Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: C7981
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 49522
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.23
Found at i:369 original size:19 final size:19
Alignment explanation
Indices: 333--395 Score: 94
Period size: 17 Copynumber: 3.3 Consensus size: 19
323 AATGTCACTG
333 CCATTGGCTCTTTCTTTGCCT
1 CCATTGGCTC--TCTTTGCCT
354 CCATTGGCTCTCTTTGCCT
1 CCATTGGCTCTCTTTGCCT
373 CCATT-GC-CTCTTTGCCT
1 CCATTGGCTCTCTTTGCCT
390 CCATTG
1 CCATTG
396 CTTCTGCCTC
Statistics
Matches: 41, Mismatches: 0, Indels: 5
0.89 0.00 0.11
Matches are distributed among these distances:
17 15 0.37
18 2 0.05
19 14 0.34
21 10 0.24
ACGTcount: A:0.06, C:0.37, G:0.14, T:0.43
Consensus pattern (19 bp):
CCATTGGCTCTCTTTGCCT
Left flanking sequence: Indices 1 -- 332
TATGTGCACGACAAAGTCGGAATTTACTCAGGACAAGTCGGAATTCAACCTGTGTCATCTGCATT
TATTTAGTTCCGAACAAAACCGAAACGACTGTACGTCATCGGGGGCGCCTAAGCCGATCTTGGCG
TTGCGGTGGCGGCCACGGGATAACTGAGGGGGTGGGTGTCTTGGCCGTGGTCCGTTTGGCTGGGT
GGTGTCCTGGCTGCCCCTGGCTCGCTTTCCTTCCTCGATTTTTCAGCCTCGTCGCTCCCTGTTTC
AGGTCTGCCCAGCCAGAGCCACCCTCTTGGCGTGTTCTACGACGCCGTCAGTCACTATTACCAAT
GTCACTG
Right flanking sequence: Indices 396 -- 895
CTTCTGCCTCTGCCTCTTTGCCACTCCCTCTCTCTTCCTCTCCTCCTTTGTGTCCTTGCGCCTGA
GTCACCTCCACTACGTCATCCCGCTTCTTTCCTTCCCCTCCCTCTCCTCCGCGTCACTCCCTCCG
CCTCGTCCTCCTCCTCCTCCCACACCGCGCCTCCTCCTCCCACCACCGCTCTCCACCCCACTCGC
CAACCTCGGCTCGTCGCCACCCCTCGGCAGCCCACTTGCCTAATGTGCAACCGATCGACTAATCC
GGAAGGCACCCCCTGTGCATGGGACACGCCGTGCAGCCGATGCAGCCCTGGGCCTTTAGCCCGAC
CTACGTCGGCTCCGATCGCACTGAGCCCTGGCCCCGGTGCGTCCTGGCGCCACCGAGGCACCGCA
AAGGCGCGCGGCCACTCTGCCGATCCACCTCTGCACCTCACTTCCACCCTCGCCACCCTAGACCA
CCTCTCGTCCCTCTCCTCCAACGTAAACCACCACCTCCTCTCTCC
Found at i:381 original size:9 final size:9
Alignment explanation
Indices: 348--396 Score: 55
Period size: 9 Copynumber: 5.4 Consensus size: 9
338 GGCTCTTTCT
348 TTGCCTCCA
1 TTGCCTCCA
* *
357 TTGGCTCTCT
1 TTGCCTC-CA
367 TTGCCTCCA
1 TTGCCTCCA
*
376 TTGCCT-CT
1 TTGCCTCCA
384 TTGCCTCCA
1 TTGCCTCCA
393 TTGC
1 TTGC
397 TTCTGCCTCT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
8 7 0.22
9 18 0.56
10 7 0.22
ACGTcount: A:0.06, C:0.39, G:0.14, T:0.41
Consensus pattern (9 bp):
TTGCCTCCA
Left flanking sequence: Indices 1 -- 347
TATGTGCACGACAAAGTCGGAATTTACTCAGGACAAGTCGGAATTCAACCTGTGTCATCTGCATT
TATTTAGTTCCGAACAAAACCGAAACGACTGTACGTCATCGGGGGCGCCTAAGCCGATCTTGGCG
TTGCGGTGGCGGCCACGGGATAACTGAGGGGGTGGGTGTCTTGGCCGTGGTCCGTTTGGCTGGGT
GGTGTCCTGGCTGCCCCTGGCTCGCTTTCCTTCCTCGATTTTTCAGCCTCGTCGCTCCCTGTTTC
AGGTCTGCCCAGCCAGAGCCACCCTCTTGGCGTGTTCTACGACGCCGTCAGTCACTATTACCAAT
GTCACTGCCATTGGCTCTTTCT
Right flanking sequence: Indices 397 -- 896
TTCTGCCTCTGCCTCTTTGCCACTCCCTCTCTCTTCCTCTCCTCCTTTGTGTCCTTGCGCCTGAG
TCACCTCCACTACGTCATCCCGCTTCTTTCCTTCCCCTCCCTCTCCTCCGCGTCACTCCCTCCGC
CTCGTCCTCCTCCTCCTCCCACACCGCGCCTCCTCCTCCCACCACCGCTCTCCACCCCACTCGCC
AACCTCGGCTCGTCGCCACCCCTCGGCAGCCCACTTGCCTAATGTGCAACCGATCGACTAATCCG
GAAGGCACCCCCTGTGCATGGGACACGCCGTGCAGCCGATGCAGCCCTGGGCCTTTAGCCCGACC
TACGTCGGCTCCGATCGCACTGAGCCCTGGCCCCGGTGCGTCCTGGCGCCACCGAGGCACCGCAA
AGGCGCGCGGCCACTCTGCCGATCCACCTCTGCACCTCACTTCCACCCTCGCCACCCTAGACCAC
CTCTCGTCCCTCTCCTCCAACGTAAACCACCACCTCCTCTCTCCC
Found at i:560 original size:20 final size:21
Alignment explanation
Indices: 535--574 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
525 GCCTCGTCCT
535 CCTCCTCCTCCCA-CACCGCG
1 CCTCCTCCTCCCACCACCGCG
555 CCTCCTCCTCCCACCACCGC
1 CCTCCTCCTCCCACCACCGC
575 TCTCCACCCC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.10, C:0.68, G:0.07, T:0.15
Consensus pattern (21 bp):
CCTCCTCCTCCCACCACCGCG
Left flanking sequence: Indices 35 -- 534
AAGTCGGAATTCAACCTGTGTCATCTGCATTTATTTAGTTCCGAACAAAACCGAAACGACTGTAC
GTCATCGGGGGCGCCTAAGCCGATCTTGGCGTTGCGGTGGCGGCCACGGGATAACTGAGGGGGTG
GGTGTCTTGGCCGTGGTCCGTTTGGCTGGGTGGTGTCCTGGCTGCCCCTGGCTCGCTTTCCTTCC
TCGATTTTTCAGCCTCGTCGCTCCCTGTTTCAGGTCTGCCCAGCCAGAGCCACCCTCTTGGCGTG
TTCTACGACGCCGTCAGTCACTATTACCAATGTCACTGCCATTGGCTCTTTCTTTGCCTCCATTG
GCTCTCTTTGCCTCCATTGCCTCTTTGCCTCCATTGCTTCTGCCTCTGCCTCTTTGCCACTCCCT
CTCTCTTCCTCTCCTCCTTTGTGTCCTTGCGCCTGAGTCACCTCCACTACGTCATCCCGCTTCTT
TCCTTCCCCTCCCTCTCCTCCGCGTCACTCCCTCCGCCTCGTCCT
Right flanking sequence: Indices 575 -- 1074
TCTCCACCCCACTCGCCAACCTCGGCTCGTCGCCACCCCTCGGCAGCCCACTTGCCTAATGTGCA
ACCGATCGACTAATCCGGAAGGCACCCCCTGTGCATGGGACACGCCGTGCAGCCGATGCAGCCCT
GGGCCTTTAGCCCGACCTACGTCGGCTCCGATCGCACTGAGCCCTGGCCCCGGTGCGTCCTGGCG
CCACCGAGGCACCGCAAAGGCGCGCGGCCACTCTGCCGATCCACCTCTGCACCTCACTTCCACCC
TCGCCACCCTAGACCACCTCTCGTCCCTCTCCTCCAACGTAAACCACCACCTCCTCTCTCCCTCA
CCTCCCTCTACCACTTCTCTCCCTCACCTCCCTCCCCACTCCTCCACCACTCCTCTCACCTCCAC
GCCTCCCCTCGGTTGCACTCGCCGCCTCGCGCCCTGCACACACCCGGCCCATTCCCCCACAGCGA
CTTTTATCGGTGCATGGTGCGTTCGCTCCACACATCAAGCAAAGA
Found at i:1890 original size:12 final size:12
Alignment explanation
Indices: 1875--1910 Score: 72
Period size: 12 Copynumber: 3.0 Consensus size: 12
1865 GATGACGAGT
1875 GTGAGTGGAGGG
1 GTGAGTGGAGGG
1887 GTGAGTGGAGGG
1 GTGAGTGGAGGG
1899 GTGAGTGGAGGG
1 GTGAGTGGAGGG
1911 AGTGGAGGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.17, C:0.00, G:0.67, T:0.17
Consensus pattern (12 bp):
GTGAGTGGAGGG
Left flanking sequence: Indices 1375 -- 1874
ACCGGCTCGTGTTCCTCGTGCTCTACGACGGGATCGCCCTGGAGGACGCGGAGTTGCTCGCGGTC
ACCGGGCACATCTTGGACCGCGGGCTCGGCTACTGTGTGGACCACCAGCTCGAGCCCGAGGCCAC
CATCGAGGTGCTCAAGGCGATGTACCTGTTGTACCACAAGTACCCCCAGCACACCTCGGCGGAGG
TGTTGCACACGGTGGTGCTGCACTTCACCGCGGTGCGGGCGCGGCGCATGCCCCCGCTGAAGCTC
GAGCAGCACTTGGTGAACGTGATTACGATTATAGTGACGGGGGACCCGGAGTCGCGCCGGCGCGA
CATTGGGTACGTGTGCCGCCACTGCCCCGAGTTTGGCGACGCGTTGATGCAGTATCTCCACCACC
AGTTGATGGAGTACACGTGCCGGTTGGGGGTGGAGTGTGGTGAGTGCGACTCGGTGGCGAACTCG
CGGAATAATTCTGAGGGTGGTGCCACGGCCCCGGTGATGACGAGT
Right flanking sequence: Indices 1911 -- 2410
AGTGGAGGGAGTGGAGTGAACGGAGGAAGTACGAGTGCGGGAGTGAGTGCGACTAGTGTTGGTGC
GACCAATGCTGGTGCGACTGGTGCTGGTGCGACCGCTGGTGCGACCGGTGCCGGTGCGACCGGCC
CCAAGCCTGTGACTGGCGCCATCGACTTGTCCAACTTTGAGTTGGACGTGGAGGGGGCGCTCAGG
GGTAGTGTCAGCGACGTGAGCGACAACAGTGCCGTGAACGGCGGTCCTTTGAAAGTCAGCGAGGC
TGGAAAGACCGTTGAGAATGCTGGTGTGATCAATGCTGGTGTGGCTCCTGAGACCCAGAACGGTG
CCCAGACCGGTGCTCAGACCGGTGCTCAGACTGTCCAACATACTGGCCAGAATGGCCTGAATGGC
CAGAGTACTCATACTCCCTCGCAGAACGGTAACCCAGCTGGACCCTTGCCCGAGACTGTTCCGGT
CTCCACTGGCTCTACCCCCGGTGCACCCACTGCTAATGCACCCAC
Found at i:1915 original size:9 final size:9
Alignment explanation
Indices: 1877--1926 Score: 54
Period size: 9 Copynumber: 5.9 Consensus size: 9
1867 TGACGAGTGT
1877 GAGTGGAGG
1 GAGTGGAGG
1886 G-GT-GAGTG
1 GAGTGGAG-G
*
1894 GAG-GG-GT
1 GAGTGGAGG
1901 GAGTGGAGG
1 GAGTGGAGG
1910 GAGTGGAGG
1 GAGTGGAGG
1919 GAGTGGAG
1 GAGTGGAG
1927 TGAACGGAGG
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
7 6 0.18
8 7 0.21
9 21 0.62
ACGTcount: A:0.20, C:0.00, G:0.66, T:0.14
Consensus pattern (9 bp):
GAGTGGAGG
Left flanking sequence: Indices 1377 -- 1876
CGGCTCGTGTTCCTCGTGCTCTACGACGGGATCGCCCTGGAGGACGCGGAGTTGCTCGCGGTCAC
CGGGCACATCTTGGACCGCGGGCTCGGCTACTGTGTGGACCACCAGCTCGAGCCCGAGGCCACCA
TCGAGGTGCTCAAGGCGATGTACCTGTTGTACCACAAGTACCCCCAGCACACCTCGGCGGAGGTG
TTGCACACGGTGGTGCTGCACTTCACCGCGGTGCGGGCGCGGCGCATGCCCCCGCTGAAGCTCGA
GCAGCACTTGGTGAACGTGATTACGATTATAGTGACGGGGGACCCGGAGTCGCGCCGGCGCGACA
TTGGGTACGTGTGCCGCCACTGCCCCGAGTTTGGCGACGCGTTGATGCAGTATCTCCACCACCAG
TTGATGGAGTACACGTGCCGGTTGGGGGTGGAGTGTGGTGAGTGCGACTCGGTGGCGAACTCGCG
GAATAATTCTGAGGGTGGTGCCACGGCCCCGGTGATGACGAGTGT
Right flanking sequence: Indices 1927 -- 2426
TGAACGGAGGAAGTACGAGTGCGGGAGTGAGTGCGACTAGTGTTGGTGCGACCAATGCTGGTGCG
ACTGGTGCTGGTGCGACCGCTGGTGCGACCGGTGCCGGTGCGACCGGCCCCAAGCCTGTGACTGG
CGCCATCGACTTGTCCAACTTTGAGTTGGACGTGGAGGGGGCGCTCAGGGGTAGTGTCAGCGACG
TGAGCGACAACAGTGCCGTGAACGGCGGTCCTTTGAAAGTCAGCGAGGCTGGAAAGACCGTTGAG
AATGCTGGTGTGATCAATGCTGGTGTGGCTCCTGAGACCCAGAACGGTGCCCAGACCGGTGCTCA
GACCGGTGCTCAGACTGTCCAACATACTGGCCAGAATGGCCTGAATGGCCAGAGTACTCATACTC
CCTCGCAGAACGGTAACCCAGCTGGACCCTTGCCCGAGACTGTTCCGGTCTCCACTGGCTCTACC
CCCGGTGCACCCACTGCTAATGCACCCACTGCCCGTGCACCCTCT
Found at i:1921 original size:4 final size:5
Alignment explanation
Indices: 1871--1928 Score: 51
Period size: 5 Copynumber: 13.0 Consensus size: 5
1861 CGGTGATGAC
1871 GAGTG TGAGTG GAG-G G-GT- GAGTG GAG-G G-GT- GAGTG GAG-G GAGTG
1 GAGTG -GAGTG GAGTG GAGTG GAGTG GAGTG GAGTG GAGTG GAGTG GAGTG
1915 GAG-G GAGTG GAGTG
1 GAGTG GAGTG GAGTG
1929 AACGGAGGAA
Statistics
Matches: 44, Mismatches: 0, Indels: 17
0.72 0.00 0.28
Matches are distributed among these distances:
3 4 0.09
4 16 0.36
5 19 0.43
6 5 0.11
