTGCTCATGGTGGTGTGCGCAGGTGCGC
AGTGCGGCTGGAGATGAAGGATGGGTGGGTGGAAGAAGACGAAAAAAGGGAAGGGAGAGAAGGGA
AGGAGGAGATTGAAGGAGGGGAAGGGAGGGAGATATGGAAGGAGAGATAGAAGGAGAATGGAAGG
AGAATGGGAGGAGAGAAGAAGATAGTGAACAGAGAAGAAATTGTA
Right flanking sequence: Indices 15466 -- 15965
GTGTTAGGTGGGAAGTATAGGTTAGAGATAAGTTTTAGGTGAGCCTTCAAACCACTGCTCAGTTG
GTGTCAGAGAACAAGAACGAAGAATCTACAAGAGCAGCCATTCCACACACCGCGCTCACACTACC
GTTCGTCTCCACGTTTTGTCACGCGCGCTTACCTCACTCGTCAGCACACACGGCATGAAGCCCAG
CGACGAACTCGCGGCAGCCAACGATGCCGTCGACTTGGCACTGCTCCCCACGTACACCCGCAACC
AGTTGGCCCGCTTCAACGGCGCCGACGGCTCCGACGTCTACGTGGGCATCCGCGGGGTGGTGTAC
GACGTCACCCCGAACCGCCAGAGCTACGGCCCGGGCAAGTCGTACCACTCGTTCGTGGGCAAGGA
CCTGACGCGGCTCCTCGGGCTCAACAAGATCAACCTAAACAACAAGGACCCGCCGAAGCACGACG
CCACCGGGTTCAGCCTCGACCGCGAGCACTGCACCTGGTACACCG
Found at i:15467 original size:14 final size:14
Alignment explanation
Indices: 15419--15468 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
15409 AATTGTATAG
15419 TGGTA-GTGGTAGA
1 TGGTAGGTGGTAGA
* *
15432 TGGTAGTTGGTAGT
1 TGGTAGGTGGTAGA
*
15446 TGGCAGGTGGT-GA
1 TGGTAGGTGGTAGA
15459 GTGGTAGGTG
1 -TGGTAGGTG
15469 TTAGGTGGGA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
13 6 0.21
14 23 0.79
ACGTcount: A:0.16, C:0.02, G:0.50, T:0.32
Consensus pattern (14 bp):
TGGTAGGTGGTAGA
Left flanking sequence: Indices 14919 -- 15418
ACTTCCAGCTCCGGGGGTTTGAGCCACTCCGCCATCTGGCGCTGGTGGCTGTCGCGCTGGAGCTG
TTTTTTCGCGAGGGCCTTCTCGTGCTCGAGCTGGTGGTTGGTCTTGGCCACCGGGGGCCGTGGTT
GGTTGTGGAGGGCATCGACGTGGGCCCGGTAGGCGTTTTTGAGGGAGGCGACGCCCGAGACGGCG
CGGGTTCTGCGTTTTTCCGGGGGGTAGTCGCCCGGCGGGATGTATAGTAGCGGGTGTTTGGGCTT
GAAGAGCTCCTGGATCGTCCTCGGGTACTTCTCGCTGCTCATGGTGGTGTGCGCAGGTGCGCAGT
GCGGCTGGAGATGAAGGATGGGTGGGTGGAAGAAGACGAAAAAAGGGAAGGGAGAGAAGGGAAGG
AGGAGATTGAAGGAGGGGAAGGGAGGGAGATATGGAAGGAGAGATAGAAGGAGAATGGAAGGAGA
ATGGGAGGAGAGAAGAAGATAGTGAACAGAGAAGAAATTGTATAG
Right flanking sequence: Indices 15469 -- 15968
TTAGGTGGGAAGTATAGGTTAGAGATAAGTTTTAGGTGAGCCTTCAAACCACTGCTCAGTTGGTG
TCAGAGAACAAGAACGAAGAATCTACAAGAGCAGCCATTCCACACACCGCGCTCACACTACCGTT
CGTCTCCACGTTTTGTCACGCGCGCTTACCTCACTCGTCAGCACACACGGCATGAAGCCCAGCGA
CGAACTCGCGGCAGCCAACGATGCCGTCGACTTGGCACTGCTCCCCACGTACACCCGCAACCAGT
TGGCCCGCTTCAACGGCGCCGACGGCTCCGACGTCTACGTGGGCATCCGCGGGGTGGTGTACGAC
GTCACCCCGAACCGCCAGAGCTACGGCCCGGGCAAGTCGTACCACTCGTTCGTGGGCAAGGACCT
GACGCGGCTCCTCGGGCTCAACAAGATCAACCTAAACAACAAGGACCCGCCGAAGCACGACGCCA
CCGGGTTCAGCCTCGACCGCGAGCACTGCACCTGGTACACCGGCG
Found at i:16397 original size:12 final size:12
Alignment explanation
Indices: 16371--16403 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
16361 AGGCTTGGCC
16371 CACCCA-CACCA
1 CACCCACCACCA
*
16382 CACCCACCACCG
1 CACCCACCACCA
16394 CACCCACCAC
1 CACCCACCAC
16404 ACGCGCGCGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 6 0.30
12 14 0.70
ACGTcount: A:0.30, C:0.67, G:0.03, T:0.00
Consensus pattern (12 bp):
CACCCACCACCA
Left flanking sequence: Indices 15871 -- 16370
CGGGCTCAACAAGATCAACCTAAACAACAAGGACCCGCCGAAGCACGACGCCACCGGGTTCAGCC
TCGACCGCGAGCACTGCACCTGGTACACCGGCGACTTTGGCGACAAGGAGCACGCCGCCGTCGAC
AAGTGGACCCAGTTCTTCAACAAGCGCTACCACATCGTGGCCACCATTGTCGACCACGAGCTCTA
GCCCGCGTCACCGCCGCCTCCGCCCCTTAATAGACAATACACACCCGCAGTCTCTGCAGTCACAA
TCTGACGGGGCCCCTACCCCCTCGTAAACCGTCGCCTAACCTGTCACCCTGTCACCTCCGCTGTC
ACCCTGTCACCGCTACACATGCTCGCTACACCCACCGCCGGCCCGCGCGTCCACCCGCGTCTCCC
CTGAAATTCCACGGCTGTCCATCTCGAGTGCGTGCTTGCGCGCCCCTGAAATACCGTGGAATTGT
CGGTCGGCAAGTAATTAACAGCCTATTTATAGACGAGGCTTGGCC
Right flanking sequence: Indices 16404 -- 16903
ACGCGCGCGACGGGCCCCCGTAGACCACTCTCCCCAAACGCTACTCCTTCCCCAACAAGCCCAAC
AATGCCAGCCCCACGTTCGTCGCGTCCACTGGTTGCTGCGACCGCGTACGATATTTTTTCGCGAC
CGGGCTGAGCCAGCCAGCCGGTGGAGGCCCGGCCCAGGGGACCCGGACCCGTCCCAGCACTCGTA
GCCCCCCTCGTAACCCCGCTGCCCGCGCGCAGCACCGCTTCTGCCGCCCAACGCCGCTGCCCGGT
GCGTGCCCGTCAGTGGACGCAGCAGTGGTGCACGAAAAAAACTGGTTCGTTCGGTTGATCTTATC
GTTGGACACCTCGAAACTACACCATGGACGCGGCGATGGCACAAACCCGGCAGGGTAAGATGCGT
CCCCAACACTACGGGTCCAGCGGGCTCACCGCCCCGCCGCCTGCGCCCAGCGAGTCCCGCAAGGG
GTCGATGACGTCGCAGCTGGGACTCAACAGGTTCTTCCGGCGAGG
Found at i:17574 original size:30 final size:31
Alignment explanation
Indices: 17540--17630 Score: 98
Period size: 30 Copynumber: 3.0 Consensus size: 31
17530 TGGGCCAAGG
*
17540 AATGGGGCCCAAT-GGCCAGATGGGTGGTCA
1 AATGGGGCCAAATGGGCCAGATGGGTGGTCA
* * *
17570 AAT-GGGTCAAATGGGTCATATGGGTGGTCA
1 AATGGGGCCAAATGGGCCAGATGGGTGGTCA
* * *
17600 AAT-GGGTCAAATGGGTCATATGGGTGGTCA
1 AATGGGGCCAAATGGGCCAGATGGGTGGTCA
17630 A
1 A
17631 GGTCAAATGG
Statistics
Matches: 56, Mismatches: 4, Indels: 2
0.90 0.06 0.03
Matches are distributed among these distances:
29 7 0.12
30 49 0.88
ACGTcount: A:0.26, C:0.13, G:0.37, T:0.23
Consensus pattern (31 bp):
AATGGGGCCAAATGGGCCAGATGGGTGGTCA
Left flanking sequence: Indices 17040 -- 17539
CGGATGATGGAGGACCTGACCCCGATCATCCCCACCATCGGCGGGCTGCTGTTGACGCCGCTGCT
TGGCGGAGCCCTGGCCCAGAAGATGAGCAACACCCAGTACCGCAAGCAGATGAACTCGCAGATGA
AGATGGCCTACGCCAACGGGGCCCGGGCCAACAGTATGGCCACGGGGATGGGTGTGGGCGGCATG
GGCGGCGACCCACGCACCATGAGCTTCAACTCGTACGGCGATCCGCGCACGATGTCGATGATGTC
TGGTCCGCGAGGCCCCGCCGGCCCGAGACAGGGCCCGCGGACGATGTCGTTGATGAACAACAACC
GGGCGCAGCCGTACGCGCGGGCCAACCTGATGCAGGGGCCCGGGGGTCCGCGGACGATGTCGATG
AACGGGCCCAACCGGTTTGGCCCGATGGCTCCGCCGATGGCCCCTGCGATGGGGGGCCTGAGAAA
CAATCTGTTGGGGAAGAACGGGTATGGTCCAGGGATGGGCCAAGG
Right flanking sequence: Indices 17631 -- 18130
GGTCAAATGGGTGGTCAGGGTCAAATGAACCAAATGGGTCAAATGAACCAAATGGGCCAAATGAA
CCAAATGGGACCTAACGGACAAATGGGCCCTAACGGACAAATGGGCCAAATGAACCAAATGGGAC
CCAACGGACAAATGAACGGGCCCGGCTACGGCCAGTACCAGAACCAGAACCAGTTCAACCAGCCC
TTCCAGAACCAGCCCTACAACCAACCCCAACAGTACCAGCAGTACCAAGGCCAGCCGGGCCAGGG
GTTCCAGCCGGGCCCCAGCCCCGTGATGGAGCTGCCCAACCAGGCCCAGGGCCAATTCTCGCATA
GCCTGCCCCAGCTCGCCCAGGGCGGGTTCCAAAACCCGCCTCCGTTGGCATCGCACCCGTCAAAG
CAGCTGGTGGACCTGTTGCACCAGGTGATCGAGGAGGAAGACGAGCCACCGGAGCAGCCGCGCTA
CCCAGACTTGAACGAAGAACTGCCGCTGGCGTCGTCCGCCCTGCT
Found at i:17579 original size:9 final size:9
Alignment explanation
Indices: 17565--17624 Score: 75
Period size: 9 Copynumber: 6.3 Consensus size: 9
17555 CCAGATGGGT
17565 GGTCAAATG
1 GGTCAAATG
17574 GGTCAAATG
1 GGTCAAATG
*
17583 GGTCATATGGG
1 GGTCAAAT--G
17594 TGGTCAAATG
1 -GGTCAAATG
17604 GGTCAAATG
1 GGTCAAATG
*
17613 GGTCATATG
1 GGTCAAATG
17622 GGT
1 GGT
17625 GGTCAAGGTC
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
9 36 0.80
10 1 0.02
11 1 0.02
12 7 0.16
ACGTcount: A:0.27, C:0.10, G:0.37, T:0.27
Consensus pattern (9 bp):
GGTCAAATG
Left flanking sequence: Indices 17065 -- 17564
TCATCCCCACCATCGGCGGGCTGCTGTTGACGCCGCTGCTTGGCGGAGCCCTGGCCCAGAAGATG
AGCAACACCCAGTACCGCAAGCAGATGAACTCGCAGATGAAGATGGCCTACGCCAACGGGGCCCG
GGCCAACAGTATGGCCACGGGGATGGGTGTGGGCGGCATGGGCGGCGACCCACGCACCATGAGCT
TCAACTCGTACGGCGATCCGCGCACGATGTCGATGATGTCTGGTCCGCGAGGCCCCGCCGGCCCG
AGACAGGGCCCGCGGACGATGTCGTTGATGAACAACAACCGGGCGCAGCCGTACGCGCGGGCCAA
CCTGATGCAGGGGCCCGGGGGTCCGCGGACGATGTCGATGAACGGGCCCAACCGGTTTGGCCCGA
TGGCTCCGCCGATGGCCCCTGCGATGGGGGGCCTGAGAAACAATCTGTTGGGGAAGAACGGGTAT
GGTCCAGGGATGGGCCAAGGAATGGGGCCCAATGGCCAGATGGGT
Right flanking sequence: Indices 17625 -- 18124
GGTCAAGGTCAAATGGGTGGTCAGGGTCAAATGAACCAAATGGGTCAAATGAACCAAATGGGCCA
AATGAACCAAATGGGACCTAACGGACAAATGGGCCCTAACGGACAAATGGGCCAAATGAACCAAA
TGGGACCCAACGGACAAATGAACGGGCCCGGCTACGGCCAGTACCAGAACCAGAACCAGTTCAAC
CAGCCCTTCCAGAACCAGCCCTACAACCAACCCCAACAGTACCAGCAGTACCAAGGCCAGCCGGG
CCAGGGGTTCCAGCCGGGCCCCAGCCCCGTGATGGAGCTGCCCAACCAGGCCCAGGGCCAATTCT
