Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: C8001
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 56595
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.23
Found at i:539 original size:16 final size:16
Alignment explanation
Indices: 505--564 Score: 88
Period size: 16 Copynumber: 3.9 Consensus size: 16
495 TCTCCACCTA
505 CATTTCCATCTCC--G
1 CATTTCCATCTCCGTG
519 CATTTCCATCTCCGTG
1 CATTTCCATCTCCGTG
*
535 CATTTCCATCTCCGTA
1 CATTTCCATCTCCGTG
*
551 CATCTCCATCTCCG
1 CATTTCCATCTCCG
565 GACATCTCCA
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
14 13 0.31
16 29 0.69
ACGTcount: A:0.15, C:0.42, G:0.08, T:0.35
Consensus pattern (16 bp):
CATTTCCATCTCCGTG
Left flanking sequence: Indices 5 -- 504
CCCGAGGCTGTGAGGGGTGTGAGCCCAGGGGAGCGAGCAAAAAGCTCGGGTGACGGGATGTGGCG
ATAGGGACTAGGGCTGGACGTTTTGGTGGTAGCCGTGCTGAGTGAGGCGGCTGAGTGCGGTGGCT
CGACACGAGTAACCTGGGGTAGATGATGCGATGTCAAATGCGATGCGCCGTTGAGCCGGGACGTA
GAGGCGGTTGCTGGTATAGAGGTGGCATCGTACGGGGGGCGGTGTTGCTGTAGAGTGAGAGGGTA
CATGGACAGGTGGAGCCGGTAAATCCGCTACGGAGACTGTAGGGCCGAAGACTGTAGGCTCGCTG
GCATTTTGTGAGTCTTTGGGTGTTGCGACCGTAGGTGGTACGTTTATTACTATGAGTGTAGTATA
CTGTGTTGGGCATACAGCCTAGCGTCCCCTTTTTGCGTACCCAGTACCATTTTGTACCAGTGACG
GCTCCTTCCGCAAACGTACACGTAGCATCTCCACATCTCCACCTA
Right flanking sequence: Indices 565 -- 1064
GACATCTCCACCTCCCATTGCGAGCCCTGGTGCTGTCACCCAGCCACGGCTGGACCGTCTCAATG
GCACCTTCCCACTCACCACCGCTCTTTGGTCTCGTAAAAATGCTTCCCTAACGCCACAGAACATT
CACAGGTGACACAAGCACTCCTGTAACCCACTCACTTTCGAAGCATTTCCAACCTCTACAATCCA
CCCGTAACCTTACCCCCCAAAACCAAACTCTCCCAGTCTCTCCCCACCTTGGGCCAACTTTAGCC
CACCCAAGCCCCTCTGTTGCTTCTATTATCATGCGGGCCCACGTCAGCTCGCAACCGTTGGCTGA
AGTGTCACCGCGTGTGGTGTCTGCCTAACGAGCCCAAGCCACCACGCCACCGGCCAATTACCGGT
TTCCATCCTCCACCCCACCAAAACCTACCTAAATTACACACATCCGCCACCCCACACCACCCCCA
CATATCCACCACTTGCTCCCACCGCAACCCACACCAATTGCGCCA
Found at i:541 original size:30 final size:31
Alignment explanation
Indices: 505--564 Score: 95
Period size: 30 Copynumber: 1.9 Consensus size: 31
495 TCTCCACCTA
*
505 CATTTCCATCTCCG-CATTTCCATCTCCGTG
1 CATTTCCATCTCCGACATCTCCATCTCCGTG
535 CATTTCCATCTCCGTACATCTCCATCTCCG
1 CATTTCCATCTCCG-ACATCTCCATCTCCG
565 GACATCTCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 14 0.52
32 13 0.48
ACGTcount: A:0.15, C:0.42, G:0.08, T:0.35
Consensus pattern (31 bp):
CATTTCCATCTCCGACATCTCCATCTCCGTG
Left flanking sequence: Indices 5 -- 504
CCCGAGGCTGTGAGGGGTGTGAGCCCAGGGGAGCGAGCAAAAAGCTCGGGTGACGGGATGTGGCG
ATAGGGACTAGGGCTGGACGTTTTGGTGGTAGCCGTGCTGAGTGAGGCGGCTGAGTGCGGTGGCT
CGACACGAGTAACCTGGGGTAGATGATGCGATGTCAAATGCGATGCGCCGTTGAGCCGGGACGTA
GAGGCGGTTGCTGGTATAGAGGTGGCATCGTACGGGGGGCGGTGTTGCTGTAGAGTGAGAGGGTA
CATGGACAGGTGGAGCCGGTAAATCCGCTACGGAGACTGTAGGGCCGAAGACTGTAGGCTCGCTG
GCATTTTGTGAGTCTTTGGGTGTTGCGACCGTAGGTGGTACGTTTATTACTATGAGTGTAGTATA
CTGTGTTGGGCATACAGCCTAGCGTCCCCTTTTTGCGTACCCAGTACCATTTTGTACCAGTGACG
GCTCCTTCCGCAAACGTACACGTAGCATCTCCACATCTCCACCTA
Right flanking sequence: Indices 565 -- 1064
GACATCTCCACCTCCCATTGCGAGCCCTGGTGCTGTCACCCAGCCACGGCTGGACCGTCTCAATG
GCACCTTCCCACTCACCACCGCTCTTTGGTCTCGTAAAAATGCTTCCCTAACGCCACAGAACATT
CACAGGTGACACAAGCACTCCTGTAACCCACTCACTTTCGAAGCATTTCCAACCTCTACAATCCA
CCCGTAACCTTACCCCCCAAAACCAAACTCTCCCAGTCTCTCCCCACCTTGGGCCAACTTTAGCC
CACCCAAGCCCCTCTGTTGCTTCTATTATCATGCGGGCCCACGTCAGCTCGCAACCGTTGGCTGA
AGTGTCACCGCGTGTGGTGTCTGCCTAACGAGCCCAAGCCACCACGCCACCGGCCAATTACCGGT
TTCCATCCTCCACCCCACCAAAACCTACCTAAATTACACACATCCGCCACCCCACACCACCCCCA
CATATCCACCACTTGCTCCCACCGCAACCCACACCAATTGCGCCA
Found at i:569 original size:16 final size:16
Alignment explanation
Indices: 504--579 Score: 86
Period size: 16 Copynumber: 4.9 Consensus size: 16
494 ATCTCCACCT
504 ACATTTCCATCTCC-G
1 ACATTTCCATCTCCGG
519 -CATTTCCATCTCCGTG
1 ACATTTCCATCTCCG-G
*
535 -CATTTCCATCTCCGT
1 ACATTTCCATCTCCGG
*
550 ACATCTCCATCTCCGG
1 ACATTTCCATCTCCGG
* *
566 ACATCTCCACCTCC
1 ACATTTCCATCTCC
580 CATTGCGAGC
Statistics
Matches: 54, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
14 13 0.24
16 41 0.76
ACGTcount: A:0.17, C:0.43, G:0.08, T:0.32
Consensus pattern (16 bp):
ACATTTCCATCTCCGG
Left flanking sequence: Indices 4 -- 503
GCCCGAGGCTGTGAGGGGTGTGAGCCCAGGGGAGCGAGCAAAAAGCTCGGGTGACGGGATGTGGC
GATAGGGACTAGGGCTGGACGTTTTGGTGGTAGCCGTGCTGAGTGAGGCGGCTGAGTGCGGTGGC
TCGACACGAGTAACCTGGGGTAGATGATGCGATGTCAAATGCGATGCGCCGTTGAGCCGGGACGT
AGAGGCGGTTGCTGGTATAGAGGTGGCATCGTACGGGGGGCGGTGTTGCTGTAGAGTGAGAGGGT
ACATGGACAGGTGGAGCCGGTAAATCCGCTACGGAGACTGTAGGGCCGAAGACTGTAGGCTCGCT
GGCATTTTGTGAGTCTTTGGGTGTTGCGACCGTAGGTGGTACGTTTATTACTATGAGTGTAGTAT
ACTGTGTTGGGCATACAGCCTAGCGTCCCCTTTTTGCGTACCCAGTACCATTTTGTACCAGTGAC
GGCTCCTTCCGCAAACGTACACGTAGCATCTCCACATCTCCACCT
Right flanking sequence: Indices 580 -- 1079
CATTGCGAGCCCTGGTGCTGTCACCCAGCCACGGCTGGACCGTCTCAATGGCACCTTCCCACTCA
CCACCGCTCTTTGGTCTCGTAAAAATGCTTCCCTAACGCCACAGAACATTCACAGGTGACACAAG
CACTCCTGTAACCCACTCACTTTCGAAGCATTTCCAACCTCTACAATCCACCCGTAACCTTACCC
CCCAAAACCAAACTCTCCCAGTCTCTCCCCACCTTGGGCCAACTTTAGCCCACCCAAGCCCCTCT
GTTGCTTCTATTATCATGCGGGCCCACGTCAGCTCGCAACCGTTGGCTGAAGTGTCACCGCGTGT
GGTGTCTGCCTAACGAGCCCAAGCCACCACGCCACCGGCCAATTACCGGTTTCCATCCTCCACCC
CACCAAAACCTACCTAAATTACACACATCCGCCACCCCACACCACCCCCACATATCCACCACTTG
CTCCCACCGCAACCCACACCAATTGCGCCACCCACGCTTAGCGAA
Found at i:1779 original size:18 final size:18
Alignment explanation
Indices: 1752--1793 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
1742 TACGCCATCA
* *
1752 AGGTGTTGAAGAAGCAGC
1 AGGTGGTGAAGAAGAAGC
*
1770 AGGTGGTGAAGATGAAGC
1 AGGTGGTGAAGAAGAAGC
1788 AGGTGG
1 AGGTGG
1794 AGCACACCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.31, C:0.07, G:0.45, T:0.17
Consensus pattern (18 bp):
AGGTGGTGAAGAAGAAGC
Left flanking sequence: Indices 1252 -- 1751
TCCCGTCAATTGGTTGACCCTGAGCCCTCGCTACCTCCTGTTCCCCTCGCGTTAGTTTGCTCTCT
CGCCTCGAGAGGCTACCATGACAAATTTGTTGAAAAAGCTCACAAACATCACTAAGAACCCGCCG
CAAAACCAACAACTGAAGGACATGGCGTACTACCAGCAGCCGCAGGCTGCCCACCCGCAGCAGTC
GCCGCCGCAGCAGCAACAAACCCACTTGGTGTCCCAGGGAACCGGGTTTACCCCCGAAGCGGGTG
CAGCCACCACCCAGGCGCTGACGGACGCTGCCACCGTGCCCCTGGGCCACGTAGCGGCACAACTG
GCCACGCTGGCGGCCCAGGACGCCATCCAGGCTCTGTTGTTGCCCCAGCGGCTGACGGTGTCCAA
GGGCAAGTACCTGTTGACCGACTTTGCCATCATGCGGACCTTGGGCACGGGGCTGTTTGGCCGGG
TGCACTTGGTGCGCAGTGTGCACAATGGCCGCTACTACGCCATCA
Right flanking sequence: Indices 1794 -- 2293
AGCACACCAACGACGAGCGGCGGATGTTGAAGTTGGTGGAGCACCCGTTTCTCATCCGGATGTGG
GGCACCTTCCAGGACGCGAAAAACTTGTTTATGGTGATGGACTACATCGAGGGAGGCGAGTTGTT
TTCGCTTTTGCGCAAGCTGCAGCGGTTCCCCAACCCGGTGGCCAAGTTCTATGCTGCCGAGGTGA
CGCTTGCGTTGGAGTACTTGCACTCGCACAACATCATCTACCGCGACTTGAAGCCCGAGAACATT
TTGCTTGACCGCAACGGGCACATCAAAATCACCGACTTTGGTTTTGCCAAGGAGGTGAGCACGGT
CACGTGGACGTTGTGCGGGACCCCCGACTACATTGCCCCGGAGGTGATCACCACCAAGCCCTACA
ACAAGAGTGTCGACTGGTGGCTGTTGGGGGTGCTTATCTTTGAGATGTTGGCCGGGTACACCCCG
TTCTACGACCTGACGCCGATGAAGACCTACGAGAAGATCCTTTCG
Found at i:2928 original size:21 final size:22
Alignment explanation
Indices: 2866--3082 Score: 176
Period size: 22 Copynumber: 10.3 Consensus size: 22
2856 CAAGTAGGGA
2866 ATGTCAAAT--GCCACT-AAGGC
1 ATGTCAAATAGGCCACTGAA-GC
2886 ATGTC--A-AGGCCACTGAAGC
1 ATGTCAAATAGGCCACTGAAGC
2905 ATGTCAAATAGGCCACTG-AGC
1 ATGTCAAATAGGCCACTGAAGC
*
2926 ATGTCAAATAAGG-CATTGAAGC
1 ATGTCAAAT-AGGCCACTGAAGC
2948 ATGTC-AATAAGG-CACTGAAGC
1 ATGTCAAAT-AGGCCACTGAAGC
* *
2969 ATGTCAAATTGGCCACTAAAGC
1 ATGTCAAATAGGCCACTGAAGC
* *
2991 ACGTC-AATAGGGCTACTGAAGC
1 ATGTCAAATA-GGCCACTGAAGC
* *
3013 ATGTCAAATACGCCAC-GAGGC
1 ATGTCAAATAGGCCACTGAAGC
* *
3034 ATGTCATA-AGG-CATTGAAGC
1 ATGTCAAATAGGCCACTGAAGC
* * *
3054 ATGTC-AATAAGACCACTAAAAC
1 ATGTCAAAT-AGGCCACTGAAGC
3076 ATGTCAA
1 ATGTCAA
3083 TATTGTGGCC
Statistics
Matches: 159, Mismatches: 21, Indels: 31
0.75 0.10 0.15
Matches are distributed among these distances:
18 1 0.01
19 16 0.10
20 18 0.11
21 55 0.35
22 64 0.40
23 5 0.03
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.20
Consensus pattern (22 bp):
ATGTCAAATAGGCCACTGAAGC
Left flanking sequence: Indices 2366 -- 2865
TTGACCCGGCGGTTGGGCAACTTGCAGAACGGGCCCGCCGACATCCGCAACCACCCGTGGTTTGC
CGAGGTGGTGTGGGAAAAGTTGCTTGCCAAGGACATCGAGACCCCCTACGAGCCGCCCATCACCG
CTGGTGTCGGTGACTCGTCGTTGTTTGACCACTATCCCGAGGAGCAGTTGGACTACGGCGCTGGT
GGGGACGACCCGTACCAGGAGTACTTCCAGGACTTTTGATTTAAATGAGACAATAACACAGACAG
TAAACTGGCGTAGGCTGTTTGTGTCATGGCACGGCTGCAAACGGCTGCAAATATGCACACAATCG
AAAAAATAGAACACGAACCCTCGGTTGGCGTATCGACGATACCCGGCGGCCCTTTGGTGATGTGT
CTGCCGATCGGGGGCTCAGCACCGGCGCTCCGCGGCAGCTGCCTTATCGTGTTGCATATCCAACC
TTCGCTTGCATGACTTGATAGGTGATGCAGCGTGTCAAGTAGGGA
Right flanking sequence: Indices 3083 -- 3582
TATTGTGGCCGTTACTAAACCACACCTAATCGTGTCACAAATACTATTATGTCTATTAGATCGTT
ATCATTAATTACCACCCGAAGCGCAACTGGTTGGCCGTGAACAACGGCGGCGTCCAGCTGAGCTT
GCGGTGGTCCAACTCGTGTTTCTTCTTCTCCTTGATCTTCTTGATGAGCTTCTCGTAAATCGCCA
TGATCTGGTCGGTGATGACGATGATGTGCTGGCCCTTGTAGTAGCGCAAGATCTGGAGCGTGGTG