ACGTcount: A:0.19, C:0.00, G:0.64, T:0.17
Consensus pattern (5 bp):
GAGTG
Left flanking sequence: Indices 1371 -- 1870
GGCTACCGGCTCGTGTTCCTCGTGCTCTACGACGGGATCGCCCTGGAGGACGCGGAGTTGCTCGC
GGTCACCGGGCACATCTTGGACCGCGGGCTCGGCTACTGTGTGGACCACCAGCTCGAGCCCGAGG
CCACCATCGAGGTGCTCAAGGCGATGTACCTGTTGTACCACAAGTACCCCCAGCACACCTCGGCG
GAGGTGTTGCACACGGTGGTGCTGCACTTCACCGCGGTGCGGGCGCGGCGCATGCCCCCGCTGAA
GCTCGAGCAGCACTTGGTGAACGTGATTACGATTATAGTGACGGGGGACCCGGAGTCGCGCCGGC
GCGACATTGGGTACGTGTGCCGCCACTGCCCCGAGTTTGGCGACGCGTTGATGCAGTATCTCCAC
CACCAGTTGATGGAGTACACGTGCCGGTTGGGGGTGGAGTGTGGTGAGTGCGACTCGGTGGCGAA
CTCGCGGAATAATTCTGAGGGTGGTGCCACGGCCCCGGTGATGAC
Right flanking sequence: Indices 1929 -- 2428
AACGGAGGAAGTACGAGTGCGGGAGTGAGTGCGACTAGTGTTGGTGCGACCAATGCTGGTGCGAC
TGGTGCTGGTGCGACCGCTGGTGCGACCGGTGCCGGTGCGACCGGCCCCAAGCCTGTGACTGGCG
CCATCGACTTGTCCAACTTTGAGTTGGACGTGGAGGGGGCGCTCAGGGGTAGTGTCAGCGACGTG
AGCGACAACAGTGCCGTGAACGGCGGTCCTTTGAAAGTCAGCGAGGCTGGAAAGACCGTTGAGAA
TGCTGGTGTGATCAATGCTGGTGTGGCTCCTGAGACCCAGAACGGTGCCCAGACCGGTGCTCAGA
CCGGTGCTCAGACTGTCCAACATACTGGCCAGAATGGCCTGAATGGCCAGAGTACTCATACTCCC
TCGCAGAACGGTAACCCAGCTGGACCCTTGCCCGAGACTGTTCCGGTCTCCACTGGCTCTACCCC
CGGTGCACCCACTGCTAATGCACCCACTGCCCGTGCACCCTCTGC
Found at i:1977 original size:15 final size:15
Alignment explanation
Indices: 1957--2008 Score: 68
Period size: 15 Copynumber: 3.5 Consensus size: 15
1947 GCGGGAGTGA
*
1957 GTGCGACTAGTGTTG
1 GTGCGACTAGTGCTG
* *
1972 GTGCGACCAATGCTG
1 GTGCGACTAGTGCTG
*
1987 GTGCGACTGGTGCTG
1 GTGCGACTAGTGCTG
2002 GTGCGAC
1 GTGCGAC
2009 CGCTGGTGCG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 31 1.00
ACGTcount: A:0.13, C:0.21, G:0.40, T:0.25
Consensus pattern (15 bp):
GTGCGACTAGTGCTG
Left flanking sequence: Indices 1457 -- 1956
CCGCGGGCTCGGCTACTGTGTGGACCACCAGCTCGAGCCCGAGGCCACCATCGAGGTGCTCAAGG
CGATGTACCTGTTGTACCACAAGTACCCCCAGCACACCTCGGCGGAGGTGTTGCACACGGTGGTG
CTGCACTTCACCGCGGTGCGGGCGCGGCGCATGCCCCCGCTGAAGCTCGAGCAGCACTTGGTGAA
CGTGATTACGATTATAGTGACGGGGGACCCGGAGTCGCGCCGGCGCGACATTGGGTACGTGTGCC
GCCACTGCCCCGAGTTTGGCGACGCGTTGATGCAGTATCTCCACCACCAGTTGATGGAGTACACG
TGCCGGTTGGGGGTGGAGTGTGGTGAGTGCGACTCGGTGGCGAACTCGCGGAATAATTCTGAGGG
TGGTGCCACGGCCCCGGTGATGACGAGTGTGAGTGGAGGGGTGAGTGGAGGGGTGAGTGGAGGGA
GTGGAGGGAGTGGAGTGAACGGAGGAAGTACGAGTGCGGGAGTGA
Right flanking sequence: Indices 2009 -- 2508
CGCTGGTGCGACCGGTGCCGGTGCGACCGGCCCCAAGCCTGTGACTGGCGCCATCGACTTGTCCA
ACTTTGAGTTGGACGTGGAGGGGGCGCTCAGGGGTAGTGTCAGCGACGTGAGCGACAACAGTGCC
GTGAACGGCGGTCCTTTGAAAGTCAGCGAGGCTGGAAAGACCGTTGAGAATGCTGGTGTGATCAA
TGCTGGTGTGGCTCCTGAGACCCAGAACGGTGCCCAGACCGGTGCTCAGACCGGTGCTCAGACTG
TCCAACATACTGGCCAGAATGGCCTGAATGGCCAGAGTACTCATACTCCCTCGCAGAACGGTAAC
CCAGCTGGACCCTTGCCCGAGACTGTTCCGGTCTCCACTGGCTCTACCCCCGGTGCACCCACTGC
TAATGCACCCACTGCCCGTGCACCCTCTGCCTCGGGCCCTACACCCACTGCCAGTGCACCCAGTG
TCCCTGCACCCACCACTTCCGCCACCACCTCCGCCACCACCTCTG
Found at i:1991 original size:30 final size:27
Alignment explanation
Indices: 1957--2037 Score: 90
Period size: 27 Copynumber: 2.9 Consensus size: 27
1947 GCGGGAGTGA
*
1957 GTGCGACTAGTGTTGGTGCGACCAATGCTG
1 GTGCGACTAGTGCTGGTGCGACC---GCTG
*
1987 GTGCGACTGGTGCTGGTGCGACCGCTG
1 GTGCGACTAGTGCTGGTGCGACCGCTG
** *
2014 GTGCGACCGGTGCCGGTGCGACCG
1 GTGCGACTAGTGCTGGTGCGACCG
2038 GCCCCAAGCC
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
27 26 0.55
30 21 0.45
ACGTcount: A:0.11, C:0.26, G:0.42, T:0.21
Consensus pattern (27 bp):
GTGCGACTAGTGCTGGTGCGACCGCTG
Left flanking sequence: Indices 1457 -- 1956
CCGCGGGCTCGGCTACTGTGTGGACCACCAGCTCGAGCCCGAGGCCACCATCGAGGTGCTCAAGG
CGATGTACCTGTTGTACCACAAGTACCCCCAGCACACCTCGGCGGAGGTGTTGCACACGGTGGTG
CTGCACTTCACCGCGGTGCGGGCGCGGCGCATGCCCCCGCTGAAGCTCGAGCAGCACTTGGTGAA
CGTGATTACGATTATAGTGACGGGGGACCCGGAGTCGCGCCGGCGCGACATTGGGTACGTGTGCC
GCCACTGCCCCGAGTTTGGCGACGCGTTGATGCAGTATCTCCACCACCAGTTGATGGAGTACACG
TGCCGGTTGGGGGTGGAGTGTGGTGAGTGCGACTCGGTGGCGAACTCGCGGAATAATTCTGAGGG
TGGTGCCACGGCCCCGGTGATGACGAGTGTGAGTGGAGGGGTGAGTGGAGGGGTGAGTGGAGGGA
GTGGAGGGAGTGGAGTGAACGGAGGAAGTACGAGTGCGGGAGTGA
Right flanking sequence: Indices 2038 -- 2537
GCCCCAAGCCTGTGACTGGCGCCATCGACTTGTCCAACTTTGAGTTGGACGTGGAGGGGGCGCTC
AGGGGTAGTGTCAGCGACGTGAGCGACAACAGTGCCGTGAACGGCGGTCCTTTGAAAGTCAGCGA
GGCTGGAAAGACCGTTGAGAATGCTGGTGTGATCAATGCTGGTGTGGCTCCTGAGACCCAGAACG
GTGCCCAGACCGGTGCTCAGACCGGTGCTCAGACTGTCCAACATACTGGCCAGAATGGCCTGAAT
GGCCAGAGTACTCATACTCCCTCGCAGAACGGTAACCCAGCTGGACCCTTGCCCGAGACTGTTCC
GGTCTCCACTGGCTCTACCCCCGGTGCACCCACTGCTAATGCACCCACTGCCCGTGCACCCTCTG
CCTCGGGCCCTACACCCACTGCCAGTGCACCCAGTGTCCCTGCACCCACCACTTCCGCCACCACC
TCCGCCACCACCTCTGCCACCACCCCCTCCGATCCCCCGCCTCCT
Found at i:2015 original size:12 final size:12
Alignment explanation
Indices: 1998--2022 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1988 TGCGACTGGT
1998 GCTGGTGCGACC
1 GCTGGTGCGACC
2010 GCTGGTGCGACC
1 GCTGGTGCGACC
2022 G
1 G
2023 GTGCCGGTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.32, G:0.44, T:0.16
Consensus pattern (12 bp):
GCTGGTGCGACC
Left flanking sequence: Indices 1498 -- 1997
AGGCCACCATCGAGGTGCTCAAGGCGATGTACCTGTTGTACCACAAGTACCCCCAGCACACCTCG
GCGGAGGTGTTGCACACGGTGGTGCTGCACTTCACCGCGGTGCGGGCGCGGCGCATGCCCCCGCT
GAAGCTCGAGCAGCACTTGGTGAACGTGATTACGATTATAGTGACGGGGGACCCGGAGTCGCGCC
GGCGCGACATTGGGTACGTGTGCCGCCACTGCCCCGAGTTTGGCGACGCGTTGATGCAGTATCTC
CACCACCAGTTGATGGAGTACACGTGCCGGTTGGGGGTGGAGTGTGGTGAGTGCGACTCGGTGGC
GAACTCGCGGAATAATTCTGAGGGTGGTGCCACGGCCCCGGTGATGACGAGTGTGAGTGGAGGGG
TGAGTGGAGGGGTGAGTGGAGGGAGTGGAGGGAGTGGAGTGAACGGAGGAAGTACGAGTGCGGGA
GTGAGTGCGACTAGTGTTGGTGCGACCAATGCTGGTGCGACTGGT
Right flanking sequence: Indices 2023 -- 2522
GTGCCGGTGCGACCGGCCCCAAGCCTGTGACTGGCGCCATCGACTTGTCCAACTTTGAGTTGGAC
GTGGAGGGGGCGCTCAGGGGTAGTGTCAGCGACGTGAGCGACAACAGTGCCGTGAACGGCGGTCC
TTTGAAAGTCAGCGAGGCTGGAAAGACCGTTGAGAATGCTGGTGTGATCAATGCTGGTGTGGCTC
CTGAGACCCAGAACGGTGCCCAGACCGGTGCTCAGACCGGTGCTCAGACTGTCCAACATACTGGC
CAGAATGGCCTGAATGGCCAGAGTACTCATACTCCCTCGCAGAACGGTAACCCAGCTGGACCCTT
GCCCGAGACTGTTCCGGTCTCCACTGGCTCTACCCCCGGTGCACCCACTGCTAATGCACCCACTG
CCCGTGCACCCTCTGCCTCGGGCCCTACACCCACTGCCAGTGCACCCAGTGTCCCTGCACCCACC
ACTTCCGCCACCACCTCCGCCACCACCTCTGCCACCACCCCCTCC
Found at i:2025 original size:27 final size:27
Alignment explanation
Indices: 1983--2037 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
1973 TGCGACCAAT
* *
1983 GCTGGTGCGACTGGTGCTGGTGCGACC
1 GCTGGTGCGACCGGTGCCGGTGCGACC
2010 GCTGGTGCGACCGGTGCCGGTGCGACC
1 GCTGGTGCGACCGGTGCCGGTGCGACC
2037 G
1 G
2038 GCCCCAAGCC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.07, C:0.29, G:0.45, T:0.18
Consensus pattern (27 bp):
GCTGGTGCGACCGGTGCCGGTGCGACC
Left flanking sequence: Indices 1483 -- 1982
ACCAGCTCGAGCCCGAGGCCACCATCGAGGTGCTCAAGGCGATGTACCTGTTGTACCACAAGTAC
CCCCAGCACACCTCGGCGGAGGTGTTGCACACGGTGGTGCTGCACTTCACCGCGGTGCGGGCGCG
GCGCATGCCCCCGCTGAAGCTCGAGCAGCACTTGGTGAACGTGATTACGATTATAGTGACGGGGG
ACCCGGAGTCGCGCCGGCGCGACATTGGGTACGTGTGCCGCCACTGCCCCGAGTTTGGCGACGCG
TTGATGCAGTATCTCCACCACCAGTTGATGGAGTACACGTGCCGGTTGGGGGTGGAGTGTGGTGA
GTGCGACTCGGTGGCGAACTCGCGGAATAATTCTGAGGGTGGTGCCACGGCCCCGGTGATGACGA
GTGTGAGTGGAGGGGTGAGTGGAGGGGTGAGTGGAGGGAGTGGAGGGAGTGGAGTGAACGGAGGA
AGTACGAGTGCGGGAGTGAGTGCGACTAGTGTTGGTGCGACCAAT
Right flanking sequence: Indices 2038 -- 2537
GCCCCAAGCCTGTGACTGGCGCCATCGACTTGTCCAACTTTGAGTTGGACGTGGAGGGGGCGCTC
AGGGGTAGTGTCAGCGACGTGAGCGACAACAGTGCCGTGAACGGCGGTCCTTTGAAAGTCAGCGA
GGCTGGAAAGACCGTTGAGAATGCTGGTGTGATCAATGCTGGTGTGGCTCCTGAGACCCAGAACG
GTGCCCAGACCGGTGCTCAGACCGGTGCTCAGACTGTCCAACATACTGGCCAGAATGGCCTGAAT
GGCCAGAGTACTCATACTCCCTCGCAGAACGGTAACCCAGCTGGACCCTTGCCCGAGACTGTTCC
GGTCTCCACTGGCTCTACCCCCGGTGCACCCACTGCTAATGCACCCACTGCCCGTGCACCCTCTG
CCTCGGGCCCTACACCCACTGCCAGTGCACCCAGTGTCCCTGCACCCACCACTTCCGCCACCACC
TCCGCCACCACCTCTGCCACCACCCCCTCCGATCCCCCGCCTCCT
Found at i:2033 original size:15 final size:15
Alignment explanation
Indices: 1970--2038 Score: 81
Period size: 15 Copynumber: 4.8 Consensus size: 15
1960 CGACTAGTGT
**
1970 TGGTGCGACCAATGC
1 TGGTGCGACCGGTGC
*
1985 TGGTGCGACTGGTGC
1 TGGTGCGACCGGTGC
2000 TGGTGCGACC---GC
1 TGGTGCGACCGGTGC
2012 TGGTGCGACCGGTGC
1 TGGTGCGACCGGTGC
*
2027 CGGTGCGACCGG
1 TGGTGCGACCGG
2039 CCCCAAGCCT
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
12 12 0.26
15 34 0.74
ACGTcount: A:0.10, C:0.28, G:0.43, T:0.19
Consensus pattern (15 bp):
TGGTGCGACCGGTGC
Left flanking sequence: Indices 1470 -- 1969
TACTGTGTGGACCACCAGCTCGAGCCCGAGGCCACCATCGAGGTGCTCAAGGCGATGTACCTGTT
GTACCACAAGTACCCCCAGCACACCTCGGCGGAGGTGTTGCACACGGTGGTGCTGCACTTCACCG
CGGTGCGGGCGCGGCGCATGCCCCCGCTGAAGCTCGAGCAGCACTTGGTGAACGTGATTACGATT