CGCATAGCCTGCCCCAGCTCGCCCAGGGCGGGTTCCAAAACCCGCCTCCGTTGGCATCGCACCCG
TCAAAGCAGCTGGTGGACCTGTTGCACCAGGTGATCGAGGAGGAAGACGAGCCACCGGAGCAGCC
GCGCTACCCAGACTTGAACGAAGAACTGCCGCTGGCGTCGTCCGC
Found at i:17634 original size:18 final size:18
Alignment explanation
Indices: 17613--17657 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
17603 GGGTCAAATG
*
17613 GGTCATATGGGTGGTCAA
1 GGTCAAATGGGTGGTCAA
*
17631 GGTCAAATGGGTGGTCAG
1 GGTCAAATGGGTGGTCAA
17649 GGTCAAATG
1 GGTCAAATG
17658 AACCAAATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.24, C:0.11, G:0.40, T:0.24
Consensus pattern (18 bp):
GGTCAAATGGGTGGTCAA
Left flanking sequence: Indices 17113 -- 17612
CCCTGGCCCAGAAGATGAGCAACACCCAGTACCGCAAGCAGATGAACTCGCAGATGAAGATGGCC
TACGCCAACGGGGCCCGGGCCAACAGTATGGCCACGGGGATGGGTGTGGGCGGCATGGGCGGCGA
CCCACGCACCATGAGCTTCAACTCGTACGGCGATCCGCGCACGATGTCGATGATGTCTGGTCCGC
GAGGCCCCGCCGGCCCGAGACAGGGCCCGCGGACGATGTCGTTGATGAACAACAACCGGGCGCAG
CCGTACGCGCGGGCCAACCTGATGCAGGGGCCCGGGGGTCCGCGGACGATGTCGATGAACGGGCC
CAACCGGTTTGGCCCGATGGCTCCGCCGATGGCCCCTGCGATGGGGGGCCTGAGAAACAATCTGT
TGGGGAAGAACGGGTATGGTCCAGGGATGGGCCAAGGAATGGGGCCCAATGGCCAGATGGGTGGT
CAAATGGGTCAAATGGGTCATATGGGTGGTCAAATGGGTCAAATG
Right flanking sequence: Indices 17658 -- 18157
AACCAAATGGGTCAAATGAACCAAATGGGCCAAATGAACCAAATGGGACCTAACGGACAAATGGG
CCCTAACGGACAAATGGGCCAAATGAACCAAATGGGACCCAACGGACAAATGAACGGGCCCGGCT
ACGGCCAGTACCAGAACCAGAACCAGTTCAACCAGCCCTTCCAGAACCAGCCCTACAACCAACCC
CAACAGTACCAGCAGTACCAAGGCCAGCCGGGCCAGGGGTTCCAGCCGGGCCCCAGCCCCGTGAT
GGAGCTGCCCAACCAGGCCCAGGGCCAATTCTCGCATAGCCTGCCCCAGCTCGCCCAGGGCGGGT
TCCAAAACCCGCCTCCGTTGGCATCGCACCCGTCAAAGCAGCTGGTGGACCTGTTGCACCAGGTG
ATCGAGGAGGAAGACGAGCCACCGGAGCAGCCGCGCTACCCAGACTTGAACGAAGAACTGCCGCT
GGCGTCGTCCGCCCTGCTCAACAAGGAGTTGCCGCTGCTCCCGCC
Found at i:17647 original size:30 final size:29
Alignment explanation
Indices: 17559--17642 Score: 136
Period size: 30 Copynumber: 2.9 Consensus size: 29
17549 CAATGGCCAG
17559 ATGGGTGGTCAAATGGGTCAAATGGGTCAT
1 ATGGGTGGTCAAA-GGGTCAAATGGGTCAT
17589 ATGGGTGGTCAAATGGGTCAAATGGGTCAT
1 ATGGGTGGTCAAA-GGGTCAAATGGGTCAT
17619 ATGGGTGGTC-AA-GGTCAAATGGGT
1 ATGGGTGGTCAAAGGGTCAAATGGGT
17643 GGTCAGGGTC
Statistics
Matches: 54, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
27 12 0.22
29 2 0.04
30 40 0.74
ACGTcount: A:0.26, C:0.10, G:0.38, T:0.26
Consensus pattern (29 bp):
ATGGGTGGTCAAAGGGTCAAATGGGTCAT
Left flanking sequence: Indices 17059 -- 17558
CCCCGATCATCCCCACCATCGGCGGGCTGCTGTTGACGCCGCTGCTTGGCGGAGCCCTGGCCCAG
AAGATGAGCAACACCCAGTACCGCAAGCAGATGAACTCGCAGATGAAGATGGCCTACGCCAACGG
GGCCCGGGCCAACAGTATGGCCACGGGGATGGGTGTGGGCGGCATGGGCGGCGACCCACGCACCA
TGAGCTTCAACTCGTACGGCGATCCGCGCACGATGTCGATGATGTCTGGTCCGCGAGGCCCCGCC
GGCCCGAGACAGGGCCCGCGGACGATGTCGTTGATGAACAACAACCGGGCGCAGCCGTACGCGCG
GGCCAACCTGATGCAGGGGCCCGGGGGTCCGCGGACGATGTCGATGAACGGGCCCAACCGGTTTG
GCCCGATGGCTCCGCCGATGGCCCCTGCGATGGGGGGCCTGAGAAACAATCTGTTGGGGAAGAAC
GGGTATGGTCCAGGGATGGGCCAAGGAATGGGGCCCAATGGCCAG
Right flanking sequence: Indices 17643 -- 18142
GGTCAGGGTCAAATGAACCAAATGGGTCAAATGAACCAAATGGGCCAAATGAACCAAATGGGACC
TAACGGACAAATGGGCCCTAACGGACAAATGGGCCAAATGAACCAAATGGGACCCAACGGACAAA
TGAACGGGCCCGGCTACGGCCAGTACCAGAACCAGAACCAGTTCAACCAGCCCTTCCAGAACCAG
CCCTACAACCAACCCCAACAGTACCAGCAGTACCAAGGCCAGCCGGGCCAGGGGTTCCAGCCGGG
CCCCAGCCCCGTGATGGAGCTGCCCAACCAGGCCCAGGGCCAATTCTCGCATAGCCTGCCCCAGC
TCGCCCAGGGCGGGTTCCAAAACCCGCCTCCGTTGGCATCGCACCCGTCAAAGCAGCTGGTGGAC
CTGTTGCACCAGGTGATCGAGGAGGAAGACGAGCCACCGGAGCAGCCGCGCTACCCAGACTTGAA
CGAAGAACTGCCGCTGGCGTCGTCCGCCCTGCTCAACAAGGAGTT
Found at i:17664 original size:9 final size:9
Alignment explanation
Indices: 17652--17702 Score: 57
Period size: 9 Copynumber: 5.7 Consensus size: 9
17642 TGGTCAGGGT
17652 CAAATGAAC
1 CAAATGAAC
***
17661 CAAATGGGT
1 CAAATGAAC
17670 CAAATGAAC
1 CAAATGAAC
**
17679 CAAATGGGC
1 CAAATGAAC
17688 CAAATGAAC
1 CAAATGAAC
17697 CAAATG
1 CAAATG
17703 GGACCTAACG
Statistics
Matches: 32, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
9 32 1.00
ACGTcount: A:0.47, C:0.20, G:0.20, T:0.14
Consensus pattern (9 bp):
CAAATGAAC
Left flanking sequence: Indices 17152 -- 17651
AGATGAACTCGCAGATGAAGATGGCCTACGCCAACGGGGCCCGGGCCAACAGTATGGCCACGGGG
ATGGGTGTGGGCGGCATGGGCGGCGACCCACGCACCATGAGCTTCAACTCGTACGGCGATCCGCG
CACGATGTCGATGATGTCTGGTCCGCGAGGCCCCGCCGGCCCGAGACAGGGCCCGCGGACGATGT
CGTTGATGAACAACAACCGGGCGCAGCCGTACGCGCGGGCCAACCTGATGCAGGGGCCCGGGGGT
CCGCGGACGATGTCGATGAACGGGCCCAACCGGTTTGGCCCGATGGCTCCGCCGATGGCCCCTGC
GATGGGGGGCCTGAGAAACAATCTGTTGGGGAAGAACGGGTATGGTCCAGGGATGGGCCAAGGAA
TGGGGCCCAATGGCCAGATGGGTGGTCAAATGGGTCAAATGGGTCATATGGGTGGTCAAATGGGT
CAAATGGGTCATATGGGTGGTCAAGGTCAAATGGGTGGTCAGGGT
Right flanking sequence: Indices 17703 -- 18202
GGACCTAACGGACAAATGGGCCCTAACGGACAAATGGGCCAAATGAACCAAATGGGACCCAACGG
ACAAATGAACGGGCCCGGCTACGGCCAGTACCAGAACCAGAACCAGTTCAACCAGCCCTTCCAGA
ACCAGCCCTACAACCAACCCCAACAGTACCAGCAGTACCAAGGCCAGCCGGGCCAGGGGTTCCAG
CCGGGCCCCAGCCCCGTGATGGAGCTGCCCAACCAGGCCCAGGGCCAATTCTCGCATAGCCTGCC
CCAGCTCGCCCAGGGCGGGTTCCAAAACCCGCCTCCGTTGGCATCGCACCCGTCAAAGCAGCTGG
TGGACCTGTTGCACCAGGTGATCGAGGAGGAAGACGAGCCACCGGAGCAGCCGCGCTACCCAGAC
TTGAACGAAGAACTGCCGCTGGCGTCGTCCGCCCTGCTCAACAAGGAGTTGCCGCTGCTCCCGCC
CGCAAAACTGATGCTGATGAAGCTGACGCTGACCCTGGGCCTGAA
Found at i:17669 original size:18 final size:18
Alignment explanation
Indices: 17648--17704 Score: 105
Period size: 18 Copynumber: 3.2 Consensus size: 18
17638 TGGGTGGTCA
17648 GGGTCAAATGAACCAAAT
1 GGGTCAAATGAACCAAAT
17666 GGGTCAAATGAACCAAAT
1 GGGTCAAATGAACCAAAT
*
17684 GGGCCAAATGAACCAAAT
1 GGGTCAAATGAACCAAAT
17702 GGG
1 GGG
17705 ACCTAACGGA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.42, C:0.18, G:0.26, T:0.14
Consensus pattern (18 bp):
GGGTCAAATGAACCAAAT
Left flanking sequence: Indices 17148 -- 17647
AAGCAGATGAACTCGCAGATGAAGATGGCCTACGCCAACGGGGCCCGGGCCAACAGTATGGCCAC
GGGGATGGGTGTGGGCGGCATGGGCGGCGACCCACGCACCATGAGCTTCAACTCGTACGGCGATC
CGCGCACGATGTCGATGATGTCTGGTCCGCGAGGCCCCGCCGGCCCGAGACAGGGCCCGCGGACG
ATGTCGTTGATGAACAACAACCGGGCGCAGCCGTACGCGCGGGCCAACCTGATGCAGGGGCCCGG
GGGTCCGCGGACGATGTCGATGAACGGGCCCAACCGGTTTGGCCCGATGGCTCCGCCGATGGCCC
CTGCGATGGGGGGCCTGAGAAACAATCTGTTGGGGAAGAACGGGTATGGTCCAGGGATGGGCCAA
GGAATGGGGCCCAATGGCCAGATGGGTGGTCAAATGGGTCAAATGGGTCATATGGGTGGTCAAAT
GGGTCAAATGGGTCATATGGGTGGTCAAGGTCAAATGGGTGGTCA
Right flanking sequence: Indices 17705 -- 18204
ACCTAACGGACAAATGGGCCCTAACGGACAAATGGGCCAAATGAACCAAATGGGACCCAACGGAC
AAATGAACGGGCCCGGCTACGGCCAGTACCAGAACCAGAACCAGTTCAACCAGCCCTTCCAGAAC
CAGCCCTACAACCAACCCCAACAGTACCAGCAGTACCAAGGCCAGCCGGGCCAGGGGTTCCAGCC
GGGCCCCAGCCCCGTGATGGAGCTGCCCAACCAGGCCCAGGGCCAATTCTCGCATAGCCTGCCCC
AGCTCGCCCAGGGCGGGTTCCAAAACCCGCCTCCGTTGGCATCGCACCCGTCAAAGCAGCTGGTG
GACCTGTTGCACCAGGTGATCGAGGAGGAAGACGAGCCACCGGAGCAGCCGCGCTACCCAGACTT
GAACGAAGAACTGCCGCTGGCGTCGTCCGCCCTGCTCAACAAGGAGTTGCCGCTGCTCCCGCCCG
CAAAACTGATGCTGATGAAGCTGACGCTGACCCTGGGCCTGAAGG
Found at i:17692 original size:36 final size:37
Alignment explanation
Indices: 17652--17764 Score: 124
Period size: 36 Copynumber: 3.1 Consensus size: 37
17642 TGGTCAGGGT
*
17652 CAAATGAACCAAATGGGTCAAATGAACCAAATGGG-C
1 CAAATGAACCAAATGGGCCAAATGAACCAAATGGGCC
* * *
17688 CAAATGAACCAAATGGGACCTAACGGA-CAAATGGGCC
1 CAAATGAACCAAATGGG-CCAAATGAACCAAATGGGCC
* * *
17725 CTAACGGA-CAAATGGGCCAAATGAACCAAATGGGACC
1 CAAATGAACCAAATGGGCCAAATGAACCAAATGGG-CC
17762 CAA
1 CAA
17765 CGGACAAATG
Statistics
Matches: 62, Mismatches: 11, Indels: 7
0.77 0.14 0.09