AGGGTGTGGAGAATGTCGGTGGTGGTCATGCACGTGATGGACGAGATCTCCTCGATGGTGATCTC
CAGCGACAGCGCCTTGGGGTGCTCCTCGTCGTCCAGGTCGTCGGGGTTGTTCTTTTTGTACAACT
GCGGGTTGTTGCGCTCGACGAGAAGCTTGACGAGCGTGTCGGTCCAGAACGCACGGTACGACAAC
AACCCCAAGTCCGAGAGCGGCTTCTCCGGCAGCCCGATCTTGTGC
Found at i:2950 original size:43 final size:44
Alignment explanation
Indices: 2891--3084 Score: 190
Period size: 43 Copynumber: 4.5 Consensus size: 44
2881 AAGGCATGTC
2891 AAGGCCACTGAAGCATGTCAAATAGGCCACTG-AGCATGTCAAAT
1 AAGGCCACTGAAGCATGTC-AATAGGCCACTGAAGCATGTCAAAT
*
2935 AAGG-CATTGAAGCATGTCAATAAGG-CACTGAAGCATGTCAAAT
1 AAGGCCACTGAAGCATGTCAAT-AGGCCACTGAAGCATGTCAAAT
* * * *
2978 -TGGCCACTAAAGCACGTCAATAGGGCTACTGAAGCATGTCAAAT
1 AAGGCCACTGAAGCATGTCAATA-GGCCACTGAAGCATGTCAAAT
* * *
3022 -ACGCCAC-GAGGCATGTC-ATAAGG-CATTGAAGCATGTC-AAT
1 AAGGCCACTGAAGCATGTCAAT-AGGCCACTGAAGCATGTCAAAT
* * *
3062 AAGACCACTAAAACATGTCAATA
1 AAGGCCACTGAAGCATGTCAATA
3085 TTGTGGCCGT
Statistics
Matches: 123, Mismatches: 18, Indels: 20
0.76 0.11 0.12
Matches are distributed among these distances:
40 3 0.02
41 17 0.14
42 23 0.19
43 54 0.44
44 26 0.21
ACGTcount: A:0.38, C:0.21, G:0.22, T:0.20
Consensus pattern (44 bp):
AAGGCCACTGAAGCATGTCAATAGGCCACTGAAGCATGTCAAAT
Left flanking sequence: Indices 2391 -- 2890
AGAACGGGCCCGCCGACATCCGCAACCACCCGTGGTTTGCCGAGGTGGTGTGGGAAAAGTTGCTT
GCCAAGGACATCGAGACCCCCTACGAGCCGCCCATCACCGCTGGTGTCGGTGACTCGTCGTTGTT
TGACCACTATCCCGAGGAGCAGTTGGACTACGGCGCTGGTGGGGACGACCCGTACCAGGAGTACT
TCCAGGACTTTTGATTTAAATGAGACAATAACACAGACAGTAAACTGGCGTAGGCTGTTTGTGTC
ATGGCACGGCTGCAAACGGCTGCAAATATGCACACAATCGAAAAAATAGAACACGAACCCTCGGT
TGGCGTATCGACGATACCCGGCGGCCCTTTGGTGATGTGTCTGCCGATCGGGGGCTCAGCACCGG
CGCTCCGCGGCAGCTGCCTTATCGTGTTGCATATCCAACCTTCGCTTGCATGACTTGATAGGTGA
TGCAGCGTGTCAAGTAGGGAATGTCAAATGCCACTAAGGCATGTC
Right flanking sequence: Indices 3085 -- 3584
TTGTGGCCGTTACTAAACCACACCTAATCGTGTCACAAATACTATTATGTCTATTAGATCGTTAT
CATTAATTACCACCCGAAGCGCAACTGGTTGGCCGTGAACAACGGCGGCGTCCAGCTGAGCTTGC
GGTGGTCCAACTCGTGTTTCTTCTTCTCCTTGATCTTCTTGATGAGCTTCTCGTAAATCGCCATG
ATCTGGTCGGTGATGACGATGATGTGCTGGCCCTTGTAGTAGCGCAAGATCTGGAGCGTGGTGAG
GGTGTGGAGAATGTCGGTGGTGGTCATGCACGTGATGGACGAGATCTCCTCGATGGTGATCTCCA
GCGACAGCGCCTTGGGGTGCTCCTCGTCGTCCAGGTCGTCGGGGTTGTTCTTTTTGTACAACTGC
GGGTTGTTGCGCTCGACGAGAAGCTTGACGAGCGTGTCGGTCCAGAACGCACGGTACGACAACAA
CCCCAAGTCCGAGAGCGGCTTCTCCGGCAGCCCGATCTTGTGCTC
Found at i:4329 original size:18 final size:18
Alignment explanation
Indices: 4289--4331 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
4279 TTGGATGTGC
4289 CCTTGCTGGTTTTGCTGG
1 CCTTGCTGGTTTTGCTGG
*
4307 TCTTGCTGGTTTT-CGTGG
1 CCTTGCTGGTTTTGC-TGG
4325 CCTTGCT
1 CCTTGCT
4332 CTTGCTCGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
17 1 0.05
18 21 0.95
ACGTcount: A:0.00, C:0.23, G:0.30, T:0.47
Consensus pattern (18 bp):
CCTTGCTGGTTTTGCTGG
Left flanking sequence: Indices 3789 -- 4288
TTTGTGGTCCAAAAAGAGTTTGGAGAGAAGACACAAGTTGCGGCACCACGTACGCTGTTTGCGCC
CGTCGATCTCCCAGAACAGCACCTTGGAATCGCGGTAGATCTCGTTCCCGGGCGGGTGGGTCATC
AGGCACTTCTTGCGGAACCGCTCGTACTCCTTTTTGCTGCCAAAGTAGCAGAGGGAAAAGTCGCA
GATGTAGATTTCGTCGCACTCGGTGAGCTCAATAGGGTACGGCGAGAAGTACCACGGCTCGCAAA
TGTGTTCTCCGAGAATGATCGTCCCGAGATTTCGCACCCGCGACACCTCCAGGTGGTTCTGGGTC
ATGGACCCGGATGTGCGCAACTTCTTGATCTCCTCTTCGCGCAGCACCTCTTCGCCTGCGCGTTT
CAACCCCTGGACGTTCAAGTTTTCGAGATCGAGCTCGTCCTCCTCGAGCGCGGGCAGTTCCTCGT
CGGGGGTGTCCTTCGACGGGCCCTTTGACGGGCCCTTGGATGTGC
Right flanking sequence: Indices 4332 -- 4831
CTTGCTCGTCTTCCCCGGGGGGTTTGACTTCAGCGTCTTTTTCTTTTTGTCCTCCTCGACTTTTA
CCTCGGGGAGGATGAGCTGGCGGTTCATGTCGATGCGGTCGGCAGAGATCCACTCGTCCAACCGC
TTGTTGTACTCCTGGTAGTGGACATAGTACACCTTTTTGCCTCGTTTGACGTGCTCCTGGAGGAT
CTCGGCTAGTCGGTGCTCTCCGTCCTTGAGCGCCCACACTTTGCACCCGATCAAGATCTCCTCCT
CGGTGAACAGCCCCTTTTGGTCTGTGGTGAGCTTCATGGGGCTCTTGGGCGCTGGACTCATGGTG
CCTGGGTGTTTGGGTGGTGGTTTGGTCAGATTTTTTCGCCTCGCAAGTGCGGCTCATACGCCACC
GCCACAAACACGGGAGGTAGGAAAGGGGGTGGTTGGTGGCGATGGTAGAAAAGAGAGGTTGGATA
GATATCCCTTGCTTCATTTTTGAACACTTGAGCTTGCCTTGAGTT
Found at i:8445 original size:12 final size:12
Alignment explanation
Indices: 8428--8454 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
8418 CGGCATCGGA
8428 GGAGGAGGCACC
1 GGAGGAGGCACC
8440 GGAGGAGGCACC
1 GGAGGAGGCACC
8452 GGA
1 GGA
8455 AGAACCATTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.26, C:0.22, G:0.52, T:0.00
Consensus pattern (12 bp):
GGAGGAGGCACC
Left flanking sequence: Indices 7928 -- 8427
AACCCGCCAAACGTGGTGTGGGTCGCACACGCACACTGCTCGTCGGGGTCGCGCTTGAAGTGCCC
GTTGGCCACCTCCAGAATGAGCTCGTGGTCCAGGTGGATCTCGTTGAGCATAAACTGCCAGAACT
CGTGCGCGTCCTGCTCCTGGAACCCCGCGAGCAGGTTGTTTTTGTACCACGCCGTCAGCAACAAA
TGGGTCAACCCAAACCCCTCGGGCAGCGCCAGCGTGTAGAACAGAGTGAAGATGTTGTCGAGGGC
ACAGGTGATGCAGGCGTTGCCCTCGTCCACCAGCTGGCTCACCAAGAATGCTTTGTTTTTCGGGC
AGTTGAAGTAGTGGAGGTCGTTGTTGACGAAGTAGTGCTTCATGAGCGGGTTGTGGATGAGCGTC
TGGAGAATCAGCAGCATGAAGCAGGTGGCGCCAAGGTTGACAAACCCCTTGAGGCCCGCCATCGC
CCGTGGCGCCGGATCGGTGTAGCCAGAGGCACCGGCGGCATCGGA
Right flanking sequence: Indices 8455 -- 8954
AGAACCATTGGCCCCTCCGTTGGCGGAGCCGTTGGCCACAGGGCCCGATCTCCCTAGCCGGAGGG
AGTCTAGGGCGTCGTGGTTGGTGTAGGCGTCGCAGGCAAAGCAGTACATCACCCCACACCCCAGA
TCAATGCCAAACATGTGGTGGTTGCTCTTGAAGTGGGCGCGGGTGTGCACATCGCACCCCACATG
CGGGCACTGGAGACAGATGTAGTTGCACTCGTGGTACACCTGGCACTCCGAGCACGCGAGTGCCG
CCGTCTTCATCCGCACCAACTTCGCCGTGGGCACCTCCAGCTGGTCCTTGCGCGAGGTGCACCGC
AGCGCGTGCAGGAGCTGGGTGATCAGCACCGCCTGGCGGTAGGTGGTGAGCACGTTGTCACGCGC
CTTGGCCAACACCTGCGCCAAGTGGGGACACGTTGGTAGCAGCAGGTAGTTGTCAAAGTCCATAG
TCGCCCCACTGAATCTGGCTGCGTCGAAAATCGGCAGACATCGCG
Found at i:9256 original size:19 final size:21
Alignment explanation
Indices: 9231--9278 Score: 73
Period size: 19 Copynumber: 2.4 Consensus size: 21
9221 GAGGGAGAGG
*
9231 AGGTGGTGGTGGAT-GTGGGT
1 AGGTGGTGGTGGATGGTGAGT
9251 -GGTGGTGGTGGATGGTGAGT
1 AGGTGGTGGTGGATGGTGAGT
9271 AGGTGGTG
1 AGGTGGTG
9279 AATGTTAGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
19 13 0.52
20 5 0.20
21 7 0.28
ACGTcount: A:0.10, C:0.00, G:0.60, T:0.29
Consensus pattern (21 bp):
AGGTGGTGGTGGATGGTGAGT
Left flanking sequence: Indices 8731 -- 9230
CAACTTCGCCGTGGGCACCTCCAGCTGGTCCTTGCGCGAGGTGCACCGCAGCGCGTGCAGGAGCT
GGGTGATCAGCACCGCCTGGCGGTAGGTGGTGAGCACGTTGTCACGCGCCTTGGCCAACACCTGC
GCCAAGTGGGGACACGTTGGTAGCAGCAGGTAGTTGTCAAAGTCCATAGTCGCCCCACTGAATCT
GGCTGCGTCGAAAATCGGCAGACATCGCGCGCCGAAAAGAGGTGGTGGGGTGGATGGGTGGGGGA
ACCAGCGGCGGAGTGGGGGTGGTGGGGAGTGGTGTCGTGCGGTGGTAGGGTGGTCGTGGTGTGGT
GGGGGTGATTTTGGGTTTGGGTCGGTTTTTTTAGATTTTTGGTGGGGAATGGTGGAGTTGGTGTG
GGTGGAACGGCTTATCGGTGGATCGGGTGTGCGTGAGGAGAGTATAAGCGGAGGAGAGGTGTGAG
GAGGGATGGAGGGAGGCGTGAGTGTGCTGGGTGTAGAGGGAGAGG
Right flanking sequence: Indices 9279 -- 9778
AATGTTAGATAGGTGGTGAGAGATGGGTGAGACAGTGGAGAAGGATGAAACGCTGGCAATAGTAA
TGATCGTATGTAAGAATCTCGTGGTAGGAGAGAGATTGGTAGGAGAGAGATTGGTTGGGGAGAGA
TATAAGGAGCAAGGGCTTAAGGTTTGGTGTATACACTGTGCTGGTGAGACGGATCGTGCTGATTG
TGGTGGGTGGAATAGTGGTTATGATCTGTCAAGGGTTACGAAGGTGGTGTTTACTGGCCTGTTGG
TGATTGTAGCGAATGGGTAGAGGAATGGTATGAGGTGTCGAGATGAGTGGCTTTTGTTTCAGGAA
TACGAGTTTGGTGCTTTAGGGAAACTGAAATAGTTAGGTAGAGTGATGACAAGTGTTCCACGTTA
GTTGAACCACTCCAAGTGATGATTAGTGGTGCTTGTAGAGAAGAACAGGACCAGTGACAACGTAG
AACAGTGGTACAACGGAGCAGGTCAAATACTTGAAATTTCGGTTT
Found at i:9277 original size:18 final size:18
Alignment explanation
Indices: 9254--9297 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
9244 TGTGGGTGGT
*
9254 GGTGGTGGATGGTGAG-TA
1 GGTGGTGAAT-GTGAGATA
*
9272 GGTGGTGAATGTTAGATA
1 GGTGGTGAATGTGAGATA
9290 GGTGGTGA
1 GGTGGTGA
9298 GAGATGGGTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 19 0.83
ACGTcount: A:0.20, C:0.00, G:0.50, T:0.30
Consensus pattern (18 bp):
GGTGGTGAATGTGAGATA
Left flanking sequence: Indices 8754 -- 9253
GCTGGTCCTTGCGCGAGGTGCACCGCAGCGCGTGCAGGAGCTGGGTGATCAGCACCGCCTGGCGG
TAGGTGGTGAGCACGTTGTCACGCGCCTTGGCCAACACCTGCGCCAAGTGGGGACACGTTGGTAG
CAGCAGGTAGTTGTCAAAGTCCATAGTCGCCCCACTGAATCTGGCTGCGTCGAAAATCGGCAGAC
ATCGCGCGCCGAAAAGAGGTGGTGGGGTGGATGGGTGGGGGAACCAGCGGCGGAGTGGGGGTGGT
GGGGAGTGGTGTCGTGCGGTGGTAGGGTGGTCGTGGTGTGGTGGGGGTGATTTTGGGTTTGGGTC
GGTTTTTTTAGATTTTTGGTGGGGAATGGTGGAGTTGGTGTGGGTGGAACGGCTTATCGGTGGAT
CGGGTGTGCGTGAGGAGAGTATAAGCGGAGGAGAGGTGTGAGGAGGGATGGAGGGAGGCGTGAGT
GTGCTGGGTGTAGAGGGAGAGGAGGTGGTGGTGGATGTGGGTGGT
Right flanking sequence: Indices 9298 -- 9797
GAGATGGGTGAGACAGTGGAGAAGGATGAAACGCTGGCAATAGTAATGATCGTATGTAAGAATCT
CGTGGTAGGAGAGAGATTGGTAGGAGAGAGATTGGTTGGGGAGAGATATAAGGAGCAAGGGCTTA
AGGTTTGGTGTATACACTGTGCTGGTGAGACGGATCGTGCTGATTGTGGTGGGTGGAATAGTGGT
TATGATCTGTCAAGGGTTACGAAGGTGGTGTTTACTGGCCTGTTGGTGATTGTAGCGAATGGGTA
GAGGAATGGTATGAGGTGTCGAGATGAGTGGCTTTTGTTTCAGGAATACGAGTTTGGTGCTTTAG
GGAAACTGAAATAGTTAGGTAGAGTGATGACAAGTGTTCCACGTTAGTTGAACCACTCCAAGTGA
TGATTAGTGGTGCTTGTAGAGAAGAACAGGACCAGTGACAACGTAGAACAGTGGTACAACGGAGC
