Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_14

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 17892
ACGTcount: A:0.23, C:0.26, G:0.27, T:0.24


Found at i:8291 original size:21 final size:21

Alignment explanation


    Indices: 8265--8304  Score: 59
    Period size: 21  Copynumber: 1.9  Consensus size: 21

       8255 TCCTGAACCA

                           *     
       8265 AGTGGACAACCTAACCAAGCG
          1 AGTGGACAACCTAACAAAGCG

                   *    *      
       8286 AGTGGACGACCTCACAAAG
          1 AGTGGACAACCTAACAAAG

       8305 GAGCTGCGGG


Statistics
Matches: 16,  Mismatches: 3, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   16  1.00

ACGTcount: A:0.38, C:0.28, G:0.25, T:0.10


Consensus pattern (21 bp):   
AGTGGACAACCTAACAAAGCG
Done.