Matches are distributed among these distances:
35 6 0.10
36 41 0.66
37 15 0.24
ACGTcount: A:0.42, C:0.23, G:0.23, T:0.12
Consensus pattern (37 bp):
CAAATGAACCAAATGGGCCAAATGAACCAAATGGGCC
Left flanking sequence: Indices 17152 -- 17651
AGATGAACTCGCAGATGAAGATGGCCTACGCCAACGGGGCCCGGGCCAACAGTATGGCCACGGGG
ATGGGTGTGGGCGGCATGGGCGGCGACCCACGCACCATGAGCTTCAACTCGTACGGCGATCCGCG
CACGATGTCGATGATGTCTGGTCCGCGAGGCCCCGCCGGCCCGAGACAGGGCCCGCGGACGATGT
CGTTGATGAACAACAACCGGGCGCAGCCGTACGCGCGGGCCAACCTGATGCAGGGGCCCGGGGGT
CCGCGGACGATGTCGATGAACGGGCCCAACCGGTTTGGCCCGATGGCTCCGCCGATGGCCCCTGC
GATGGGGGGCCTGAGAAACAATCTGTTGGGGAAGAACGGGTATGGTCCAGGGATGGGCCAAGGAA
TGGGGCCCAATGGCCAGATGGGTGGTCAAATGGGTCAAATGGGTCATATGGGTGGTCAAATGGGT
CAAATGGGTCATATGGGTGGTCAAGGTCAAATGGGTGGTCAGGGT
Right flanking sequence: Indices 17765 -- 18264
CGGACAAATGAACGGGCCCGGCTACGGCCAGTACCAGAACCAGAACCAGTTCAACCAGCCCTTCC
AGAACCAGCCCTACAACCAACCCCAACAGTACCAGCAGTACCAAGGCCAGCCGGGCCAGGGGTTC
CAGCCGGGCCCCAGCCCCGTGATGGAGCTGCCCAACCAGGCCCAGGGCCAATTCTCGCATAGCCT
GCCCCAGCTCGCCCAGGGCGGGTTCCAAAACCCGCCTCCGTTGGCATCGCACCCGTCAAAGCAGC
TGGTGGACCTGTTGCACCAGGTGATCGAGGAGGAAGACGAGCCACCGGAGCAGCCGCGCTACCCA
GACTTGAACGAAGAACTGCCGCTGGCGTCGTCCGCCCTGCTCAACAAGGAGTTGCCGCTGCTCCC
GCCCGCAAAACTGATGCTGATGAAGCTGACGCTGACCCTGGGCCTGAAGGGCCGCAAGGCCCCGC
CCGACCTCGACGACGAGTTGTCGCGCCAGGACCTGTTCCAGCTGT
Found at i:17718 original size:18 final size:18
Alignment explanation
Indices: 17697--17774 Score: 95
Period size: 18 Copynumber: 4.3 Consensus size: 18
17687 CCAAATGAAC
17697 CAAATGGGACCTAACGGA
1 CAAATGGGACCTAACGGA
*
17715 CAAATGGGCCCTAACGGA
1 CAAATGGGACCTAACGGA
* * *
17733 CAAATGGG-CCAAATGAA
1 CAAATGGGACCTAACGGA
*
17750 CCAAATGGGACCCAACGGA
1 -CAAATGGGACCTAACGGA
17769 CAAATG
1 CAAATG
17775 AACGGGCCCG
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
17 6 0.12
18 39 0.76
19 6 0.12
ACGTcount: A:0.40, C:0.24, G:0.26, T:0.10
Consensus pattern (18 bp):
CAAATGGGACCTAACGGA
Left flanking sequence: Indices 17197 -- 17696
CCAACAGTATGGCCACGGGGATGGGTGTGGGCGGCATGGGCGGCGACCCACGCACCATGAGCTTC
AACTCGTACGGCGATCCGCGCACGATGTCGATGATGTCTGGTCCGCGAGGCCCCGCCGGCCCGAG
ACAGGGCCCGCGGACGATGTCGTTGATGAACAACAACCGGGCGCAGCCGTACGCGCGGGCCAACC
TGATGCAGGGGCCCGGGGGTCCGCGGACGATGTCGATGAACGGGCCCAACCGGTTTGGCCCGATG
GCTCCGCCGATGGCCCCTGCGATGGGGGGCCTGAGAAACAATCTGTTGGGGAAGAACGGGTATGG
TCCAGGGATGGGCCAAGGAATGGGGCCCAATGGCCAGATGGGTGGTCAAATGGGTCAAATGGGTC
ATATGGGTGGTCAAATGGGTCAAATGGGTCATATGGGTGGTCAAGGTCAAATGGGTGGTCAGGGT
CAAATGAACCAAATGGGTCAAATGAACCAAATGGGCCAAATGAAC
Right flanking sequence: Indices 17775 -- 18274
AACGGGCCCGGCTACGGCCAGTACCAGAACCAGAACCAGTTCAACCAGCCCTTCCAGAACCAGCC
CTACAACCAACCCCAACAGTACCAGCAGTACCAAGGCCAGCCGGGCCAGGGGTTCCAGCCGGGCC
CCAGCCCCGTGATGGAGCTGCCCAACCAGGCCCAGGGCCAATTCTCGCATAGCCTGCCCCAGCTC
GCCCAGGGCGGGTTCCAAAACCCGCCTCCGTTGGCATCGCACCCGTCAAAGCAGCTGGTGGACCT
GTTGCACCAGGTGATCGAGGAGGAAGACGAGCCACCGGAGCAGCCGCGCTACCCAGACTTGAACG
AAGAACTGCCGCTGGCGTCGTCCGCCCTGCTCAACAAGGAGTTGCCGCTGCTCCCGCCCGCAAAA
CTGATGCTGATGAAGCTGACGCTGACCCTGGGCCTGAAGGGCCGCAAGGCCCCGCCCGACCTCGA
CGACGAGTTGTCGCGCCAGGACCTGTTCCAGCTGTCGCTGAGCAA
Found at i:17718 original size:27 final size:27
Alignment explanation
Indices: 17688--17777 Score: 76
Period size: 27 Copynumber: 3.3 Consensus size: 27
17678 CCAAATGGGC
*
17688 CAAATGAACCAAATGGGACCTAACGGA
1 CAAATGAACCAAATGGGACCAAACGGA
** * * * *
17715 CAAATGGGCCCTAA-CGGA-CAAATGGGC
1 CAAAT-GAACCAAATGGGACCAAA-CGGA
*
17742 CAAATGAACCAAATGGGACCCAACGGA
1 CAAATGAACCAAATGGGACCAAACGGA
17769 CAAATGAAC
1 CAAATGAAC
17778 GGGCCCGGCT
Statistics
Matches: 45, Mismatches: 14, Indels: 8
0.67 0.21 0.12
Matches are distributed among these distances:
26 8 0.18
27 29 0.64
28 8 0.18
ACGTcount: A:0.42, C:0.24, G:0.23, T:0.10
Consensus pattern (27 bp):
CAAATGAACCAAATGGGACCAAACGGA
Left flanking sequence: Indices 17188 -- 17687
GGGCCCGGGCCAACAGTATGGCCACGGGGATGGGTGTGGGCGGCATGGGCGGCGACCCACGCACC
ATGAGCTTCAACTCGTACGGCGATCCGCGCACGATGTCGATGATGTCTGGTCCGCGAGGCCCCGC
CGGCCCGAGACAGGGCCCGCGGACGATGTCGTTGATGAACAACAACCGGGCGCAGCCGTACGCGC
GGGCCAACCTGATGCAGGGGCCCGGGGGTCCGCGGACGATGTCGATGAACGGGCCCAACCGGTTT
GGCCCGATGGCTCCGCCGATGGCCCCTGCGATGGGGGGCCTGAGAAACAATCTGTTGGGGAAGAA
CGGGTATGGTCCAGGGATGGGCCAAGGAATGGGGCCCAATGGCCAGATGGGTGGTCAAATGGGTC
AAATGGGTCATATGGGTGGTCAAATGGGTCAAATGGGTCATATGGGTGGTCAAGGTCAAATGGGT
GGTCAGGGTCAAATGAACCAAATGGGTCAAATGAACCAAATGGGC
Right flanking sequence: Indices 17778 -- 18277
GGGCCCGGCTACGGCCAGTACCAGAACCAGAACCAGTTCAACCAGCCCTTCCAGAACCAGCCCTA
CAACCAACCCCAACAGTACCAGCAGTACCAAGGCCAGCCGGGCCAGGGGTTCCAGCCGGGCCCCA
GCCCCGTGATGGAGCTGCCCAACCAGGCCCAGGGCCAATTCTCGCATAGCCTGCCCCAGCTCGCC
CAGGGCGGGTTCCAAAACCCGCCTCCGTTGGCATCGCACCCGTCAAAGCAGCTGGTGGACCTGTT
GCACCAGGTGATCGAGGAGGAAGACGAGCCACCGGAGCAGCCGCGCTACCCAGACTTGAACGAAG
AACTGCCGCTGGCGTCGTCCGCCCTGCTCAACAAGGAGTTGCCGCTGCTCCCGCCCGCAAAACTG
ATGCTGATGAAGCTGACGCTGACCCTGGGCCTGAAGGGCCGCAAGGCCCCGCCCGACCTCGACGA
CGAGTTGTCGCGCCAGGACCTGTTCCAGCTGTCGCTGAGCAAGTT
Found at i:17719 original size:54 final size:54
Alignment explanation
Indices: 17661--17774 Score: 167
Period size: 54 Copynumber: 2.1 Consensus size: 54
17651 TCAAATGAAC
* * *
17661 CAAATGGG-TCAAATGAACCAAATGGGCCAAATGAACCAAATGGGACCTAACGGA
1 CAAATGGGCCCAAACGAA-CAAATGGGCCAAATGAACCAAATGGGACCCAACGGA
* *
17715 CAAATGGGCCCTAACGGACAAATGGGCCAAATGAACCAAATGGGACCCAACGGA
1 CAAATGGGCCCAAACGAACAAATGGGCCAAATGAACCAAATGGGACCCAACGGA
17769 CAAATG
1 CAAATG
17775 AACGGGCCCG
Statistics
Matches: 54, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
54 49 0.91
55 5 0.09
ACGTcount: A:0.41, C:0.23, G:0.25, T:0.11
Consensus pattern (54 bp):
CAAATGGGCCCAAACGAACAAATGGGCCAAATGAACCAAATGGGACCCAACGGA
Left flanking sequence: Indices 17161 -- 17660
CGCAGATGAAGATGGCCTACGCCAACGGGGCCCGGGCCAACAGTATGGCCACGGGGATGGGTGTG
GGCGGCATGGGCGGCGACCCACGCACCATGAGCTTCAACTCGTACGGCGATCCGCGCACGATGTC
GATGATGTCTGGTCCGCGAGGCCCCGCCGGCCCGAGACAGGGCCCGCGGACGATGTCGTTGATGA
ACAACAACCGGGCGCAGCCGTACGCGCGGGCCAACCTGATGCAGGGGCCCGGGGGTCCGCGGACG
ATGTCGATGAACGGGCCCAACCGGTTTGGCCCGATGGCTCCGCCGATGGCCCCTGCGATGGGGGG
CCTGAGAAACAATCTGTTGGGGAAGAACGGGTATGGTCCAGGGATGGGCCAAGGAATGGGGCCCA
ATGGCCAGATGGGTGGTCAAATGGGTCAAATGGGTCATATGGGTGGTCAAATGGGTCAAATGGGT
CATATGGGTGGTCAAGGTCAAATGGGTGGTCAGGGTCAAATGAAC
Right flanking sequence: Indices 17775 -- 18274
AACGGGCCCGGCTACGGCCAGTACCAGAACCAGAACCAGTTCAACCAGCCCTTCCAGAACCAGCC
CTACAACCAACCCCAACAGTACCAGCAGTACCAAGGCCAGCCGGGCCAGGGGTTCCAGCCGGGCC
CCAGCCCCGTGATGGAGCTGCCCAACCAGGCCCAGGGCCAATTCTCGCATAGCCTGCCCCAGCTC
GCCCAGGGCGGGTTCCAAAACCCGCCTCCGTTGGCATCGCACCCGTCAAAGCAGCTGGTGGACCT
GTTGCACCAGGTGATCGAGGAGGAAGACGAGCCACCGGAGCAGCCGCGCTACCCAGACTTGAACG
AAGAACTGCCGCTGGCGTCGTCCGCCCTGCTCAACAAGGAGTTGCCGCTGCTCCCGCCCGCAAAA
CTGATGCTGATGAAGCTGACGCTGACCCTGGGCCTGAAGGGCCGCAAGGCCCCGCCCGACCTCGA
CGACGAGTTGTCGCGCCAGGACCTGTTCCAGCTGTCGCTGAGCAA
Found at i:19130 original size:21 final size:21
Alignment explanation
Indices: 19104--19162 Score: 73
Period size: 24 Copynumber: 2.7 Consensus size: 21
19094 GGAGAAGGGT
*
19104 GAGTATGGGGAGAAGGTTGAC
1 GAGTATGGGGAGAAGCTTGAC
19125 GAGTATGGGGAGGACGAGCTTGAC
1 GAGTATGGGGA-GA--AGCTTGAC
*
19149 GGGTATGGGGAGAA
1 GAGTATGGGGAGAA
19163 TGACGGGTAT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
21 12 0.36
22 2 0.06
23 2 0.06
24 17 0.52
ACGTcount: A:0.27, C:0.07, G:0.49, T:0.17
Consensus pattern (21 bp):
GAGTATGGGGAGAAGCTTGAC
Left flanking sequence: Indices 18604 -- 19103
TCGGCGCCGCCTCCCACGGCACCGAGGTGTTCCACACGGCGACGCTGACGTTGAACGGGCAGTCG