AGGTCAAATACTTGAAATTTCGGTTTCTTCCCATACAAAAGTTCT
Found at i:9405 original size:17 final size:15
Alignment explanation
Indices: 9365--9409 Score: 72
Period size: 15 Copynumber: 3.0 Consensus size: 15
9355 AAGAATCTCG
9365 TGGTAGGAGAGAGAT
1 TGGTAGGAGAGAGAT
9380 TGGTAGGAGAGAGAT
1 TGGTAGGAGAGAGAT
* *
9395 TGGTTGGGGAGAGAT
1 TGGTAGGAGAGAGAT
9410 ATAAGGAGCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 28 1.00
ACGTcount: A:0.29, C:0.00, G:0.49, T:0.22
Consensus pattern (15 bp):
TGGTAGGAGAGAGAT
Left flanking sequence: Indices 8865 -- 9364
AGTGGGGACACGTTGGTAGCAGCAGGTAGTTGTCAAAGTCCATAGTCGCCCCACTGAATCTGGCT
GCGTCGAAAATCGGCAGACATCGCGCGCCGAAAAGAGGTGGTGGGGTGGATGGGTGGGGGAACCA
GCGGCGGAGTGGGGGTGGTGGGGAGTGGTGTCGTGCGGTGGTAGGGTGGTCGTGGTGTGGTGGGG
GTGATTTTGGGTTTGGGTCGGTTTTTTTAGATTTTTGGTGGGGAATGGTGGAGTTGGTGTGGGTG
GAACGGCTTATCGGTGGATCGGGTGTGCGTGAGGAGAGTATAAGCGGAGGAGAGGTGTGAGGAGG
GATGGAGGGAGGCGTGAGTGTGCTGGGTGTAGAGGGAGAGGAGGTGGTGGTGGATGTGGGTGGTG
GTGGTGGATGGTGAGTAGGTGGTGAATGTTAGATAGGTGGTGAGAGATGGGTGAGACAGTGGAGA
AGGATGAAACGCTGGCAATAGTAATGATCGTATGTAAGAATCTCG
Right flanking sequence: Indices 9410 -- 9909
ATAAGGAGCAAGGGCTTAAGGTTTGGTGTATACACTGTGCTGGTGAGACGGATCGTGCTGATTGT
GGTGGGTGGAATAGTGGTTATGATCTGTCAAGGGTTACGAAGGTGGTGTTTACTGGCCTGTTGGT
GATTGTAGCGAATGGGTAGAGGAATGGTATGAGGTGTCGAGATGAGTGGCTTTTGTTTCAGGAAT
ACGAGTTTGGTGCTTTAGGGAAACTGAAATAGTTAGGTAGAGTGATGACAAGTGTTCCACGTTAG
TTGAACCACTCCAAGTGATGATTAGTGGTGCTTGTAGAGAAGAACAGGACCAGTGACAACGTAGA
ACAGTGGTACAACGGAGCAGGTCAAATACTTGAAATTTCGGTTTCTTCCCATACAAAAGTTCTCA
CGATATTCTTAAACTACAGGTAGGGTGAGTACCAGGTAAGGCAATGCTGACTATCAATAAACGGT
CCAAGCATCGGTGCATCGAGCTCATCGAATTCACACTACCTAGTC
Found at i:10371 original size:12 final size:12
Alignment explanation
Indices: 10354--10384 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
10344 AGGTCAGCCG
10354 GTTTCTCGGTCT
1 GTTTCTCGGTCT
10366 GTTTCTCGGTCT
1 GTTTCTCGGTCT
10378 GTTTCTC
1 GTTTCTC
10385 TGTGTTTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.00, C:0.26, G:0.23, T:0.52
Consensus pattern (12 bp):
GTTTCTCGGTCT
Left flanking sequence: Indices 9854 -- 10353
CAATAAACGGTCCAAGCATCGGTGCATCGAGCTCATCGAATTCACACTACCTAGTCCCATTAGAA
GTGCTTCGTTGGCCTAATTGTTTGTTTATTACATGCAATGCTATCTCGTTCGCTCCCCGCAATTT
CACCAGATGAAACTCGCTACCGTAGCGCTACCGTAGCCCTAGCTCTCTGGCACCGGATCGGGCTC
GCACAACGACTTCTTCAACGCCGAGAACGACGCGATCCGCGGTTTGGACGGCGCAAGCTTCGCTA
CGTCGTCGGCCTCGCTCTCGAGCGCTACAAACCGCGCGTGGAGAGCCTCGAACTCGGCGTATTTC
TCAGTGTAGGCTTCGCTCATCTGCTTGTATTTCATCGTGAGAGCGTCCAAAGAGCCCGAGACCCG
CTCAAACTCGGCAATTTTCGCCGCCTGCTCGGAGATGGTGGCCTGTTGTTTGGAGATGGTCTTTT
GTTGCTCCAAGATGGTGTCCGAGGTCTTGGACCCCAGGTCAGCCG
Right flanking sequence: Indices 10385 -- 10884
TGTGTTTAAGCCCCCTAAACGGGCCACTAGCTCGGCAATGTCCTTATTATCCCTCTGGTGTAGCA
GGTCTAGCTTCGCCACGATCTCGGGCTGGGGGGTCTTTATGAGCTCCAGAAGGGCGTCGAGCTTC
GCCACAATGTTGTGGATGTCGTTCTTGGTGGCGTTGCCCTCGGTGGTCACCTCATTGGCGTAGGC
AGCGATCTCGGCCACGAGCTTCTGGAGAAAGTTGTTGTTGTTCTTGGACCGCTCCCAGAGCTGGC
CGACGTCAATGCCCGTTTGTTTCGTTTGCAGCTCGATCTGGGCAAGCGTGCCTTCCAAATCAAAT
GCCGGGGGCGGCTTCAGCTCAGCGTCCACGGGCTTCCTGGTGGGGGACCCAGGGCTGTTTTCAGC
GGTTGATTGGCGTAATCCAGCGCGGTAAGGGGAGCTTCCCACGGGCCGGAGCGCCTGGCGGAGCG
CCAAAGGCAGCATGTTCTCCTTATCAGCCATGGTGGGGTGGGTAG
Found at i:10895 original size:13 final size:12
Alignment explanation
Indices: 10872--10905 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
10862 ATCAGCCATG
10872 GTGGGGTGGGTA
1 GTGGGGTGGGTA
*
10884 GTGGGTGTGGGTG
1 GTGGG-GTGGGTA
10897 GTGGGGTGG
1 GTGGGGTGG
10906 AGCTGGTCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
12 9 0.45
13 11 0.55
ACGTcount: A:0.03, C:0.00, G:0.71, T:0.26
Consensus pattern (12 bp):
GTGGGGTGGGTA
Left flanking sequence: Indices 10372 -- 10871
CGGTCTGTTTCTCTGTGTTTAAGCCCCCTAAACGGGCCACTAGCTCGGCAATGTCCTTATTATCC
CTCTGGTGTAGCAGGTCTAGCTTCGCCACGATCTCGGGCTGGGGGGTCTTTATGAGCTCCAGAAG
GGCGTCGAGCTTCGCCACAATGTTGTGGATGTCGTTCTTGGTGGCGTTGCCCTCGGTGGTCACCT
CATTGGCGTAGGCAGCGATCTCGGCCACGAGCTTCTGGAGAAAGTTGTTGTTGTTCTTGGACCGC
TCCCAGAGCTGGCCGACGTCAATGCCCGTTTGTTTCGTTTGCAGCTCGATCTGGGCAAGCGTGCC
TTCCAAATCAAATGCCGGGGGCGGCTTCAGCTCAGCGTCCACGGGCTTCCTGGTGGGGGACCCAG
GGCTGTTTTCAGCGGTTGATTGGCGTAATCCAGCGCGGTAAGGGGAGCTTCCCACGGGCCGGAGC
GCCTGGCGGAGCGCCAAAGGCAGCATGTTCTCCTTATCAGCCATG
Right flanking sequence: Indices 10906 -- 11405
AGCTGGTCTTCTTGGAGATCGGACGTAAACAAACGCGGTCACGTGAGAGATCAGAGGGGGAAGAG
AGGCGATGAGAGAGATGGGGAAGTGAAGAGTTGAGCTGGACGAGCCGGGAAAAAACGGTTAGTAC
AGTAATGGTGGCGGTTTCAAGCGGTTCTTAGCAATGCTTTCCCTTTGTATTATTGAGTGTTTGTT
TCGTAGGATGGTATTCCTTAGATCATTTCGGAGCACACCACAGGCACCAAACCGAAAAAACACCC
AAACTGGGTGGTCAGAAGAACACCCCCGCCCATTCCCCCACCCCAAACCCCCTTTTTTGTCCTCC
CGTCTCTTTGTGTCTAGTCCAATCTGTTTACGAATGTAGACGCAGGACATGTTGCAAAATGGCTG
CAAATCCTGTACCAATTCAATTCTCCGAAAGAGTCACTGGAGACAACCAGACTCATGCCACACCC
TATAGTCCCACTCAAAATGCACTGGTTTCGTTCCTTTACCTCCCG
Found at i:13061 original size:27 final size:27
Alignment explanation
Indices: 13022--13078 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
13012 CAAACCTACA
*
13022 CACCACCACCTCGCCCAGCGCAAGCGC
1 CACCACCACCTCGCCCAGCGCAAACGC
* * *
13049 CACCACCATCTCGCGCAGCTCAAACGC
1 CACCACCACCTCGCCCAGCGCAAACGC
13076 CAC
1 CAC
13079 GCTCACGTGC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.25, C:0.53, G:0.16, T:0.07
Consensus pattern (27 bp):
CACCACCACCTCGCCCAGCGCAAACGC
Left flanking sequence: Indices 12522 -- 13021
AGGTTGGCCAGCTTGTTCTCAAACTGCACCAGCCAGCCCCCGTTGCCCATGGGCACCACCTTGAA
CAGCAAGAAGTGGCCGCCGCCGTTGGTGCCCACGAGGAGCATCAACAGCGAGTACCCGTCGTGCC
CGCACTCCATGATCAGGAACTCGAGGCACGTGGCGTGGCACTTTTCGGTCGACACAAGGAACTCG
GAGAGCAGCTTGGTGTTGAAGATGACGGCGGGGCCGCGGGTGATGTCGCACACCACGAGCCTGCC
CGTCAGATACGCCACCGCCGCGAAGCCTGCGTTGCACATCTTGACACAGGTGATGTTCTCGCCCA
GGGCCAACTGCAAGAGAAACAGCGGAATGAAGGTGGCCACGCCGTTGCCCGCGGTGCGCAGCTCG
ATGTTGATCAACTTGGCGTCCTCGTTGGCGTGCTGGACCGGGCACTGGCTGTAGTCCACCTGGCA
CACTCCCTGGGGCGGCGTCGGGTTGTGGGCCTTGCCAAACCTACA
Right flanking sequence: Indices 13079 -- 13578
GCTCACGTGCAGCACCTTGAGGTACTTGGGGTGCCCGTAGCTGAACAACGAGTCGCCCAAGTTGA
TGGTGACCATCAGCTCGGGGGTCTGCTGGCCGCCACGCGAGATGTCGAGCATCCGCACCACCCCG
TGCTCGTGGCCGGTGATGAGGATCAGCCGGGCGTCGGAGTCAGCGCCTATGGGCCGGGGAGTCAG
GTTCTCGTGGGCGGGCATCCCGCCGCGCAAAAGCATCGCCAGCCGGGCCAGCGCCCCGGTGCTCT
TGCGCAGCAGCAACAACGAGAACCACTCGGTTCGGGACGCCTGTCTGACCTTGGAGAACGTCACC
GGAGGCACCACCATCAGCAACGACGGCGGCAAAAGGAGGTCCAGGGGCGAAACAACACCCGTGGT
GGAGTACGGGACCAAGTACACCAGCCCGTAGTTCAGCAAGAGGAACAAGTAGTGCGGGTCGTGGC
CCCCGTTGAAGTAGCAGAAGTCCGTGGGCGTCACCGGGAGAATCC
Found at i:15734 original size:10 final size:10
Alignment explanation
Indices: 15719--15752 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
15709 TATGAGAACT
15719 AACCGCCAGC
1 AACCGCCAGC
15729 AACCGCCAGC
1 AACCGCCAGC
*
15739 AATCGCCAGC
1 AACCGCCAGC
15749 AACC
1 AACC
15753 ACCGCTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.32, C:0.47, G:0.18, T:0.03
Consensus pattern (10 bp):
AACCGCCAGC
Left flanking sequence: Indices 15219 -- 15718
AAGAAGGAAGTAGGTGGGTAGAAGAAGGAAGTGGATAGGTCTACCGCTGTTCTCTGAGCCCCATT
ACCCAAACTCCACTGTTCTTTCCCTCGTCAAGCTACTCGATTGTGGTTACGTTGAGACCATCTTG
ACCCGATGTTATCATCCTGCACACAACCCAACGGGATTATGGCGAAGCTTCCCCGGCCGGAGTTA
GCACATTTCCATAGATAACAAAGTGGCGTGGTTGTTTCGCTATCCTCCATTTCCTTCTTCGCACC
ATTTTCTCGCAACCCCACGTCCTCGCCCAATCCACTCAACCCTACGTCCTCGCCCGTCTTCCTGT
ACCAACCTCACGTGCGGGTAACTCACCAGCGATAAAACCCATCGCGAATTTTTCAGTCACCACAA
CACACCAACCAGTAAGTTTAATGATTATAATATTTTTCAAACTGCGTTATCGTCATGATCGCGGA
GACACGTCTCCGTAGAGTTGAAATCACCATTGAAATATGAGAACT
Right flanking sequence: Indices 15753 -- 16252
ACCGCTTAAACACCCGTGGGAAACCACTCGTAAACGCCCATCGCCTCCGGCACGGGCCCCCGTAG
ATGTCAGAGCCGCATTGACGTGCTAGACACCGTGCCGACGCGGCTACTCCAGTGTTGTGCGCAGG
CCTATTAATAGCCGGTCTACCGTTAATTTCCAGCGCGACAGACACGGAAGTAGTGACAGCAACCT
TGCAAACCGTGCGGTTTGGGAGCAGTGGGGCCACCAGCGCATCCCGCCCACTCCACGTCCACCTC
TCTACACCCCCTAGCCCCCCACCACCGCCCGCGAGCCTCCCTTCCGCTAGCCTCGTGTGACTCGT
AAATTGCCCGGGCCCCTAACCGGGACCCCCCCACGTGTGACGCACTGCAATAAATGGCAGCAGTC
AGATAATAAGCCGCCATTGCCGTCTGTTTTCGCCACAAACTTAGCTTCGATGTCTGCCAACAACA
AGCGAATTACCTTGCCCGCCCGCGTCGAGCCCAAGGTGTTCTTTG
Found at i:16830 original size:9 final size:10
Alignment explanation
Indices: 16772--16928 Score: 80
Period size: 10 Copynumber: 15.5 Consensus size: 10
16762 CTTCACCATC
16772 AACCTTCACT
1 AACCTTCACT
16782 AACC-TCACT
1 AACCTTCACT
*
16791 AACCTTACCATT
1 AACCTT--CACT
* *
16803 AGCCTTTACT
1 AACCTTCACT
16813 AACCTTCACT
1 AACCTTCACT
16823 AA-CTTCACCCACT
1 AACCTT----CACT
*
16836 AGA-CTTTACT
1 A-ACCTTCACT
16846 AACCTTCACT
1 AACCTTCACT
*
16856 AGCCTTCACTAACT
1 AACCTT--C--ACT
16870 AACCTTCACT
1 AACCTTCACT
*
16880 AACCTTCA-A
1 AACCTTCACT
16889 AACCTT---T
1 AACCTTCACT
*
16896 AAGCTTCACT
1 AACCTTCACT
*
16906 AA-CATCACT
1 AACCTTCACT
16915 AACC-TCACT
1 AACCTTCACT
16924 AACCT
1 AACCT
16929 CACCATCAAT
Statistics
