Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_118

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 7306
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26


Found at i:1080 original size:18 final size:18

Alignment explanation


    Indices: 1057--1152  Score: 164
    Period size: 18  Copynumber: 5.3  Consensus size: 18

       1047 CGGCCAACAA

                    *         
       1057 GGACCTGCTGGTGCAACG
          1 GGACCTGCCGGTGCAACG

                    *  *      
       1075 GGACCTGCTGGGGCAACG
          1 GGACCTGCCGGTGCAACG

                              
       1093 GGACCTGCCGGTGCAACG
          1 GGACCTGCCGGTGCAACG

                              
       1111 GGACCTGCCGGTGCAACG
          1 GGACCTGCCGGTGCAACG

                       *      
       1129 GGACCTGCCGGGGCAACG
          1 GGACCTGCCGGTGCAACG

                  
       1147 GGACCT
          1 GGACCT

       1153 TCAGGAGCAG


Statistics
Matches: 74,  Mismatches: 4, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  18   74  1.00

ACGTcount: A:0.17, C:0.31, G:0.41, T:0.11


Consensus pattern (18 bp):   
GGACCTGCCGGTGCAACG

Done.