ATAGTGACGGGGGACCCGGAGTCGCGCCGGCGCGACATTGGGTACGTGTGCCGCCACTGCCCCGA
GTTTGGCGACGCGTTGATGCAGTATCTCCACCACCAGTTGATGGAGTACACGTGCCGGTTGGGGG
TGGAGTGTGGTGAGTGCGACTCGGTGGCGAACTCGCGGAATAATTCTGAGGGTGGTGCCACGGCC
CCGGTGATGACGAGTGTGAGTGGAGGGGTGAGTGGAGGGGTGAGTGGAGGGAGTGGAGGGAGTGG
AGTGAACGGAGGAAGTACGAGTGCGGGAGTGAGTGCGACTAGTGT
Right flanking sequence: Indices 2039 -- 2538
CCCCAAGCCTGTGACTGGCGCCATCGACTTGTCCAACTTTGAGTTGGACGTGGAGGGGGCGCTCA
GGGGTAGTGTCAGCGACGTGAGCGACAACAGTGCCGTGAACGGCGGTCCTTTGAAAGTCAGCGAG
GCTGGAAAGACCGTTGAGAATGCTGGTGTGATCAATGCTGGTGTGGCTCCTGAGACCCAGAACGG
TGCCCAGACCGGTGCTCAGACCGGTGCTCAGACTGTCCAACATACTGGCCAGAATGGCCTGAATG
GCCAGAGTACTCATACTCCCTCGCAGAACGGTAACCCAGCTGGACCCTTGCCCGAGACTGTTCCG
GTCTCCACTGGCTCTACCCCCGGTGCACCCACTGCTAATGCACCCACTGCCCGTGCACCCTCTGC
CTCGGGCCCTACACCCACTGCCAGTGCACCCAGTGTCCCTGCACCCACCACTTCCGCCACCACCT
CCGCCACCACCTCTGCCACCACCCCCTCCGATCCCCCGCCTCCTC
Found at i:2241 original size:12 final size:12
Alignment explanation
Indices: 2224--2266 Score: 59
Period size: 12 Copynumber: 3.6 Consensus size: 12
2214 GCTCCTGAGA
*
2224 CCCAGAACGGTG
1 CCCAGACCGGTG
2236 CCCAGACCGGTG
1 CCCAGACCGGTG
*
2248 CTCAGACCGGTG
1 CCCAGACCGGTG
*
2260 CTCAGAC
1 CCCAGAC
2267 TGTCCAACAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.21, C:0.37, G:0.30, T:0.12
Consensus pattern (12 bp):
CCCAGACCGGTG
Left flanking sequence: Indices 1724 -- 2223
CCCCGAGTTTGGCGACGCGTTGATGCAGTATCTCCACCACCAGTTGATGGAGTACACGTGCCGGT
TGGGGGTGGAGTGTGGTGAGTGCGACTCGGTGGCGAACTCGCGGAATAATTCTGAGGGTGGTGCC
ACGGCCCCGGTGATGACGAGTGTGAGTGGAGGGGTGAGTGGAGGGGTGAGTGGAGGGAGTGGAGG
GAGTGGAGTGAACGGAGGAAGTACGAGTGCGGGAGTGAGTGCGACTAGTGTTGGTGCGACCAATG
CTGGTGCGACTGGTGCTGGTGCGACCGCTGGTGCGACCGGTGCCGGTGCGACCGGCCCCAAGCCT
GTGACTGGCGCCATCGACTTGTCCAACTTTGAGTTGGACGTGGAGGGGGCGCTCAGGGGTAGTGT
CAGCGACGTGAGCGACAACAGTGCCGTGAACGGCGGTCCTTTGAAAGTCAGCGAGGCTGGAAAGA
CCGTTGAGAATGCTGGTGTGATCAATGCTGGTGTGGCTCCTGAGA
Right flanking sequence: Indices 2267 -- 2766
TGTCCAACATACTGGCCAGAATGGCCTGAATGGCCAGAGTACTCATACTCCCTCGCAGAACGGTA
ACCCAGCTGGACCCTTGCCCGAGACTGTTCCGGTCTCCACTGGCTCTACCCCCGGTGCACCCACT
GCTAATGCACCCACTGCCCGTGCACCCTCTGCCTCGGGCCCTACACCCACTGCCAGTGCACCCAG
TGTCCCTGCACCCACCACTTCCGCCACCACCTCCGCCACCACCTCTGCCACCACCCCCTCCGATC
CCCCGCCTCCTCCGTCGGTGCTCCCCTCCAGTGCCTCCCTCCCGTCGCACCCGGACTCGGGCCGC
CCGCTGGTGACTCTGACCTCGAGCTCGCCCCACACCACCACCGCCAACGACGTGCTGGGCCTCTT
TGTCCTCATCACCTTCATGGCCAAGCTGATGCGCCACGAGGCTGACAACGTGCTCATCTCCATCT
TCAAGCGCGACATGCTCCCCTCGCGGGTCCAGGTGCCTCTAGTCT
Found at i:2420 original size:15 final size:15
Alignment explanation
Indices: 2386--2429 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
2376 TCTACCCCCG
*
2386 GTGCACCCACTGCTA
1 GTGCACCCACTGCCA
* *
2401 ATGCACCCACTGCCC
1 GTGCACCCACTGCCA
*
2416 GTGCACCCTCTGCC
1 GTGCACCCACTGCC
2430 TCGGGCCCTA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.16, C:0.48, G:0.18, T:0.18
Consensus pattern (15 bp):
GTGCACCCACTGCCA
Left flanking sequence: Indices 1886 -- 2385
GGTGAGTGGAGGGGTGAGTGGAGGGAGTGGAGGGAGTGGAGTGAACGGAGGAAGTACGAGTGCGG
GAGTGAGTGCGACTAGTGTTGGTGCGACCAATGCTGGTGCGACTGGTGCTGGTGCGACCGCTGGT
GCGACCGGTGCCGGTGCGACCGGCCCCAAGCCTGTGACTGGCGCCATCGACTTGTCCAACTTTGA
GTTGGACGTGGAGGGGGCGCTCAGGGGTAGTGTCAGCGACGTGAGCGACAACAGTGCCGTGAACG
GCGGTCCTTTGAAAGTCAGCGAGGCTGGAAAGACCGTTGAGAATGCTGGTGTGATCAATGCTGGT
GTGGCTCCTGAGACCCAGAACGGTGCCCAGACCGGTGCTCAGACCGGTGCTCAGACTGTCCAACA
TACTGGCCAGAATGGCCTGAATGGCCAGAGTACTCATACTCCCTCGCAGAACGGTAACCCAGCTG
GACCCTTGCCCGAGACTGTTCCGGTCTCCACTGGCTCTACCCCCG
Right flanking sequence: Indices 2430 -- 2929
TCGGGCCCTACACCCACTGCCAGTGCACCCAGTGTCCCTGCACCCACCACTTCCGCCACCACCTC
CGCCACCACCTCTGCCACCACCCCCTCCGATCCCCCGCCTCCTCCGTCGGTGCTCCCCTCCAGTG
CCTCCCTCCCGTCGCACCCGGACTCGGGCCGCCCGCTGGTGACTCTGACCTCGAGCTCGCCCCAC
ACCACCACCGCCAACGACGTGCTGGGCCTCTTTGTCCTCATCACCTTCATGGCCAAGCTGATGCG
CCACGAGGCTGACAACGTGCTCATCTCCATCTTCAAGCGCGACATGCTCCCCTCGCGGGTCCAGG
TGCCTCTAGTCTACGAGAAGCTGCTTGCGGTGATCTGTCTGCCGCTGTCGCAGGCCCAGTTCACG
CCCGGCGACGAAACCAAGCTCCGCCAGATCGTCATGGACTGCTACTTTGAGCTCTGCTACGACCC
CAGCCCCAAGAAACGGTACACCCATTTCTTGGAGGTGGTTTCGTA
Found at i:2490 original size:12 final size:12
Alignment explanation
Indices: 2473--2516 Score: 70
Period size: 12 Copynumber: 3.7 Consensus size: 12
2463 GTCCCTGCAC
*
2473 CCACCACTTCCG
1 CCACCACCTCCG
2485 CCACCACCTCCG
1 CCACCACCTCCG
*
2497 CCACCACCTCTG
1 CCACCACCTCCG
2509 CCACCACC
1 CCACCACC
2517 CCCTCCGATC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.18, C:0.64, G:0.07, T:0.11
Consensus pattern (12 bp):
CCACCACCTCCG
Left flanking sequence: Indices 1973 -- 2472
TGCGACCAATGCTGGTGCGACTGGTGCTGGTGCGACCGCTGGTGCGACCGGTGCCGGTGCGACCG
GCCCCAAGCCTGTGACTGGCGCCATCGACTTGTCCAACTTTGAGTTGGACGTGGAGGGGGCGCTC
AGGGGTAGTGTCAGCGACGTGAGCGACAACAGTGCCGTGAACGGCGGTCCTTTGAAAGTCAGCGA
GGCTGGAAAGACCGTTGAGAATGCTGGTGTGATCAATGCTGGTGTGGCTCCTGAGACCCAGAACG
GTGCCCAGACCGGTGCTCAGACCGGTGCTCAGACTGTCCAACATACTGGCCAGAATGGCCTGAAT
GGCCAGAGTACTCATACTCCCTCGCAGAACGGTAACCCAGCTGGACCCTTGCCCGAGACTGTTCC
GGTCTCCACTGGCTCTACCCCCGGTGCACCCACTGCTAATGCACCCACTGCCCGTGCACCCTCTG
CCTCGGGCCCTACACCCACTGCCAGTGCACCCAGTGTCCCTGCAC
Right flanking sequence: Indices 2517 -- 3016
CCCTCCGATCCCCCGCCTCCTCCGTCGGTGCTCCCCTCCAGTGCCTCCCTCCCGTCGCACCCGGA
CTCGGGCCGCCCGCTGGTGACTCTGACCTCGAGCTCGCCCCACACCACCACCGCCAACGACGTGC
TGGGCCTCTTTGTCCTCATCACCTTCATGGCCAAGCTGATGCGCCACGAGGCTGACAACGTGCTC
ATCTCCATCTTCAAGCGCGACATGCTCCCCTCGCGGGTCCAGGTGCCTCTAGTCTACGAGAAGCT
GCTTGCGGTGATCTGTCTGCCGCTGTCGCAGGCCCAGTTCACGCCCGGCGACGAAACCAAGCTCC
GCCAGATCGTCATGGACTGCTACTTTGAGCTCTGCTACGACCCCAGCCCCAAGAAACGGTACACC
CATTTCTTGGAGGTGGTTTCGTACGTCCACGCCAAGGGGTACATCGATGCCAACCACTTGGAGAT
GCCGAGCTCGATCGACGTTTCCAAGTACCTCAAGCCACGCTACTT
Found at i:3283 original size:19 final size:19
Alignment explanation
Indices: 3259--3298 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
3249 GAAGAGCTCA
*
3259 AGGAAGAGAGCTAGGAGCG
1 AGGAAGAGAGCTAGCAGCG
3278 AGGAAGAGAGCTAGCAGCG
1 AGGAAGAGAGCTAGCAGCG
3297 AG
1 AG
3299 TGAGCAGCGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.12, G:0.45, T:0.05
Consensus pattern (19 bp):
AGGAAGAGAGCTAGCAGCG
Left flanking sequence: Indices 2759 -- 3258
TCTAGTCTACGAGAAGCTGCTTGCGGTGATCTGTCTGCCGCTGTCGCAGGCCCAGTTCACGCCCG
GCGACGAAACCAAGCTCCGCCAGATCGTCATGGACTGCTACTTTGAGCTCTGCTACGACCCCAGC
CCCAAGAAACGGTACACCCATTTCTTGGAGGTGGTTTCGTACGTCCACGCCAAGGGGTACATCGA
TGCCAACCACTTGGAGATGCCGAGCTCGATCGACGTTTCCAAGTACCTCAAGCCACGCTACTTCG
AGGTGGCTCCGCTGGTGGCGCCCCAGCTGGAGGCGTACACCCTCAACCAGCTGTTCAAGCTGATC
TTGACGGCTGCGGCGGGCGTGGAGCAGAAGAAGCCCGAGATGCTGGAGCAGGAAAAGGAGCGAGA
GGCGGAGAAGTTGTTCCACGTATTTGAGCGCATGGAGCAGTTGGGCACGTTCCTGGGGTTCAAGA
ACCCTGTGAGGCAGTGGCAGGAACAGGGCCGGTTTGAAGAGCTCA
Right flanking sequence: Indices 3299 -- 3798
TGAGCAGCGAGAGAACTCGCCTTATTTATTTTTATATTTGCCGGACAAAAGTAATACCATTAATA
CGACACATAATAGGAAGATAGGAAGGGTGGATTTTTGGTGGTTGAGAATAGTTGGTATTGAGCAG
AATTGGTGGTTGAGATTTGGTTGTTGAGCTGAAACGGTGGTTGAGCTGTATTAGTATTTGAATTG
GCTTTGCTCAATTGGGTTGGTTGGTGGGTCAGGGTTGGTCTGAACCATTTTCTTTGGCCTGGAAA
AACAATCCCATTACTACCAGCACATTGTGAACTAGAAGGGGTTCGTACGTGAGTTGAATGGGCTT
GAGTGAGGTTTACCAGCTCAACTGGCTTATTGAACAGTAGGCTCTTTTGTGGTGAATTATTACTT
CGTTGCGTCCTTGAAATAGAAATCAGAACCGTACAAATAACTCGAACAGTTGCTTAATTTCCAGT
GTTGAAGCCAATTCTACCAACAGCGTCCACTATATCCCACCCACT
Found at i:4498 original size:10 final size:10
Alignment explanation
Indices: 4475--4541 Score: 86
Period size: 10 Copynumber: 6.9 Consensus size: 10
4465 CATCCCATCC
4475 CACTCACTC-
1 CACTCACTCA
*
4484 C-CTCCCTCA
1 CACTCACTCA
4493 CACTCCACTCA
1 CACT-CACTCA
*
4504 C-CTCACACA
1 CACTCACTCA
4513 CACTCACTCA
1 CACTCACTCA
4523 CACTCACTCA
1 CACTCACTCA
4533 CACTCACTC
1 CACTCACTC
4542 CCACCCTATG
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
8 6 0.12
9 8 0.16
10 30 0.60
11 6 0.12
ACGTcount: A:0.25, C:0.55, G:0.00, T:0.19
Consensus pattern (10 bp):
CACTCACTCA
Left flanking sequence: Indices 3975 -- 4474
TCAGAGGGAAGGCACCGAGTACGTAGGTGGTTGGAGAAGGTACCGTATGGATGCACCTTAAGCTT
CAACATATGCCAGGAAAAACAGAAAAATAAACGAACGAGAAGAGAAGAGAAAAAAAAGATAGGGA
GCAGGAATTTTTTCAATAGCTTCAACTGGGCTATTTCTTTTCTTTTTTGCGTTCATAGTGTTTCA
CGTCTTCACCTACGTGGGCTGAGAAGTTGGCATCGGTTTCCACCTACACATCAATTAGTACACCG
GCTCTTTCTACCCCACCACGGTTCTGCTGTAGTCACCTCTGGGTACACGCTGACACTCTCCCGGC
TCTACCTCATCCAATACCACCCTCTTACATTCACACCATACAACCCAAAATTCACCATCTCACCT
AAACCACTCCATAAGCCCTAAACCTCATCCCACCTCTCCACACTCTACCCACGTGATCCACTCAT
CTCTACACCTTCTACACCTACAGTCTTTCACCCTCCATCCCATCC
Right flanking sequence: Indices 4542 -- 5041
CCACCCTATGTCCCACCCACACCTGACGCGCACCACGCACCGCGCTCCACGCACACCACCCTTTA
CACACTCCCACCACCCTCCACCACATCCACCTCCACACACACACACACACACACCATGGCTTCCA