Matches: 115, Mismatches: 14, Indels: 36
0.70 0.08 0.22
Matches are distributed among these distances:
7 5 0.04
9 36 0.31
10 47 0.41
12 10 0.09
13 5 0.04
14 12 0.10
ACGTcount: A:0.32, C:0.36, G:0.03, T:0.29
Consensus pattern (10 bp):
AACCTTCACT
Left flanking sequence: Indices 16272 -- 16771
CCTGTGGCTCAACTTCACGGTGATTTTGGGGTCGCTCGGGGTTGGTTTGCTCAACTTCGGTGACT
CAGTGGGTCGGATTTCTGCCGGGCTCTTTACGTTTATTGCCATGTTGACCATGGTGTATGCGTTG
GTTACCTACCACTGGCGTGCCAAGGCCATCCGTATGCGCGGGCTGGGTCCCTACGACGACCGGTT
TGGGCCTACGATGTTGTGTTTCTTCCTTCTTGTGGCGGTGGTCACCAACTTTGTGTTGAGAATCC
GCGATTAATGCATCTAATACACGATAATGAAAGTAAGGGGTAGGGGTTAGAGGGGTTGAGGGTGG
TATAGAGAGGTAGTAGTGGGTGTGGTTAGACGACGCATCCAAAAGGGGAAGAGGGGAAGAGAATG
TGTGTGCGTAAGAGAAGTAGAGGGGAAGCGGGGAGTACAGGAGACAATTGGTGGAGATTGGGCTA
TCATTGGCTACCATTGTCAACCTGGTCACACGAAACTTCACCATC
Right flanking sequence: Indices 16929 -- 17428
CACCATCAATCTCACCACCAACCCCACCACCAACCACTACTAACCTCACTACTCATCTAAAACGC
CTATGCCATTACAAACCTAAAACCAACAAACTTCACTAGCTATATCCATCCGAGATCCCGTCGTC
GTCTTCCTCCAACTGCCTCGCTCCCTCCGCGTAGTCCACCACCCCTCCGTAGCTCGGGCTGGCGT
ACACCCACCCCACGAGCGGTTGTGCGGGCGGGATGCCCATCCGCAGGAACAACGAGAACGCCTCC
ACCTCGAGCACCGCGTAGCCCTTGGGCGGCGGCAACCGCGGCGCTGCAAACGGGAGCGACGCGTA
CATCCGGAGATGGGCCCGGTCGAGAGCCACGAGGGTGTCGCGAATCCGGTAGGTGAACCGCTGGT
CGTAGGTGGCCTCGAACCGGGCCACCGCGGGCCGGTAGGGGAACCGCGCGTACACGACGTGGGTG
GTGTCTGCGAGCGCACACCACACGTCGTTGGAGGCGCGGTCGTGG
Found at i:16846 original size:33 final size:33
Alignment explanation
Indices: 16779--16887 Score: 109
Period size: 33 Copynumber: 3.3 Consensus size: 33
16769 ATCAACCTTC
* *
16779 ACTAACC-TCACTAACCTT-A-CCATTAGCCTTT
1 ACTAACCTTCACTAA-CTTCACCCACTAGACTTT
16810 ACTAACCTTCACTAACTTCACCCACTAGACTTT
1 ACTAACCTTCACTAACTTCACCCACTAGACTTT
* ** *
16843 ACTAACCTTCACTAGCCTTCACTAACTA-ACCTTC
1 ACTAACCTTCACTA-ACTTCACCCACTAGA-CTTT
16877 ACTAACCTTCA
1 ACTAACCTTCA
16888 AAACCTTTAA
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
31 10 0.15
32 8 0.12
33 25 0.37
34 24 0.36
ACGTcount: A:0.30, C:0.37, G:0.03, T:0.30
Consensus pattern (33 bp):
ACTAACCTTCACTAACTTCACCCACTAGACTTT
Left flanking sequence: Indices 16279 -- 16778
CTCAACTTCACGGTGATTTTGGGGTCGCTCGGGGTTGGTTTGCTCAACTTCGGTGACTCAGTGGG
TCGGATTTCTGCCGGGCTCTTTACGTTTATTGCCATGTTGACCATGGTGTATGCGTTGGTTACCT
ACCACTGGCGTGCCAAGGCCATCCGTATGCGCGGGCTGGGTCCCTACGACGACCGGTTTGGGCCT
ACGATGTTGTGTTTCTTCCTTCTTGTGGCGGTGGTCACCAACTTTGTGTTGAGAATCCGCGATTA
ATGCATCTAATACACGATAATGAAAGTAAGGGGTAGGGGTTAGAGGGGTTGAGGGTGGTATAGAG
AGGTAGTAGTGGGTGTGGTTAGACGACGCATCCAAAAGGGGAAGAGGGGAAGAGAATGTGTGTGC
GTAAGAGAAGTAGAGGGGAAGCGGGGAGTACAGGAGACAATTGGTGGAGATTGGGCTATCATTGG
CTACCATTGTCAACCTGGTCACACGAAACTTCACCATCAACCTTC
Right flanking sequence: Indices 16888 -- 17387
AAACCTTTAAGCTTCACTAACATCACTAACCTCACTAACCTCACCATCAATCTCACCACCAACCC
CACCACCAACCACTACTAACCTCACTACTCATCTAAAACGCCTATGCCATTACAAACCTAAAACC
AACAAACTTCACTAGCTATATCCATCCGAGATCCCGTCGTCGTCTTCCTCCAACTGCCTCGCTCC
CTCCGCGTAGTCCACCACCCCTCCGTAGCTCGGGCTGGCGTACACCCACCCCACGAGCGGTTGTG
CGGGCGGGATGCCCATCCGCAGGAACAACGAGAACGCCTCCACCTCGAGCACCGCGTAGCCCTTG
GGCGGCGGCAACCGCGGCGCTGCAAACGGGAGCGACGCGTACATCCGGAGATGGGCCCGGTCGAG
AGCCACGAGGGTGTCGCGAATCCGGTAGGTGAACCGCTGGTCGTAGGTGGCCTCGAACCGGGCCA
CCGCGGGCCGGTAGGGGAACCGCGCGTACACGACGTGGGTGGTGT
Found at i:16875 original size:14 final size:14
Alignment explanation
Indices: 16853--16882 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
16843 ACTAACCTTC
*
16853 ACTAGCCTTCACTA
1 ACTAACCTTCACTA
16867 ACTAACCTTCACTA
1 ACTAACCTTCACTA
16881 AC
1 AC
16883 CTTCAAAACC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.33, C:0.37, G:0.03, T:0.27
Consensus pattern (14 bp):
ACTAACCTTCACTA
Left flanking sequence: Indices 16353 -- 16852
TGCCGGGCTCTTTACGTTTATTGCCATGTTGACCATGGTGTATGCGTTGGTTACCTACCACTGGC
GTGCCAAGGCCATCCGTATGCGCGGGCTGGGTCCCTACGACGACCGGTTTGGGCCTACGATGTTG
TGTTTCTTCCTTCTTGTGGCGGTGGTCACCAACTTTGTGTTGAGAATCCGCGATTAATGCATCTA
ATACACGATAATGAAAGTAAGGGGTAGGGGTTAGAGGGGTTGAGGGTGGTATAGAGAGGTAGTAG
TGGGTGTGGTTAGACGACGCATCCAAAAGGGGAAGAGGGGAAGAGAATGTGTGTGCGTAAGAGAA
GTAGAGGGGAAGCGGGGAGTACAGGAGACAATTGGTGGAGATTGGGCTATCATTGGCTACCATTG
TCAACCTGGTCACACGAAACTTCACCATCAACCTTCACTAACCTCACTAACCTTACCATTAGCCT
TTACTAACCTTCACTAACTTCACCCACTAGACTTTACTAACCTTC
Right flanking sequence: Indices 16883 -- 17382
CTTCAAAACCTTTAAGCTTCACTAACATCACTAACCTCACTAACCTCACCATCAATCTCACCACC
AACCCCACCACCAACCACTACTAACCTCACTACTCATCTAAAACGCCTATGCCATTACAAACCTA
AAACCAACAAACTTCACTAGCTATATCCATCCGAGATCCCGTCGTCGTCTTCCTCCAACTGCCTC
GCTCCCTCCGCGTAGTCCACCACCCCTCCGTAGCTCGGGCTGGCGTACACCCACCCCACGAGCGG
TTGTGCGGGCGGGATGCCCATCCGCAGGAACAACGAGAACGCCTCCACCTCGAGCACCGCGTAGC
CCTTGGGCGGCGGCAACCGCGGCGCTGCAAACGGGAGCGACGCGTACATCCGGAGATGGGCCCGG
TCGAGAGCCACGAGGGTGTCGCGAATCCGGTAGGTGAACCGCTGGTCGTAGGTGGCCTCGAACCG
GGCCACCGCGGGCCGGTAGGGGAACCGCGCGTACACGACGTGGGT
Found at i:16929 original size:9 final size:9
Alignment explanation
Indices: 16901--16931 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
16891 CCTTTAAGCT
*
16901 TCACTAACA
1 TCACTAACC
16910 TCACTAACC
1 TCACTAACC
16919 TCACTAACC
1 TCACTAACC
16928 TCAC
1 TCAC
16932 CATCAATCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.35, C:0.42, G:0.00, T:0.23
Consensus pattern (9 bp):
TCACTAACC
Left flanking sequence: Indices 16401 -- 16900
GGTTACCTACCACTGGCGTGCCAAGGCCATCCGTATGCGCGGGCTGGGTCCCTACGACGACCGGT
TTGGGCCTACGATGTTGTGTTTCTTCCTTCTTGTGGCGGTGGTCACCAACTTTGTGTTGAGAATC
CGCGATTAATGCATCTAATACACGATAATGAAAGTAAGGGGTAGGGGTTAGAGGGGTTGAGGGTG
GTATAGAGAGGTAGTAGTGGGTGTGGTTAGACGACGCATCCAAAAGGGGAAGAGGGGAAGAGAAT
GTGTGTGCGTAAGAGAAGTAGAGGGGAAGCGGGGAGTACAGGAGACAATTGGTGGAGATTGGGCT
ATCATTGGCTACCATTGTCAACCTGGTCACACGAAACTTCACCATCAACCTTCACTAACCTCACT
AACCTTACCATTAGCCTTTACTAACCTTCACTAACTTCACCCACTAGACTTTACTAACCTTCACT
AGCCTTCACTAACTAACCTTCACTAACCTTCAAAACCTTTAAGCT
Right flanking sequence: Indices 16932 -- 17431
CATCAATCTCACCACCAACCCCACCACCAACCACTACTAACCTCACTACTCATCTAAAACGCCTA
TGCCATTACAAACCTAAAACCAACAAACTTCACTAGCTATATCCATCCGAGATCCCGTCGTCGTC
TTCCTCCAACTGCCTCGCTCCCTCCGCGTAGTCCACCACCCCTCCGTAGCTCGGGCTGGCGTACA
CCCACCCCACGAGCGGTTGTGCGGGCGGGATGCCCATCCGCAGGAACAACGAGAACGCCTCCACC
TCGAGCACCGCGTAGCCCTTGGGCGGCGGCAACCGCGGCGCTGCAAACGGGAGCGACGCGTACAT
CCGGAGATGGGCCCGGTCGAGAGCCACGAGGGTGTCGCGAATCCGGTAGGTGAACCGCTGGTCGT
AGGTGGCCTCGAACCGGGCCACCGCGGGCCGGTAGGGGAACCGCGCGTACACGACGTGGGTGGTG
TCTGCGAGCGCACACCACACGTCGTTGGAGGCGCGGTCGTGGTAC
Found at i:18625 original size:50 final size:50
Alignment explanation
Indices: 18345--18668 Score: 169
Period size: 49 Copynumber: 6.7 Consensus size: 50
18335 CTAACTGTCT
** *
18345 TTCTGTCATGCATTCAATCGCTACCGTTCTGTATTTATCCCTCTGATCATCTCCTTG
1 TTCTGTCATGC-TTC-ATCGCTA-C-TTCTGTAACTAT-TCTCTGATC-T-TCCTTG
* *
18402 TTCTGTCATG-TTCATCGCTACTTCTGTAACTATTCT-TG-T-TTCTTTC
1 TTCTGTCATGCTTCATCGCTACTTCTGTAACTATTCTCTGATCTTCCTTG
* * * * *
18448 CTCAGCCATGCTTC--CGCTACTTCTGTAACTA--C-C-CAACTGTCCTTG
1 TTCTGTCATGCTTCATCGCTACTTCTGTAACTATTCTCTGATCT-TCCTTG
* * *
18493 TTCTGACATGTCTTCATTGGCTACGTTCTGTAACTA-TC-CTTATC-T-CTTG
1 TTCTGTCATG-CTTCA-TCGCTAC-TTCTGTAACTATTCTCTGATCTTCCTTG
*
18542 TTCTGTCATGCTTTCATTCGCTAC--CAT-T-CCTATTCTCTGATCATTCCTTG
1 TTCTGTCATGC-TTCA-TCGCTACTTC-TGTAACTATTCTCTGATC-TTCCTTG
*
18592 TTCTGTCATG-TTCATCGCTACTTCTGCAACTATTC-CTG-TC-T-C---
1 TTCTGTCATGCTTCATCGCTACTTCTGTAACTATTCTCTGATCTTCCTTG
* *
18634 TTCTGTCATGCTTCATTGCTACTTTCCGTAACTAT
1 TTCTGTCATGCTTCATCGCTAC-TTCTGTAACTAT
18669 CTGTCTCCTG
Statistics
Matches: 215, Mismatches: 27, Indels: 63
0.70 0.09 0.21
Matches are distributed among these distances:
42 10 0.05
43 11 0.05
44 11 0.05
45 32 0.15
46 20 0.09
47 17 0.08
48 8 0.04
49 35 0.16
50 34 0.16
51 4 0.02
52 12 0.06
53 1 0.00
54 7 0.03
55 3 0.01
57 10 0.05
ACGTcount: A:0.15, C:0.29, G:0.12, T:0.44
Consensus pattern (50 bp):
TTCTGTCATGCTTCATCGCTACTTCTGTAACTATTCTCTGATCTTCCTTG
Left flanking sequence: Indices 17845 -- 18344
CCAAACCAATAGTTAACAAAACACAGCATATGAATGGATCGAGTTATGTCTCTCTACCTACTTCT
CCCTAGCCTAATTATTCACAAAAGTGCCCGCTCAATACGGTACCCTCACACGGACTTATCACAAT
CTTTTCTATCACGTACCCGGAAACTAGTCTACTATCAACTCTAAAAGAACTGTTGAAAGCCTCTC
ATGACGGTAGTACAATCACAAGCGTTTCATTAAAGTAAACCTGTGGATTAAACGTCCTACAATGT
CAATCCAGAGTTCTGTAGCTTTTCCTCTAACTGTCTCTTTCCACTTGTCATACGCTTACGTTCTG
TAATCATCCCTCTAACTGTTTCCGTTCGCCTCAGTCATACTTTCATTCGCTACGTCCTGTAACTA
TTCAATTGACTCTGCTTCTGTCAAGCTTTCACTCGCTACCCTTCTATAACTGTCCTCCCGGTTGT
CACGCTTTCATTCGCTACCGTTTTCTTCTATTCCTCTAACTGTCT
Right flanking sequence: Indices 18669 -- 19168
CTGTCTCCTGACATGCTTTCTGTGACTGTCCTGTCTCTTGCCATGCTGCTACCGTCCTATTCTAT
TCCTTGATGATGATGCCCCCGCCAGGGAGACCCTGCCGCCGCAGCGTGCGGTCCGGGTGGTCCAA
CGCAAGCGCGGTGTCATGAGCATCCGGCGGCATCCGCCGCATCTCGTCGTACACCACCGCCTCCG
CAGGCAAGTAGCCCCCGTTGGTGCCGTCCACAAGCGCCATCCGCACCTTGGCCATCGCGTCCTTC
CCGATGCCCAACCGCCGGCCCAACCGCGCACGGGTGTCCTCAAGCAGCTCGTCGGGGTACACGGG
