Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: C7579

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500

Length: 2022
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33


Found at i:71 original size:24 final size:23

Alignment explanation


    Indices: 16--77  Score: 65
    Period size: 24  Copynumber: 2.7  Consensus size: 23

          6 TATTTTTATT

                                *   
         16 TTATTTATATTC-TTTTATTTATA
          1 TTATTTATA-TCATTTTATTAATA

             *                       
         39 TAATCTTATATCATTTTATTAATGA
          1 TTAT-TTATATCATTTTATTAAT-A

                           
         64 TTATTTATAT-ATTT
          1 TTATTTATATCATTT

         78 CTTATTTTAT


Statistics
Matches: 33,  Mismatches: 3, Indels: 6
        0.79            0.07        0.14

Matches are distributed among these distances:
  23    9  0.27
  24   20  0.61
  25    4  0.12

ACGTcount: A:0.31, C:0.05, G:0.02, T:0.63


Consensus pattern (23 bp):   
TTATTTATATCATTTTATTAATA

Left flanking sequence: Indices 1 -- 15
TTATTTATTTTTATT


Right flanking sequence: Indices 78 -- 577
CTTATTTTATTTAATGAGTTAAACTGGAATCGAACCAATATAAATTGTTTAAAAGACAATTGTCT
TAACCGTTAGACTATTAACTCTTTATATATTTATAGTTAAATATATATATTTATTTAATAATCTT
ATTAAATGCCTACGTCGAGAGTCGAACTCGCAACCATCGCGCTTCAAGCGAATGCTTTACCAATT
AAGCTACAAAGGCACATTTATATATACAGTATTTTAGCTTATATATCCCTCCGACATTGTCGGAG
AGTATTAAGCTACAAAGGCACATTATTTCATAAAATACTACAAGAGTAAGTAGAATCGAACTACT
ATCACATGTGTTGAAGACACGTGCTTTACCATTAAGCTATACTCTTAATATAGATATAAATATAT
CTATTATATATAAATAAGTTATATAGGAATCGAACCTATGTCTCGGATGTGTAAGATCCACGATC
TAACCGTTAATCTAATAACTTTTATAATATATATATATAATCATC



Found at i:791 original size:14 final size:14

Alignment explanation


    Indices: 772--801  Score: 51
    Period size: 14  Copynumber: 2.1  Consensus size: 14

        762 TATGATTTAT

                          
        772 ATATATATAAATAA
          1 ATATATATAAATAA

                     *    
        786 ATATATATATATAA
          1 ATATATATAAATAA

              
        800 AT
          1 AT

        802 TATTTATTTG


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40


Consensus pattern (14 bp):   
ATATATATAAATAA

Left flanking sequence: Indices 272 -- 771
TAAGCTACAAAGGCACATTTATATATACAGTATTTTAGCTTATATATCCCTCCGACATTGTCGGA
GAGTATTAAGCTACAAAGGCACATTATTTCATAAAATACTACAAGAGTAAGTAGAATCGAACTAC
TATCACATGTGTTGAAGACACGTGCTTTACCATTAAGCTATACTCTTAATATAGATATAAATATA
TCTATTATATATAAATAAGTTATATAGGAATCGAACCTATGTCTCGGATGTGTAAGATCCACGAT
CTAACCGTTAATCTAATAACTTTTATAATATATATATATAATCATCAGGATTACCCTGTTAGGAA
TCGAACCTAAATGATTACTTTAGAAGAGTAATGTTCTACCATTAAACTACAAGGTATATATTTTA
AAATATTCATTTATATAAATGATATTAAATTATAAATATATAATAAGTTTATACCTCACCTTTAT
ATATATATAATAACAATGAATATATATGGTTGTTATATGATTTAT


Right flanking sequence: Indices 802 -- 1301
TATTTATTTGAAGTAGCTAAAGGACCAATATAGAATAAAACATTCTCAATAGATGAAATAACAGG
AACAAAGATGATATAGTAACTAAAGTAGAAAGCTGTAGCGTATTGACCTAATTCAATAAATGGAA
CTTCTACATGTAATTGTCCTAAATTACCTAATAAGATAAAGTTAAATACGAATAAGTAGAAAGAT
AATTTAGATAATACTTTAAATGTATTACCTCTAACAACTGATCTATCAGTAATAGGTAAAATTAA
TAAGATTAAGATAGCAGCGAACATAGCAATAACTCCTCCTAATTTATCAGGAATTGATCTTAAAA
TAGCATAGAAAGGTAATAAATATCACTCAGGAACAATAGAAGCAGGTGTAACCATAGGGTTACCA
GGGATATAGTTATCAGCGTGACCTAATGTATTAGGTGAGAAGAAAACGAATAAACTAAAGAATAA
GATAAATACAAATACAGTAACTAAATCTTTAAAGATAAAGTAAGG


Done.