Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_153

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 6272
ACGTcount: A:0.26, C:0.24, G:0.27, T:0.24


Found at i:2077 original size:15 final size:15

Alignment explanation


    Indices: 2057--2089  Score: 52
    Period size: 15  Copynumber: 2.2  Consensus size: 15

       2047 AGCTCGGCTC

                           
       2057 TCTGAAGAACGCCGA
          1 TCTGAAGAACGCCGA

                     *   * 
       2072 TCTGAAGAATGCCTA
          1 TCTGAAGAACGCCGA

               
       2087 TCT
          1 TCT

       2090 CCTGCGGAGA


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.30, C:0.24, G:0.21, T:0.24


Consensus pattern (15 bp):   
TCTGAAGAACGCCGA
Done.