CACCACGAACGGCACCCCGTGCGCGTAGGCCACGTTCTTGTGGAAGTGGAACACCGGAATCACGT
TGACCTCGTGCGCGTGGGTGGTCGCGAGTTCGAGTTCCGCGGCCACCTCGGGGTTTTTCTCGGGG
CCGGCGGCGGGCCCGAACCGGGTGTACAAGTCGTTGTTGGCAAGC
Found at i:18673 original size:42 final size:42
Alignment explanation
Indices: 18592--18675 Score: 109
Period size: 42 Copynumber: 2.0 Consensus size: 42
18582 TCATTCCTTG
*
18592 TTCTGTCATGTTCATCGCTACTTCTGCAACTATTCCTGTCTC
1 TTCTGTCATGTTCATCGCTACTTCCGCAACTATTCCTGTCTC
* *
18634 TTCTGTCATGCTTCATTGCTACTTTCCGTAACTA-T-CTGTCTC
1 TTCTGTCATG-TTCATCGCTAC-TTCCGCAACTATTCCTGTCTC
18676 CTGACATGCT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
42 17 0.46
43 11 0.30
44 9 0.24
ACGTcount: A:0.14, C:0.30, G:0.12, T:0.44
Consensus pattern (42 bp):
TTCTGTCATGTTCATCGCTACTTCCGCAACTATTCCTGTCTC
Left flanking sequence: Indices 18092 -- 18591
CGTCCTACAATGTCAATCCAGAGTTCTGTAGCTTTTCCTCTAACTGTCTCTTTCCACTTGTCATA
CGCTTACGTTCTGTAATCATCCCTCTAACTGTTTCCGTTCGCCTCAGTCATACTTTCATTCGCTA
CGTCCTGTAACTATTCAATTGACTCTGCTTCTGTCAAGCTTTCACTCGCTACCCTTCTATAACTG
TCCTCCCGGTTGTCACGCTTTCATTCGCTACCGTTTTCTTCTATTCCTCTAACTGTCTTTCTGTC
ATGCATTCAATCGCTACCGTTCTGTATTTATCCCTCTGATCATCTCCTTGTTCTGTCATGTTCAT
CGCTACTTCTGTAACTATTCTTGTTTCTTTCCTCAGCCATGCTTCCGCTACTTCTGTAACTACCC
AACTGTCCTTGTTCTGACATGTCTTCATTGGCTACGTTCTGTAACTATCCTTATCTCTTGTTCTG
TCATGCTTTCATTCGCTACCATTCCTATTCTCTGATCATTCCTTG
Right flanking sequence: Indices 18676 -- 19175
CTGACATGCTTTCTGTGACTGTCCTGTCTCTTGCCATGCTGCTACCGTCCTATTCTATTCCTTGA
TGATGATGCCCCCGCCAGGGAGACCCTGCCGCCGCAGCGTGCGGTCCGGGTGGTCCAACGCAAGC
GCGGTGTCATGAGCATCCGGCGGCATCCGCCGCATCTCGTCGTACACCACCGCCTCCGCAGGCAA
GTAGCCCCCGTTGGTGCCGTCCACAAGCGCCATCCGCACCTTGGCCATCGCGTCCTTCCCGATGC
CCAACCGCCGGCCCAACCGCGCACGGGTGTCCTCAAGCAGCTCGTCGGGGTACACGGGCACCACG
AACGGCACCCCGTGCGCGTAGGCCACGTTCTTGTGGAAGTGGAACACCGGAATCACGTTGACCTC
GTGCGCGTGGGTGGTCGCGAGTTCGAGTTCCGCGGCCACCTCGGGGTTTTTCTCGGGGCCGGCGG
CGGGCCCGAACCGGGTGTACAAGTCGTTGTTGGCAAGCACCGCCA
Found at i:22637 original size:10 final size:10
Alignment explanation
Indices: 22622--22670 Score: 62
Period size: 10 Copynumber: 4.7 Consensus size: 10
22612 GTGCCATTGA
22622 GTGGGTGGTG
1 GTGGGTGGTG
*
22632 GTGGGTGTTG
1 GTGGGTGGTG
22642 GTGGGTGGTG
1 GTGGGTGGTG
*
22652 GTGTGATGGTG
1 GTG-GGTGGTG
22663 GTGCGGTG
1 GTG-GGTG
22671 TTGCTCACAG
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
10 21 0.64
11 12 0.36
ACGTcount: A:0.02, C:0.02, G:0.63, T:0.33
Consensus pattern (10 bp):
GTGGGTGGTG
Left flanking sequence: Indices 22122 -- 22621
GCCACTCGGTGGACCCACACCGGAACCGGGGGCCTCGGACCTTCTCGGGCAAGTCGGCCCACGCC
ACGTCCCACAGGCAGTGGGCAGAGTCGAGCACGGGGTAGTCGGGGGTGGGTTTGAGATACCGAGA
GGCCATGGCCTCCGGGTCGTTGGCCGGCGGCCGGTCGTTCTCAGTCATGGTAGTGGGGTTGGTAA
AGGCAACGATCTAGGTGCGGATGCAGGACGGTGGGTGGGATAAGGTGGGGGACACGGGTGGAGTG
TGGGTGGGTGTGGGTGATTGTAGGGTGGTTAGGGAGTGTAGTGGTAGGATGGTGGTGGGATAGTG
GTGTGTTATGGGTGTGTGTGTGTGGATGGGTGGTGGTTGGTGGGTGGTTTACGGTGGTTGTTGCT
TGCGCATAGCGCAATGTAGACCCACGGGGTGGTGGGGAGACGCGGAGAGGTGGTTGTGGGGGTTG
GTAGGGGGTGTTGGAGTGTGTGGAAGGCGGTGGTGGTGCCATTGA
Right flanking sequence: Indices 22671 -- 23170
TTGCTCACAGTGGCAAATGAGAGAGTGGGACAGGGAAGTGGGATGAGAAGGGAATAGGGGATTGC
GTGGGGGTTGGGGGATTGTGTGAGGATTAGGGTGGGTGAGTGCTAGAGGGTATTTAGTGGGTAGT
GTTGTTTGTGGGTGTGGGTGGTGTAAAACCGTGACACCGGGTGATGGTTTTGGTGGTGGGTGTGG
AAATCGCGATGGGTGGAGAGATCGCAGTGGTTAGAGAGGTTGCAATGGTTAGAGAGATTGCTATG
GTTAGAGAGGTTGCGATGTTTGGAGAGTCCGGAGCTTACGGAGTGGTTGTGGCTCGGTGCTGTAA
TCAAGTAGGTAATTTCGTCTCGTGGTGTCTCCTGTAGGACATACCCACTACACGCCACCTTTCTC
TACTGTTACCAATGCCACGTCCATTCTGTCCTCTAGTACCCCACAACCCCTTATTCTCTTTGTGT
CCATCGTGACTCCACATTTTTCAGCGTGATGTCACACTAGGTACA
Found at i:22919 original size:16 final size:18
Alignment explanation
Indices: 22881--22944 Score: 83
Period size: 18 Copynumber: 3.6 Consensus size: 18
22871 GCGATGGGTG
* *
22881 GAGAGATCGCAGTGGTTA
1 GAGAGATTGCAATGGTTA
*
22899 GAGAGGTTGCAATGGTTA
1 GAGAGATTGCAATGGTTA
*
22917 GAGAGATTGCTATGGTTA
1 GAGAGATTGCAATGGTTA
*
22935 GAGAGGTTGC
1 GAGAGATTGC
22945 GATGTTTGGA
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 40 1.00
ACGTcount: A:0.27, C:0.08, G:0.39, T:0.27
Consensus pattern (18 bp):
GAGAGATTGCAATGGTTA
Left flanking sequence: Indices 22381 -- 22880
GTGGGTGGGTGTGGGTGATTGTAGGGTGGTTAGGGAGTGTAGTGGTAGGATGGTGGTGGGATAGT
GGTGTGTTATGGGTGTGTGTGTGTGGATGGGTGGTGGTTGGTGGGTGGTTTACGGTGGTTGTTGC
TTGCGCATAGCGCAATGTAGACCCACGGGGTGGTGGGGAGACGCGGAGAGGTGGTTGTGGGGGTT
GGTAGGGGGTGTTGGAGTGTGTGGAAGGCGGTGGTGGTGCCATTGAGTGGGTGGTGGTGGGTGTT
GGTGGGTGGTGGTGTGATGGTGGTGCGGTGTTGCTCACAGTGGCAAATGAGAGAGTGGGACAGGG
AAGTGGGATGAGAAGGGAATAGGGGATTGCGTGGGGGTTGGGGGATTGTGTGAGGATTAGGGTGG
GTGAGTGCTAGAGGGTATTTAGTGGGTAGTGTTGTTTGTGGGTGTGGGTGGTGTAAAACCGTGAC
ACCGGGTGATGGTTTTGGTGGTGGGTGTGGAAATCGCGATGGGTG
Right flanking sequence: Indices 22945 -- 23444
GATGTTTGGAGAGTCCGGAGCTTACGGAGTGGTTGTGGCTCGGTGCTGTAATCAAGTAGGTAATT
TCGTCTCGTGGTGTCTCCTGTAGGACATACCCACTACACGCCACCTTTCTCTACTGTTACCAATG
CCACGTCCATTCTGTCCTCTAGTACCCCACAACCCCTTATTCTCTTTGTGTCCATCGTGACTCCA
CATTTTTCAGCGTGATGTCACACTAGGTACAAAGCGAGGTGGTACGAGGGATTGCGAGCCATCTC
CTACTTCAGCTCTTGTCTCCTCTGAATCCACCACATCTCTATGCTCACTACTGCTCCACAACCCA
TCACCGTTACTCAGACTACACTATCTACGTCTCTAACCTCCACCCACCAGAGTACAAACTCACCT
AAATAACACCGACCAAATCACACCGGACCACCAAACACCCAACCACACCCTTTCTCCCCTTTTCC
CCACCACCCTTCTCTCTTTCCACACCCCATCCCTGTCACCTTCAC
Found at i:22957 original size:18 final size:18
Alignment explanation
Indices: 22893--22944 Score: 86
Period size: 18 Copynumber: 2.9 Consensus size: 18
22883 GAGATCGCAG
22893 TGGTTAGAGAGGTTGCAA
1 TGGTTAGAGAGGTTGCAA
* *
22911 TGGTTAGAGAGATTGCTA
1 TGGTTAGAGAGGTTGCAA
22929 TGGTTAGAGAGGTTGC
1 TGGTTAGAGAGGTTGC
22945 GATGTTTGGA
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.25, C:0.06, G:0.38, T:0.31
Consensus pattern (18 bp):
TGGTTAGAGAGGTTGCAA
Left flanking sequence: Indices 22393 -- 22892
GGGTGATTGTAGGGTGGTTAGGGAGTGTAGTGGTAGGATGGTGGTGGGATAGTGGTGTGTTATGG
GTGTGTGTGTGTGGATGGGTGGTGGTTGGTGGGTGGTTTACGGTGGTTGTTGCTTGCGCATAGCG
CAATGTAGACCCACGGGGTGGTGGGGAGACGCGGAGAGGTGGTTGTGGGGGTTGGTAGGGGGTGT
TGGAGTGTGTGGAAGGCGGTGGTGGTGCCATTGAGTGGGTGGTGGTGGGTGTTGGTGGGTGGTGG
TGTGATGGTGGTGCGGTGTTGCTCACAGTGGCAAATGAGAGAGTGGGACAGGGAAGTGGGATGAG
AAGGGAATAGGGGATTGCGTGGGGGTTGGGGGATTGTGTGAGGATTAGGGTGGGTGAGTGCTAGA
GGGTATTTAGTGGGTAGTGTTGTTTGTGGGTGTGGGTGGTGTAAAACCGTGACACCGGGTGATGG
TTTTGGTGGTGGGTGTGGAAATCGCGATGGGTGGAGAGATCGCAG
Right flanking sequence: Indices 22945 -- 23444
GATGTTTGGAGAGTCCGGAGCTTACGGAGTGGTTGTGGCTCGGTGCTGTAATCAAGTAGGTAATT
TCGTCTCGTGGTGTCTCCTGTAGGACATACCCACTACACGCCACCTTTCTCTACTGTTACCAATG
CCACGTCCATTCTGTCCTCTAGTACCCCACAACCCCTTATTCTCTTTGTGTCCATCGTGACTCCA
CATTTTTCAGCGTGATGTCACACTAGGTACAAAGCGAGGTGGTACGAGGGATTGCGAGCCATCTC
CTACTTCAGCTCTTGTCTCCTCTGAATCCACCACATCTCTATGCTCACTACTGCTCCACAACCCA
TCACCGTTACTCAGACTACACTATCTACGTCTCTAACCTCCACCCACCAGAGTACAAACTCACCT
AAATAACACCGACCAAATCACACCGGACCACCAAACACCCAACCACACCCTTTCTCCCCTTTTCC
CCACCACCCTTCTCTCTTTCCACACCCCATCCCTGTCACCTTCAC
Found at i:22957 original size:36 final size:36
Alignment explanation
Indices: 22874--22957 Score: 107
Period size: 36 Copynumber: 2.3 Consensus size: 36
22864 GGAAATCGCG
*
22874 ATGGGTGGAGAGATCGCAGTGGTTAGAGAGGTTGCA
1 ATGGTTGGAGAGATCGCAGTGGTTAGAGAGGTTGCA
* * *
22910 ATGGTTAGAGAGATTGCTA-TGGTTAGAGAGGTTGCG
1 ATGGTTGGAGAGATCGC-AGTGGTTAGAGAGGTTGCA
*
22946 ATGTTTGGAGAG
1 ATGGTTGGAGAG
22958 TCCGGAGCTT
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
36 40 0.98
37 1 0.02
ACGTcount: A:0.25, C:0.06, G:0.42, T:0.27
Consensus pattern (36 bp):
ATGGTTGGAGAGATCGCAGTGGTTAGAGAGGTTGCA
Left flanking sequence: Indices 22374 -- 22873
GTGGAGTGTGGGTGGGTGTGGGTGATTGTAGGGTGGTTAGGGAGTGTAGTGGTAGGATGGTGGTG
GGATAGTGGTGTGTTATGGGTGTGTGTGTGTGGATGGGTGGTGGTTGGTGGGTGGTTTACGGTGG
TTGTTGCTTGCGCATAGCGCAATGTAGACCCACGGGGTGGTGGGGAGACGCGGAGAGGTGGTTGT
GGGGGTTGGTAGGGGGTGTTGGAGTGTGTGGAAGGCGGTGGTGGTGCCATTGAGTGGGTGGTGGT
GGGTGTTGGTGGGTGGTGGTGTGATGGTGGTGCGGTGTTGCTCACAGTGGCAAATGAGAGAGTGG
GACAGGGAAGTGGGATGAGAAGGGAATAGGGGATTGCGTGGGGGTTGGGGGATTGTGTGAGGATT
AGGGTGGGTGAGTGCTAGAGGGTATTTAGTGGGTAGTGTTGTTTGTGGGTGTGGGTGGTGTAAAA
CCGTGACACCGGGTGATGGTTTTGGTGGTGGGTGTGGAAATCGCG
Right flanking sequence: Indices 22958 -- 23457
TCCGGAGCTTACGGAGTGGTTGTGGCTCGGTGCTGTAATCAAGTAGGTAATTTCGTCTCGTGGTG
TCTCCTGTAGGACATACCCACTACACGCCACCTTTCTCTACTGTTACCAATGCCACGTCCATTCT
GTCCTCTAGTACCCCACAACCCCTTATTCTCTTTGTGTCCATCGTGACTCCACATTTTTCAGCGT
GATGTCACACTAGGTACAAAGCGAGGTGGTACGAGGGATTGCGAGCCATCTCCTACTTCAGCTCT
TGTCTCCTCTGAATCCACCACATCTCTATGCTCACTACTGCTCCACAACCCATCACCGTTACTCA
GACTACACTATCTACGTCTCTAACCTCCACCCACCAGAGTACAAACTCACCTAAATAACACCGAC
CAAATCACACCGGACCACCAAACACCCAACCACACCCTTTCTCCCCTTTTCCCCACCACCCTTCT
CTCTTTCCACACCCCATCCCTGTCACCTTCACCTGTACTACCCTA
Found at i:24491 original size:24 final size:24
Alignment explanation
Indices: 24464--24539 Score: 80