CCGCAAAAGGACCGCGACCAGCGCGACCAAAAGGACCACTACAACTTCATCAAGCTGCTGCCGGT
GCGCCACCCGATGCTGGAGCTGCCGGAGCTCGACGTGGTGCGCAAGACGTCATCGCTGTCGGGCA
AGCTCAAGCTGCTGCTCGTGGCCAACACCGCGTTCCTGAACTTCCGGTCGCCGTCGTTGGGGTCG
CCGCAGCGGGGCGAGCCGTCGCTCGACACGGCGATGGAGGCGTCCGAGAGCCACGACACCGTGCG
GGGCGACGCCGAGCTGCTTGCGAGCTCGCGGTACGAGGCGGAGCTGGAGACGGCCACGCCGGTGA
ACGCGTCCAAGTCGCTGACCAACCCGTACAAGTACGCGTCGCAGAGCTCGGTGGCGGAGGGGGAC
GAGACGTTCCGGCAGTATGGGTACGGGGAGAATGGGGAGAAGGGT
Right flanking sequence: Indices 19163 -- 19662
TGACGGGTATAAGGGCCAGTACAAGGTGAACCAGTACAAGGAGAACCAGTACGACGACCACTACG
CTCAAGAGAACCACGGAGAACAGTTCCAGCAGAAGCAGCTCAACACACGTGACCAGCTCGACCAA
CACCAGCACGACCAGTCCCACACCCAACCCCAGTTCGACCAGCCACCAGAAGTCCCCCCGAAGCC
CTACCAGAACATGGGCAACGGCTACGGCTACTCCGACACCGAGCCGTCGCTGGGCGTGGACCAGG
ACCTGCGGTTGAGCTACCCAACCAGCAACCAGTACCTGGCCACCCAGACGCTGGAGGTGTCGCGC
GAGCCGAAGCGCATGTCGTACGCGCTGACGGAACCCCTCCCGATAGAGGAACCCACCACGCCCGA
GCTGCGACGCGCATCGCGGCTGTCAAAGACGTTCTCGCTCACCAAGCTGTCGAAGAACTTTTTGA
AGCGGCTCCTGAAGGGCAACCGCAAGTCGAGCGCCGAGGGCGACA
Found at i:19198 original size:15 final size:15
Alignment explanation
Indices: 19178--19214 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
19168 GGTATAAGGG
*
19178 CCAGTACAAGGTGAA
1 CCAGTACAAGGAGAA
19193 CCAGTACAAGGAGAA
1 CCAGTACAAGGAGAA
19208 CCAGTAC
1 CCAGTAC
19215 GACGACCACT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.41, C:0.24, G:0.24, T:0.11
Consensus pattern (15 bp):
CCAGTACAAGGAGAA
Left flanking sequence: Indices 18678 -- 19177
GACCGCGACCAGCGCGACCAAAAGGACCACTACAACTTCATCAAGCTGCTGCCGGTGCGCCACCC
GATGCTGGAGCTGCCGGAGCTCGACGTGGTGCGCAAGACGTCATCGCTGTCGGGCAAGCTCAAGC
TGCTGCTCGTGGCCAACACCGCGTTCCTGAACTTCCGGTCGCCGTCGTTGGGGTCGCCGCAGCGG
GGCGAGCCGTCGCTCGACACGGCGATGGAGGCGTCCGAGAGCCACGACACCGTGCGGGGCGACGC
CGAGCTGCTTGCGAGCTCGCGGTACGAGGCGGAGCTGGAGACGGCCACGCCGGTGAACGCGTCCA
AGTCGCTGACCAACCCGTACAAGTACGCGTCGCAGAGCTCGGTGGCGGAGGGGGACGAGACGTTC
CGGCAGTATGGGTACGGGGAGAATGGGGAGAAGGGTGAGTATGGGGAGAAGGTTGACGAGTATGG
GGAGGACGAGCTTGACGGGTATGGGGAGAATGACGGGTATAAGGG
Right flanking sequence: Indices 19215 -- 19714
GACGACCACTACGCTCAAGAGAACCACGGAGAACAGTTCCAGCAGAAGCAGCTCAACACACGTGA
CCAGCTCGACCAACACCAGCACGACCAGTCCCACACCCAACCCCAGTTCGACCAGCCACCAGAAG
TCCCCCCGAAGCCCTACCAGAACATGGGCAACGGCTACGGCTACTCCGACACCGAGCCGTCGCTG
GGCGTGGACCAGGACCTGCGGTTGAGCTACCCAACCAGCAACCAGTACCTGGCCACCCAGACGCT
GGAGGTGTCGCGCGAGCCGAAGCGCATGTCGTACGCGCTGACGGAACCCCTCCCGATAGAGGAAC
CCACCACGCCCGAGCTGCGACGCGCATCGCGGCTGTCAAAGACGTTCTCGCTCACCAAGCTGTCG
AAGAACTTTTTGAAGCGGCTCCTGAAGGGCAACCGCAAGTCGAGCGCCGAGGGCGACACGTCGCG
GCGAGCGCTGGCAGCGCTGGTGACCCCGCGGATGGAGGCCAAGCC
Found at i:20836 original size:20 final size:22
Alignment explanation
Indices: 20811--20850 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
20801 GTTTGGTATA
20811 GTGTAGAG-A-GGTGGTGGTGT
1 GTGTAGAGAATGGTGGTGGTGT
20831 GTGTAGAGAATGGTGGTGGT
1 GTGTAGAGAATGGTGGTGGT
20851 TTGGTATGGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 8 0.44
21 1 0.06
22 9 0.50
ACGTcount: A:0.17, C:0.00, G:0.53, T:0.30
Consensus pattern (22 bp):
GTGTAGAGAATGGTGGTGGTGT
Left flanking sequence: Indices 20311 -- 20810
TTCTCCAGGAGAACACCGACCTCAAGTTCCGGGTGATTCCCGAGCTCGAGCGCAAGTTCAAGGAG
GCCGAGCAGCGCAAGATCAACACCCTCACCAAGCAGTTGCTGCTTGTGGGGGCCACCGGGAACAC
GCTGTTTGACGACGCGGACGAGTCGGCGGAGCAGATCGCCACGCTCAAGAAGCAGCGCGAGGAGC
TCCGCGAGGCGGTGTCGTCGCTCACGGTGTCCCACAAAAACGAGTCGCGCCAGTTGACCGACCGC
ATCAAGCAGTTGGAGGGCAAGGTGCGCGAGCTCAAGTCGTTCAACGACAAGCTCAACGGGCGGGT
GGATCCCGACCGCAAGTACGGCACGGCGCTGGGCGGAGGGCGTCTCCAAGAGGGGGGAAAGCTCC
AGGGGTTCCTGATCGTGACGGGCACCAACAAGCTCTTTGACGCGTAGATTGCATTTGTATTATAT
AAACGGGAGTTAGATTGTTGGAAGGTGTGGTGGTGGTTTGGTATA
Right flanking sequence: Indices 20851 -- 21350
TTGGTATGGTGTAGAGATTGAGTGGATTAATGTATGGTGTAGAGAGCGGTGGGTGGTTTGGTTTA
TGTATGGTGTAGAGAATCCTGGGTGGTTTGGTTTATGTACTGTGGTTGTCTGGTGGGGTGGTGTG
TGGTGTGGTTGGTGGTGTCTGGTAGGTGTCTGGCGGTTGCTGGTTTAAACTAGTCTTTTTCTTGA
TTCTTGGTTGTCTTGTCATATTGGTTGCAAATAAAATGGGTGAAAAAATCTCAAGGATATTTTCA
AATCGATATGTGGGACTCTATAATAATTAGTGTCCTGGGCATTTATCACTCCACTAACCCACCAC
ACCCCCTAACCCACCATACCCCCCCTTATTAAACTTCATCAATATTCATTACCTATTACATTATT
TTGTCATTAACTAAACCCAAACGGGGGAGGCGACATCACGGTGGGACACCCCGGTTGCTCGCCCA
AGTCGTCGCAGCACTGCTTACACAACAACAACCGGAACCCTTCAA
Found at i:20926 original size:35 final size:35
Alignment explanation
Indices: 20880--20954 Score: 116
Period size: 35 Copynumber: 2.1 Consensus size: 35
20870 GAGTGGATTA
*
20880 ATGTATGGTGTAGAG-AGCGGTGGGTGGTTTGGTTT
1 ATGTATGGTGTAGAGAAGC-CTGGGTGGTTTGGTTT
*
20915 ATGTATGGTGTAGAGAATCCTGGGTGGTTTGGTTT
1 ATGTATGGTGTAGAGAAGCCTGGGTGGTTTGGTTT
20950 ATGTA
1 ATGTA
20955 CTGTGGTTGT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
35 35 0.95
36 2 0.05
ACGTcount: A:0.17, C:0.04, G:0.40, T:0.39
Consensus pattern (35 bp):
ATGTATGGTGTAGAGAAGCCTGGGTGGTTTGGTTT
Left flanking sequence: Indices 20380 -- 20879
AGCAGCGCAAGATCAACACCCTCACCAAGCAGTTGCTGCTTGTGGGGGCCACCGGGAACACGCTG
TTTGACGACGCGGACGAGTCGGCGGAGCAGATCGCCACGCTCAAGAAGCAGCGCGAGGAGCTCCG
CGAGGCGGTGTCGTCGCTCACGGTGTCCCACAAAAACGAGTCGCGCCAGTTGACCGACCGCATCA
AGCAGTTGGAGGGCAAGGTGCGCGAGCTCAAGTCGTTCAACGACAAGCTCAACGGGCGGGTGGAT
CCCGACCGCAAGTACGGCACGGCGCTGGGCGGAGGGCGTCTCCAAGAGGGGGGAAAGCTCCAGGG
GTTCCTGATCGTGACGGGCACCAACAAGCTCTTTGACGCGTAGATTGCATTTGTATTATATAAAC
GGGAGTTAGATTGTTGGAAGGTGTGGTGGTGGTTTGGTATAGTGTAGAGAGGTGGTGGTGTGTGT
AGAGAATGGTGGTGGTTTGGTATGGTGTAGAGATTGAGTGGATTA
Right flanking sequence: Indices 20955 -- 21454
CTGTGGTTGTCTGGTGGGGTGGTGTGTGGTGTGGTTGGTGGTGTCTGGTAGGTGTCTGGCGGTTG
CTGGTTTAAACTAGTCTTTTTCTTGATTCTTGGTTGTCTTGTCATATTGGTTGCAAATAAAATGG
GTGAAAAAATCTCAAGGATATTTTCAAATCGATATGTGGGACTCTATAATAATTAGTGTCCTGGG
CATTTATCACTCCACTAACCCACCACACCCCCTAACCCACCATACCCCCCCTTATTAAACTTCAT
CAATATTCATTACCTATTACATTATTTTGTCATTAACTAAACCCAAACGGGGGAGGCGACATCAC
GGTGGGACACCCCGGTTGCTCGCCCAAGTCGTCGCAGCACTGCTTACACAACAACAACCGGAACC
CTTCAAGAAGCCTTTCGATCTCCGCAGGCCGGTGCGAACAGCATACGCAAATCGAGTTCATGCCT
ACTTTGTCATCGACTCCCGCCCCCAGCGAACCGGGCAATTATATA
Found at i:21201 original size:19 final size:17
Alignment explanation
Indices: 21164--21198 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
21154 TATCACTCCA
21164 CTAACCCACCACACCCC
1 CTAACCCACCACACCCC
*
21181 CTAACCCACCATACCCC
1 CTAACCCACCACACCCC
21198 C
1 C
21199 CCTTATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.63, G:0.00, T:0.09
Consensus pattern (17 bp):
CTAACCCACCACACCCC
Left flanking sequence: Indices 20664 -- 21163
CTGGGCGGAGGGCGTCTCCAAGAGGGGGGAAAGCTCCAGGGGTTCCTGATCGTGACGGGCACCAA
CAAGCTCTTTGACGCGTAGATTGCATTTGTATTATATAAACGGGAGTTAGATTGTTGGAAGGTGT
GGTGGTGGTTTGGTATAGTGTAGAGAGGTGGTGGTGTGTGTAGAGAATGGTGGTGGTTTGGTATG
GTGTAGAGATTGAGTGGATTAATGTATGGTGTAGAGAGCGGTGGGTGGTTTGGTTTATGTATGGT
GTAGAGAATCCTGGGTGGTTTGGTTTATGTACTGTGGTTGTCTGGTGGGGTGGTGTGTGGTGTGG
TTGGTGGTGTCTGGTAGGTGTCTGGCGGTTGCTGGTTTAAACTAGTCTTTTTCTTGATTCTTGGT
TGTCTTGTCATATTGGTTGCAAATAAAATGGGTGAAAAAATCTCAAGGATATTTTCAAATCGATA
TGTGGGACTCTATAATAATTAGTGTCCTGGGCATTTATCACTCCA
Right flanking sequence: Indices 21199 -- 21698
CCTTATTAAACTTCATCAATATTCATTACCTATTACATTATTTTGTCATTAACTAAACCCAAACG
GGGGAGGCGACATCACGGTGGGACACCCCGGTTGCTCGCCCAAGTCGTCGCAGCACTGCTTACAC
AACAACAACCGGAACCCTTCAAGAAGCCTTTCGATCTCCGCAGGCCGGTGCGAACAGCATACGCA
AATCGAGTTCATGCCTACTTTGTCATCGACTCCCGCCCCCAGCGAACCGGGCAATTATATATACA
ATGGTTGCAAGTGTCCGACAATGTGCATCATGTCTCCTGCGGGTGGTTGCGAGCCACCCGCTAAT
CATCAAGTTGCCAAGTCAGGCAACCAATACAACGATAAATTGATGTCGCCACTATTGGCTGGAGG
