Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_149

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 6342
ACGTcount: A:0.23, C:0.28, G:0.26, T:0.23


Found at i:603 original size:24 final size:24

Alignment explanation


    Indices: 572--617  Score: 57
    Period size: 24  Copynumber: 1.9  Consensus size: 24

        562 CGTGATCGGG

                    *     *         
        572 CCACCGGTTGTCGTTACGCCCCCT
          1 CCACCGGTCGTCGTCACGCCCCCT

               *       *    *     
        596 CCAGCGGTCGTGGTCAGGCCCC
          1 CCACCGGTCGTCGTCACGCCCC

        618 TCCCGCCCGT


Statistics
Matches: 17,  Mismatches: 5, Indels: 0
        0.77            0.23        0.00

Matches are distributed among these distances:
  24   17  1.00

ACGTcount: A:0.09, C:0.43, G:0.28, T:0.20


Consensus pattern (24 bp):   
CCACCGGTCGTCGTCACGCCCCCT
Done.