Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_142

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 6505
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.23

Warning! 10 characters in sequence are not A, C, G, or T


Found at i:3670 original size:165 final size:165

Alignment explanation


    Indices: 3379--3783  Score: 465
    Period size: 165  Copynumber: 2.5  Consensus size: 165

       3369 CATCACCACT

                 *     *                        *       *   *                
       3379 GGAGTCGTTACTACTTTGGCAGGCTCAGCAGGAGTTCCCGGCTCGACCGATGGAACCGGGACAGC
          1 GGAGTAGTTACGACTTTGGCAGGCTCAGCAGGAGTTACCGGCTCAACCAATGGAACCGGGACAGC

                      *       **       ** *            *      **           * 
       3444 GGCAACCTTCCACACGCCTTACGGCATTGCGACAGACGGGACCTCCCTCTTTGTAGCGGATACTG
         66 GGCAACCTTCAACACGCCAGACGGCATCACCACAGACGGGACCACCCTCTACGTAGCGGATACGG

                *                              
       3509 GCAATAATACCATCCGAAAGATCGACATTGCATCA
        131 GCAACAATACCATCCGAAAGATCGACATTGCATCA

                          *                                             *   *
       3544 GGAGTAGTTACGACCTTGGCAGGCTCAGCAGGAGTTACCGGCTCAACCAATGGAACCGGGGCAGG
          1 GGAGTAGTTACGACTTTGGCAGGCTCAGCAGGAGTTACCGGCTCAACCAATGGAACCGGGACAGC

                *                **          *   *       *   *     *         
       3609 GGCATCCTTCAACCAC-CCAGCTGGCATCACCATAGATGGGACCATCCTGTACGTCGCGGATACG
         66 GGCAACCTTCAA-CACGCCAGACGGCATCACCACAGACGGGACCACCCTCTACGTAGCGGATACG

              *   *   *          *   *    *     
       3673 GGTAACGATATCATCCGAAAGGTCGTCATTTCATCA
        130 GGCAACAATACCATCCGAAAGATCGACATTGCATCA

                 *                  **      *** *       *****   *            
       3709 GGAGTGGTTACGACTTTGGCAGGCATAGCAGGGAATCCCGGCTCCTTTGATGCAACCGGGACAGC
          1 GGAGTAGTTACGACTTTGGCAGGCTCAGCAGGAGTTACCGGCTCAACCAATGGAACCGGGACAGC

                 *    
       3774 GGCAAGCTTC
         66 GGCAACCTTC

       3784 GCCCGGCCGG


Statistics
Matches: 188,  Mismatches: 51, Indels: 2
        0.78            0.21        0.01

Matches are distributed among these distances:
 165  185  0.98
 166    3  0.02

ACGTcount: A:0.24, C:0.28, G:0.28, T:0.20


Consensus pattern (165 bp):   
GGAGTAGTTACGACTTTGGCAGGCTCAGCAGGAGTTACCGGCTCAACCAATGGAACCGGGACAGC
GGCAACCTTCAACACGCCAGACGGCATCACCACAGACGGGACCACCCTCTACGTAGCGGATACGG
GCAACAATACCATCCGAAAGATCGACATTGCATCA
Done.