Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_310

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 3560
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24


Found at i:2716 original size:21 final size:21

Alignment explanation


    Indices: 2676--2716  Score: 52
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2666 CTGCCCATCT

                           *     
       2676 CGTAACGACCGGCATGGGACC
          1 CGTAACGACCGGCATAGGACC

                         *       
       2697 CGTATACGA-CGGGATAGGAC
          1 CGTA-ACGACCGGCATAGGAC

       2717 ATCTTCTGCT


Statistics
Matches: 17,  Mismatches: 2, Indels: 2
        0.81            0.10        0.10

Matches are distributed among these distances:
  21   13  0.76
  22    4  0.24

ACGTcount: A:0.27, C:0.27, G:0.34, T:0.12


Consensus pattern (21 bp):   
CGTAACGACCGGCATAGGACC
Done.