AGGCGTGGACGGTGTTCCTCTTGGACGACGTCCTGGCAGCCGACTACCTCTGGGAGCAGTGCGCC
GCCCAGCTCCTCACCAAGCGCAAGCTCGACCGCCTCGCGCTCGTGCTCGCGGGCGACACCCTCTT
TGTCGACGGCCCCTTCACCTACGACACCCTCCGCCAGTGGCACGCCGCGGTGAGCACCGCCCCGC
CCCCCGCGCCGGGGCTCGCCCCCGGGTTGCGCGCGGCGCGCGCCAACTTCGACCTCAAGCCCCAC
CTCAAGTTTGGCCGCGAGCTCGTGGTGATCTCGAGCGACGCCCGGTGGGACCCCGCGGCGCTCGA
CTACGCCGACAGCTTTGGCGGGGTCGGGGTCACCGTGGTCGGGGT
Found at i:4541 original size:14 final size:14
Alignment explanation
Indices: 4479--4533 Score: 65
Period size: 14 Copynumber: 3.8 Consensus size: 14
4469 CCATCCCACT
* *
4479 CACTCCCTCCCTCA
1 CACTCACTCACTCA
4493 CACTCCACTCACCTCA
1 CACT-CACTCA-CTCA
*
4509 CACACACTCACTCA
1 CACTCACTCACTCA
4523 CACTCACTCAC
1 CACTCACTCAC
4534 ACTCACTCCC
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
14 18 0.51
15 10 0.29
16 7 0.20
ACGTcount: A:0.25, C:0.56, G:0.00, T:0.18
Consensus pattern (14 bp):
CACTCACTCACTCA
Left flanking sequence: Indices 3979 -- 4478
AGGGAAGGCACCGAGTACGTAGGTGGTTGGAGAAGGTACCGTATGGATGCACCTTAAGCTTCAAC
ATATGCCAGGAAAAACAGAAAAATAAACGAACGAGAAGAGAAGAGAAAAAAAAGATAGGGAGCAG
GAATTTTTTCAATAGCTTCAACTGGGCTATTTCTTTTCTTTTTTGCGTTCATAGTGTTTCACGTC
TTCACCTACGTGGGCTGAGAAGTTGGCATCGGTTTCCACCTACACATCAATTAGTACACCGGCTC
TTTCTACCCCACCACGGTTCTGCTGTAGTCACCTCTGGGTACACGCTGACACTCTCCCGGCTCTA
CCTCATCCAATACCACCCTCTTACATTCACACCATACAACCCAAAATTCACCATCTCACCTAAAC
CACTCCATAAGCCCTAAACCTCATCCCACCTCTCCACACTCTACCCACGTGATCCACTCATCTCT
ACACCTTCTACACCTACAGTCTTTCACCCTCCATCCCATCCCACT
Right flanking sequence: Indices 4534 -- 5033
ACTCACTCCCACCCTATGTCCCACCCACACCTGACGCGCACCACGCACCGCGCTCCACGCACACC
ACCCTTTACACACTCCCACCACCCTCCACCACATCCACCTCCACACACACACACACACACACCAT
GGCTTCCAAGGCGTGGACGGTGTTCCTCTTGGACGACGTCCTGGCAGCCGACTACCTCTGGGAGC
AGTGCGCCGCCCAGCTCCTCACCAAGCGCAAGCTCGACCGCCTCGCGCTCGTGCTCGCGGGCGAC
ACCCTCTTTGTCGACGGCCCCTTCACCTACGACACCCTCCGCCAGTGGCACGCCGCGGTGAGCAC
CGCCCCGCCCCCCGCGCCGGGGCTCGCCCCCGGGTTGCGCGCGGCGCGCGCCAACTTCGACCTCA
AGCCCCACCTCAAGTTTGGCCGCGAGCTCGTGGTGATCTCGAGCGACGCCCGGTGGGACCCCGCG
GCGCTCGACTACGCCGACAGCTTTGGCGGGGTCGGGGTCACCGTG
Found at i:6077 original size:12 final size:12
Alignment explanation
Indices: 6062--6103 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
6052 CAGGTAGTGC
*
6062 TTCAGGCCCTGT
1 TTCAGACCCTGT
6074 TTCAGACCCTGT
1 TTCAGACCCTGT
**
6086 TTCAGAATCTGT
1 TTCAGACCCTGT
6098 TTCAGA
1 TTCAGA
6104 ATCTGTGTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.19, C:0.26, G:0.19, T:0.36
Consensus pattern (12 bp):
TTCAGACCCTGT
Left flanking sequence: Indices 5562 -- 6061
CTCACCGGGGAGCTGAACTACGTGGTGCCCCGGGGGCTGGCGCGGGCGTACGCGCTGTTTGTGCG
GGCGCTCCACGCCAGCGGGCGAGTGGCGGTGGTGCGGTACGTGCCCAAGGACGGCGCCCCCGTGG
CCGTGGCGGCGTTGTTCCCCGTCGAGCTCGCCGTGGGGGTGGGGCGGCCCGGGCTCATAATGGTG
AACTTGGCGCTCAAGGAGGACGAAAAGTTTGGCAAGTTCCCCTACCTCACTCCGAAGCGTGGGGG
AGTGAAGGCGGAGGAGGAGGAGGACGAGTTTGACTCGGGGGACGAGGCTGACTCGGGCCCCGTCA
AGTTGGAGGAGGACGTGGTCGACTACTCGCAGCCGGCGCCGGCGCCGCTGAAGTTCCCCCAGGAG
GGGGCGCTCGCGGCGATGGAGGCGTTCATCGAGGGGCACACGCTCAGGGGGGACGGGGAGGAGGG
GGAGGAGGGGGACGGGGAGAGAAGAGGTCGAGTTTCAGGTAGTGC
Right flanking sequence: Indices 6104 -- 6603
ATCTGTGTCAAAACCTTTGTCAGACCCGTATTCGCTACCCGTCATTTCCAACCCGAAACTCGCGC
TTGCGCACACGGAGCCGGTCTCTGTGGAGCACGTCCTGGGCCCCTCGGTGGACTCGCGGCTCACC
GCGGGGCTGCCGCTGTTGTTCAAGTACTCGCACGGGCTCAAGCACATCATCGCCCGGCTGTTGGG
GGCGCCGCTGTTGCTGGAGTTCCTCGCGGAGCCCGACTTCGTGGCCAAGAACCTTGTGGACCCCG
CCAAGTCGAACTTGTTCAATTTGGGGAACATCTTGGCGGTGAACACGCTGAACGAGGGCCCGCTT
GTGAAGCCCGACCTCCGCAAGGCTCAGCGGGCAGCGACGGAGCTCGGGGTGAAGTGGAAGCCTGC
GGTGGAGAAGACGGCGAAGCTGGAGCAGCCGCAGGTGAAGAAGGAGGCGGAGTTTGGTGCGTTCG
TGGATATTGATGCGTTGATTGGGGAATAGCGGTCAGCGTGTTAGT
Found at i:6104 original size:12 final size:12
Alignment explanation
Indices: 6070--6109 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
6060 GCTTCAGGCC
**
6070 CTGTTTCAGACC
1 CTGTTTCAGAAT
6082 CTGTTTCAGAAT
1 CTGTTTCAGAAT
6094 CTGTTTCAGAAT
1 CTGTTTCAGAAT
6106 CTGT
1 CTGT
6110 GTCAAAACCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.20, C:0.23, G:0.17, T:0.40
Consensus pattern (12 bp):
CTGTTTCAGAAT
Left flanking sequence: Indices 5570 -- 6069
GGAGCTGAACTACGTGGTGCCCCGGGGGCTGGCGCGGGCGTACGCGCTGTTTGTGCGGGCGCTCC
ACGCCAGCGGGCGAGTGGCGGTGGTGCGGTACGTGCCCAAGGACGGCGCCCCCGTGGCCGTGGCG
GCGTTGTTCCCCGTCGAGCTCGCCGTGGGGGTGGGGCGGCCCGGGCTCATAATGGTGAACTTGGC
GCTCAAGGAGGACGAAAAGTTTGGCAAGTTCCCCTACCTCACTCCGAAGCGTGGGGGAGTGAAGG
CGGAGGAGGAGGAGGACGAGTTTGACTCGGGGGACGAGGCTGACTCGGGCCCCGTCAAGTTGGAG
GAGGACGTGGTCGACTACTCGCAGCCGGCGCCGGCGCCGCTGAAGTTCCCCCAGGAGGGGGCGCT
CGCGGCGATGGAGGCGTTCATCGAGGGGCACACGCTCAGGGGGGACGGGGAGGAGGGGGAGGAGG
GGGACGGGGAGAGAAGAGGTCGAGTTTCAGGTAGTGCTTCAGGCC
Right flanking sequence: Indices 6110 -- 6609
GTCAAAACCTTTGTCAGACCCGTATTCGCTACCCGTCATTTCCAACCCGAAACTCGCGCTTGCGC
ACACGGAGCCGGTCTCTGTGGAGCACGTCCTGGGCCCCTCGGTGGACTCGCGGCTCACCGCGGGG
CTGCCGCTGTTGTTCAAGTACTCGCACGGGCTCAAGCACATCATCGCCCGGCTGTTGGGGGCGCC
GCTGTTGCTGGAGTTCCTCGCGGAGCCCGACTTCGTGGCCAAGAACCTTGTGGACCCCGCCAAGT
CGAACTTGTTCAATTTGGGGAACATCTTGGCGGTGAACACGCTGAACGAGGGCCCGCTTGTGAAG
CCCGACCTCCGCAAGGCTCAGCGGGCAGCGACGGAGCTCGGGGTGAAGTGGAAGCCTGCGGTGGA
GAAGACGGCGAAGCTGGAGCAGCCGCAGGTGAAGAAGGAGGCGGAGTTTGGTGCGTTCGTGGATA
TTGATGCGTTGATTGGGGAATAGCGGTCAGCGTGTTAGTTAGACT
Found at i:8251 original size:18 final size:17
Alignment explanation
Indices: 8225--8305 Score: 80
Period size: 15 Copynumber: 4.9 Consensus size: 17
8215 CGCGGGAGGA
*
8225 GAGGCGGGGTAGACGGTG
1 GAGGTGGGGTAGA-GGTG
*
8243 GAGGTGGGGTAGAGAATG
1 GAGGTGGGGTAGAG-GTG
*
8261 GAGGTGGGGTAG-TG-G
1 GAGGTGGGGTAGAGGTG
*
8276 GAGGTGGGGTAG-TG-G
1 GAGGTGGGGTAGAGGTG
8291 GAGGTGGGGTAGAGG
1 GAGGTGGGGTAGAGG
8306 GTGGTAGGGA
Statistics
Matches: 56, Mismatches: 5, Indels: 6
0.84 0.07 0.09
Matches are distributed among these distances:
15 28 0.50
16 1 0.02
17 1 0.02
18 26 0.46
ACGTcount: A:0.19, C:0.02, G:0.63, T:0.16
Consensus pattern (17 bp):
GAGGTGGGGTAGAGGTG
Left flanking sequence: Indices 7725 -- 8224
CTTACCCACATTGGGCATACCCACAATGAGGGCCCGGAGACCAAGCGGGGGAGGCGGATCCATCG
CGTCGTACCGCTCGGTGAGCCGGTTGATGATCCGTCTGGTGTCTGCCCGCGACCGGGCGTCGATG
AAGAGGTGGTCGTCCTGGGTCCATGCCTTACTTCGGAGCCCTGAGACCAAGTCTTTTTTCGTGTA
CACCACAAGCCGGTCCTTGTGAGCAAGCACCCGGTCAAAGAGGGCGTTCTTGGTCAGGAGAGGAG
CTCGCAGATCGCGGATCTCGAGCACGATGTCGATCTGGGGGGCTAGGTGGCCCAAGCGGGTGAGG
GCCTTGGCATGGTGGCCCTTGAAGTTGGCGAGCGGGAGGTTATAGTTGGGGAACACCCGTCTGGG
GAGAAAGCTCATGGGTAAAGCCGCACGAAAAGAGAGTGATATAGGAGGTGGAGTACGAAGTGACA
GAAAACGGTCGATGCAGGGATTGGGAGGCGAGAGACGCGGGAGGA
Right flanking sequence: Indices 8306 -- 8805
GTGGTAGGGATTGAACTGGGAGAAGTAGGAAGGGAAAGTATGAGTGGGTATTGTTGGCACAAGAG
AGCAAAGAGGCTACGTAGATGAACGATAGAAGCTGGTAAGGGCACAAGGTCCAGTGAAACCTTAG
TGACTACAAGGATCACAGTTGACTGGAACAGTAGGCCGTTTATGGCACTAATATGCAAATCTCCC
AAATCACCACTCCACCTTTGAATCCACAGACCCCCGTAGACCCTTTTCATCCCACCAGCTACCGC
CTACACCACCCCTCACGCACCCCACCTGCTACCACCTACACCACTTCATCTACCAACTTCCCTCA
CATAGTTACACCCGTGCATCAATTTTCACCATGCCTCTCATCACCTTCACGGGGCTCCCCCTGCT
GGGGAAACTGCGGTACGTAACAGATCTCGTGGCGGCGTTGCAAGCCAAGATCGCCGAAGCCAAAC
AGACCGGGCTGCCCGGGCACAACATGAGCGTAGTCGTCCACAGCG
Found at i:8280 original size:15 final size:15
Alignment explanation
Indices: 8260--8302 Score: 86
Period size: 15 Copynumber: 2.9 Consensus size: 15
8250 GGTAGAGAAT
8260 GGAGGTGGGGTAGTG
1 GGAGGTGGGGTAGTG
8275 GGAGGTGGGGTAGTG
1 GGAGGTGGGGTAGTG
8290 GGAGGTGGGGTAG
1 GGAGGTGGGGTAG
8303 AGGGTGGTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.14, C:0.00, G:0.67, T:0.19
Consensus pattern (15 bp):
GGAGGTGGGGTAGTG
Left flanking sequence: Indices 7760 -- 8259
GGAGACCAAGCGGGGGAGGCGGATCCATCGCGTCGTACCGCTCGGTGAGCCGGTTGATGATCCGT
CTGGTGTCTGCCCGCGACCGGGCGTCGATGAAGAGGTGGTCGTCCTGGGTCCATGCCTTACTTCG
GAGCCCTGAGACCAAGTCTTTTTTCGTGTACACCACAAGCCGGTCCTTGTGAGCAAGCACCCGGT
CAAAGAGGGCGTTCTTGGTCAGGAGAGGAGCTCGCAGATCGCGGATCTCGAGCACGATGTCGATC
TGGGGGGCTAGGTGGCCCAAGCGGGTGAGGGCCTTGGCATGGTGGCCCTTGAAGTTGGCGAGCGG
GAGGTTATAGTTGGGGAACACCCGTCTGGGGAGAAAGCTCATGGGTAAAGCCGCACGAAAAGAGA
GTGATATAGGAGGTGGAGTACGAAGTGACAGAAAACGGTCGATGCAGGGATTGGGAGGCGAGAGA
CGCGGGAGGAGAGGCGGGGTAGACGGTGGAGGTGGGGTAGAGAAT
Right flanking sequence: Indices 8303 -- 8802
AGGGTGGTAGGGATTGAACTGGGAGAAGTAGGAAGGGAAAGTATGAGTGGGTATTGTTGGCACAA
GAGAGCAAAGAGGCTACGTAGATGAACGATAGAAGCTGGTAAGGGCACAAGGTCCAGTGAAACCT
TAGTGACTACAAGGATCACAGTTGACTGGAACAGTAGGCCGTTTATGGCACTAATATGCAAATCT
CCCAAATCACCACTCCACCTTTGAATCCACAGACCCCCGTAGACCCTTTTCATCCCACCAGCTAC
CGCCTACACCACCCCTCACGCACCCCACCTGCTACCACCTACACCACTTCATCTACCAACTTCCC
TCACATAGTTACACCCGTGCATCAATTTTCACCATGCCTCTCATCACCTTCACGGGGCTCCCCCT
