Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_172

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 5877
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.24


Found at i:4932 original size:30 final size:30

Alignment explanation


    Indices: 4879--4973  Score: 134
    Period size: 30  Copynumber: 3.2  Consensus size: 30

       4869 TGGAGGCAGC

               *    *                     
       4879 GGCCGTTCGGGAACGATCCGGCGGGGGACG
          1 GGCTGTTCTGGAACGATCCGGCGGGGGACG

                           *  *           
       4909 GGCTGTTCTGGAACGGTCGGGCGGGGGACG
          1 GGCTGTTCTGGAACGATCCGGCGGGGGACG

                *        *            *  *
       4939 GGCTTTTCTGGAATGATCCGGCGGGGAACA
          1 GGCTGTTCTGGAACGATCCGGCGGGGGACG

                 
       4969 GGCTG
          1 GGCTG

       4974 CTCCACCGGC


Statistics
Matches: 54,  Mismatches: 11, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  30   54  1.00

ACGTcount: A:0.14, C:0.22, G:0.47, T:0.17


Consensus pattern (30 bp):   
GGCTGTTCTGGAACGATCCGGCGGGGGACG
Done.