Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_304

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 3608
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27


Found at i:1235 original size:18 final size:19

Alignment explanation


    Indices: 1199--1235  Score: 53
    Period size: 19  Copynumber: 2.0  Consensus size: 19

       1189 GTTCGCCCCG

                        *      
       1199 GAAATATCCATCGTCATTC
          1 GAAATATCCATCCTCATTC

                       *       
       1218 GAAATATCC-TGCTCATTC
          1 GAAATATCCATCCTCATTC

       1236 AATTGCTGAC


Statistics
Matches: 16,  Mismatches: 2, Indels: 1
        0.84            0.11        0.05

Matches are distributed among these distances:
  18    7  0.44
  19    9  0.56

ACGTcount: A:0.30, C:0.27, G:0.11, T:0.32


Consensus pattern (19 bp):   
GAAATATCCATCCTCATTC
Done.