Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_344

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1931

Length: 3219
ACGTcount: A:0.23, C:0.27, G:0.27, T:0.24


Found at i:2757 original size:15 final size:15

Alignment explanation


    Indices: 2723--2766  Score: 60
    Period size: 15  Copynumber: 2.9  Consensus size: 15

       2713 ATGAGGGACG

                *   * *    
       2723 ACAGACGGCGCAACA
          1 ACAGGCGGAGTAACA

            *              
       2738 GCAGGCGGAGTAACA
          1 ACAGGCGGAGTAACA

                          
       2753 ACAGGCGGAGTAAC
          1 ACAGGCGGAGTAAC

       2767 GGCAGGACGT


Statistics
Matches: 24,  Mismatches: 5, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  15   24  1.00

ACGTcount: A:0.36, C:0.25, G:0.34, T:0.05


Consensus pattern (15 bp):   
ACAGGCGGAGTAACA

Found at i:2772 original size:15 final size:15

Alignment explanation


    Indices: 2734--2772  Score: 64
    Period size: 15  Copynumber: 2.6  Consensus size: 15

       2724 CAGACGGCGC

                           
       2734 AACAGCAGGCGGAGT
          1 AACAGCAGGCGGAGT

                *          
       2749 AACAACAGGCGGAGT
          1 AACAGCAGGCGGAGT

               *     
       2764 AACGGCAGG
          1 AACAGCAGG

       2773 ACGTTCTGTC


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  15   21  1.00

ACGTcount: A:0.36, C:0.21, G:0.38, T:0.05


Consensus pattern (15 bp):   
AACAGCAGGCGGAGT
Done.