GCTGGGGAAACTGCGGTACGTAACAGATCTCGTGGCGGCGTTGCAAGCCAAGATCGCCGAAGCCA
AACAGACCGGGCTGCCCGGGCACAACATGAGCGTAGTCGTCCACA
Found at i:9632 original size:12 final size:12
Alignment explanation
Indices: 9587--9665 Score: 117
Period size: 12 Copynumber: 6.8 Consensus size: 12
9577 TTGGTAAGGT
9587 GCTTTGTGACTG
1 GCTTTGTGACTG
9599 GCTTT-TGACTG
1 GCTTTGTGACTG
9610 GCTTT-TGACTG
1 GCTTTGTGACTG
9621 GCTTTGTGACTG
1 GCTTTGTGACTG
*
9633 GCTTGGTGACTG
1 GCTTTGTGACTG
* *
9645 GCTTTGCGAATG
1 GCTTTGTGACTG
9657 GCTTTGTGA
1 GCTTTGTGA
9666 TCGTACTATA
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
11 22 0.36
12 39 0.64
ACGTcount: A:0.10, C:0.16, G:0.33, T:0.41
Consensus pattern (12 bp):
GCTTTGTGACTG
Left flanking sequence: Indices 9087 -- 9586
TACGAAGAGCCGCGGGGGGACCAGCGGTGGGACCTGCCGTTGTTCTCGGTGGTTGCTCCCGAAGG
GGACGAGTTGCCCGTGGATGAGATGTGGCTGGCGCTCGTGTTGAAGAAGCCCCCCACTCCCAACG
CATCTACAGCGGTCAAGGCCACCGGGTCGATCGACTTCGTGCAGGAGTTGGACCGCCAGACGTCG
ATGGTGGTGACCGAGGTGCTCAAACAGAAGGATTTTGGAGGCCGGGTGGTGATTGGCGACCTCAA
AATGGATTTGCCGGCCCAGGTGCCGCTGGCAGCACAGTTGCAGCGGATCCGACGGACGTACGTGG
GGCTCAATCGCATGCGGACGGTGGACCCTGCCCGGATCACCCCGATGTTTGTCGAATACTTGGAG
AAGTCTTTGAACGAGGGGTGACTGAGGCAGGTTGTTGAGAGTGTATACATAGATAGTATTCACTT
CGGAATACATTGAGCATTATGGAGACGTTGTAGAGTTGGTAAGGT
Right flanking sequence: Indices 9666 -- 10165
TCGTACTATATTTTGCAATTGCTAAACTTCATAAACAGCCCTACCTCCGCAATTGGGTCAAGTGT
GTTGATAGGTGGCAATCGATTCAGGTTTGTTGAAAGGTGGCAATAGTGACAAAGAATTGATGATG
TTGATAGCCCTTTCAATAACCTTTCCTCTACAGTTTTCTCCTTACTCTCCACGGTCTAATCACAT
TACTAGGTAACAACACTAAAATACACCTCACTATAAAACACCACACTATAAAACACCACACTAAA
TTACACCTCACTATAAAACACCTGTCTTGACTCTTCAACCAACCCACCTGCTCCATTATAACATT
CATTACTCTATAAATTCCATTCCCTACCGTTTCCGTGCCTTGGCCCACTTGAACAGCGTGGTGCC
GTCGGCGTGGTACACTTTCTTCTTCGCGCCCTTCTTCATCACCTCGTTGGCGTACTCCATGCGCA
ACTCGACCTCGCGGAGCTCCTTCTCCCGCTCCACCCGCTGCTTCA
Found at i:9901 original size:15 final size:15
Alignment explanation
Indices: 9874--9948 Score: 91
Period size: 15 Copynumber: 5.0 Consensus size: 15
9864 TAGGTAACAA
9874 CACTA-AAATACACCT
1 CACTATAAA-ACACCT
*
9889 CACTATAAAACACCA
1 CACTATAAAACACCT
*
9904 CACTATAAAACACCA
1 CACTATAAAACACCT
*
9919 CACTA-AATTACACCT
1 CACTATAA-AACACCT
9934 CACTATAAAACACCT
1 CACTATAAAACACCT
9949 GTCTTGACTC
Statistics
Matches: 53, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
14 2 0.04
15 46 0.87
16 5 0.09
ACGTcount: A:0.48, C:0.33, G:0.00, T:0.19
Consensus pattern (15 bp):
CACTATAAAACACCT
Left flanking sequence: Indices 9374 -- 9873
GGCAGCACAGTTGCAGCGGATCCGACGGACGTACGTGGGGCTCAATCGCATGCGGACGGTGGACC
CTGCCCGGATCACCCCGATGTTTGTCGAATACTTGGAGAAGTCTTTGAACGAGGGGTGACTGAGG
CAGGTTGTTGAGAGTGTATACATAGATAGTATTCACTTCGGAATACATTGAGCATTATGGAGACG
TTGTAGAGTTGGTAAGGTGCTTTGTGACTGGCTTTTGACTGGCTTTTGACTGGCTTTGTGACTGG
CTTGGTGACTGGCTTTGCGAATGGCTTTGTGATCGTACTATATTTTGCAATTGCTAAACTTCATA
AACAGCCCTACCTCCGCAATTGGGTCAAGTGTGTTGATAGGTGGCAATCGATTCAGGTTTGTTGA
AAGGTGGCAATAGTGACAAAGAATTGATGATGTTGATAGCCCTTTCAATAACCTTTCCTCTACAG
TTTTCTCCTTACTCTCCACGGTCTAATCACATTACTAGGTAACAA
Right flanking sequence: Indices 9949 -- 10448
GTCTTGACTCTTCAACCAACCCACCTGCTCCATTATAACATTCATTACTCTATAAATTCCATTCC
CTACCGTTTCCGTGCCTTGGCCCACTTGAACAGCGTGGTGCCGTCGGCGTGGTACACTTTCTTCT
TCGCGCCCTTCTTCATCACCTCGTTGGCGTACTCCATGCGCAACTCGACCTCGCGGAGCTCCTTC
TCCCGCTCCACCCGCTGCTTCAACTGCTGCAACTGGCGCATCCGGTCCTTCTGCAACTGAGCCCG
GGTGTCTGCGTCAAGCAGCTTGGCAAGCGGCTTGTCCAGCTGCAACTGGTCCATCCGCAACCGGT
TCTCGCGTCGGCTGATCAACGACTCGTCGGTGTTAAAATGCTGGGCGGGGTCGAACTCGCGGGCA
GCGTCGGCCGAGTCCACGAAAACCGTGTGCTTGCCAACGGCCTTCGGGGCCAACGCCTGTTTTTC
GCGGGCAATGCGAGCCTGCTCGTTCGTCCGGACGGTACGGATGTA
Found at i:16010 original size:11 final size:11
Alignment explanation
Indices: 15994--16019 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
15984 GTGGTGGAGA
15994 TGTCGAAGACG
1 TGTCGAAGACG
16005 TGTCGAAGACG
1 TGTCGAAGACG
16016 TGTC
1 TGTC
16020 AGGAGAATGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.23, C:0.19, G:0.35, T:0.23
Consensus pattern (11 bp):
TGTCGAAGACG
Left flanking sequence: Indices 15494 -- 15993
CGACCGAGTCGCTGAGCTCGTTCCAGTCGCCCACCACGCTCTGGACCCGGTCTCCAACCCCGTAT
ATAGCACAGTTATGGGTAGTACACGTGACGTTGACGGAGTTGATGTCTACAGCCGTCACCCGGTC
AAAGTAGCGAGCAAACTGGATGGTGTTGCCGCCTCCCCCACAGCACACATCGATCACAGAGGCTG
GTGCCCGCACGACCTCGTCGTTCGCGGCCGCGGTCTCGGGATACATCACTTCGTACACGAGTCTG
GCAATGAACTTGGCCACCGCCTCTGGGGTCACCGAGTACCAGAGCTCCAGCAGCATGTAGACGCC
CTCATCGAAGCGGGAAAAGAGCAGGTAGCGTTTCTTCCAGTACCGCTTGACGTTTTTGGGGAGCG
TCGTGTGGTTGTGGAGCAACAACTCGTCCTCGGGGGCGACCAGGGACATGGAGATGAGATGGGTT
TGGTTAGGACCACTGGGTTTTGTGTGTGAGAAGTGGTGGTGGAGA
Right flanking sequence: Indices 16020 -- 16519
AGGAGAATGGTTGGGACGAGTGTGAGGGAAAAGAGACAATGTTCAGGGGGTTTAGAGGGGTTGAT
CGGAAGTAGAGTCGTCGCTTGAGGAGTCCTACTGTTTTCGTTCTGTGCAGGATGTATAGACCCGC
TTTAGGAATCAGAAGTTAGAAGTGAAGACAAGAGAGTCGAATTCAAAGTCAATGGCTTAGCTGGT
TCTCTCGGTGTGTTTGTTCTTGTATAAGGGTGTGGAACCTGCCTCTTCCCATGGTAATCGTCCCC
ATCGCATCCCCATCACGGTAGTGAGTCGTCTCAGTGAACCACACATAATATGCATAGTCTCTCCT
CAAACAGCTTAGTCTCTCAAACAGCTTAGTTGCAACTCATCTCACCTAGCTGATCGTCCTGTGTC
TCAACCACCACCGTCCACCACCGTCCACCCTTCATCCCCTCGTCCTTGGTCCATTTCTTTCATTA
ATACATATAATACAACCTAGATTCTGTACACCAACCCGTCGGACA
Found at i:16429 original size:10 final size:10
Alignment explanation
Indices: 16414--16438 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
16404 TGTGTCTCAA
16414 CCACCACCGT
1 CCACCACCGT
16424 CCACCACCGT
1 CCACCACCGT
16434 CCACC
1 CCACC
16439 CTTCATCCCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.64, G:0.08, T:0.08
Consensus pattern (10 bp):
CCACCACCGT
Left flanking sequence: Indices 15914 -- 16413
CGGGGGCGACCAGGGACATGGAGATGAGATGGGTTTGGTTAGGACCACTGGGTTTTGTGTGTGAG
AAGTGGTGGTGGAGATGTCGAAGACGTGTCGAAGACGTGTCAGGAGAATGGTTGGGACGAGTGTG
AGGGAAAAGAGACAATGTTCAGGGGGTTTAGAGGGGTTGATCGGAAGTAGAGTCGTCGCTTGAGG
AGTCCTACTGTTTTCGTTCTGTGCAGGATGTATAGACCCGCTTTAGGAATCAGAAGTTAGAAGTG
AAGACAAGAGAGTCGAATTCAAAGTCAATGGCTTAGCTGGTTCTCTCGGTGTGTTTGTTCTTGTA
TAAGGGTGTGGAACCTGCCTCTTCCCATGGTAATCGTCCCCATCGCATCCCCATCACGGTAGTGA
GTCGTCTCAGTGAACCACACATAATATGCATAGTCTCTCCTCAAACAGCTTAGTCTCTCAAACAG
CTTAGTTGCAACTCATCTCACCTAGCTGATCGTCCTGTGTCTCAA
Right flanking sequence: Indices 16439 -- 16938
CTTCATCCCCTCGTCCTTGGTCCATTTCTTTCATTAATACATATAATACAACCTAGATTCTGTAC
ACCAACCCGTCGGACACCATCACCCGGTTCTCCAGCACCAACTTGTCCATGGCCGCGGCAAACTC
CTCGCGCGAGAACTCCTTCTCGTCGTTGATGGCCTTCTCGAGCTCCAGCTGCGCCACCGCCTGCT
CCAGCAGCAGCTCAAACAACGGCAGGGCAAACAACCGCGAGAGAATCGCGGTGAACTCGGCGTAA
CGTGCGGCCAGAATCAGAGCCACGTCGTCGATGTGCATGTGCTCGACCTCGTCCGCCACCTCGTC
CAGCTCGGGCGTCAGAGGCTCGTCGTCAGACACGTCGATGGGAGCGCGAGCAGCCCGGGTGGCCC
GGGTGGGCCGGGTGGACTGCGAGGCCCGCTCACGGGGCCCAGGCCCGATCAACGGCAGCTCGTCG
TCGCTCTCCTCGGGCTCGTCGACCTCCTCGTCGCGCCGGGCCCGC
Found at i:19081 original size:12 final size:12
Alignment explanation
Indices: 19064--19129 Score: 80
Period size: 12 Copynumber: 5.3 Consensus size: 12
19054 GAATGGTGTG
19064 GTGGAGTGGGGT
1 GTGGAGTGGGGT
19076 GTGGAGTGGGGT
1 GTGGAGTGGGGT
*
19088 GTGGGGTGGGGT
1 GTGGAGTGGGGT
19100 GTGGA-TGTGGGT
1 GTGGAGTG-GGGT
*
19112 GTGGTGGTGTGGGT
1 GTGG-AGTG-GGGT
19126 GTGG
1 GTGG
19130 GTTGGCGTAG
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
11 2 0.04
12 35 0.73
14 11 0.23
ACGTcount: A:0.05, C:0.00, G:0.67, T:0.29
Consensus pattern (12 bp):
GTGGAGTGGGGT
Left flanking sequence: Indices 18564 -- 19063
GGCGTCAATGGTGCGGGGAGTCAACTGGTGGTGGCCAAATGCGCCCCGGAACCCGAGATAGAACT
GCTGGTGGGGGTCAGCCTGGTGCACATTGGGGTCGTAAACGTTCATCACCACGTCCTTGAGCGCA
CGCTCGGCGGGCGGAAGAAACTCTGCGGGCTTGGTAAGAAGCCCCTGCCAGAGCTCACGGTCAAA
CTCCCGGATGTCGTCCATCAGCACCGTCAACCGGACCTGTCGCTTGGCGAGCATCGCCTCGATGT
CGCGGACTAACCCGTCTCCGGCGGGAGGTTGGAGAAAGTCGGTGAAACGACGTGTGCGGTCGCCG
AACAAGGCATCCAAGGGGGCCAGGTTGGGCTGGTCTTCCATGGTTGGGGTGAGGAGGAGTGAGGA
TGAAATTTTGTGCAGGGGAAAAGAGCCGCGCGACGCGTCTCATTTTGCCGGAATAGGAAGGCGAT
GGGTGGGCGAGGTGGTCTGGAGGGAATGGGCGGGGGAATGGTGTG
Right flanking sequence: Indices 19130 -- 19629
GTTGGCGTAGGGCGGGTGGGCGGTGGTTGAGTTTTGGGTGGTGAAAAACTATCCTGTATATACGG
TAGTGGGGGTGTGGGTGCTCTTGGAGGATGCTGGCAGGCAATTTAAGGTGTTTGTCTGGTTAGTT
GGGTGTGTTTTAGTGGTGTGGTATGGTTGGAGGTTGAGAATTCTCACCGGTTGCGGGCTACGTTG
GGACCTATTTGCACTGAGGTGTGTGGAGTGCATATAAGGACCACCACCAGAACCAGTCTGGGTAG
GGAAAGGTCATGGAAAGGTGCTGTAAAGCCTAACTCCGTGGTTTTGGCAATGGACCACTCCCATT
GGTTCTGGCCGGAACTTGACCTGCGAGTAGCGGCATATACAGCGTTGGTGGGTGGGATGATACAT
GAGCATAACTCCGAGGTTCGGTACTCCTGGTACGCCCACAACGTCGTCTCCGCTCCGTTCACCCA
CGGGTAATGTCTGGTTGCCTAGTCCATCCATCGTGAGACTGGTCC
Found at i:19096 original size:24 final size:24
Alignment explanation
Indices: 19064--19129 Score: 89
Period size: 24 Copynumber: 2.7 Consensus size: 24