Period size: 24 Copynumber: 3.2 Consensus size: 24
24454 GAAGCTACTC
*
24464 GACCATCGCTCGTAACCAGCCTTT
1 GACCATCGCTCGTAACCAGCATTT
* * * *
24488 GACCCTTGCTCGTAACCGGGATTT
1 GACCATCGCTCGTAACCAGCATTT
* **
24512 GACCATCGTTCGTAACCAGTGTTT
1 GACCATCGCTCGTAACCAGCATTT
24536 GACC
1 GACC
24540 GCTTGCAGCC
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
24 41 1.00
ACGTcount: A:0.20, C:0.32, G:0.21, T:0.28
Consensus pattern (24 bp):
GACCATCGCTCGTAACCAGCATTT
Left flanking sequence: Indices 23964 -- 24463
GATTTGAGCGAGCTCGAGCCCGAACACCCGCTGCTGCCCCACAACCAGGCCGAGACGCAGTACGT
GGTGATCTGCGAGGGCAAGCTGGAGAAGCACGTGTACAAGGCGGCCCAGGAGATGCGTACCTACA
TCAAGCACACCCACCACGAGCTCCCCCGGATCGAGGGGGTGGTGGCTCTGGCCCTCTCGCCCAAA
CAGCGCAGACGGATGCTCCGCCGGGCCCGCAAGGGGCCCATGGCCACCGACAACGACTACGGGAT
GCTGGCGAACCTGTGGGTGGTGGCGCGTATCCAGGGGCTCGAGATCCACATGCTCACGGGCCCCC
GGCGGCGCGAGCTTGTGTTGGAGGAGATGTTCTGCCGTGACGAGGACAAGCTGCGGTGGGCAGGG
GCGGAGCTGGTGGCCGAGAGCGACGATATCTTCAGCGGGATCCGCCGCTACCACACCCGAGCCGC
GGGAGCCCGTGGAGTGGGGTCGCTTGGCTCCATTCGAAGCTACTC
Right flanking sequence: Indices 24540 -- 25039
GCTTGCAGCCAGTACTCGACCATCGCTCGCAACCACGGGCCAGAGATCGCGGCCGGGTTTGCCCA
CGACTGGGACGCGGCCATCGAGCGGGCCACCGCGGCGCTCGCCCGCAACCCGTGCCAGCAGACGC
TCGCCACGCTCACCGCCGCCGTCTACGGCAAGCACTCGCGGTTGGGTGTCCACCAGGACCCCTCG
CACGACCTCACCGGGCTCATGACCGCGGCCATCGACGCGCTGGCCCGGACCAGCGACAAGCTGTT
TGCGGACGCGCTCTTGGCGCAGACCGCCGAGGCCGTGACCCACTTGTTCCGGTTCCAGCAGCCCA
ACTTGGTGGTGGACTCTCCCGAGATGGTGTGGTTGCTTGTGCGCATGTGCTACCAGGCCCGGGCT
CATGACCCGGTGATGCTGCGTGCGGTGAGCCAGGTGATCTCGGGCGAGGCCCCGCTCGACCAGCG
GCGGTTCCGCGGCACCACCAACGTCGCCGTCAACCGGCTCCGGGA
Found at i:37279 original size:15 final size:14
Alignment explanation
Indices: 37261--37315 Score: 74
Period size: 15 Copynumber: 3.7 Consensus size: 14
37251 CAATTGTAGC
37261 CTCTCCATCCGCCAT
1 CTCTCCATCCG-CAT
37276 CTCTCCATCCGTCAT
1 CTCTCCATCCG-CAT
*
37291 CTCTCCATCCGCAGC
1 CTCTCCATCCGCA-T
37306 CTCTCCATCC
1 CTCTCCATCC
37316 CCGGCAGCTT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
14 2 0.05
15 35 0.95
ACGTcount: A:0.13, C:0.53, G:0.07, T:0.27
Consensus pattern (14 bp):
CTCTCCATCCGCAT
Left flanking sequence: Indices 36761 -- 37260
GTCAGAGGGCTGAATGAAGCGCTCTCGTTTGACAACGCAGGCGTCTCTACCTCATTCAAATGGGT
GCCTTGTGAGGTTACTGAACCAGAAAAGCTCCCACGGGTCGCCAGTAAACGGCCTCCAACGCGAG
TAGCCAGTGGGCCCCAACGCACACCAGAACCCAGAGGACGCCAGCCAGACGGTGTGTCCCGACTA
CTTCGCGGTATCTCCCGACTGCTCCACAGGGTCCTAGTGCTGGAAACACGCGAGAAACTCTTGAC
TGAACCAGTCGCACGGTATGCTAAGCTACTAGAGCGACTTGCTCTTATACTCAGAGAGCCCCGGC
GTCCCAGCAGCGCTTTCAGAACGGTGTTCAAACTCAGGGTTGTGATTGGAGTTGAGTCGTTGCCA
TACGTACTGAACATCAACCCTGTTACCAGTGGCAGCATAGCCAGCTCACCCGAAACTTCCGCATC
CAGCATAGCCTCTACATCCATTGTAACCTCCTCGTCAATTGTAGC
Right flanking sequence: Indices 37316 -- 37815
CCGGCAGCTTCGTTATCAGAACCATTTCCGTCTCTATCTTCTGAATTCTCCATTTCTGCCTCGTC
CAGGTCTCCAATGGGCTCCTCGCCGTCATCACCTGCTGGTTCCCCCATCATGCCATCCGTACCGT
TTCCCACAGTGGTCTCAATCGCCCAGGACGTTAAACTACCCTCTTCTGCTGCCACTAAACCACTA
AACCCTGTGGAGCTTGCAAGTGAAAATGTAGACTCTGAGTCAGACGAATTTCTTAGGCGAGTGCT
CTCCACCATCTCGATGCTTGAAGCCAACGGGGTCAATACTCCGCTGTGAATGGTCGTGGAGGAGG
CATTGTTCGAAGTAGATGTAAGTGACTTGGATATTTCAACGTTAATGACGGGACTGTATGACTCC
GTCGTCACGTTGTCTCGCTGGACCAGTGAAGAGAAGCTTTCATCCAGTATTCCGAGTTCCTGGGA
ATCCACAGTGCTCAATAATGCGGTGGTGGAGTTCGGTGGTGTCAG
Found at i:41316 original size:12 final size:12
Alignment explanation
Indices: 41288--41334 Score: 85
Period size: 12 Copynumber: 3.8 Consensus size: 12
41278 CAAGTATAAG
41288 CGACTCGTTTGCC
1 CGACTCGTTT-CC
41301 CGACTCGTTTCC
1 CGACTCGTTTCC
41313 CGACTCGTTTCC
1 CGACTCGTTTCC
41325 CGACTCGTTT
1 CGACTCGTTT
41335 GCCAACCGAT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
12 24 0.71
13 10 0.29
ACGTcount: A:0.09, C:0.38, G:0.19, T:0.34
Consensus pattern (12 bp):
CGACTCGTTTCC
Left flanking sequence: Indices 40788 -- 41287
ACTTGAACCAGCCAAAACAAAAATTTTCAGAAACAGCTACTTGGCTTAGTCGTTTCGAGCGCGCA
AGTGGTTTAGTGGTAAAATCCAACGTTGCCATCGTTGGGCCCCTGGTTCGATTCCGGGCTTGCGC
ATATTTTTTGATTTTTACAAACTTTCTGTTTTATTTTTTTACGCTGTGGGCTCCTTGTTAACTTG
TTACTCTCTCGATGTCCATTCTCTCGGTGTGGCATTCCCGATTGCCTGCCGGAACATCTTCGCTG
CCGTACCAAAGTGCCGTGCATATTTTGCCAGGGATTGCTTAGTAACTCCGATTGAGAGCTACTCT
TGGCTTTGTCTGTCGGGTGCTTCGCCAGGGCACAATACACGATTGTCATTGCGGATTCCACCCCC
ATCAACCACCTCATTTCTCACTTCTTACACATCACACCACTATTCAGGGGCGTACGGCCCCAATT
GTCATGCGGGGCAGCAAGGAGAGGGGATTTCGATTCAAGTATAAG
Right flanking sequence: Indices 41335 -- 41834
GCCAACCGATCCAGCGTTTGTGGTGCTGAAGCTTGTAGCCCCACGCAGAGGCTGAACAAGTCCCA
GCTCTCCAACTAGAGGCCTCATTAGCACGCTATCGTTAGCGCTTGCATATCTGATTCGAAAAACT
ACATCCGAGATCGCCGAATGGCCCTATTGTTCTTCCGCAATTATTCCGCAATTGTTCCGTACCCC
ACATTTCGCGGAGCTCTGGTGGGCCGGCCCGACCGCTACAAACCCGTAGAATTGCGCTATAAAAG
CCCGTAGAATTGCTAGCAACCCCAATGAAGTTTGCGTGGCTTTATCTGTCGCTAGCAGCTGCAGC
GGCGATCTCTAAAAATGCCAGTTCTCCTCTGGCTGCTCCCACTCTTCGTGATGAGTGGACGGTTG
GGGTGGCCCAATTGCCCAACATCAAGAACGAGCTGGCCGTGGACGCCAACGCCGAGGCCCTGGGG
TACCGGCTTGTCAACATGAGCACCACAGCCACCGGATTGAAGGGG
Found at i:44468 original size:8 final size:8
Alignment explanation
Indices: 44443--44476 Score: 52
Period size: 8 Copynumber: 4.2 Consensus size: 8
44433 GAACGTAGGT
44443 GGTGACAG
1 GGTGACAG
44451 GGTGTA-AG
1 GGTG-ACAG
44459 GGTGACAG
1 GGTGACAG
44467 GGTGACAG
1 GGTGACAG
44475 GG
1 GG
44477 GTAAAAGGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
7 1 0.04
8 22 0.92
9 1 0.04
ACGTcount: A:0.24, C:0.09, G:0.53, T:0.15
Consensus pattern (8 bp):
GGTGACAG
Left flanking sequence: Indices 43943 -- 44442
CTCCCACGAGAAGATCGAGGGAGGCTCCAAGAACCACACCCTCGAGGCCCCGCTCGGGCACATCC
CCGTCCACGTGCGTGGTGGCTACGTGCTTCCCCTCCAGGAGCCGGGCTACACCACCCGCGAGTCC
CGCCAGAACGACTTCTCGTTGCTTGTGGCCCTAGACGACCAGGGTAGGGCGCAGGGCGAGTTGTA
CTGGGACGACGGCGAAAGCGTGCGTCCCAGCGCCACCCTCTGGGTCGACTTTACCGCCGCCAACC
GTTCTTTGGTCGCGGTGCCCGAGGGGAGGTTTAATGTTTCGCAGCCATTGGCCAATATTACCGTT
TTGGGATGCGACAAGCCGAAGCAGGTGAGGTTTAACGACAAGCGGGTACCGTACAAGTTTGAGAA
CCACACGTTGGTGGTGCACGGGCTCCAGAATTACACGGGGGCGGGGGCGTGGTCCCAGCAGTTTG
TGCTTGAATACTGAAGATACCAATATATGAGGAAAGAACGTAGGT
Right flanking sequence: Indices 44477 -- 44976
GTAAAAGGGTGATAACAGGAGTGACAGTGTGGTAATGGTGTGGTGAAGGTGTGGTGACTATGCTA
CATAACCACACACGCTTAGGGGTAACCAACAGACTGTTGGCTCCCATATACCAGGTTATGCATCT
GACCAAATACGAAGCCGTCTAACAAGGAAGTAGTTACAGGATGTGAACCTTAGTAGGTTACACAA
TCTACATCCTGGATATTGCTACACCATATAGAATCAGTCTTCCGACTATTGGGACTCCCATCTAA
TTCCATCACCGTATTTCGTACCCTTCGATTTGAGTAAGAAATCCACCATGGCAAGAACGATTGGA
AAACTCCCAACGGTGCCTTCGGCCCCTTGGCTTCTGACTCCGAGATCGGGTCTCAAGTCGGGTTT
CAACACAAATGATAAGCACTCTCAACCGTGGCAATACGCTAATACCTAGAAAGCATCCTCCACCA
ACTAGTGACCAGGTTAATGACCTGGATAGCACTACAATTCAACAT
Found at i:45282 original size:8 final size:9
Alignment explanation
Indices: 45260--45290 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
45250 TAAGTAAAGA
45260 GGTGACAGC
1 GGTGACAGC
45269 GGTGACAG-
1 GGTGACAGC
45277 GGTGACAGC
1 GGTGACAGC
45286 GGTGA
1 GGTGA
45291 GGTGACACCC
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.38
9 13 0.62
ACGTcount: A:0.23, C:0.16, G:0.48, T:0.13
Consensus pattern (9 bp):
GGTGACAGC
Left flanking sequence: Indices 44760 -- 45259
TTCGATTTGAGTAAGAAATCCACCATGGCAAGAACGATTGGAAAACTCCCAACGGTGCCTTCGGC
CCCTTGGCTTCTGACTCCGAGATCGGGTCTCAAGTCGGGTTTCAACACAAATGATAAGCACTCTC
AACCGTGGCAATACGCTAATACCTAGAAAGCATCCTCCACCAACTAGTGACCAGGTTAATGACCT
GGATAGCACTACAATTCAACATGGTCTATCATGTGAAAAGGTCAGGGAGGGAACCGTCAAGATAC
CACAACCCTGGACAATCGACCGCGCAGGTGACACTGACAGTCAATAATCTACATTCGTCAACGAT
CGTAAGCTCGTCTCAAAACATCAGACAGTAATGATGAACACCAATCCGTGTTACTACTTGGAAAT
GTGGATAAGAGCTGATGGCCTTGTTGAAATGACCAAGAGCAGAAAGCAAAGGTAACCGTTGACCT
GGAAAGCACTACTTTTCACGATACAGATATGAGACTAAGTAAAGA
Right flanking sequence: Indices 45291 -- 45790
GGTGACACCCCGGTGATACCCCGGTGACATTGCGGTGACTGAGTGCTACATAAACCACCATTAAC
GACTACCAAGACTACTTAGTGTTGGCTCCCATATACCTGGTTATGCACCTAACCAAATACGGTAG
CCATCTAACTACGAGGTAGTTACAGGAATGTAAACCTTAATCGGTTACATAAGCTACATTCCTGA
ATATTGTCAAAACTATATAGAACAGAGTCTCCCGACTATTGGGAGATCTATCTAATTCCATACCG
CATTTCGTACCCTTCGATCTGAGTAAGAAATCCACCATGGCTAAGAACGACAAGAAATTCTCCAA
CGGCTCCTTCGGTGCCTTGGCTAACGACCCTGAAGTCAGGTCGCAACACTTAGCCTAACCACTTT
CTCCATTTCCTCGTCGATGCTTGGCTAAAAAAGAGCCAGCAACGGAGAACGTCCAACCCACCAGG
GCACACACCGGCACACACTGGCCACCACCGCAGCCCACCTACAGC
Found at i:45793 original size:10 final size:10
Alignment explanation
Indices: 45780--45811 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
45770 CCACCGCAGC
45780 CCACCTACAG
1 CCACCTACAG
45790 CCACCTACAG
1 CCACCTACAG
*
45800 CCACCAACAG
1 CCACCTACAG
45810 CC
1 CC
45812 TCCCCCCCTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.31, C:0.53, G:0.09, T:0.06
Consensus pattern (10 bp):
CCACCTACAG
Left flanking sequence: Indices 45280 -- 45779
GACAGCGGTGAGGTGACACCCCGGTGATACCCCGGTGACATTGCGGTGACTGAGTGCTACATAAA
CCACCATTAACGACTACCAAGACTACTTAGTGTTGGCTCCCATATACCTGGTTATGCACCTAACC