CAGTGTCAGGGGCGTCGGCTGTGGCCGCTACGACAAACCGGTTGTCAGTTGCCTGACCCGTAATT
TGGGGGATCGTTCTCGGCTGTCGTCATGACTGCCAGCTGCGATGG
Found at i:28389 original size:13 final size:13
Alignment explanation
Indices: 28379--28420 Score: 75
Period size: 13 Copynumber: 3.2 Consensus size: 13
28369 ATTAGTCTTT
28379 AAGAATAGTCTAC
1 AAGAATAGTCTAC
28392 AAGAATAGTCTAC
1 AAGAATAGTCTAC
*
28405 AAGAGTAGTCTAC
1 AAGAATAGTCTAC
28418 AAG
1 AAG
28421 TGAATTTAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
13 28 1.00
ACGTcount: A:0.45, C:0.14, G:0.19, T:0.21
Consensus pattern (13 bp):
AAGAATAGTCTAC
Left flanking sequence: Indices 27879 -- 28378
ACTGGGCCCTGGCGGTGTTCCTACTGTTTATCGGGTTTGCGCTGATCGGGTGGATCTGGTGGGGC
CGTGGTGGGTTTGAGGGCCCCGTTATCGACACCGACCACTGGCACGAGCTCCACGACTTCGAGGT
GGACTCGGTGGCTGCGGACCTGGACCAGTTCATCATTGACGACGATGACGACGATGTGGTGATTA
CGACACACGACGACGACGACGAGCGGACCATCGCGGGCGACGACTACGACTTGGGCAACACCGTG
GGCGGGTCGGACCCCATCCGCAAACAGACCCGGCTTCCGCTGGGCGAAGTACTCTTTCTGGTATG
ACCTCATTGTGCATGTTATAGAATTATAGACAGTAATGGGATAGACACTGACGATTGTTGTGATG
TCAATTTCTGACTAATTGATGGGATTTTCAGACACGGGCCAGGAGTCCCGGATCGGACATAAGTC
ACAGACGGTGAAAATATGACTCAAATTGTACGAGGATTAGTCTTT
Right flanking sequence: Indices 28421 -- 28920
TGAATTTAAAAGTTTAGTCCACAAGTAGTAGTCTACAACTCATATACTCACAGTCCACAACTCAC
AGTCTAACTCGTAGCCCACACTCACATCCCGCCGTATCTTCTCTCCATTTCTTTTCGATGGCTCA
CGTGACTGCGTCCAGTGGCGAGCGCTTAAAATTTTCAGTGAGCGCTGCCAGACAGAGACTTCCGA
AATGAGTGCCGACCATGCGAGAGACCCTTGTCCTATTGTCATTTTGAACGACTTCGGCGGTGCGT
TCGCCATGGGTGTCATTGGTGGCTGTGTGTGGCACGGCATCAAGGGGTTCCGTAACTCGCCCTAC
GGCGAACGCCGGTACGGAGCCATCTCCGCCATCAAGGCGCGGGCCCCCGTGGTGGGCGGCAACTT
CGGTGTGTGGGGTGGCTTGTTCCTGACGTTTGACTGCTCGGTCAAGGCTGTCCGCAAGCGGGAGG
ATGCCTGGAACGCGGTGATTGCCGGTTTCTTCACCGGTGGTGCCT
Found at i:31829 original size:23 final size:23
Alignment explanation
Indices: 31803--31866 Score: 96
Period size: 23 Copynumber: 2.8 Consensus size: 23
31793 TGAGATTATT
31803 TCGACTCAGAGAGCCTTT-TGAAA
1 TCGACTCAGAGAG-CTTTGTGAAA
*
31826 TCGACTCAGAGAGCTTTGTGAAG
1 TCGACTCAGAGAGCTTTGTGAAA
31849 TCGACTCAGAGAG-TTTGT
1 TCGACTCAGAGAGCTTTGT
31867 TTGAAGTCGA
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
22 9 0.23
23 30 0.77
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (23 bp):
TCGACTCAGAGAGCTTTGTGAAA
Left flanking sequence: Indices 31303 -- 31802
AGCTGTACGACGAGTACCTCGAGTTCTTGGCCCACTCCAAGGGCAAGGAGGACAGCTTGAAGAAG
GAGCAGCCCAACAAAAACTACTTTAAGCACCGCAGCTTGAGCGACATCATCCTCAACTACAAGAT
GCCGCTGAAGAAAATGACCAACTCCATGATTGAAAAGGAGTGTCACGAACGCATGTTGCTCATAG
ACTTTTTGACCAAGGTGCTCAACTTGAACCCGGTGGAGCGTCTTACGCCGCAGGAGGCCCTCAAA
CACCCGTTTGTCAACGAGGCCGCCCGTGACCAGTCATAGTACGTACATTAATTCATTGCATCGAT
TGAAGGGTAGGGTTGGTTGAGGAGATGTTGACCGAGGGGAGATTCTTGAAGACTCGAGGAGGAGG
TTGTGTGAATTCGTTTGAAAGGAATTGTTGACGTCGACTCTAGTAGTATGTGTTTGGAGTCTACT
CAAAAAAGAGACTAGTATGAGTTCCACTCAACTAGTGAGATTATT
Right flanking sequence: Indices 31867 -- 32366
TTGAAGTCGAGTGAAGAACGAATTAGGTCACAGATCAACTGCAGAAAGGAATTGGCTCTTCTAAC
GGGATGCACTGACCTGATCACCAACGCAAGATGCCCTCCTTCAATGGCATTTCAACCCCATACTT
ATGACCGTTGTGTCCTTATTATATATGCGGTGTCATAAGACGCCTGGATATTTTACCACAATAAT
TACATAATTCATCTGGCACACTATCAGTCATCATCTCACCACCACATCCGCTGTGTCCTCTGTTT
CACAGACATTAATTTCACCTTGCAACCCCACAAGTAATCTCTTGGGACTACCTACTTTATACCAT
ACAGCTACAGCTACCTACGCCTACAGCTTACCTACACCTAGCCTACATACACCATCTTGGGTGCA
TACTCCGACGCGGGTAGCCCGCTGTGCCTGACCCCACAGGGCTTTGTGAATATACGAGGGGTCCC
ACCACCACCTCCTTCCCCACCGGTGCTTTTCCGACATCTCATGCT
Found at i:32217 original size:16 final size:17
Alignment explanation
Indices: 32186--32231 Score: 58
Period size: 17 Copynumber: 2.7 Consensus size: 17
32176 ACCTACTTTA
*
32186 TACCATACAGCTACAGC-
1 TACC-TACACCTACAGCT
*
32203 TACCTACGCCTACAGCT
1 TACCTACACCTACAGCT
32220 TACCTACACCTA
1 TACCTACACCTA
32232 GCCTACATAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 10 0.40
17 15 0.60
ACGTcount: A:0.30, C:0.39, G:0.09, T:0.22
Consensus pattern (17 bp):
TACCTACACCTACAGCT
Left flanking sequence: Indices 31686 -- 32185
GAGGAGGTTGTGTGAATTCGTTTGAAAGGAATTGTTGACGTCGACTCTAGTAGTATGTGTTTGGA
GTCTACTCAAAAAAGAGACTAGTATGAGTTCCACTCAACTAGTGAGATTATTTCGACTCAGAGAG
CCTTTTGAAATCGACTCAGAGAGCTTTGTGAAGTCGACTCAGAGAGTTTGTTTGAAGTCGAGTGA
AGAACGAATTAGGTCACAGATCAACTGCAGAAAGGAATTGGCTCTTCTAACGGGATGCACTGACC
TGATCACCAACGCAAGATGCCCTCCTTCAATGGCATTTCAACCCCATACTTATGACCGTTGTGTC
CTTATTATATATGCGGTGTCATAAGACGCCTGGATATTTTACCACAATAATTACATAATTCATCT
GGCACACTATCAGTCATCATCTCACCACCACATCCGCTGTGTCCTCTGTTTCACAGACATTAATT
TCACCTTGCAACCCCACAAGTAATCTCTTGGGACTACCTACTTTA
Right flanking sequence: Indices 32232 -- 32731
GCCTACATACACCATCTTGGGTGCATACTCCGACGCGGGTAGCCCGCTGTGCCTGACCCCACAGG
GCTTTGTGAATATACGAGGGGTCCCACCACCACCTCCTTCCCCACCGGTGCTTTTCCGACATCTC
ATGCTGGCCCGACACGGTATAGCCCGGTGTCGCACCGATGACGCTGCCAAGATACAAAGGCCAAG
AATCGAGACAAAAAAGGCAAGAAAAACGGATCGCCAGCCACAGACAAACCCGGCGCCCGAAGCCG
TAAAATAACCCACAACTGCACCCACCACCACCACCTCTCCCCAACCCTCTTCGCTGCCACCTCTC
TCCCACCCGTGATCGCCTCCCGCTTCGCCCCCGCCGCCATGCCGTCCCTGACCAAAACGGATTTC
CACCCTCGGCCATATGCAGGCGGGCAATGCACTATCGGCGCCACTGTTAAAAAGGTGCACCTGTG
CTCGGGCTGACAAAAGTACCCCCAAATGCCGCCATTAGCCACCCG
Found at i:33528 original size:17 final size:15
Alignment explanation
Indices: 33508--33560 Score: 52
Period size: 17 Copynumber: 3.1 Consensus size: 15
33498 AGTGTAGGTT
33508 TGAGCATTGCGGGTTTG
1 TGAGCATT--GGGTTTG
33525 TGAGAGCATTGGGTTTG
1 T--GAGCATTGGGTTTG
33542 TGAGAGCATTGGGTTTG
1 T--GAGCATTGGGTTTG
33559 TG
1 TG
33561 TAACATGGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
15 1 0.03
17 26 0.76
19 7 0.21
ACGTcount: A:0.15, C:0.08, G:0.42, T:0.36
Consensus pattern (15 bp):
TGAGCATTGGGTTTG
Left flanking sequence: Indices 33008 -- 33507
GGGCTACTACGACAACCAGGGCAAGTTCCACGCCAACCCGAACGCCAAGGCGCCCATCCCAGAGG
TGCACGTGCGCCAGACGTCGATGCTGAACGCAGCGCCCATCCTGAATCTCGACAGTGTCGACGAC
GAGGACGACTTGTACCGGCGGCCGCCCGCAGGCCCCAACCGGCCTGGTGCGCCCACTTCTGAAGT
TGGCGGTGGTAGCCCCAGCGATGGGACCGCCAACGGTGCCAGCACCAGTGGCCCAGGAGCCAACC
CCGTGGCGTCGTCGCTGGCCGATAGCATTGCCCCGCCTCCGGGCCCCCCTCCGGAGCGAAGCTGA
CCGCGACCGCGGAGAAAAGGACCTAGTTCATAGTCACGCCGTAATGATAAGACGTCTGATATGTG
ATTTGTAGGAGTGTAGTGTGAGTGGTTTGGATGGATTTGAGAGGTTTGTGGGTTTGTGGGTGTAT
GGAGGGTTTGTGCTACATTGTGGGTTTGTGAGATCAGTGTAGGTT
Right flanking sequence: Indices 33561 -- 34060
TAACATGGTACCTGTGTCGTGTGGATTCAATGGGAAGAATCAAGTTTGTAGCGAGCACTGTAACT
AGTTCTACTGTATTTGGGTGTACCACTAGTTTTAATGTGAGTTCCATTGCGAGTGTGTACTCTGG
TGTAGAACACTAATTAATACGAGCGTGTACTATTTCTAACGTGAGCGTCTGGTATGGAACTGTAG
CGTCTACTCTAATGTTTTGGTGTACCATTGCTAATATACAATAATTACGTCCATGTCCCCAATGT
CGCTATCAAAGCGTTAGATCTTATATTCATCACCATGCGAACCATTTAGAAACTCCAATTGAACG
GGATGCTCCGGGTCCAAGTAGTTCACCCGCGCATTGCACGGCAACTCCACCACCTCGCGGTCGTA
GACACACCGGAAGATGCCCGTGTTCTCGAGCGGCCACCGCCAGGTGAGCATCTCCAGCACGGGCT
GCAGCACAGGCCGGGTGGCCTCGTAGAGCGCGTCCACCAACTCTC
Found at i:33533 original size:19 final size:17
Alignment explanation
Indices: 33518--33560 Score: 86
Period size: 17 Copynumber: 2.5 Consensus size: 17
33508 TGAGCATTGC
33518 GGGTTTGTGAGAGCATT
1 GGGTTTGTGAGAGCATT
33535 GGGTTTGTGAGAGCATT
1 GGGTTTGTGAGAGCATT
33552 GGGTTTGTG
1 GGGTTTGTG
33561 TAACATGGTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.14, C:0.05, G:0.44, T:0.37
Consensus pattern (17 bp):
GGGTTTGTGAGAGCATT
Left flanking sequence: Indices 33018 -- 33517
GACAACCAGGGCAAGTTCCACGCCAACCCGAACGCCAAGGCGCCCATCCCAGAGGTGCACGTGCG
CCAGACGTCGATGCTGAACGCAGCGCCCATCCTGAATCTCGACAGTGTCGACGACGAGGACGACT
TGTACCGGCGGCCGCCCGCAGGCCCCAACCGGCCTGGTGCGCCCACTTCTGAAGTTGGCGGTGGT