19054 GAATGGTGTG
*
19064 GTGGAGTGGGGTGTGGA-GTGGGGT
1 GTGGGGTGGGGTGTGGATGT-GGGT
19088 GTGGGGTGGGGTGTGGATGTGGGT
1 GTGGGGTGGGGTGTGGATGTGGGT
19112 GTGGTGGTGTGGGTGTGG
1 GTGG-GGTG-GGGTGTGG
19130 GTTGGCGTAG
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
24 24 0.63
25 6 0.16
26 8 0.21
ACGTcount: A:0.05, C:0.00, G:0.67, T:0.29
Consensus pattern (24 bp):
GTGGGGTGGGGTGTGGATGTGGGT
Left flanking sequence: Indices 18564 -- 19063
GGCGTCAATGGTGCGGGGAGTCAACTGGTGGTGGCCAAATGCGCCCCGGAACCCGAGATAGAACT
GCTGGTGGGGGTCAGCCTGGTGCACATTGGGGTCGTAAACGTTCATCACCACGTCCTTGAGCGCA
CGCTCGGCGGGCGGAAGAAACTCTGCGGGCTTGGTAAGAAGCCCCTGCCAGAGCTCACGGTCAAA
CTCCCGGATGTCGTCCATCAGCACCGTCAACCGGACCTGTCGCTTGGCGAGCATCGCCTCGATGT
CGCGGACTAACCCGTCTCCGGCGGGAGGTTGGAGAAAGTCGGTGAAACGACGTGTGCGGTCGCCG
AACAAGGCATCCAAGGGGGCCAGGTTGGGCTGGTCTTCCATGGTTGGGGTGAGGAGGAGTGAGGA
TGAAATTTTGTGCAGGGGAAAAGAGCCGCGCGACGCGTCTCATTTTGCCGGAATAGGAAGGCGAT
GGGTGGGCGAGGTGGTCTGGAGGGAATGGGCGGGGGAATGGTGTG
Right flanking sequence: Indices 19130 -- 19629
GTTGGCGTAGGGCGGGTGGGCGGTGGTTGAGTTTTGGGTGGTGAAAAACTATCCTGTATATACGG
TAGTGGGGGTGTGGGTGCTCTTGGAGGATGCTGGCAGGCAATTTAAGGTGTTTGTCTGGTTAGTT
GGGTGTGTTTTAGTGGTGTGGTATGGTTGGAGGTTGAGAATTCTCACCGGTTGCGGGCTACGTTG
GGACCTATTTGCACTGAGGTGTGTGGAGTGCATATAAGGACCACCACCAGAACCAGTCTGGGTAG
GGAAAGGTCATGGAAAGGTGCTGTAAAGCCTAACTCCGTGGTTTTGGCAATGGACCACTCCCATT
GGTTCTGGCCGGAACTTGACCTGCGAGTAGCGGCATATACAGCGTTGGTGGGTGGGATGATACAT
GAGCATAACTCCGAGGTTCGGTACTCCTGGTACGCCCACAACGTCGTCTCCGCTCCGTTCACCCA
CGGGTAATGTCTGGTTGCCTAGTCCATCCATCGTGAGACTGGTCC
Found at i:19114 original size:6 final size:6
Alignment explanation
Indices: 19072--19131 Score: 61
Period size: 6 Copynumber: 9.7 Consensus size: 6
19062 TGGTGGAGTG
*
19072 GGGTGT GGAGTG- GGGTGT GGG-GT GGGGTGT GGATGT GGGTGT GGTGGTGT
1 GGGTGT GG-GTGT GGGTGT GGGTGT -GGGTGT GGGTGT GGGTGT -G-GGTGT
19122 GGGTGT GGGT
1 GGGTGT GGGT
19132 TGGCGTAGGG
Statistics
Matches: 46, Mismatches: 2, Indels: 12
0.77 0.03 0.20
Matches are distributed among these distances:
5 5 0.11
6 29 0.63
7 7 0.15
8 5 0.11
ACGTcount: A:0.03, C:0.00, G:0.67, T:0.30
Consensus pattern (6 bp):
GGGTGT
Left flanking sequence: Indices 18572 -- 19071
TGGTGCGGGGAGTCAACTGGTGGTGGCCAAATGCGCCCCGGAACCCGAGATAGAACTGCTGGTGG
GGGTCAGCCTGGTGCACATTGGGGTCGTAAACGTTCATCACCACGTCCTTGAGCGCACGCTCGGC
GGGCGGAAGAAACTCTGCGGGCTTGGTAAGAAGCCCCTGCCAGAGCTCACGGTCAAACTCCCGGA
TGTCGTCCATCAGCACCGTCAACCGGACCTGTCGCTTGGCGAGCATCGCCTCGATGTCGCGGACT
AACCCGTCTCCGGCGGGAGGTTGGAGAAAGTCGGTGAAACGACGTGTGCGGTCGCCGAACAAGGC
ATCCAAGGGGGCCAGGTTGGGCTGGTCTTCCATGGTTGGGGTGAGGAGGAGTGAGGATGAAATTT
TGTGCAGGGGAAAAGAGCCGCGCGACGCGTCTCATTTTGCCGGAATAGGAAGGCGATGGGTGGGC
GAGGTGGTCTGGAGGGAATGGGCGGGGGAATGGTGTGGTGGAGTG
Right flanking sequence: Indices 19132 -- 19631
TGGCGTAGGGCGGGTGGGCGGTGGTTGAGTTTTGGGTGGTGAAAAACTATCCTGTATATACGGTA
GTGGGGGTGTGGGTGCTCTTGGAGGATGCTGGCAGGCAATTTAAGGTGTTTGTCTGGTTAGTTGG
GTGTGTTTTAGTGGTGTGGTATGGTTGGAGGTTGAGAATTCTCACCGGTTGCGGGCTACGTTGGG
ACCTATTTGCACTGAGGTGTGTGGAGTGCATATAAGGACCACCACCAGAACCAGTCTGGGTAGGG
AAAGGTCATGGAAAGGTGCTGTAAAGCCTAACTCCGTGGTTTTGGCAATGGACCACTCCCATTGG
TTCTGGCCGGAACTTGACCTGCGAGTAGCGGCATATACAGCGTTGGTGGGTGGGATGATACATGA
GCATAACTCCGAGGTTCGGTACTCCTGGTACGCCCACAACGTCGTCTCCGCTCCGTTCACCCACG
GGTAATGTCTGGTTGCCTAGTCCATCCATCGTGAGACTGGTCCTT
Found at i:19122 original size:20 final size:19
Alignment explanation
Indices: 19072--19131 Score: 70
Period size: 20 Copynumber: 3.2 Consensus size: 19
19062 TGGTGGAGTG
* *
19072 GGGTGTGGAGTG-GGGTGT
1 GGGTGTGGGGTGTGGATGT
19090 GGG-GTGGGGTGTGGATGT
1 GGGTGTGGGGTGTGGATGT
*
19108 GGGTGTGGTGGTGTGGGTGT
1 GGGTGTGG-GGTGTGGATGT
19128 GGGT
1 GGGT
19132 TGGCGTAGGG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
17 7 0.19
18 11 0.31
19 4 0.11
20 14 0.39
ACGTcount: A:0.03, C:0.00, G:0.67, T:0.30
Consensus pattern (19 bp):
GGGTGTGGGGTGTGGATGT
Left flanking sequence: Indices 18572 -- 19071
TGGTGCGGGGAGTCAACTGGTGGTGGCCAAATGCGCCCCGGAACCCGAGATAGAACTGCTGGTGG
GGGTCAGCCTGGTGCACATTGGGGTCGTAAACGTTCATCACCACGTCCTTGAGCGCACGCTCGGC
GGGCGGAAGAAACTCTGCGGGCTTGGTAAGAAGCCCCTGCCAGAGCTCACGGTCAAACTCCCGGA
TGTCGTCCATCAGCACCGTCAACCGGACCTGTCGCTTGGCGAGCATCGCCTCGATGTCGCGGACT
AACCCGTCTCCGGCGGGAGGTTGGAGAAAGTCGGTGAAACGACGTGTGCGGTCGCCGAACAAGGC
ATCCAAGGGGGCCAGGTTGGGCTGGTCTTCCATGGTTGGGGTGAGGAGGAGTGAGGATGAAATTT
TGTGCAGGGGAAAAGAGCCGCGCGACGCGTCTCATTTTGCCGGAATAGGAAGGCGATGGGTGGGC
GAGGTGGTCTGGAGGGAATGGGCGGGGGAATGGTGTGGTGGAGTG
Right flanking sequence: Indices 19132 -- 19631
TGGCGTAGGGCGGGTGGGCGGTGGTTGAGTTTTGGGTGGTGAAAAACTATCCTGTATATACGGTA
GTGGGGGTGTGGGTGCTCTTGGAGGATGCTGGCAGGCAATTTAAGGTGTTTGTCTGGTTAGTTGG
GTGTGTTTTAGTGGTGTGGTATGGTTGGAGGTTGAGAATTCTCACCGGTTGCGGGCTACGTTGGG
ACCTATTTGCACTGAGGTGTGTGGAGTGCATATAAGGACCACCACCAGAACCAGTCTGGGTAGGG
AAAGGTCATGGAAAGGTGCTGTAAAGCCTAACTCCGTGGTTTTGGCAATGGACCACTCCCATTGG
TTCTGGCCGGAACTTGACCTGCGAGTAGCGGCATATACAGCGTTGGTGGGTGGGATGATACATGA
GCATAACTCCGAGGTTCGGTACTCCTGGTACGCCCACAACGTCGTCTCCGCTCCGTTCACCCACG
GGTAATGTCTGGTTGCCTAGTCCATCCATCGTGAGACTGGTCCTT
Found at i:19634 original size:20 final size:20
Alignment explanation
Indices: 19606--19643 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
19596 TGGTTGCCTA
19606 GTCCATCCATCGTGAGACTG
1 GTCCATCCATCGTGAGACTG
*
19626 GTCCTTCCATCGTGAGAC
1 GTCCATCCATCGTGAGAC
19644 CATTGGGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.32, G:0.24, T:0.26
Consensus pattern (20 bp):
GTCCATCCATCGTGAGACTG
Left flanking sequence: Indices 19106 -- 19605
GTGGGTGTGGTGGTGTGGGTGTGGGTTGGCGTAGGGCGGGTGGGCGGTGGTTGAGTTTTGGGTGG
TGAAAAACTATCCTGTATATACGGTAGTGGGGGTGTGGGTGCTCTTGGAGGATGCTGGCAGGCAA
TTTAAGGTGTTTGTCTGGTTAGTTGGGTGTGTTTTAGTGGTGTGGTATGGTTGGAGGTTGAGAAT
TCTCACCGGTTGCGGGCTACGTTGGGACCTATTTGCACTGAGGTGTGTGGAGTGCATATAAGGAC
CACCACCAGAACCAGTCTGGGTAGGGAAAGGTCATGGAAAGGTGCTGTAAAGCCTAACTCCGTGG
TTTTGGCAATGGACCACTCCCATTGGTTCTGGCCGGAACTTGACCTGCGAGTAGCGGCATATACA
GCGTTGGTGGGTGGGATGATACATGAGCATAACTCCGAGGTTCGGTACTCCTGGTACGCCCACAA
CGTCGTCTCCGCTCCGTTCACCCACGGGTAATGTCTGGTTGCCTA
Right flanking sequence: Indices 19644 -- 20143
CATTGGGTTTATGTTAGCCTCCTTCATCAGGGGCACTCTACGCAACACCGCCGGACCGCTCGGTT
CGGTACGAAAAAGCATGGTCTCCACGTTTCTCCACTTCTTCTCCGAAAATTACATCATAGTCGCC
TCGTCCGCTTAAACTTGTTGGGCCAATCGTATCAGTGCACCCACTCGGTTTACCAAGTTTAGCGA
CAAAAACTTGGGTCCAACAGGACACCGCGCATTTCTGCGGTTGCCATCTCGGGCTACCTGGGGCG
GGCAGCTTGACCTGAGGCGTGTGGGGATTTTTTTTTATCTATATCCAACCAGAGGGTGAAAGCCC
TGTCCACGTTGTCTGACCGGCTTCGAACTCATTGAAGCAAACTCTCATCGATGAGCTATCGAACT
GGTCTAACACCATGCTGACGCTGTTTCGGATGCAAATGTGTTAAGCCCAGAGAAGCCGAATATAC
GAACTGTGATAGGTCCGCCCGATGTAAACATCCGACCTGTGACCG
Found at i:27372 original size:7 final size:7
Alignment explanation
Indices: 27360--27406 Score: 94
Period size: 7 Copynumber: 6.7 Consensus size: 7
27350 AGATAGGCTT
27360 TGGGTAG
1 TGGGTAG
27367 TGGGTAG
1 TGGGTAG
27374 TGGGTAG
1 TGGGTAG
27381 TGGGTAG
1 TGGGTAG
27388 TGGGTAG
1 TGGGTAG
27395 TGGGTAG
1 TGGGTAG
27402 TGGGT
1 TGGGT
27407 GGGCATTCTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 40 1.00
ACGTcount: A:0.13, C:0.00, G:0.57, T:0.30
Consensus pattern (7 bp):
TGGGTAG
Left flanking sequence: Indices 26860 -- 27359
ACCCGACCCAGCGCATCCCCTTTTTGCACAATCCCTACTACGAGCGGCTGGGCAAGACGTTCTCG
CTCCAGCTGTCTACTCCGAAGGGCCAGAGCCTGATGACGCTCCCGCTGCCCAGCCACTTGCGCAA
CCTGTACATCGGGCTCAATCGGCTCAAGGACCTGCGGCTGCGCAACGGGCTGGCGCTGAACTTGG
CCTCCAAGGCTCCTCTGGTGCCCCAACACCGCCATCTGTTCTACGAAATGTTGATTGCGTCAGAT
AACGACGACGACATGGTCCGGATGTGTGTGGACGACGACCTGGACGAGGAGAGCCCACTGCCACC
CGAGCCCACGCTGCCACCACGGGATATTCTGCGCCAGCGGTTCTCCTACTACGGCGATGACTCGA
GCGACAGTGACTACTACGAAGACGAGGACGAGGTCGACGATAACGACGACGACACCCCCCGGAGG
GTTAATATATAGTATATGTGATGAAGAAACGATAGAGATAGGCTT
Right flanking sequence: Indices 27407 -- 27906
GGGCATTCTTTATTGCGACGGGATTGTGATGGCCAGAATAGGCAAGTGGCAGCACGCTCGTCGTG
TGAACATGAAGTGACTTCGCCACCGTTGGATACTATATAAAGATAGTGGTTTGCCACACTTTTAA
GTAATCTCTAGTTATGAAAGTGAATCGGTTGGATTCAATATACATAACGTAAGTACTATTGATGA
CAAAACAGAGTGAATTGTAGTTGTCAAATCAGACTGGAATCTGTCACCTGCAATTGACCCATTGC
TCAAGCTCCTGGCTTAGCCCTTCATCACCACCTTCAGACTGTTCATTTATTCATTACGCATCCTT
GGGGTTAAACTTCAAGCACACCGAGTTGACGCAGTGGCGAGCGTCGGTAGGCGTCTTGTACCCCT
CCCCACGGAAGATGTGGCCCAAGTGGCCGTCGCAGTTCGAGCACCGCATCTCCTCGCGCACCATC
CCGTGGGTGGTGTCCTTGTGCACCGTCAACGACCCCGGGATCTCC
Found at i:28312 original size:8 final size:8
Alignment explanation
Indices: 28299--28325 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
28289 AGCAAGTTAA
28299 GGTTAACT
1 GGTTAACT
28307 GGTTAACT
1 GGTTAACT
28315 GGTTAACT
1 GGTTAACT
28323 GGT
1 GGT
28326 ACAACTCCCG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.22, C:0.11, G:0.30, T:0.37
