Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: C7593

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500

Length: 2399
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28


Found at i:37 original size:26 final size:26

Alignment explanation


    Indices: 1--104  Score: 199
    Period size: 26  Copynumber: 4.0  Consensus size: 26

                                      
          1 CCGCAAATGCTGAGAAAAGATTCTAA
          1 CCGCAAATGCTGAGAAAAGATTCTAA

                                      
         27 CCGCAAATGCTGAGAAAAGATTCTAA
          1 CCGCAAATGCTGAGAAAAGATTCTAA

                                      
         53 CCGCAAATGCTGAGAAAAGATTCTAA
          1 CCGCAAATGCTGAGAAAAGATTCTAA

                                 *    
         79 CCGCAAATGCTGAGAAAAGATCCTAA
          1 CCGCAAATGCTGAGAAAAGATTCTAA

        105 TAAACGATTT


Statistics
Matches: 77,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  26   77  1.00

ACGTcount: A:0.42, C:0.20, G:0.19, T:0.18


Consensus pattern (26 bp):   
CCGCAAATGCTGAGAAAAGATTCTAA

Left flanking sequence: None

Right flanking sequence: Indices 105 -- 604
TAAACGATTTACGAAACTCAAGTCTTGTGAACTTTAGGTTACCTGTGTCACTTGCTATATCAAAG
GAATATTACAAAAGCTAGCTAGAGAAAGTCATACACTGTGAGTCTATTCCTTATCGTCGCGATTA
ATGTATTTGAGGATTGTTTGAGCGGAATTTTGGGGTAAATTCAAACTAAGATATCAGTTCAGAGT
ATGCTTGCTATGTACGCAGACGCTCACATACACTTTGGAGTTAGTCGTTTCACTCATATCACGAT
ACCATGAGGAGACACATCAGCATTGCTCTCTGTTTTGAGATCGTTTTGAACAGACTCCATCACTA
GCACACTAGAATTAGACATTCTATGTTATTTAGCTATGAATACTTCGGTTGAGCTGTGAACTTTG
AACAAGATAGAAAATCAAGCAAAATAGAACGATTCCATTGTGGTATTTATAATCACCCGATTTTG
AAACTCATTCGGTCATTTCTTTTGGGTTGGCCCTTCCTTATATAT



Done.