AAATACGGTAGCCATCTAACTACGAGGTAGTTACAGGAATGTAAACCTTAATCGGTTACATAAGC
TACATTCCTGAATATTGTCAAAACTATATAGAACAGAGTCTCCCGACTATTGGGAGATCTATCTA
ATTCCATACCGCATTTCGTACCCTTCGATCTGAGTAAGAAATCCACCATGGCTAAGAACGACAAG
AAATTCTCCAACGGCTCCTTCGGTGCCTTGGCTAACGACCCTGAAGTCAGGTCGCAACACTTAGC
CTAACCACTTTCTCCATTTCCTCGTCGATGCTTGGCTAAAAAAGAGCCAGCAACGGAGAACGTCC
AACCCACCAGGGCACACACCGGCACACACTGGCCACCACCGCAGC
Right flanking sequence: Indices 45812 -- 46311
TCCCCCCCTCAAAGCCGCTGCGCCCGGCTACTGCGCCCGAACCGCCTGCGGCTCCTGGTGCTTTA
GATCTCGTGATTCTCTGCGTCTGCCTGAAACGCTGAGCCAGCAGAAAAGCTCTTGCTGCGACCAA
CGCTACCTCTATGGCCTCCACACCACTACACCCCCACTAAACCACACACCATTGCTCTTCTTCCA
CCACTCACTTCCTTTCTCCTTCCTCCTCCTTCCTCCTCCCTCTCCTCCTTCTCTTCCTCTCCCCC
TCCTCCTTCCTCCTCCGGTCTGCTTCCCTCCGAGCAAGGCGTGCCCCGCAGTACTGCACACAGCC
CGACTATCTCACCACTATAAAGTACCCCCCATTAAGCTTCTGGCCAATTGCTCACCCACTATCCC
CTTTGGCCAGCTCTCTACACCCAATTGGCATGTCTGACTTGATCAAAGGAGCGTTGCAGCTCGAC
CCGTGGTTGGAGCCCTACTCGAAGCCCCTCGAGGCCCGCCAGACC
Found at i:46035 original size:3 final size:3
Alignment explanation
Indices: 46022--46087 Score: 55
Period size: 3 Copynumber: 21.3 Consensus size: 3
46012 CACTTCCTTT
* *
46022 CTC CTTC CTC CTC CTTC CTC CTC C-C TCTC CTC CTT CTC TTC CT- CTC
1 CTC C-TC CTC CTC C-TC CTC CTC CTC -CTC CTC CTC CTC CTC CTC CTC
*
46068 CCC CTC CTC CTTC CTC CTC C
1 CTC CTC CTC C-TC CTC CTC C
46088 GGTCTGCTTC
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
2 3 0.06
3 38 0.75
4 10 0.20
ACGTcount: A:0.00, C:0.62, G:0.00, T:0.38
Consensus pattern (3 bp):
CTC
Left flanking sequence: Indices 45522 -- 46021
TATTGGGAGATCTATCTAATTCCATACCGCATTTCGTACCCTTCGATCTGAGTAAGAAATCCACC
ATGGCTAAGAACGACAAGAAATTCTCCAACGGCTCCTTCGGTGCCTTGGCTAACGACCCTGAAGT
CAGGTCGCAACACTTAGCCTAACCACTTTCTCCATTTCCTCGTCGATGCTTGGCTAAAAAAGAGC
CAGCAACGGAGAACGTCCAACCCACCAGGGCACACACCGGCACACACTGGCCACCACCGCAGCCC
ACCTACAGCCACCTACAGCCACCAACAGCCTCCCCCCCTCAAAGCCGCTGCGCCCGGCTACTGCG
CCCGAACCGCCTGCGGCTCCTGGTGCTTTAGATCTCGTGATTCTCTGCGTCTGCCTGAAACGCTG
AGCCAGCAGAAAAGCTCTTGCTGCGACCAACGCTACCTCTATGGCCTCCACACCACTACACCCCC
ACTAAACCACACACCATTGCTCTTCTTCCACCACTCACTTCCTTT
Right flanking sequence: Indices 46088 -- 46587
GGTCTGCTTCCCTCCGAGCAAGGCGTGCCCCGCAGTACTGCACACAGCCCGACTATCTCACCACT
ATAAAGTACCCCCCATTAAGCTTCTGGCCAATTGCTCACCCACTATCCCCTTTGGCCAGCTCTCT
ACACCCAATTGGCATGTCTGACTTGATCAAAGGAGCGTTGCAGCTCGACCCGTGGTTGGAGCCCT
ACTCGAAGCCCCTCGAGGCCCGCCAGACCACCTTCCGGGCCACCCTCGACGAGCTCAACCAGTCC
GAGGGGCTGCTTGCCCAGTTTGCCGACTCCTACAAGCGGTACGGGGTGCACGCAGACCCCTCGGG
CTCTGTGCAGGCGGCGTTGTATGTGCCCGGGGTCACCCTGGTGGCCCTCGTGGGCGACTTCAACC
AGTGGGACCCCGAGGCCCACCCGTTGCAGCCCGCCAACGACTTTGGGTTGTGGACGTTGACGATC
CCGGCCCACCACGGCGAGTGCGTGATTGCGCACGACCTGCGGTAC
Found at i:48613 original size:20 final size:19
Alignment explanation
Indices: 48590--48672 Score: 78
Period size: 20 Copynumber: 4.2 Consensus size: 19
48580 TTGTGGATGT
*
48590 GGTGGACTAGTGGTGGTTCA
1 GGTGGACTAGTAGTGGTT-A
* *
48610 GGTGGACTAGTATTGGTTGT
1 GGTGGACTAGTAGTGGTT-A
*
48630 GGTGGACTAGTCGTGGTTA
1 GGTGGACTAGTAGTGGTTA
*
48649 TGGTGG-CTAGTAATGGTTTA
1 -GGTGGACTAGTAGTGG-TTA
48669 GGTG
1 GGTG
48673 ACACTGGTGA
Statistics
Matches: 52, Mismatches: 9, Indels: 5
0.79 0.14 0.08
Matches are distributed among these distances:
19 12 0.23
20 40 0.77
ACGTcount: A:0.16, C:0.07, G:0.42, T:0.35
Consensus pattern (19 bp):
GGTGGACTAGTAGTGGTTA
Left flanking sequence: Indices 48090 -- 48589
GGACTACAAGATTGGCATTGACGAGCCGGGCGAGTACCGGGTGGTGTTGGACCTGGACCGCGAGG
AGTACGGGGGCCACGCGCGGGTGGACGACGCCCAGCGGGTGTTTACGTCGCCCGAGCCGTGGAAC
GACCGGAGAAACTCGGCGATGGTGTATATTCCGTGCCGGACGGTGATTGTGTTGGCGAGAAAGGA
AGAGTGAGGCAATAGAAGCCAGCGTAGACTGGGCAATATACCGACGAAGCTACCATGACACAAGT
CACGATCAATGGGTTCTCCGATCCGTAGGACGCAAAACGTTAATTTTATTTAGATAATTAACGGG
AAAATGAAAGGGACGAGGGGGATCGATAGATTTCCACAAGTGGGATTTCTATAAGGGGTAGACGT
TGACAAATACAACGTAAGAACTAGGTTCCAGGAATATGGGCTTGCGACCATCTGTGTGGTTTGTG
GAACTAGAGTGAATTTGGTACTAGTGATGCTTTGGTTGTGGATGT
Right flanking sequence: Indices 48673 -- 49172
ACACTGGTGAGCTGGTGGTGAGCTGTTACTGACTAAACTGGTGGTTTACGCTGCCTCGTTTGGCT
AGCTGCACACGACGCTAGCCGGCCAACCATTAAGCTAGGAATATGATATGACAACACGCTAGCAT
TGTGAGCTCAGCATAGTGAAGCGTTTCTAGATCACTTTGAAATGATCTCAGAGGTCAAACCACCA
ATCTCAAAATCTCAAAATAATTTTGAATCACCTCTCCCGAAGTCAACCTTTACTCAAATGTCCAT
GTAACAAAATTGGCCAGCAGCCGGTATGGAGGAAGATTTATGTGTGAAGAAGATATTGCAAGCAA
CTAGCGATAGTACGGAAAATATTCGTACGTAGGTCATTTAAGTTATTTTCCTCCAGTACATTCGA
AAATTTTACGCAAAGAATTTTATTTGGTTCAGCTGTGTATCTCAAGAGATTAAGTTGAAGTTGGC
GAGAGTAAACGCCTGTGTGATACTTCGTAGTAACCCGTAAATGTA
Found at i:48646 original size:40 final size:39
Alignment explanation
Indices: 48587--48666 Score: 117
Period size: 40 Copynumber: 2.0 Consensus size: 39
48577 TGGTTGTGGA
* *
48587 TGTGGTGGACTAGTGGTGGTTCA-GGTGGACTAGTATTGGT
1 TGTGGTGGACTAGTCGTGGTT-ATGGTGG-CTAGTAATGGT
48627 TGTGGTGGACTAGTCGTGGTTATGGTGGCTAGTAATGGT
1 TGTGGTGGACTAGTCGTGGTTATGGTGGCTAGTAATGGT
48666 T
1 T
48667 TAGGTGACAC
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
39 12 0.32
40 25 0.68
ACGTcount: A:0.15, C:0.07, G:0.41, T:0.36
Consensus pattern (39 bp):
TGTGGTGGACTAGTCGTGGTTATGGTGGCTAGTAATGGT
Left flanking sequence: Indices 48087 -- 48586
TCCGGACTACAAGATTGGCATTGACGAGCCGGGCGAGTACCGGGTGGTGTTGGACCTGGACCGCG
AGGAGTACGGGGGCCACGCGCGGGTGGACGACGCCCAGCGGGTGTTTACGTCGCCCGAGCCGTGG
AACGACCGGAGAAACTCGGCGATGGTGTATATTCCGTGCCGGACGGTGATTGTGTTGGCGAGAAA
GGAAGAGTGAGGCAATAGAAGCCAGCGTAGACTGGGCAATATACCGACGAAGCTACCATGACACA
AGTCACGATCAATGGGTTCTCCGATCCGTAGGACGCAAAACGTTAATTTTATTTAGATAATTAAC
GGGAAAATGAAAGGGACGAGGGGGATCGATAGATTTCCACAAGTGGGATTTCTATAAGGGGTAGA
CGTTGACAAATACAACGTAAGAACTAGGTTCCAGGAATATGGGCTTGCGACCATCTGTGTGGTTT
GTGGAACTAGAGTGAATTTGGTACTAGTGATGCTTTGGTTGTGGA
Right flanking sequence: Indices 48667 -- 49166
TAGGTGACACTGGTGAGCTGGTGGTGAGCTGTTACTGACTAAACTGGTGGTTTACGCTGCCTCGT
TTGGCTAGCTGCACACGACGCTAGCCGGCCAACCATTAAGCTAGGAATATGATATGACAACACGC
TAGCATTGTGAGCTCAGCATAGTGAAGCGTTTCTAGATCACTTTGAAATGATCTCAGAGGTCAAA
CCACCAATCTCAAAATCTCAAAATAATTTTGAATCACCTCTCCCGAAGTCAACCTTTACTCAAAT
GTCCATGTAACAAAATTGGCCAGCAGCCGGTATGGAGGAAGATTTATGTGTGAAGAAGATATTGC
AAGCAACTAGCGATAGTACGGAAAATATTCGTACGTAGGTCATTTAAGTTATTTTCCTCCAGTAC
ATTCGAAAATTTTACGCAAAGAATTTTATTTGGTTCAGCTGTGTATCTCAAGAGATTAAGTTGAA
GTTGGCGAGAGTAAACGCCTGTGTGATACTTCGTAGTAACCCGTA
Found at i:49531 original size:10 final size:10
Alignment explanation
Indices: 49516--49564 Score: 64
Period size: 10 Copynumber: 5.0 Consensus size: 10
49506 AACAAACCAA
*
49516 TGCTTGTGCC
1 TGCTTGAGCC
*
49526 TGCTTGTGCC
1 TGCTTGAGCC
49536 TGCTTGAGCC
1 TGCTTGAGCC
49546 TGCTT-AGCC
1 TGCTTGAGCC
*
49555 TGCTTCAGCC
1 TGCTTGAGCC
49565 CATGTCCCTC
Statistics
Matches: 37, Mismatches: 1, Indels: 2
0.93 0.03 0.05
Matches are distributed among these distances:
9 9 0.24
10 28 0.76
ACGTcount: A:0.06, C:0.33, G:0.27, T:0.35
Consensus pattern (10 bp):
TGCTTGAGCC
Left flanking sequence: Indices 49016 -- 49515
ATATTCGTACGTAGGTCATTTAAGTTATTTTCCTCCAGTACATTCGAAAATTTTACGCAAAGAAT
TTTATTTGGTTCAGCTGTGTATCTCAAGAGATTAAGTTGAAGTTGGCGAGAGTAAACGCCTGTGT
GATACTTCGTAGTAACCCGTAAATGTACGAGTGGATTTCACTAACATTACGGGTGGTATTCGCTT
GTAACTATACCCCGCTTGTCTAAAACAAACTCACAAGGGAATTGACTATATAGCCTTCGTATGAC
CATAAATCTCGAACGCCTATCACGTTAACCTAACGGATCATTCATACTGGCTAAACCCAGACTCT
CATATTCCCCGTCGTATTAGCACAAGATCAAGGCAGCCAATACTCACGCTCTGCCTGTAGTAGAC
TATCCATTGATTCAGTGAACAGATAAACAAATGCTGAAAAAGAATCACTGCCACCCCCCACTTCG
CCTAGCCCTCCTCAGCATCCCACCCGCTGGGTTTCAACAAACCAA
Right flanking sequence: Indices 49565 -- 50064
CATGTCCCTCTGCCCCCTTCCGAGATCAGCAACCAATGCACGGGCGCCCCGGTGACAGACAACGG
TTCGGGTCTCCGGAGATCCTTTTCGTTGCTTTTTGGATCTAATGCCGGCCGGTTTTCGCACTGGT
GGGGCACCTCTGGTGGTGGTGGTGCTCGTAAGGCCCCTCTCCAGGCATATAACCCAACAACAGCA
ACAACAAAAGCCACCCTGGCCAGCAAAAATCCCACTGGGCCACCGCTGCCACCTCTACCAGCTGA
AGATCGTCCGAACGCGATTTCGACCATCTCGTATTTTTGACAGCCACCACCAGGCAACCATCGGG
TCTCAAGGCAAAGGCCTCCTCCACCGCCAACGGACGACATCTCCAGCAACCCCTAATTTTTCCAC
GGCAAGCGGAAGCGATTCCCCACCGCCCGTGGCCCCCAGAAAGGGTGACTGGAAGCGGGCCCGTG
GAGAGCTGCATCTAGCCCGGGCCCTGGAGCGATCATCTGGCCCGG
Found at i:50062 original size:25 final size:27
Alignment explanation
Indices: 50010--50064 Score: 69
Period size: 25 Copynumber: 2.1 Consensus size: 27
50000 TGACTGGAAG
*
50010 CGGGCCCGTGGAGAGCTGCATCTAGCC
1 CGGGCCCGTGGAGAGATGCATCTAGCC
* *
50037 CGGGCCC-TGGAGCGAT-CATCTGGCC
1 CGGGCCCGTGGAGAGATGCATCTAGCC
50062 CGG
1 CGG
50065 TCGACCTCTA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 11 0.44
26 7 0.28
27 7 0.28
ACGTcount: A:0.13, C:0.35, G:0.38, T:0.15
Consensus pattern (27 bp):
CGGGCCCGTGGAGAGATGCATCTAGCC
Left flanking sequence: Indices 49510 -- 50009
AACCAATGCTTGTGCCTGCTTGTGCCTGCTTGAGCCTGCTTAGCCTGCTTCAGCCCATGTCCCTC
TGCCCCCTTCCGAGATCAGCAACCAATGCACGGGCGCCCCGGTGACAGACAACGGTTCGGGTCTC
CGGAGATCCTTTTCGTTGCTTTTTGGATCTAATGCCGGCCGGTTTTCGCACTGGTGGGGCACCTC