Consensus pattern (8 bp):
GGTTAACT
Left flanking sequence: Indices 27799 -- 28298
CCACGGAAGATGTGGCCCAAGTGGCCGTCGCAGTTCGAGCACCGCATCTCCTCGCGCACCATCCC
GTGGGTGGTGTCCTTGTGCACCGTCAACGACCCCGGGATCTCCTCGTAGAACGCAGGCCACCCAC
ATCCGCTGTCAAACTTGGCCAGTGCCTTGTAGAGCGGCTGGCCACACCCCACACACTCGTACACC
CCGGTGTTGCTGGGGGGAGTCTTGTTGTACTTGCCGGAGTTGGGGGGCTCGGTGCCCAGCTGGCG
CAACACCACGTACTGCGACGGGGTCAACGAGGCGCGCCACTCGGCGTCTGTCTTCTGTACCATGG
TTCTGATCGGTCTAACTAGTCGTACTGAGCGTAGGGCTGCCCGGCGGATCATTGCTGGAGTGCGC
AACCAACGTTATGTGCCCAACTAGGGAGAACGAGAATGCAATTGGGTGGGAACAGGTGGATGAGG
TAGCCAGTTAAGTGGCGGGTTGCTTACTGCTAAATAGCAAGTTAA
Right flanking sequence: Indices 28326 -- 28825
ACAACTCCCGACCGGAATATTCCCCCGGATCAATCACATGTTGAAAAACCTAATACCCACCGGAA
GAACGGTTGATCCGAACCGTGCCCCCGCAATCCAACCTTTTTAACTCTCTCTCTATCTACCACTC
TACCAATGGGACGAACCATACACCCACATCGAGATTAACAATCTCAACCACCACTTGTCATCTCA
TCTATCATCTCAACTTATTTCAATTTATCCCCTCAACTCTTGTTCTTCCTTACACTCTTTTATTA
CTATATTACAATCACCGGAACCGGTGGGTCAAGATCTTCTCGGCCCCCGCCTCCGTCCACTCGTC
CTTCAGCACCCACAACTGGTGGAACGTGCCCAACAGCGCCAACACCGAGCCCCCGATCCACGCCT
GGTTCACCCGCTCCAGCAGGTTCCCCACCGCGTGCAACCGCACCTTGAGCCCCGGGTGCGCCGCC
AGGATCTCCGCGTAGAGCCGCTCGGTCAACTGGGGCACCAACAGC
Found at i:36039 original size:10 final size:10
Alignment explanation
Indices: 36024--36117 Score: 152
Period size: 10 Copynumber: 9.4 Consensus size: 10
36014 GACGAGAGGA
36024 AGGAGATGGG
1 AGGAGATGGG
36034 AGGAGATGGG
1 AGGAGATGGG
* *
36044 AGGAGTTGAG
1 AGGAGATGGG
36054 AGGAGATGGG
1 AGGAGATGGG
36064 AGGAGATGGG
1 AGGAGATGGG
36074 AGGAGATGGG
1 AGGAGATGGG
36084 AGGAGATGGG
1 AGGAGATGGG
*
36094 AGGAGGTGGG
1 AGGAGATGGG
*
36104 AGGAGATGAG
1 AGGAGATGGG
36114 AGGA
1 AGGA
36118 AAAAAGATGG
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 77 1.00
ACGTcount: A:0.31, C:0.00, G:0.59, T:0.11
Consensus pattern (10 bp):
AGGAGATGGG
Left flanking sequence: Indices 35524 -- 36023
CGCGACGATGACAGGGCGTTGGGAAATGGATACTGTGAAAGACTAGAGACGACAAGTATGCAATA
GCCTGGATCATTCTGAAATAGCAGGTATGTATGTTAAATCGACCTTATAACTTTTCTTCCTTTCC
TCCACTGTGAATACTACATCACGTGAACCGTCCGCGATCGTAACTCTATGGCTCCCCAGGTACTT
AGCGAAGTGGGCGAAGCGCCCTTCACCAAGGAGTTTCTTCTCCTGGTGGCTGAGAAGCCCATTGA
CGAGGTGGTTGCCGCATTGGCCACCAAGCTGAGCAAGTACAAGTACATCCTCGAGGAAACGGTGG
CCAGTGGCGACGCCGACATGACCACCGACTTTGCGGCGGTGTGGGGCCCGAAGGACGGGGCCTTG
GTGCTCGGCATGGGCACGAACCCGCTGGACGGCTCGGCACTGGTCCGCACAGTGTACTTTATTTA
CGTAGGTTAATGGATACGATGGTTATAAGGTGAGGGACGAGAGGA
Right flanking sequence: Indices 36118 -- 36617
AAAAAGATGGGGCAATGGGTAAAGGAGATCGGTTCTAGGGCCTTTGACGGATTAGGCAGTGACTT
GCGCTCTGGTAGGTATCACATTATCTATCTACTATAATACAGATGATCACTCACTGATCATATCC
AACTGGGCTCTCGGTCCCAGAGTCCCGTAAACTGCACTTTTAAGCTCCTCGTACGCTCTCTGTGC
CTTTAACTCGCCATAACACTGCCTATCACCCACGAACTCCTACTTGTCCACCAAATTCGCTAAGC
GCTGGACCCGTTGCGCCACGTCCTTGAGCTCACGCACATCGCCTATCGCTGCCTCCACGTCCTTC
AACACCTGGGCCACCTGCGGGTCGCTGGCCACTGTGGGGTCCACGGGAGCAAGCCAGTTGTCCTC
GGGCACGTGTCCGGTCTGGTCGGTTAACAACCCCAATTCCCGTTCCATCGGCTCCATCTGGCGGC
GTGCCATGCTCTCTAACTTGCGCAACTGGCCCTCTTTCTCCTCGG
Found at i:38507 original size:24 final size:24
Alignment explanation
Indices: 38480--38547 Score: 93
Period size: 24 Copynumber: 2.8 Consensus size: 24
38470 CAGGGCCCTG
38480 GCTAGTGGTAGGAGCCGGGGCTTC
1 GCTAGTGGTAGGAGCCGGGGCTTC
38504 GCTAGTGGTAGGAG-CGGGAGCTTC
1 GCTAGTGGTAGGAGCCGGG-GCTTC
* * *
38528 ACTGGTGGTAGGGGCCGGGG
1 GCTAGTGGTAGGAGCCGGGG
38548 GCTTGGAAGA
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
23 4 0.10
24 31 0.79
25 4 0.10
ACGTcount: A:0.13, C:0.18, G:0.50, T:0.19
Consensus pattern (24 bp):
GCTAGTGGTAGGAGCCGGGGCTTC
Left flanking sequence: Indices 37980 -- 38479
TATAATACAGAGCGTTATAACGGAGGCAAAACGTTCTCCTCGAAGTAGGTTTTACCCGTCTTGCG
GTCGACGCCGACAACGTTGCCGACCTCGTCAGAGTAGGAACAGATGGTGTACTGGCGCCACTTGG
TGTTGCACATCTTGGCGTAGCACCCCACCTTCAGGGTCAGCTTCCACACAAGCGCGGTGAAGTGA
CCGGTGGCCTCGGAGAAGCCAGGGTTGCTGTAGTCGTAGAGGGAGATCTCGTCGTACCACGCAAC
CACCGGGTCCACGCCGCCAACGTAGCCCCCGGCCAAGTTCTCACCGTAGGGACCGTGCAGGTGGA
TCAACTTCATGGTGTTACAGTCGACAATGCCCGACTCAGCGTAATTCTTGGCGTACTCAACAAGC
TTGGGGTCCCATGAGAGATCTTGTACTCCATGGAGACGCCGCTTTTCGTTGTGAGTGTCGAGGGT
GTCCTGTTCGAATTTAGAGAGAGAAGGACCAGGAGCAGGGCCCTG
Right flanking sequence: Indices 38548 -- 39047
GCTTGGAAGAAGCCGGGGGCTGAGTAGGTGTGTCGCTCGTGGGAGCAGGGGCCTCGCTGGTGGTA
GGCAGCGGGCGGAAAGTGATGGTGGTGGCGAACTCCGACGACGGAGCGGCCTCGCTGGGTGGAGG
AGCGGGCTCCGATGTGGGCTGTGTGTTCGCTGCCAGCGGGGTGTATGTGATGGTGGTGCCAAACA
CACTAGAGGACGCTTGGCCTATTGACAGCGGAGCAGCTGGCTGTGTAGAGGGGGTGTCCGTCGCG
GCAGACGGGACATCCACGGGTGACTCCTCGGAGGGTAACGATTGACTGGTGGCCCCCGCCGCAGG
TGGGGTGTCTGACAAAGTAACACTAACTGTGGTGGTCTCGACACTGGTCACGGTGACAACCTCTT
TGGGAGCAGTCACCGTGATCACCGCCTGGGCGTGTACAGCGGCCACTAACGATAAAAGAACGGCA
GAGGATAACATCACTAACGCCAAAACTCAGGGTCCTGTCACCAAT
Found at i:39829 original size:21 final size:21
Alignment explanation
Indices: 39803--39854 Score: 77
Period size: 21 Copynumber: 2.5 Consensus size: 21
39793 AAATAAACAA
* *
39803 ACAAACAAACGAGTGAAGCTG
1 ACAAACAAACGAGTGAACCGG
*
39824 ACAAACAAACTAGTGAACCGG
1 ACAAACAAACGAGTGAACCGG
39845 ACAAACAAAC
1 ACAAACAAAC
39855 CAGACAACCC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.52, C:0.23, G:0.17, T:0.08
Consensus pattern (21 bp):
ACAAACAAACGAGTGAACCGG
Left flanking sequence: Indices 39303 -- 39802
GCAAGCATGCGGTGATGACGTTCGGCAGCGGGGGTGCGTTTGACACCCCTGCGTGGCTTGCAAAA
ACCCTTGTGTTGCTTTTGTGCAAACAAAGTGGCCCGACGTTGGTTGCCAGGTGGACGACGATGGT
ACGAGATGGTAACCACTTGCAACCGATGGACCCGCGGGAGCTGTCACTGCGAGGTGTCACGGCCG
CTGTGCAGCCACAGTGTGCACGAACGGGCCTACGCACGGGCTAGAGCCGAGATAAGCGTGCGGGC
TGTGCGAAGGGGGAAACCGAAAGCGGACAGCCAGCGCCGGAGTGCAGAGTTACGTCGGGCTCTCC
AGCGGCCCCGGAGCCAAGAATTAGGTTGGCTATTGTCTAAACGTCGCTAGCCAGGCGATAGCCCT
CTGCTTTGTTCGCTCTGCATGCACCGCACTGATAACACGGTGCCGTGGACCGCATGGCACATGTG
CCGTAACCGGACCCATAACCGACCTTAACCGGGCCAAATAAACAA
Right flanking sequence: Indices 39855 -- 40354
CAGACAACCCAACCAAACACGTTTAAATTCGTCCCCGCGCGGGGCTCCACCTTCCTTTTTCCTCA
TCTCGCTTCCCTCGTTCCCCCACCCGTGCCCCCAACGCGATTTTTCACTGTGGGGCACCGGTCCA
GGCACACCGACACCCCACGTACACCCGCCACCACCACCGCCTCGGTGAAAAACCACTCCGTAGCC
ACTCTCCCACCCCTAACTAACCCACCCCGCGCCCGCCACCCGCCGGGACCCGCATTTGCGCCCCC
CCGCTGTGCCCCTATCTTGTGTGCAACGTGCGCGCTTTTTGACAGCACTTGATATTTTGATCCAC
CACCACCACCATGTTCAAGGGCTTACGGAAAAAGGCACTGGTGCTAGCGCTAGGCGGCGGCCACG
ACGAGCCCGCGCTGGACAACTACCCCCGGGTGCTCAAACAGGTGCGGGACTTTGAGATTGCCCTC
CAGGCGATGGACTATCTCTTGGACGACCGCACGTCGCAGGGGACA
Found at i:39863 original size:21 final size:21
Alignment explanation
Indices: 39823--39863 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
39813 GAGTGAAGCT
* **
39823 GACAAACAAACTAGTGAACCG
1 GACAAACAAACCAGACAACCG
39844 GACAAACAAACCAGACAACC
1 GACAAACAAACCAGACAACC
39864 CAACCAAACA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.51, C:0.29, G:0.15, T:0.05
Consensus pattern (21 bp):
GACAAACAAACCAGACAACCG
Left flanking sequence: Indices 39323 -- 39822
TTCGGCAGCGGGGGTGCGTTTGACACCCCTGCGTGGCTTGCAAAAACCCTTGTGTTGCTTTTGTG
CAAACAAAGTGGCCCGACGTTGGTTGCCAGGTGGACGACGATGGTACGAGATGGTAACCACTTGC
AACCGATGGACCCGCGGGAGCTGTCACTGCGAGGTGTCACGGCCGCTGTGCAGCCACAGTGTGCA
CGAACGGGCCTACGCACGGGCTAGAGCCGAGATAAGCGTGCGGGCTGTGCGAAGGGGGAAACCGA
AAGCGGACAGCCAGCGCCGGAGTGCAGAGTTACGTCGGGCTCTCCAGCGGCCCCGGAGCCAAGAA
TTAGGTTGGCTATTGTCTAAACGTCGCTAGCCAGGCGATAGCCCTCTGCTTTGTTCGCTCTGCAT
GCACCGCACTGATAACACGGTGCCGTGGACCGCATGGCACATGTGCCGTAACCGGACCCATAACC
GACCTTAACCGGGCCAAATAAACAAACAAACAAACGAGTGAAGCT
Right flanking sequence: Indices 39864 -- 40363
CAACCAAACACGTTTAAATTCGTCCCCGCGCGGGGCTCCACCTTCCTTTTTCCTCATCTCGCTTC
CCTCGTTCCCCCACCCGTGCCCCCAACGCGATTTTTCACTGTGGGGCACCGGTCCAGGCACACCG
ACACCCCACGTACACCCGCCACCACCACCGCCTCGGTGAAAAACCACTCCGTAGCCACTCTCCCA
CCCCTAACTAACCCACCCCGCGCCCGCCACCCGCCGGGACCCGCATTTGCGCCCCCCCGCTGTGC
CCCTATCTTGTGTGCAACGTGCGCGCTTTTTGACAGCACTTGATATTTTGATCCACCACCACCAC
CATGTTCAAGGGCTTACGGAAAAAGGCACTGGTGCTAGCGCTAGGCGGCGGCCACGACGAGCCCG
CGCTGGACAACTACCCCCGGGTGCTCAAACAGGTGCGGGACTTTGAGATTGCCCTCCAGGCGATG
GACTATCTCTTGGACGACCGCACGTCGCAGGGGACAAAGTTGCTC
Found at i:40850 original size:3 final size:3
Alignment explanation
Indices: 40842--40869 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
40832 GGCTACCTGG
40842 TGC TGC TGC TGC TGC TGC TGC TGC TGC T
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC T
40870 TCCCGCCGAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.00, C:0.32, G:0.32, T:0.36
Consensus pattern (3 bp):
TGC
Left flanking sequence: Indices 40342 -- 40841
GTCGCAGGGGACAAAGTTGCTCGAGCAGGAAGCCGCGAAGCACCAGCAGCTGGCGCTGGAACAGC
CGGCGGGGATCTTCCCCCTCGCGCTCGGGGTGATGCAGTTCATCGAGGCCACCCTTGGCTTCGAG
