Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: C7545

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500

Length: 1446
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25


Found at i:1125 original size:8 final size:8

Alignment explanation


    Indices: 1112--1136  Score: 50
    Period size: 8  Copynumber: 3.1  Consensus size: 8

       1102 TTGTTTTACG

                    
       1112 GGGTATCT
          1 GGGTATCT

                    
       1120 GGGTATCT
          1 GGGTATCT

                    
       1128 GGGTATCT
          1 GGGTATCT

             
       1136 G
          1 G

       1137 TTGTTGTCAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   17  1.00

ACGTcount: A:0.12, C:0.12, G:0.40, T:0.36


Consensus pattern (8 bp):   
GGGTATCT

Left flanking sequence: Indices 612 -- 1111
CTCACTGCCGGTATCCCCGGTGTCTTCCACGGTGTCAAGACTTACGTGCTTCAGAACGATGACGG
CCAGGTTTATGACACTCACTCGGTGCTGGCTGGGTTGGACTACCCCGGTGTTGGTCCCGAGTTGG
CCTTCTGGAAGGCCACCGGCCGTGCTGACTTTGTCGCTGCCACCGACGCTGAGGCTCTCCAGGGC
TTCAAGTGGTTGTCGCAGTACGAGGGTATTATCCCCGCTCTCGAGCTGTCCCACGCCATCTTTGG
TGCCGTTCAGTTGGCCAAGAAGATGAACCCCGACCAGCACATCATCGTCAACGTCTCCGGTAGAG
GTGACAAGGACGTGCAGCTGGTGGCTGAGGTGCTCCCCACGTTGGGCCCCAAGATCGACTGGAAC
CTTCGGTTCGAGTCTGACCCGACCAAGTCGGAGTAATGAGTAATGCAAGAAGTTAGATTTTGAGT
TATTGTAGAGCTATCGATGTATTGGCTATCTATGGTTGTTTTACG


Right flanking sequence: Indices 1137 -- 1446
TTGTTGTCAATTCGTAGCATCATTTCGTAGCATCATTTCGTGGGCACATTCTAGTCCCGGAACAC
ATCAAATAGCCGCTTGGCCCCGTTGGCCATGCCAAATGTGTTGTCCTGGACACCGCGTCTGGTCC
AGCAGTTGCAAAGCAGACACACCATTGAGATGTTGCCAGCACTTATCACCGTTTCTCTGTGAAGA
GATACTGCGTGCTTGCACTTCGAGCATTGGCCTTTAGGCTGGAGGGCGCGAGGGTTAACCATGGT
GAAGGGGACATAGCGTCGCTAACCTGGTGATATAGCCCGCAACTCTGCTC



Found at i:1186 original size:13 final size:13

Alignment explanation


    Indices: 1147--1177  Score: 62
    Period size: 13  Copynumber: 2.4  Consensus size: 13

       1137 TTGTTGTCAA

                         
       1147 TTCGTAGCATCAT
          1 TTCGTAGCATCAT

                         
       1160 TTCGTAGCATCAT
          1 TTCGTAGCATCAT

                 
       1173 TTCGT
          1 TTCGT

       1178 GGGCACATTC


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   18  1.00

ACGTcount: A:0.19, C:0.23, G:0.16, T:0.42


Consensus pattern (13 bp):   
TTCGTAGCATCAT

Left flanking sequence: Indices 647 -- 1146
CAAGACTTACGTGCTTCAGAACGATGACGGCCAGGTTTATGACACTCACTCGGTGCTGGCTGGGT
TGGACTACCCCGGTGTTGGTCCCGAGTTGGCCTTCTGGAAGGCCACCGGCCGTGCTGACTTTGTC
GCTGCCACCGACGCTGAGGCTCTCCAGGGCTTCAAGTGGTTGTCGCAGTACGAGGGTATTATCCC
CGCTCTCGAGCTGTCCCACGCCATCTTTGGTGCCGTTCAGTTGGCCAAGAAGATGAACCCCGACC
AGCACATCATCGTCAACGTCTCCGGTAGAGGTGACAAGGACGTGCAGCTGGTGGCTGAGGTGCTC
CCCACGTTGGGCCCCAAGATCGACTGGAACCTTCGGTTCGAGTCTGACCCGACCAAGTCGGAGTA
ATGAGTAATGCAAGAAGTTAGATTTTGAGTTATTGTAGAGCTATCGATGTATTGGCTATCTATGG
TTGTTTTACGGGGTATCTGGGTATCTGGGTATCTGTTGTTGTCAA


Right flanking sequence: Indices 1178 -- 1446
GGGCACATTCTAGTCCCGGAACACATCAAATAGCCGCTTGGCCCCGTTGGCCATGCCAAATGTGT
TGTCCTGGACACCGCGTCTGGTCCAGCAGTTGCAAAGCAGACACACCATTGAGATGTTGCCAGCA
CTTATCACCGTTTCTCTGTGAAGAGATACTGCGTGCTTGCACTTCGAGCATTGGCCTTTAGGCTG
GAGGGCGCGAGGGTTAACCATGGTGAAGGGGACATAGCGTCGCTAACCTGGTGATATAGCCCGCA
ACTCTGCTC


Done.