TGGTGGTGGTGGTGCTCGTAAGGCCCCTCTCCAGGCATATAACCCAACAACAGCAACAACAAAAG
CCACCCTGGCCAGCAAAAATCCCACTGGGCCACCGCTGCCACCTCTACCAGCTGAAGATCGTCCG
AACGCGATTTCGACCATCTCGTATTTTTGACAGCCACCACCAGGCAACCATCGGGTCTCAAGGCA
AAGGCCTCCTCCACCGCCAACGGACGACATCTCCAGCAACCCCTAATTTTTCCACGGCAAGCGGA
AGCGATTCCCCACCGCCCGTGGCCCCCAGAAAGGGTGACTGGAAG
Right flanking sequence: Indices 50065 -- 50564
TCGACCTCTAAAAAAGACACCACCAACCCAGCACAACCCACCACCCACAAAGCACCCAAAATGCA
CCCCAAAGGCACCTCCACTGGGTTCCCTGGTCGTCTGCGATGGCTTCGAAGATTTGCCCGATGCC
CGACACCGGAAATCCCAAACAAAAACCCCGACAGAAATTACCACAAGTGTCGGAGCTGTGGGACA
CACACGCACGGGGCCCAAACCCAGCCAGGACCGCCAACCAGCGAGCCACCGCGTCCCAACCCCGC
CCCAACCCCCCTCAACCACCCTGCCCGCTTGCTGTTCCCGTTTCGCCCCTCCAGCCCCGACAATC
GTACAATTGCCCGCCAACAGGATTTTCAGACACCCGGCACCAACCACGACAACCGTAGGCGACGG
AATCGCGTGAGAAGTCGCGGGGATCACCGCTGGCGCCACCTACTACTCCCCAGGGCCGTCCTACG
GGCAGGTGGACCCCCCAAGGGGGGCTCGCTTCGGTGCAACGTCAC
Found at i:52887 original size:21 final size:20
Alignment explanation
Indices: 52862--52907 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 20
52852 CCGGGGCGGA
52862 CCCGGGCTCGTGGCAGCTGG
1 CCCGGGCTCGTGGCAGCTGG
*
52882 CGCCGGGCTCGTGGCAGTTGG
1 C-CCGGGCTCGTGGCAGCTGG
52903 CCCGG
1 CCCGG
52908 CTGCTCTTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 5 0.21
21 19 0.79
ACGTcount: A:0.04, C:0.35, G:0.46, T:0.15
Consensus pattern (20 bp):
CCCGGGCTCGTGGCAGCTGG
Left flanking sequence: Indices 52362 -- 52861
CCCCTCTTTGGGCGCGTCGTCCCCGACTTGGCGCTATACGACGACACCAACATGCTCTTGCACCT
GGTGCTCTGTGTGCTGCTGGTGGCACACGCGCGCCGCACCCCCGACCCGTCGTCGGTGCCGCTCC
GGTACTACCACCAGGCGATCCAGCTGATCCGCCACCAGTTGGCGGCCCCGGGCGTCGAGCAGCTG
AGCCACGGCGTGATCGCCCGCTGCTTGTTGCTGACGGTGTTCCTCTGCATCTACGAGATGTTCTT
TGTGGCGGTGGACCTGACCTATGTGCGCGGGGCCCTGACCATCCTCCTGCTGATCTTGGCGCGCA
AACCGCGGGGCGTGCTTGCGGAGCTGCCCCTCTACTACGCGTGCTTCGTCGTCATTCTCGCCTGC
GACGCCTACCGCGGCCTCCTGTGTGACGCCCCCCCCATGTTCAGTGTGCCCCGGTTCTGGGCCCC
GTTGGACCCCCAGTTTTTCGCGCGGTTGGCGGACCCCGGGGCGGA
Right flanking sequence: Indices 52908 -- 53407
CTGCTCTTGTTGTTGCTGGCGGCCACCGAGCTCCGGTGGCGGCCCGGGTGTCTCTCGCAGCCCGA
GCACCAGGCCAACCAGCCGCTAGCCGAGTGGCGGCGGTTGGTGGCCCGCACCGACGCCGTGGTCC
GGGCGTCAGTGCCCCCAACCATCTACACCTGGGCCAGCGACCAGCGGTACCCCGTGGTGTATTTC
GGGCTGGCGACGGCGGCGATGGCGTGGATCAACGTCCAGGTGGTGCGGGTGCTTCTCTACGAGAC
GCTCGCCACGCGGCCGCCGCGGGACGACGGGGGGGTCGACCACGAGCTCGCCCAGTACCTGGGGG
ACTATGCAGGACGGGTGTGTCGGGAGGTGGTGGGGGTGGTGCGGACGTACGAGGGCAACCGCGCG
CTCTGGCAGGCACTGGTGCACTGTCTCCGGTTTGTGGCGGCGCGGTTGGACCCCGACGAGGCCCA
GGAGTTGTTGGCGGCGGTGGAGGCGGCGCTGGGGCTGTTTTAGCG
Found at i:54907 original size:8 final size:8
Alignment explanation
Indices: 54894--54936 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
54884 ACACTTCTCC
*
54894 ATAATACG
1 ATAATATG
54902 ATAATATG
1 ATAATATG
54910 ATAATATG
1 ATAATATG
* *
54918 ATAACACG
1 ATAATATG
*
54926 ACAATATG
1 ATAATATG
54934 ATA
1 ATA
54937 TTAGGCGTAT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
8 28 1.00
ACGTcount: A:0.51, C:0.09, G:0.12, T:0.28
Consensus pattern (8 bp):
ATAATATG
Left flanking sequence: Indices 54394 -- 54893
GGGAAAATTCTAGAATTTCTCCACCACGAATTACCCCTTAGTTTATATTGTGATGGGTTGACATA
CACTCGTGCCTGAGTTTACCTCTTGGCGACTACCATGTTGGTTACCACCTGTTTCTATCAAATGG
TACGGGTCACAGCAGTACGCAGTCAGCGAACCAGGCCCTCTACATAACCACGGACCTGCCATCTA
ATGTAGATATGCCTTATTACTTAACTGAACTCAACATATGATCCACTACTGGTTTATTCCGAAGT
TTCAACGCTCATTACTCCAGGTCGTTACAACACTCACTACCCGTGTCGTTACAGACAGCGCCACA
GTACCGTGAGTTAGGCCATCTACGAGCTATTCGGACTATAAGTGATTATGAGGCAACAATAAGAA
CTCTCAACCAGGCTGATAAGCACTCCCGTGGCTCCTCCTTGGCTGATACGCAATACCTGGAGAGT
TCCTCTACAAACTAATGATCAGGTACCACTGACCAACACTTCTCC
Right flanking sequence: Indices 54937 -- 55436
TTAGGCGTATTTTTGCTATATCGTCACCAATTGTCTCATCCGCCAGTGGCTACTAACTCCATTAG
CCACCACTTCCCCACTTTCAGAATTTTTGCAACCGCCCAGGAGCCCAAACAGGCAACCCGATCCA
GCAACCCCAGAGCAACCCATCCTTCGCAACCCAACTCGTGTCGACTGGCCGCCCAACCTTCTCTC
CCCACACGCCCCAACAACTCTCCCCGCAAAGATCTCAAAAGCAATTTTAGTCTCCAGCCACCCGA
TGTGGTGAATAATCCGTCAACGTCAAGGCGGTGGTGAGCATAGGGTCTGGTGAAAAAGTCTGAAG
CCACAAGGGTACTGTTAGCACTAGCACTATTAGCAGTATAGCACAATAGCACTATTAGCACTCTA
GGTCGACTCTACTTTACCTCTAGTTGGACTTTTTTGACCTACTTTGCCTCTACTTTACTTCTCCG
TATAGCCTTCCACACCCCTCCCCATTCGTCTTCTACTCCTTTTCC
Found at i:55305 original size:17 final size:18
Alignment explanation
Indices: 55283--55323 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
55273 CTGTTAGCAC
* *
55283 TAGCACTATTAGCAGTA-
1 TAGCACTAATAGCACTAT
55300 TAGCAC-AATAGCACTAT
1 TAGCACTAATAGCACTAT
55317 TAGCACT
1 TAGCACT
55324 CTAGGTCGAC
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.27
Consensus pattern (18 bp):
TAGCACTAATAGCACTAT
Left flanking sequence: Indices 54783 -- 55282
ACTCTCAACCAGGCTGATAAGCACTCCCGTGGCTCCTCCTTGGCTGATACGCAATACCTGGAGAG
TTCCTCTACAAACTAATGATCAGGTACCACTGACCAACACTTCTCCATAATACGATAATATGATA
ATATGATAACACGACAATATGATATTAGGCGTATTTTTGCTATATCGTCACCAATTGTCTCATCC
GCCAGTGGCTACTAACTCCATTAGCCACCACTTCCCCACTTTCAGAATTTTTGCAACCGCCCAGG
AGCCCAAACAGGCAACCCGATCCAGCAACCCCAGAGCAACCCATCCTTCGCAACCCAACTCGTGT
CGACTGGCCGCCCAACCTTCTCTCCCCACACGCCCCAACAACTCTCCCCGCAAAGATCTCAAAAG
CAATTTTAGTCTCCAGCCACCCGATGTGGTGAATAATCCGTCAACGTCAAGGCGGTGGTGAGCAT
AGGGTCTGGTGAAAAAGTCTGAAGCCACAAGGGTACTGTTAGCAC
Right flanking sequence: Indices 55324 -- 55823
CTAGGTCGACTCTACTTTACCTCTAGTTGGACTTTTTTGACCTACTTTGCCTCTACTTTACTTCT
CCGTATAGCCTTCCACACCCCTCCCCATTCGTCTTCTACTCCTTTTCCTCAACCTCCGTCTTCTC
CTGTCCCACGACTTTTTCGTGTCGTGTCGTTTCAGACATGCCCGGCTAGCCAGAAATGGCCGGGT
TTGTGCCTTGTTCGCCTATTCCGTCAAGGTTAGAGTTAAGCTTTTGTGTCACAAAGAAGATCGTC
GAAGCGGAGGAACCGACGGCCACCGTGGGCCCCACCGGCGGTGGCGCCCGCTCTACGCGTGGGGA
GGCCTCGTCTGCCACTGTGGACGGCGTTTCCGACACTCCTGTCCCGTGCTGTCCCGTCCCGCCCC
ATGATTCTGTGCCTGATCCCCCGGATCGACGTCGCCTCGTCCGACTAAGGCGGAGAAGAGAACAA
AGAGAAGAGAGAGAGAAAAGAGAAGAACAGAACAGGGAGAAAAAA
Found at i:55322 original size:9 final size:9
Alignment explanation
Indices: 55283--55323 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
55273 CTGTTAGCAC
55283 TAGCACTAT
1 TAGCACTAT
*
55292 TAGCAGTA-
1 TAGCACTAT
*
55300 TAGCAC-AA
1 TAGCACTAT
55308 TAGCACTAT
1 TAGCACTAT
55317 TAGCACT
1 TAGCACT
55324 CTAGGTCGAC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
7 1 0.04
8 11 0.41
9 15 0.56
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.27
Consensus pattern (9 bp):
TAGCACTAT
Left flanking sequence: Indices 54783 -- 55282
ACTCTCAACCAGGCTGATAAGCACTCCCGTGGCTCCTCCTTGGCTGATACGCAATACCTGGAGAG
TTCCTCTACAAACTAATGATCAGGTACCACTGACCAACACTTCTCCATAATACGATAATATGATA
ATATGATAACACGACAATATGATATTAGGCGTATTTTTGCTATATCGTCACCAATTGTCTCATCC
GCCAGTGGCTACTAACTCCATTAGCCACCACTTCCCCACTTTCAGAATTTTTGCAACCGCCCAGG
AGCCCAAACAGGCAACCCGATCCAGCAACCCCAGAGCAACCCATCCTTCGCAACCCAACTCGTGT
CGACTGGCCGCCCAACCTTCTCTCCCCACACGCCCCAACAACTCTCCCCGCAAAGATCTCAAAAG
CAATTTTAGTCTCCAGCCACCCGATGTGGTGAATAATCCGTCAACGTCAAGGCGGTGGTGAGCAT
AGGGTCTGGTGAAAAAGTCTGAAGCCACAAGGGTACTGTTAGCAC
Right flanking sequence: Indices 55324 -- 55823
CTAGGTCGACTCTACTTTACCTCTAGTTGGACTTTTTTGACCTACTTTGCCTCTACTTTACTTCT
CCGTATAGCCTTCCACACCCCTCCCCATTCGTCTTCTACTCCTTTTCCTCAACCTCCGTCTTCTC
CTGTCCCACGACTTTTTCGTGTCGTGTCGTTTCAGACATGCCCGGCTAGCCAGAAATGGCCGGGT
TTGTGCCTTGTTCGCCTATTCCGTCAAGGTTAGAGTTAAGCTTTTGTGTCACAAAGAAGATCGTC
GAAGCGGAGGAACCGACGGCCACCGTGGGCCCCACCGGCGGTGGCGCCCGCTCTACGCGTGGGGA
GGCCTCGTCTGCCACTGTGGACGGCGTTTCCGACACTCCTGTCCCGTGCTGTCCCGTCCCGCCCC
ATGATTCTGTGCCTGATCCCCCGGATCGACGTCGCCTCGTCCGACTAAGGCGGAGAAGAGAACAA
AGAGAAGAGAGAGAGAAAAGAGAAGAACAGAACAGGGAGAAAAAA
Found at i:56332 original size:11 final size:11
Alignment explanation
Indices: 56316--56363 Score: 60
Period size: 11 Copynumber: 4.3 Consensus size: 11
56306 TAGACCACGA
56316 ACAATAGCCTC
1 ACAATAGCCTC
56327 ACAATAGCCTC
1 ACAATAGCCTC
*
56338 ACAATGGCCCTC
1 ACAATAG-CCTC
* *
56350 AAAATAGCCAC
1 ACAATAGCCTC
56361 ACA
1 ACA
56364 TATCACACAC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
11 22 0.71
12 9 0.29
ACGTcount: A:0.40, C:0.35, G:0.10, T:0.15
Consensus pattern (11 bp):
ACAATAGCCTC
Left flanking sequence: Indices 55816 -- 56315
AGAAAAAAAACTGAGAGTACAGAGAACAGAGAATTGGCCATGTGAGTCGCCAAAGGCCTCAAAGG
TTGTGAAAATAAGTGGGAGTGTGTAGAAGTATGCCTAAGAAGAAGTGGAAAAAGTGGAAAAAGTA
AGGTATGCCAGGGAGAAAGTAAGTAAATGTGTGAGTAGAGAAGTGAAGAGTCACACAAACCCGAT
TTCCAGTGAAAAAACCACGAACCTGTGCCATTTACGGCCTTTGATGACGAGCCCTGAGATAAACC
CGATCGATCACTGTGCAGCTACTGTACAGGACGCAAACAAAGCTTAGAGAAAGACGGGTCGGAAC
AAGACCAGAAGACGACCTAGGAGACGACCCAGAAAACGGTAAAAAGGCCTATAGAAACGGACTAG
ACAGTATGACCTAAGAAAAATCATCAACGTGCCCAAAACGACCCCAGTAGACGAGATTTCGTGCT
CAAGGTGCCCAGTGTCTCAGGTCGTCTCAAAGGACTAGACCACGA
Right flanking sequence: Indices 56364 -- 56595
TATCACACACAATACCACTCGACAATGCCCCAATAACCACTACGAATCTATAAACAGCAACCCGG
TTGCAACCCGGTTGGCGGGACAACCACCGGGATAAGCCAACGAGGAAGTGCTCTTAACCGGGCGT
GTTTTACAGTCGTTACATAATTATTCGGAATAAGAAAATTCCGGAAGTCCAAAAATGCACTCAAA
AATAACTATTTGAAGGTCGAAGTATAAGTTACGTATG
Done.