CCCGAGGTGATGGAACGGGCGTTGACCACCCTCCAGGAGGCAGAGGCGGCGCTGGACGCAAACCA
CAAGTACAACTCGCGCCACCGGCTTGCCACGTCGCACATCTACCCCCCCGGGACCGAGTTTGACG
TCACCCACGCCGAGCTGACGCTCTTGTGTGCGCTTTTGATGCTTCTCCGCGAGAACAACGGGATG
GTGGAGGGGCTCAAGGCTCTCTACAAGTTGCGGGCCGCCTACAACAAATTGGACTCCACCTACAA
GAAGATCAAGGCGCTGGAGCCCGCGTTCAACCGCAACTTGGCCAAGCTCAAGGCCCAGGCCGCGG
GCCACCCGCAGAACTTGCTGAATCTGGACCTTCCGGGCTACCTGG
Right flanking sequence: Indices 40870 -- 41369
TCCCGCCGACGTCCAGCTCATGCAGAACCTCGAGGCGGTGTACCAGATGCGCAAGGGCCGTATTG
AGGGCACCAACTTGGGCAACGCCGACTTCTGGGCCCTGCTGCTGCTGGTGGCGCTGCTGCTGGTG
TTGGACCCGCCACGGCTGTTGGCCCAGCTGCTGGACCGCCCGCGGTCGCCGGCCCCGGGCAACGA
GGCGTTTTTGAACCCGCTGGGCGCCCAGCTGTCGGCAGCACTGAACACGGCCCTGTCGGCGGCGC
TGGTGGCTCCGCTGGTGGCGCCGCTGGTGCCTCCCGTGGGCGCGGTCGACGGGTCGGACGACGAC
TTCTCCGACGCCATCTCCCAGGTGTCGTTGCACCCGTCGGACAACCACTTGTACGTGCTGACCAT
CGACGAGTTCATCCACCTGGGGGTGCAGCTCTGCTTTGGCATTTTGCAGGTCGTGCTTTCGCTCA
TTCCCCCCGCCATCGGCAAGGTGTTGCTGATTGTCGGGTTCAAGG
Found at i:41142 original size:12 final size:12
Alignment explanation
Indices: 41127--41163 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
41117 CTGTCGGCGG
41127 CGCTGGTGGCTC
1 CGCTGGTGGCTC
*
41139 CGCTGGTGGCGC
1 CGCTGGTGGCTC
*
41151 CGCTGGTGCCTC
1 CGCTGGTGGCTC
41163 C
1 C
41164 CGTGGGCGCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.00, C:0.38, G:0.41, T:0.22
Consensus pattern (12 bp):
CGCTGGTGGCTC
Left flanking sequence: Indices 40627 -- 41126
GTGTGCGCTTTTGATGCTTCTCCGCGAGAACAACGGGATGGTGGAGGGGCTCAAGGCTCTCTACA
AGTTGCGGGCCGCCTACAACAAATTGGACTCCACCTACAAGAAGATCAAGGCGCTGGAGCCCGCG
TTCAACCGCAACTTGGCCAAGCTCAAGGCCCAGGCCGCGGGCCACCCGCAGAACTTGCTGAATCT
GGACCTTCCGGGCTACCTGGTGCTGCTGCTGCTGCTGCTGCTGCTGCTTCCCGCCGACGTCCAGC
TCATGCAGAACCTCGAGGCGGTGTACCAGATGCGCAAGGGCCGTATTGAGGGCACCAACTTGGGC
AACGCCGACTTCTGGGCCCTGCTGCTGCTGGTGGCGCTGCTGCTGGTGTTGGACCCGCCACGGCT
GTTGGCCCAGCTGCTGGACCGCCCGCGGTCGCCGGCCCCGGGCAACGAGGCGTTTTTGAACCCGC
TGGGCGCCCAGCTGTCGGCAGCACTGAACACGGCCCTGTCGGCGG
Right flanking sequence: Indices 41164 -- 41663
CGTGGGCGCGGTCGACGGGTCGGACGACGACTTCTCCGACGCCATCTCCCAGGTGTCGTTGCACC
CGTCGGACAACCACTTGTACGTGCTGACCATCGACGAGTTCATCCACCTGGGGGTGCAGCTCTGC
TTTGGCATTTTGCAGGTCGTGCTTTCGCTCATTCCCCCCGCCATCGGCAAGGTGTTGCTGATTGT
CGGGTTCAAGGGCGACCGCGACACCGGGCTCCGGATGTTGTGGCGCACCGCCATCACCTCGCGCA
ACATCCACGGCGACTTGGCGTTGTTGTGCTTGCTCGTGTTCTACGACGGGCCGGTGCAGTTTGTC
GACGTCGGGTTCCAGCTTCCCCACCAGACCGACGACAACGTCACCGAGGTGATCTCGTTGGCGGG
CAAGGTGCTGGTGCTGGACGCGGAGCTCGGGCAGATCATGCAGAACCCCGCGCTCTACACACCCC
AGTTGCTCAACAAGGCCCGCAAGTTGTTCCCCCACAACGCGCTCT
Found at i:46952 original size:15 final size:14
Alignment explanation
Indices: 46934--46986 Score: 56
Period size: 15 Copynumber: 3.8 Consensus size: 14
46924 AGGTCGCCGT
*
46934 CCCCGAGGTTGCTG
1 CCCCCAGGTTGCTG
46948 CCCCC--GTTGCTG
1 CCCCCAGGTTGCTG
*
46960 CCCCTCAGGTTGTTG
1 CCCC-CAGGTTGCTG
46975 CCCCCAAGGTTG
1 CCCCC-AGGTTG
46987 ATGTCGACGC
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
12 11 0.33
13 1 0.03
14 5 0.15
15 16 0.48
ACGTcount: A:0.08, C:0.40, G:0.28, T:0.25
Consensus pattern (14 bp):
CCCCCAGGTTGCTG
Left flanking sequence: Indices 46434 -- 46933
TGTGGTTACCACATGAGCGCGTTTTCTTTCTAGAATCTATCGGAATGTGGCTTAATCGGTTTCAT
GTCGTGACTAATGAGATGCGATAACAATTTAAGGTTTTGTCTGATCCATTCGCGATCGTAAATGG
TGTCACAAACGGTCGAATTAGTGTTAGCAACGATGGAAACAAAAACTGGAATACTGAAAACCCGC
ATTACAACAAGTACACCAACTTGCATATACTATTGCCCTCTGGGGGTTACTTTTCGAGATTTGTG
TCGGGCGTCACTTGCATTTGCATATTTATTTTTTTGAGATATGGCTGCAAAATATCCCCTGCCCA
AAGAATTGCCTCGTTTCAAAAAGCTATAAATACGCCTTATCCACACATTTAAACACCACCCAACA
CCACCCTACAACCCAACTATGAAGTTCTCTTCTGCTACGCTCGTTTCTGTTTTGGCCGCCACTGC
CGCCACCCAGGTCATTGAGACCCCCAAGGTCGTCAAGGTCGCCGT
Right flanking sequence: Indices 46987 -- 47486
ATGTCGACGCTGTCATTGCCAGTCTTGAGAGCTTGCAGCGCGCCCTTAACCTCAACCTGGAGCTC
CAGGTTAGAGCTCTTGTTGGTGAGTTCATTGGCAAGCGTGACGCCATCAACCTCAACGAGTTGAT
CGACAAGCTTGTGAAGTTCTTGCCCAACTTGTTCAGCAACCTCTGGAACTCTGCTATCTTCCACA
ACCTCATTACTACTTTGTGGAACCTGGACTGGTTGAAGCGCGCCTTGAACAACGCCATCAACTGG
GTGATCAACTTGATCAACAGCTCGCTCAACGGCCCCGCTAAGCGTTCCGTTCTCGACCCCTTCAT
CAAGCGCCAGTTGGCTGGCCACATGAAGCGCGCCGAGGAGCTCGCTGACCGCTTGCAGAACGACC
CTTCTTTGACTGCCAGAGAATTCGCTCTTTCCTTTAGCGGGATCATCACCGCCATCTTGAACTCG
GGGATCTTCAAGACTGTCTTGAACGCTGGTGTTTCTTGGCTCAAG
Found at i:49211 original size:15 final size:15
Alignment explanation
Indices: 49191--49226 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
49181 TCAGATAGAT
*
49191 TTTCCGAAGGGCACA
1 TTTCCGAAGCGCACA
*
49206 TTTCCGAAGCGCATA
1 TTTCCGAAGCGCACA
49221 TTTCCG
1 TTTCCG
49227 GATAAATCCC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (15 bp):
TTTCCGAAGCGCACA
Left flanking sequence: Indices 48691 -- 49190
GCTAATCTTCGTGACAGTTTCCGTGTGTATTTGGCGCCTTGCCTGTCCAGTTGGAGAAATTCCAG
GCTATATTTGATGAAGTGTCTTTTTGAGGAGGAGGAAAGGGTTCACCGGAGCGCTAGACGGCAAG
ACGGGTGTGGTGAAGATGGACTTAAAGTATAACTTGAAACACAGTAAATTCATCCAACTTCAAGA
CTCCTTGATAGTATCTAAAGCAGTTTGAAACCAATTTTGGTAGAATTTTTGACAGCACTGTGGTC
CATTTGAAACTGGTGCTTGGCATGAAGACTTCGTGGCCAAGTTTGGTTAAGGCGTGCGACTGTTA
ATCGCAAGATCGTGAGTTCAATCCTCACCGAGGTCGACACATCTGTTTTTTGCCTCTAGCCACGA
GAATTTGCGTTTAGTTGAGTCTATAGCTTTCCCTCTCAACAATATTTATAGCGTTTTGCAGTTTT
TCTGTACATTGATGAAAATCTTCGCGCCACTCGGATCAGATAGAT
Right flanking sequence: Indices 49227 -- 49522
GATAAATCCCGCTTTCGGAGCTATTTTCCAGGCATTTGAAGTTAAAATACGTAAATGGCAAGCAG
ATATAAAACTATGAAAAGTCCATTATACAACAACAATTACCAAAAGGGTTAATCTTTTCTCAGCA
TTTGCGGTTAGAATCTTTTCTCAGCATTTGCGGTTAGAATCTTTTCTCAGCATTTGCGGTTAGAA
TCTTCTCAGCATTTGCGGTTAGAATCTTTCCTCAGCATTTGCGGTTAGAATCTTTTCTCAGCATT
TGCGGTTAGAATCTTTTCTCAGCATTTGCGGTTAGA
Found at i:49372 original size:26 final size:26
Alignment explanation
Indices: 49342--49522 Score: 339
Period size: 26 Copynumber: 7.0 Consensus size: 26
49332 CAAAAGGGTT
49342 AATCTTTTCTCAGCATTTGCGGTTAG
1 AATCTTTTCTCAGCATTTGCGGTTAG
49368 AATCTTTTCTCAGCATTTGCGGTTAG
1 AATCTTTTCTCAGCATTTGCGGTTAG
49394 AATCTTTTCTCAGCATTTGCGGTTAG
1 AATCTTTTCTCAGCATTTGCGGTTAG
49420 AATC--TTCTCAGCATTTGCGGTTAG
1 AATCTTTTCTCAGCATTTGCGGTTAG
*
49444 AATCTTTCCTCAGCATTTGCGGTTAG
1 AATCTTTTCTCAGCATTTGCGGTTAG
49470 AATCTTTTCTCAGCATTTGCGGTTAG
1 AATCTTTTCTCAGCATTTGCGGTTAG
49496 AATCTTTTCTCAGCATTTGCGGTTAG
1 AATCTTTTCTCAGCATTTGCGGTTAG
49522 A
1 A
Statistics
Matches: 151, Mismatches: 2, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
24 24 0.16
26 127 0.84
ACGTcount: A:0.20, C:0.20, G:0.19, T:0.41
Consensus pattern (26 bp):
AATCTTTTCTCAGCATTTGCGGTTAG
Left flanking sequence: Indices 48842 -- 49341
TTAAAGTATAACTTGAAACACAGTAAATTCATCCAACTTCAAGACTCCTTGATAGTATCTAAAGC
AGTTTGAAACCAATTTTGGTAGAATTTTTGACAGCACTGTGGTCCATTTGAAACTGGTGCTTGGC
ATGAAGACTTCGTGGCCAAGTTTGGTTAAGGCGTGCGACTGTTAATCGCAAGATCGTGAGTTCAA
TCCTCACCGAGGTCGACACATCTGTTTTTTGCCTCTAGCCACGAGAATTTGCGTTTAGTTGAGTC
TATAGCTTTCCCTCTCAACAATATTTATAGCGTTTTGCAGTTTTTCTGTACATTGATGAAAATCT
TCGCGCCACTCGGATCAGATAGATTTTCCGAAGGGCACATTTCCGAAGCGCATATTTCCGGATAA
ATCCCGCTTTCGGAGCTATTTTCCAGGCATTTGAAGTTAAAATACGTAAATGGCAAGCAGATATA
AAACTATGAAAAGTCCATTATACAACAACAATTACCAAAAGGGTT
Right flanking sequence: None
Found at i:49464 original size:76 final size:77
Alignment explanation
Indices: 49342--49522 Score: 328
Period size: 76 Copynumber: 2.3 Consensus size: 77
49332 CAAAAGGGTT
*
49342 AATCTTTTCTCAGCATTTGCGGTTAGAATCTTTTCTCAGCATTTGCGGTTAGAATCTTTTCTCAG
1 AATC-TTTCTCAGCATTTGCGGTTAGAATCTTTCCTCAGCATTTGCGGTTAGAATCTTTTCTCAG
49407 CATTTGCGGTTAG
65 CATTTGCGGTTAG
49420 AATC-TTCTCAGCATTTGCGGTTAGAATCTTTCCTCAGCATTTGCGGTTAGAATCTTTTCTCAGC
1 AATCTTTCTCAGCATTTGCGGTTAGAATCTTTCCTCAGCATTTGCGGTTAGAATCTTTTCTCAGC
49484 ATTTGCGGTTAG
66 ATTTGCGGTTAG
49496 AATCTTTTCTCAGCATTTGCGGTTAGA
1 AATC-TTTCTCAGCATTTGCGGTTAGA
Statistics
Matches: 100, Mismatches: 1, Indels: 4
0.95 0.01 0.04
Matches are distributed among these distances:
76 75 0.75
78 25 0.25
ACGTcount: A:0.20, C:0.20, G:0.19, T:0.41
Consensus pattern (77 bp):
AATCTTTCTCAGCATTTGCGGTTAGAATCTTTCCTCAGCATTTGCGGTTAGAATCTTTTCTCAGC
ATTTGCGGTTAG
Left flanking sequence: Indices 48842 -- 49341
TTAAAGTATAACTTGAAACACAGTAAATTCATCCAACTTCAAGACTCCTTGATAGTATCTAAAGC
AGTTTGAAACCAATTTTGGTAGAATTTTTGACAGCACTGTGGTCCATTTGAAACTGGTGCTTGGC
ATGAAGACTTCGTGGCCAAGTTTGGTTAAGGCGTGCGACTGTTAATCGCAAGATCGTGAGTTCAA
TCCTCACCGAGGTCGACACATCTGTTTTTTGCCTCTAGCCACGAGAATTTGCGTTTAGTTGAGTC
TATAGCTTTCCCTCTCAACAATATTTATAGCGTTTTGCAGTTTTTCTGTACATTGATGAAAATCT
TCGCGCCACTCGGATCAGATAGATTTTCCGAAGGGCACATTTCCGAAGCGCATATTTCCGGATAA
ATCCCGCTTTCGGAGCTATTTTCCAGGCATTTGAAGTTAAAATACGTAAATGGCAAGCAGATATA
AAACTATGAAAAGTCCATTATACAACAACAATTACCAAAAGGGTT
Right flanking sequence: None
Done.