AGCCCCAGCGATGGGACCGCCAACGGTGCCAGCACCAGTGGCCCAGGAGCCAACCCCGTGGCGTC
GTCGCTGGCCGATAGCATTGCCCCGCCTCCGGGCCCCCCTCCGGAGCGAAGCTGACCGCGACCGC
GGAGAAAAGGACCTAGTTCATAGTCACGCCGTAATGATAAGACGTCTGATATGTGATTTGTAGGA
GTGTAGTGTGAGTGGTTTGGATGGATTTGAGAGGTTTGTGGGTTTGTGGGTGTATGGAGGGTTTG
TGCTACATTGTGGGTTTGTGAGATCAGTGTAGGTTTGAGCATTGC
Right flanking sequence: Indices 33561 -- 34060
TAACATGGTACCTGTGTCGTGTGGATTCAATGGGAAGAATCAAGTTTGTAGCGAGCACTGTAACT
AGTTCTACTGTATTTGGGTGTACCACTAGTTTTAATGTGAGTTCCATTGCGAGTGTGTACTCTGG
TGTAGAACACTAATTAATACGAGCGTGTACTATTTCTAACGTGAGCGTCTGGTATGGAACTGTAG
CGTCTACTCTAATGTTTTGGTGTACCATTGCTAATATACAATAATTACGTCCATGTCCCCAATGT
CGCTATCAAAGCGTTAGATCTTATATTCATCACCATGCGAACCATTTAGAAACTCCAATTGAACG
GGATGCTCCGGGTCCAAGTAGTTCACCCGCGCATTGCACGGCAACTCCACCACCTCGCGGTCGTA
GACACACCGGAAGATGCCCGTGTTCTCGAGCGGCCACCGCCAGGTGAGCATCTCCAGCACGGGCT
GCAGCACAGGCCGGGTGGCCTCGTAGAGCGCGTCCACCAACTCTC
Found at i:40312 original size:18 final size:18
Alignment explanation
Indices: 40289--40356 Score: 68
Period size: 18 Copynumber: 3.8 Consensus size: 18
40279 CTCAACACCG
*
40289 TTCACTCTTCACCAACAC
1 TTCACTCTTCACCACCAC
*
40307 TTCACT-TT-TCCACCAC
1 TTCACTCTTCACCACCAC
* *
40323 TCCACTCTACACCACCAC
1 TTCACTCTTCACCACCAC
*
40341 CTCTACTCTTCACCAC
1 TTC-ACTCTTCACCAC
40357 TACGTCCACC
Statistics
Matches: 39, Mismatches: 8, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
16 11 0.28
17 3 0.08
18 14 0.36
19 11 0.28
ACGTcount: A:0.24, C:0.49, G:0.00, T:0.28
Consensus pattern (18 bp):
TTCACTCTTCACCACCAC
Left flanking sequence: Indices 39789 -- 40288
TAGTGAGTTATTTCTTTGGTATTACCAACGCAGAATGTTTCGGCATTTCACCAACATCAATAAAA
GAAATTGCGCTTCTTGGTACTTATTTCTCATCGGCATTACCTTCTTCTGTCCCCCACTGCGCCGT
CGCTAACGTGGACCATATTATACGACGTTGTCGCGGGGTTGACATCTTTCATTGGCCAACCAGTG
TTGATGTCTCTACCACTTGAACACGCTTGGCACGAGCATTCTTGGCACTACTTATCTTCATCGCT
CCTGCGACATTCACCGCTTTTGGCACTGTAAAAGTCTCGTAGACACAGCCCGGACTTAACACTCT
TCACAAGATTGGCGCTCTTGTTATTTTGACGGTTCCACTTTTAATTTTCTAACCGCTAATATACA
TTCACTAACTCCGTGCCGATACTCTATTGTTCAATACTCCACGGTTAAAAGTCGACCACGCATGG
TCGTCCAGTTAACCCTGGTATCATTTATCTCACCACTCAACACCG
Right flanking sequence: Indices 40357 -- 40856
TACGTCCACCACCACCACCACAACCACCCAACTCTCGTCCTTCGTACGTCTATTATATATTCCCA
AAGATATCTATATAAACGGTCACACGCAGTGTGCCGCGATGTGTCCCTTAGTTATGCCCAACAAG
AGATAATTACTTTTTCTTCAGCTTGGCGCTGCCTTCAAACCCAGCACGCTTCTTGGGGCCGGTCT
TGGGACCACCCTTTGCGTTCACAATTCCGGTAAACTTCTTCAACTTCGGCAACTGCTTGCGCTTC
TTGCCATGCACCCCCTTGGAGTCCTTGCGGGCTGCCAAGTTCTCCTCACGGCGTTTCTGCCGGGC
CGCGATCGTGTCCTTGACCGTCTGTTTGCGGTCCTTCCACTCACGCTCCAGCTTCATCTTTTGCT
TCTCCTTGCGCTTGATGGCCTTTTTCAAAAGCTTCTCGTCGTCCTTGTGCTTGACGCCCTCCGCC
TGCTGCATCACCTTCATCCACTTCTCCTTCTCCATCTCCTTCTTC
Found at i:40354 original size:19 final size:18
Alignment explanation
Indices: 40316--40377 Score: 56
Period size: 19 Copynumber: 3.4 Consensus size: 18
40306 CTTCACTTTT
40316 CCACCACTCCACTCTACA
1 CCACCACTCCACTCTACA
* *
40334 CCACCACCTCTACTCTTCA
1 CCACCA-CTCCACTCTACA
*
40353 CCACTACGTCCAC-C-ACCA
1 CCACCAC-TCCACTCTA-CA
40371 CCACCAC
1 CCACCAC
40378 AACCACCCAA
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
18 16 0.46
19 19 0.54
ACGTcount: A:0.26, C:0.56, G:0.02, T:0.16
Consensus pattern (18 bp):
CCACCACTCCACTCTACA
Left flanking sequence: Indices 39816 -- 40315
ACGCAGAATGTTTCGGCATTTCACCAACATCAATAAAAGAAATTGCGCTTCTTGGTACTTATTTC
TCATCGGCATTACCTTCTTCTGTCCCCCACTGCGCCGTCGCTAACGTGGACCATATTATACGACG
TTGTCGCGGGGTTGACATCTTTCATTGGCCAACCAGTGTTGATGTCTCTACCACTTGAACACGCT
TGGCACGAGCATTCTTGGCACTACTTATCTTCATCGCTCCTGCGACATTCACCGCTTTTGGCACT
GTAAAAGTCTCGTAGACACAGCCCGGACTTAACACTCTTCACAAGATTGGCGCTCTTGTTATTTT
GACGGTTCCACTTTTAATTTTCTAACCGCTAATATACATTCACTAACTCCGTGCCGATACTCTAT
TGTTCAATACTCCACGGTTAAAAGTCGACCACGCATGGTCGTCCAGTTAACCCTGGTATCATTTA
TCTCACCACTCAACACCGTTCACTCTTCACCAACACTTCACTTTT
Right flanking sequence: Indices 40378 -- 40877
AACCACCCAACTCTCGTCCTTCGTACGTCTATTATATATTCCCAAAGATATCTATATAAACGGTC
ACACGCAGTGTGCCGCGATGTGTCCCTTAGTTATGCCCAACAAGAGATAATTACTTTTTCTTCAG
CTTGGCGCTGCCTTCAAACCCAGCACGCTTCTTGGGGCCGGTCTTGGGACCACCCTTTGCGTTCA
CAATTCCGGTAAACTTCTTCAACTTCGGCAACTGCTTGCGCTTCTTGCCATGCACCCCCTTGGAG
TCCTTGCGGGCTGCCAAGTTCTCCTCACGGCGTTTCTGCCGGGCCGCGATCGTGTCCTTGACCGT
CTGTTTGCGGTCCTTCCACTCACGCTCCAGCTTCATCTTTTGCTTCTCCTTGCGCTTGATGGCCT
TTTTCAAAAGCTTCTCGTCGTCCTTGTGCTTGACGCCCTCCGCCTGCTGCATCACCTTCATCCAC
TTCTCCTTCTCCATCTCCTTCTTCTGCTCGTCCTCGGGCAATGCA
Found at i:40355 original size:34 final size:34
Alignment explanation
Indices: 40291--40357 Score: 82
Period size: 34 Copynumber: 2.0 Consensus size: 34
40281 CAACACCGTT
* * *
40291 CACTCTTCACCAACACTTCACTTTTCCACCACTC
1 CACTCTACACCAACACCTCACTCTTCCACCACTC
*
40325 CACTCTACACCACCACCTCTACTCTT-CACCACT
1 CACTCTACACCAACACCTC-ACTCTTCCACCACT
40358 ACGTCCACCA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
34 23 0.82
35 5 0.18
ACGTcount: A:0.24, C:0.49, G:0.00, T:0.27
Consensus pattern (34 bp):
CACTCTACACCAACACCTCACTCTTCCACCACTC
Left flanking sequence: Indices 39791 -- 40290
GTGAGTTATTTCTTTGGTATTACCAACGCAGAATGTTTCGGCATTTCACCAACATCAATAAAAGA
AATTGCGCTTCTTGGTACTTATTTCTCATCGGCATTACCTTCTTCTGTCCCCCACTGCGCCGTCG
CTAACGTGGACCATATTATACGACGTTGTCGCGGGGTTGACATCTTTCATTGGCCAACCAGTGTT
GATGTCTCTACCACTTGAACACGCTTGGCACGAGCATTCTTGGCACTACTTATCTTCATCGCTCC
TGCGACATTCACCGCTTTTGGCACTGTAAAAGTCTCGTAGACACAGCCCGGACTTAACACTCTTC
ACAAGATTGGCGCTCTTGTTATTTTGACGGTTCCACTTTTAATTTTCTAACCGCTAATATACATT
CACTAACTCCGTGCCGATACTCTATTGTTCAATACTCCACGGTTAAAAGTCGACCACGCATGGTC
GTCCAGTTAACCCTGGTATCATTTATCTCACCACTCAACACCGTT
Right flanking sequence: Indices 40358 -- 40857
ACGTCCACCACCACCACCACAACCACCCAACTCTCGTCCTTCGTACGTCTATTATATATTCCCAA
AGATATCTATATAAACGGTCACACGCAGTGTGCCGCGATGTGTCCCTTAGTTATGCCCAACAAGA
GATAATTACTTTTTCTTCAGCTTGGCGCTGCCTTCAAACCCAGCACGCTTCTTGGGGCCGGTCTT
GGGACCACCCTTTGCGTTCACAATTCCGGTAAACTTCTTCAACTTCGGCAACTGCTTGCGCTTCT
TGCCATGCACCCCCTTGGAGTCCTTGCGGGCTGCCAAGTTCTCCTCACGGCGTTTCTGCCGGGCC
GCGATCGTGTCCTTGACCGTCTGTTTGCGGTCCTTCCACTCACGCTCCAGCTTCATCTTTTGCTT
CTCCTTGCGCTTGATGGCCTTTTTCAAAAGCTTCTCGTCGTCCTTGTGCTTGACGCCCTCCGCCT
GCTGCATCACCTTCATCCACTTCTCCTTCTCCATCTCCTTCTTCT
Found at i:41099 original size:9 final size:9
Alignment explanation
Indices: 41087--41111 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
41077 CGTCGTCTTC
41087 GTCGTCGCT
1 GTCGTCGCT
41096 GTCGTCGCT
1 GTCGTCGCT
41105 GTCGTCG
1 GTCGTCG
41112 TCCGCCACCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.00, C:0.32, G:0.36, T:0.32
Consensus pattern (9 bp):
GTCGTCGCT
Left flanking sequence: Indices 40587 -- 41086
TTCTTCAACTTCGGCAACTGCTTGCGCTTCTTGCCATGCACCCCCTTGGAGTCCTTGCGGGCTGC
CAAGTTCTCCTCACGGCGTTTCTGCCGGGCCGCGATCGTGTCCTTGACCGTCTGTTTGCGGTCCT
TCCACTCACGCTCCAGCTTCATCTTTTGCTTCTCCTTGCGCTTGATGGCCTTTTTCAAAAGCTTC
TCGTCGTCCTTGTGCTTGACGCCCTCCGCCTGCTGCATCACCTTCATCCACTTCTCCTTCTCCAT
CTCCTTCTTCTGCTCGTCCTCGGGCAATGCAGCCAAGCGCTCCTTCTTCTTCTCGAGCCGCTGCA
AGTGCGCCTTCAAGTCGTTGTTGGCGGGGCCCTTCTTTTTGCGTTTGTCAGCGGTGTTGCGGAAG
TTGGCCAAATCGGAGGTCACCCGAGTGCCGTCGTTGAACACGATGTTGCCAAAGAGCACCGGGTT
GTTGGCCACCGGCTCCTCCTCGGGCTCGTTGTCGTCGTCGTCTTC
Right flanking sequence: Indices 41112 -- 41611
TCCGCCACCTCGTCCTCCTCACGCTTGCGTTTCTTTCGGAGCTCCTCCTTGCGTTTGCGCTCCTC
CAAGATCTGCTGGCGGGACTTGGGTGCTCCCTCGGCCTTGGTGCCCACCGCCTTACGCTTCTCCT
TCATCAGGTCGATCTTCAGCGCCAACCGCTCTCGGAGCTTTGCGAGGTTGTCGTCGCGTTTCTTT
TGCTCCTCGGGCAGCAACTGCTTCTTTTTGAGCTTGGCGGCCTGCTGGGCCATCTTTTTCGTGGG
CGGCTGGGCCTCGATCTCCTCGCCGTTGTCGTCAAACACGAGCGAGGCCTCGGCGGTGAGCGACT
