Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: C7543

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500

Length: 1395
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24


Found at i:37 original size:26 final size:26

Alignment explanation


    Indices: 1--99  Score: 189
    Period size: 26  Copynumber: 3.8  Consensus size: 26

                                      
          1 CAAATGCTGAGAAAAGATTCTAACCG
          1 CAAATGCTGAGAAAAGATTCTAACCG

                  *                   
         27 CAAATGATGAGAAAAGATTCTAACCG
          1 CAAATGCTGAGAAAAGATTCTAACCG

                                      
         53 CAAATGCTGAGAAAAGATTCTAACCG
          1 CAAATGCTGAGAAAAGATTCTAACCG

                                 
         79 CAAATGCTGAGAAAAGATTCT
          1 CAAATGCTGAGAAAAGATTCT

        100 TCCTCACGGC


Statistics
Matches: 71,  Mismatches: 2, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  26   71  1.00

ACGTcount: A:0.43, C:0.17, G:0.19, T:0.20


Consensus pattern (26 bp):   
CAAATGCTGAGAAAAGATTCTAACCG

Left flanking sequence: None

Right flanking sequence: Indices 100 -- 599
TCCTCACGGCTTAGCCACGGCTATAGGCCGATGGCTGCAAACGCTACACGCAGCGCACGGAGAAA
ATTCTCCCATAGTTACAAAAAAACTTTACTTTTAGCCAATACAGAAATCTTTATAACTTACCCTT
TGCAACGTTAGTATCCCACCCATAGTATAGATACCGACGTTGCCCTGTAAGAACCTAAGACCACT
GTAAATCAATTGGCTAGAAAAGAACCGCTCACGACATCTACTATGTCTCAGCCCTCTTCTCCCCA
GGAGAACTCTCTCGCGAACGACAACTCTGAGTTGCTGAACCGTTCGACTGCCACCGGTCGAGCCA
GCAACCAGGCGTCTTTCCAACAAAAATTTATTGGAACGACTGTACTAAACAGCACGTTTTCGAGC
TCGAATTAATTTGCCCTTCGCGGGATTTGAACCTCTTACCTGTTTTGGACATAGACCATCTGAGG
ATATTCCTAATTTTACAAATTTCCGACAAATACAAACCAAAAAAC



Done.