Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_121

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 7164
ACGTcount: A:0.22, C:0.28, G:0.25, T:0.25


Found at i:2698 original size:27 final size:27

Alignment explanation


    Indices: 2647--2698  Score: 62
    Period size: 27  Copynumber: 1.9  Consensus size: 27

       2637 CGATGACCCG

                    * *     *   *      
       2647 GAGCCCGTGCTTCTCCGCAATCTGCAT
          1 GAGCCCGTCCATCTCCACAAACTGCAT

               *               *     
       2674 GAGGCCGTCCATCTCCACAGACTGC
          1 GAGCCCGTCCATCTCCACAAACTGC

       2699 CCATACAGGT


Statistics
Matches: 19,  Mismatches: 6, Indels: 0
        0.76            0.24        0.00

Matches are distributed among these distances:
  27   19  1.00

ACGTcount: A:0.17, C:0.38, G:0.23, T:0.21


Consensus pattern (27 bp):   
GAGCCCGTCCATCTCCACAAACTGCAT
Done.