CTTCCGGCTCGGAGGCGGGAGCCAGCTCGGCGGCCGAGTCCTCGGAGTCGCTGGCGCTCAGGGGC
TCAGGCGCGACAAACCTCGTCGGGAGCTTCACGGGCTTGCCCGTTTTCGCCTTGTTGTCCATCAC
GTCCTTGGCCAGCGCGTGGGCGTTGGTGTAGTCATCGGCCAGTTC
Found at i:42008 original size:10 final size:10
Alignment explanation
Indices: 41993--42025 Score: 57
Period size: 10 Copynumber: 3.2 Consensus size: 10
41983 TGGGGGAACG
41993 GGATGAGGGT
1 GGATGAGGGT
42003 GGATGAGGGT
1 GGATGAGGGT
42013 GGATGACGGGT
1 GGATGA-GGGT
42024 GG
1 GG
42026 GTGTGGGGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 16 0.73
11 6 0.27
ACGTcount: A:0.18, C:0.03, G:0.61, T:0.18
Consensus pattern (10 bp):
GGATGAGGGT
Left flanking sequence: Indices 41493 -- 41992
CTCAGGGGCTCAGGCGCGACAAACCTCGTCGGGAGCTTCACGGGCTTGCCCGTTTTCGCCTTGTT
GTCCATCACGTCCTTGGCCAGCGCGTGGGCGTTGGTGTAGTCATCGGCCAGTTCCTTAGAACTTG
GGTCCAATTTGGCACGCTTGTTTTTGCGGGTGTCGGCCTTCAGCTGTTTCTTCTGCTGCCATTGG
TCCTGGGTGGCGCTGTCGTAGTAGTATTTCGCGGGGATCAACAGTAAAAGCCCGTCGAATGCCAG
CGAGTGGGTCTTGAGTCGTTCCTAAAGGGTTAGTATGGGGACAAGGGTATTTATCCAGGGGTGCT
CCACCACCACTCGACTTTAGCAAGGTGTACCTACTTCAAGTGAATTACTCATGGTTGGTTCAGCG
TCCGGGATCGGTTGGCAATATCCGTTGTCTAGAGAGGCATCTCGTGAGATGGGCTGCGAAAGACG
TAGGTTTTTTCGGGTGTATGCAGGAGAGAGACAGGTGGGGGAACG
Right flanking sequence: Indices 42026 -- 42525
GTGTGGGGGTTAGTGTGGGCGGCGGTGTTGGGGATAGTGGTGGAGGTGTGTGTTGGAGTTAGTAG
AGCTGGGGCTCTTGGTGGTCTGAATCTGCGGTTCACGTAAGCGAGCTGTCAGAGCGATGTGGTGA
GACAAGGGCAGGCGAAGTGAGGGAGAAGAAGAAGATGAGGGTTGGTTTGAGGGCGTAATAGGCTC
TATTACAGGTATTCCTCAGTGCATGGAGTTTCTAGCGCCTATATCGTAAAAACTCCAATTCTTTT
TTATAGTCCGATAGAAACATCTCGTGGAGCATAGGCAGCTAATGTGGGTTTAAAACCCACTTCCT
AAGACACTCTTTCCGTGTTCCTACCCTCCCTGCCACATTCCACACAATTTCAACCCCTGAAGTAG
GCTGCATTGTGTCTACGTTGGGACCTTGTTCCCCTGAGCTTCGTGCCCTGCATATAGTTTTTGCA
GCCACGCCAGGTGGGCCACACCAACCCTACGAAATACTCAACTAT
Found at i:53036 original size:12 final size:12
Alignment explanation
Indices: 53019--53043 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
53009 AAATATGCGG
53019 GTGCGAGTGGTT
1 GTGCGAGTGGTT
53031 GTGCGAGTGGTT
1 GTGCGAGTGGTT
53043 G
1 G
53044 CATGAGCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.08, G:0.52, T:0.32
Consensus pattern (12 bp):
GTGCGAGTGGTT
Left flanking sequence: Indices 52519 -- 53018
TCGTGATGAAGCAGTGCAAGCAGAACCTTGACAAGATCAAGCACACTGCCAACAAGAACTCGCGC
AAGTTTAGACGCCAGTTGAACCACCACGTTAAGAACCACTTGTTCAAGGACTTGGAGAAGTGCTG
CGGCTACCCGCTCGACTTTGGCAAGGCCGAAATTGTCGAGACGCCCGGCAAGATCACCTGGAAGT
ATCACGACACTTCGGACCACGGTTTCTCCCCAGCGGAGGAGGAGCAGTATGGCCGCAAGTGGAGA
TTGGACTTGGACATTTCTTGCACCAATGAAAATGCCATGGTTGAGGTTGACTACAGATCGATGCC
CTGCGACACTGTTGACTAAATACGACCTCCCGGGCTTGGTGTAAGCTGCCCTTGTTTTGTACCAT
AGCTTATACATAGATCCGCCCGTTATGAGTTGATGATTATGAATTATGAAAATATACGTTTGACG
ATTGCTTTAAATTGATTGGCTGTAGGATTGGTTGCAAATATGCGG
Right flanking sequence: Indices 53044 -- 53543
CATGAGCAAACCTTAATTTGGCGGTGTATGTAGGACAGTGTATTGTTCAACATAATCTATACTTT
TAGTTTATAAACGTCTCTCATTACTGCGCGGGAGGCTGGGTATCATTATTTGAGTTTGTTTCGGC
GCCGTCTGTAGTTGCGGCGTCCTTTTCTGTGTCGGGTGGTGACGACTTGCGACCGTGGGACTGGG
CCTGTCTCGAGGCAAAGAAGGCGCTCCACAAGTCGCTATTAACCACGGTTTCGCCCTGCGAGGGT
CCCGAGCTCACCATGGTGTCGATCCCCTCGCCGTTCATCAACGCCATGCTCTCGGCCTCGGTTAA
GCTCTTCTCCTCGATGGCGGCCGACCCCTCGCGGTTGCTGTTGACGTACTCCAACCGCTTGTTGG
CGGCCATGATCGCAATCGACTCTTCCACGGTGTTTTCGATGGCAAACATCCACACCGTCGTCGGC
TTGAACTGGCCAATGCGGTGGATACGCGAGATCGCTTGCAACTCT
Found at i:58066 original size:10 final size:10
Alignment explanation
Indices: 58042--58071 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
58032 GGAGGAGAGC
58042 GAGGAGGGT-
1 GAGGAGGGTG
58051 GAGGAGGGTG
1 GAGGAGGGTG
58061 GAGGAGGGTG
1 GAGGAGGGTG
58071 G
1 G
58072 CGGAAGGAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.20, C:0.00, G:0.70, T:0.10
Consensus pattern (10 bp):
GAGGAGGGTG
Left flanking sequence: Indices 57542 -- 58041
GAGGTTGTTGCGCTCCTGGCGGGCCCGCGTCATCCCCAACACGTAGCACTCCAGCCAGTACACGT
TGTAGAAGTCGGCCAACTCCGGGAGGTGCACCGACATGAGCAAGAACTTGGGGCTCAGCCGCCGG
TGGTACACCATGAGGAGGCAGTTGGCCTTGTCGACGGAGAGGCGGATGTCGGCGGTGGCCAACGC
GAAGCGGCGCTGGCGGCCCGAGGGGTCCAGCAGGTAGTAGTCGGCGATGGGGAGCGGCAGCGGGC
ACTCGAACCCGACGTGGCGGTCCACCAACACCACGGCGTCCGCGGGCATCTCGGGCGGGGTGGCC
GGCTCGGGCGGCGGGGGCAGCGGGGCCCGGGCTCGCGCCTTGCGGGCCTTGTGGTCGAGCTGGGG
CATTTGCCCGTTGGCGACCCGGGTCAACGCGTCGAGATTGAAGTCGACTATCTCCATGGCCCTGG
TTGGTGTGGCAATATGCAGCGCGCGCAGTTTGGTGGGAGGAGAGC
Right flanking sequence: Indices 58072 -- 58571
CGGAAGGAGGGTGGTTTCGGGGAGGCGGAAGGAGGTATGGGAGGCGGAGAAGAGGCGGGGGCGGG
TAGGCGGGTAGGCGGAAGGAGGCGACGAGAGGTGGAAGAGAGGTGGAGGAGGCGGGATTTTAGGG
TATGGTTATGAGTACGGTGAGACAGAGACGGTGTGAGACGGTGCGAGATCAACGTGGGAAGGGGT
GGGGAGACGAAGAGGTAAGTGGTGGAAGGTGGTGAAGATGGGTGGAAGGTGGGTGGTGGAAGGTG
AGACGACGGGGATAGGCGGGTAGGTGGGACGAGGTGGGAGCTGTGCGGAGCGGGTTTAACAGCGG
TGAAGGTGGACCCGATGGTAGGACGCGCAGCCTTGTGGTGGCGCGATAAGGCGATACGGTCGGGA
GGGGTTGCGTGGTTACTGGGTCACGGGCCCGGCAGAACTAGCTGGAGATTTTATAAAATGTCTTG
ATCTCCGGCTTGACTTATTTTCCAGATCGTCCGAATCAGGCAATC
Found at i:58849 original size:24 final size:23
Alignment explanation
Indices: 58800--58868 Score: 75
Period size: 23 Copynumber: 2.8 Consensus size: 23
58790 ACCACACACC
58800 ACACAACCTCACCCACCAACCCA
1 ACACAACCTCACCCACCAACCCA
* *
58823 ACACGACCTTACCCACCAAACCCA
1 ACACAACCTCACCCACC-AACCCA
58847 ACACCACCACCTCATCCCACCA
1 ACA-CA--ACCTCA-CCCACCA
58869 CACTATCCCT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
23 15 0.41
24 9 0.24
25 1 0.03
27 6 0.16
28 6 0.16
ACGTcount: A:0.36, C:0.55, G:0.01, T:0.07
Consensus pattern (23 bp):
ACACAACCTCACCCACCAACCCA
Left flanking sequence: Indices 58300 -- 58799
GAAGATGGGTGGAAGGTGGGTGGTGGAAGGTGAGACGACGGGGATAGGCGGGTAGGTGGGACGAG
GTGGGAGCTGTGCGGAGCGGGTTTAACAGCGGTGAAGGTGGACCCGATGGTAGGACGCGCAGCCT
TGTGGTGGCGCGATAAGGCGATACGGTCGGGAGGGGTTGCGTGGTTACTGGGTCACGGGCCCGGC
AGAACTAGCTGGAGATTTTATAAAATGTCTTGATCTCCGGCTTGACTTATTTTCCAGATCGTCCG
AATCAGGCAATCCTATATTAAGAACGAAAAGAAAGGGGTGCGACAGAATGGGGTGCGAAGTGACT
GAAGGAAATACTAAGACAGATAGAGCAAAAAAAATAAACATGTAGAACGTAAGCGCTCCTTATAG
GCGTATACTAGTCTGATACCTCTTATCACCGAGCTCATCCCTATCTGAGACACGACCTCCTATCA
CAACCACCACCCCTCAAACGAAATAACCACACACCACCACACACC
Right flanking sequence: Indices 58869 -- 59368
CACTATCCCTTTCTTCTCTCCCCTCTCTCCCTCCTTCTCTCCTTCCCCCTCCCCCTCTGTGCACT
CTGTTACGAGCCCGCCGCATCGCGATGCCTCACCTCATCGCAGATTTTCCTCTCTACCAACCACA
CCCCAATGCAGTTACAGTGGAACAATATCTCGACGGTGGCCACTGCCAACGACTTGTTGGACATT
GTCCTCAACCGGACCCAGCGCAAGACGCCCACGGTGATCCGGCCCGGGTTCGCCATCACCCGTAT
CCGGTCGTTCTACATGAGAAAGGTCAGATTCACCGCAGAAGGGTTTGCCGAGAAGTTTGACGACA
TCTTGAACGGCTTCCCCAACATCAACGAGGTGCACCCGTTCCACCGCGACTTGATGGACACCTTG
TACGAGAAGAACCACTACAAGATCTCGTTGGCCGCGGTGCTGCGGGCCAAGACCCTCATCGAGCA
GGTGGCCCGTGACTACGTGCGGTTGCTCAAGTTCGGCCAGCTGTT
Found at i:66399 original size:12 final size:12
Alignment explanation
Indices: 66382--66418 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
66372 TACTAAAAAG
66382 TGGCTTGTGCCA
1 TGGCTTGTGCCA
66394 TGGCTTGTGCCA
1 TGGCTTGTGCCA
*
66406 TAGCTTGTGCCA
1 TGGCTTGTGCCA
66418 T
1 T
66419 AACTCGTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.11, C:0.24, G:0.30, T:0.35
Consensus pattern (12 bp):
TGGCTTGTGCCA
Left flanking sequence: Indices 65882 -- 66381
ACCCCCAGGTCACGGATGGCATTGCCAACCTCATCCTCGTTCCCGTAGATCGCAGCCGTGTCAAT
GTGGCGGTATTTGGCAGCCAAAGCGTTCTTGACCGCCTCCTCGCATTGGCCGGCCTTGGCCTGCC
AAGTGCCAAACCCCACGGCGGGGATGGTGTTGCCGTCGTTCAACTTATAGGTCTTAGTGCAAGTA
GAAGGAGCCATTTTTCGTAGTGTCGTGGTGGTTATTGTTGAGTGATATATATACCAGGTGTCATC
CCTGCATAATGGCCGCGAGGAAGGTGAACTCACGTCATAAGTTGCGGGCCCTGGCATCGGCCCGA
AACTGGCCGGCTCACCAACAAGCGATCGAGTGTTAGATTACACATTTGGCGTACAGGGTAGTCAG
ATCGAAACCGATGGAAGCTTCTAACAGCAAGTGAGCAACGAATGTGGAATAAAAACGTGGGTCAA
CACCAAAGAGCCATGGGGTGCGGTCGGAGTTAAGATACTAAAAAG
Right flanking sequence: Indices 66419 -- 66918
AACTCGTGGTGTGGCTCAGGGCATGGCTAGTCAAGAGGCTGATGCGGAGGCTGAAGCTCCTCAGA
GGCAAATGCGCAATGCCTGTGGCAAGTGACATGTACGATACGTAATCGTGCAATGTATGAACAAG
CGCAGGTCTCGACCCCTGCGGTAGTGCGGAGTTCCGCGGTGGATTTTGGTTCCGAGAAATATGCA
TGTTTTACCTATTGTGTTTGAGAAGTAAAGTCTAAAACAAGCACAGGGAGGAAGCTTGCATAGCC
CCGGTGGGGGACGCCTGAAGGCGCAAAGTTTTTGCGAAGAATACGACTAAAAAGCTAAATTAGCC
TGCATCAATAGGGGGTGGGCGTCTACATAAACAAGGTGATGGAGTATGTTTGGATCTTTAAGCTT
TAGACTTCAATGGCGGGCCCAATGCGGGTTTAGGGCTGGCTCAGGTCCGCTTGACTTCGGATCCG
TTTCGACTCGACGCACTTTTCACTAATTCATGCGAGGAACGGTGG
Found at i:67008 original size:44 final size:44
Alignment explanation
Indices: 66959--67046 Score: 149
Period size: 44 Copynumber: 2.0 Consensus size: 44
66949 CCGGGGCTGG
*
66959 TGTTTAGGGTCCATTCAATCGTGATTCGAATTATAGTAGGAGAA
1 TGTTTAGGGTCCATTCAATCGTGATTCAAATTATAGTAGGAGAA
* *
67003 TGTTTAGGGTCGATTCAATCGTGATTCAAATTCTAGTAGGAGAA
1 TGTTTAGGGTCCATTCAATCGTGATTCAAATTATAGTAGGAGAA
67047 CAATAGTGGC
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.30, C:0.11, G:0.25, T:0.34
Consensus pattern (44 bp):
TGTTTAGGGTCCATTCAATCGTGATTCAAATTATAGTAGGAGAA
Left flanking sequence: Indices 66459 -- 66958
GATGCGGAGGCTGAAGCTCCTCAGAGGCAAATGCGCAATGCCTGTGGCAAGTGACATGTACGATA
CGTAATCGTGCAATGTATGAACAAGCGCAGGTCTCGACCCCTGCGGTAGTGCGGAGTTCCGCGGT
GGATTTTGGTTCCGAGAAATATGCATGTTTTACCTATTGTGTTTGAGAAGTAAAGTCTAAAACAA
GCACAGGGAGGAAGCTTGCATAGCCCCGGTGGGGGACGCCTGAAGGCGCAAAGTTTTTGCGAAGA
ATACGACTAAAAAGCTAAATTAGCCTGCATCAATAGGGGGTGGGCGTCTACATAAACAAGGTGAT
GGAGTATGTTTGGATCTTTAAGCTTTAGACTTCAATGGCGGGCCCAATGCGGGTTTAGGGCTGGC
TCAGGTCCGCTTGACTTCGGATCCGTTTCGACTCGACGCACTTTTCACTAATTCATGCGAGGAAC
GGTGGTGAATGAGAAAGCAATCGGGGGCTCAGCAACCGGGGCTGG
Right flanking sequence: Indices 67047 -- 67546
CAATAGTGGCTAGGAGCGTCGGCCAGGGGACAATGTCATTTATCACGAGTAAGGTGTCAAGTCGC
AAGCAACGTCAGCACAGACATCCCGGATAGGTAGTTTTACCCGTGGATACTGCGTGACTTGCCTA
CATCCCACTCACTGCCTACATCCACTCGCTTCAACCTAGAGGCGGTCCCCCAACTGCACGGCTTG
GACTACGGATGCAAGATTATCAAATCTTGCGCGAATGTAACAGTGACATTGAGGTCTATGGCAGT
TTACCCCCGGTTAATGTAGTTGTATCTCTTCAATATGACCTTGAACCATTGGCTGCCCCTCAATC
GAATCGCGGGCGAAGCAATTTTTCTTGTTGTGGATCGTGGCTTAAGCTGTCGCGAACATGTCAAA
AGCCTGTCAATAGGATTCGACTGCAGAAACTCTGTACAGAAATCCCGGACCTCTTGCAATTGCGT
GAGCTGCAAGCGTCACCCGGGGCGCGATTAAAGTTCATAATATCA
Found at i:70473 original size:13 final size:13
Alignment explanation
Indices: 70455--70498 Score: 61
Period size: 13 Copynumber: 3.4 Consensus size: 13
70445 GGGTGTTGGC
70455 TGGTGCTGGTGGT
1 TGGTGCTGGTGGT
70468 TGGTGCTGGTGGT
1 TGGTGCTGGTGGT
* * *
70481 TGGCGTTGGTAGT
1 TGGTGCTGGTGGT
70494 TGGTG
1 TGGTG
70499 GTACTGGCTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.02, C:0.07, G:0.52, T:0.39
Consensus pattern (13 bp):
TGGTGCTGGTGGT
Left flanking sequence: Indices 69955 -- 70454
ATCAAGAGAATCTCCCCGTTGTACGAAATGATCCGGCAGTTGTACTTGATCAGGTGGTGGATGAC
GGGGATACCGATGTCCACCACAAGCCCGTGGGTGGCCTCGTCAGAAATGATGTCGCGGTACATCA
ACCAGCACTGCTCGTACACCTCGTTTTCGCCAAAGTGGTCCAAGCATCCGTAGCCACTGAGCTCG
AGCTCGGGTCCTACCCGGAGCAGGGCCCCGGCCTTTTTCGCCTCGCGGATCGATTCGAGGATACG
GTCGCGGTTTCCTTCAAAGTCTAGCGCCCACTGGTTCAAGTTGCACGTGGCAACAGTGACAAAGT
GGCCCATGGTGTGTGCAATTGGTGGTTTTCGCCGGCTATGGTGGCCTAGTGGTTGCTCGGAAAAC
GACTTGGCGCGGCGCAGGGCTGCTAACCCCGGTCGGGTGGTAAAGCAAAGTGTTGCTCAATGGTA
GGTAGGGCAATGTGTCGGTGCCTGTTGGGGCGCGTGGGTGTTGGC
Right flanking sequence: Indices 70499 -- 70998
GTACTGGCTTAGTTGTTGGTGATGGCTGTGGGTCGCTTCCTATCGATTCTTCGTTGGGAGTAGTT
GTGCGACGGATCAACAGTGATCTGATGTAATACAATACGTAGAGATCTCGGGGTGCAAATTCTTT
GTTGCCAACTGTCCGAAAGCGACTTTCCCTAGTACGTAATATTGCCCTTGTGGCCTATTGTTCGC
TCAAGTGGCGAATGATTGCCATTAGCCGACGACATGGCGAATTACTGTCTGAAGAATGGCAGCAT
TAGTCAAAACAGCGAGTCCTAAATCTAAAATTGGAGCCCACCGGTTGAACGTATGACGTCCCGCC
TTTGCATACTCCTGGGTGGGGTACTGAAACGATCTCTCTCACTCAAAGCGTGTATTGTGGTGGTT
CCTTAAGGGGCTACTGGTTAGAAATGTGGTTACTGATGAGAAATAGGGTAACTGGTTGGAAATAG
GTTTACTGGTTTAAAATACGGGATACTATAACCTTACTGAAAATT
Found at i:70922 original size:19 final size:19
Alignment explanation
Indices: 70900--70964 Score: 69
Period size: 19 Copynumber: 3.4 Consensus size: 19
70890 CTTAAGGGGC
70900 TACTGGTTAGAAAT-GTGGT
1 TACTGGTTAGAAATAG-GGT
* *
70919 TACTGATGAGAAATAGGGT
1 TACTGGTTAGAAATAGGGT
* * *
70938 AACTGGTTGGAAATAGGTT
1 TACTGGTTAGAAATAGGGT
70957 TACTGGTT
1 TACTGGTT
70965 TAAAATACGG
Statistics
Matches: 37, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
19 36 0.97
20 1 0.03
ACGTcount: A:0.29, C:0.06, G:0.31, T:0.34
Consensus pattern (19 bp):
TACTGGTTAGAAATAGGGT
Left flanking sequence: Indices 70400 -- 70899
CTCAATGGTAGGTAGGGCAATGTGTCGGTGCCTGTTGGGGCGCGTGGGTGTTGGCTGGTGCTGGT
GGTTGGTGCTGGTGGTTGGCGTTGGTAGTTGGTGGTACTGGCTTAGTTGTTGGTGATGGCTGTGG
GTCGCTTCCTATCGATTCTTCGTTGGGAGTAGTTGTGCGACGGATCAACAGTGATCTGATGTAAT
ACAATACGTAGAGATCTCGGGGTGCAAATTCTTTGTTGCCAACTGTCCGAAAGCGACTTTCCCTA
GTACGTAATATTGCCCTTGTGGCCTATTGTTCGCTCAAGTGGCGAATGATTGCCATTAGCCGACG
ACATGGCGAATTACTGTCTGAAGAATGGCAGCATTAGTCAAAACAGCGAGTCCTAAATCTAAAAT
TGGAGCCCACCGGTTGAACGTATGACGTCCCGCCTTTGCATACTCCTGGGTGGGGTACTGAAACG
ATCTCTCTCACTCAAAGCGTGTATTGTGGTGGTTCCTTAAGGGGC
Right flanking sequence: Indices 70965 -- 71464
TAAAATACGGGATACTATAACCTTACTGAAAATTCGAGTACGAGACACATAGTGTCCGCCCGTGG
TGGCAGTGACGTGCGCCCCATGACCCACTTTGATTTTAAAGTTGTATTACAGAAGAAGGTATCAC
AATTGACGGAAGTGTCTGATGTCCAGGGCACATAACCAGAATGGGGGCGGCTCGTGAATAGTTGT
CCTTGGGAGGGCTGCTTATTTAACACCGGCATCCCCGGAGATTTACCTTAATCGGAAAGAAAGAA
GCGCAGTGCTGACAGGTTGCTGAAGTTGTTGGGTTTCTTTGCAGGGGGGTCTTGATTGATATTTC
CCTAAAACGAGAGGATGAGAGCAAAAGCCTCTTGGATGTAGGTCATTGGTGGTTGGTGGCTGGTG
GCTGGTGACGTACAGCGGCCCTGACTTGGAGGTGGTGAATGAGTGTCAGTGGGGGACAATTGATA
CGCTAGTCTTACGTGCATTGCTAGGCGAGTGTCTGCATTCGCGTA
Found at i:70970 original size:19 final size:19
Alignment explanation
Indices: 70929--70971 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 19
70919 TACTGATGAG
*
70929 AAATAGGGTAACTGGTTGG
1 AAATAGGGTAACTGGTTGA
* * *
70948 AAATAGGTTTACTGGTTTA
1 AAATAGGGTAACTGGTTGA
70967 AAATA
1 AAATA
70972 CGGGATACTA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.37, C:0.05, G:0.26, T:0.33
Consensus pattern (19 bp):
AAATAGGGTAACTGGTTGA
Left flanking sequence: Indices 70429 -- 70928
GCCTGTTGGGGCGCGTGGGTGTTGGCTGGTGCTGGTGGTTGGTGCTGGTGGTTGGCGTTGGTAGT
TGGTGGTACTGGCTTAGTTGTTGGTGATGGCTGTGGGTCGCTTCCTATCGATTCTTCGTTGGGAG
TAGTTGTGCGACGGATCAACAGTGATCTGATGTAATACAATACGTAGAGATCTCGGGGTGCAAAT
TCTTTGTTGCCAACTGTCCGAAAGCGACTTTCCCTAGTACGTAATATTGCCCTTGTGGCCTATTG
TTCGCTCAAGTGGCGAATGATTGCCATTAGCCGACGACATGGCGAATTACTGTCTGAAGAATGGC
AGCATTAGTCAAAACAGCGAGTCCTAAATCTAAAATTGGAGCCCACCGGTTGAACGTATGACGTC
CCGCCTTTGCATACTCCTGGGTGGGGTACTGAAACGATCTCTCTCACTCAAAGCGTGTATTGTGG
TGGTTCCTTAAGGGGCTACTGGTTAGAAATGTGGTTACTGATGAG
Right flanking sequence: Indices 70972 -- 71471
CGGGATACTATAACCTTACTGAAAATTCGAGTACGAGACACATAGTGTCCGCCCGTGGTGGCAGT
GACGTGCGCCCCATGACCCACTTTGATTTTAAAGTTGTATTACAGAAGAAGGTATCACAATTGAC
GGAAGTGTCTGATGTCCAGGGCACATAACCAGAATGGGGGCGGCTCGTGAATAGTTGTCCTTGGG
AGGGCTGCTTATTTAACACCGGCATCCCCGGAGATTTACCTTAATCGGAAAGAAAGAAGCGCAGT
GCTGACAGGTTGCTGAAGTTGTTGGGTTTCTTTGCAGGGGGGTCTTGATTGATATTTCCCTAAAA
CGAGAGGATGAGAGCAAAAGCCTCTTGGATGTAGGTCATTGGTGGTTGGTGGCTGGTGGCTGGTG
ACGTACAGCGGCCCTGACTTGGAGGTGGTGAATGAGTGTCAGTGGGGGACAATTGATACGCTAGT
CTTACGTGCATTGCTAGGCGAGTGTCTGCATTCGCGTATAGCCAT
Done.