Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_117

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 7564
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.26


Found at i:4813 original size:15 final size:15

Alignment explanation


    Indices: 4793--4827  Score: 56
    Period size: 15  Copynumber: 2.3  Consensus size: 15

       4783 CCTTCAGTGA

                        *  
       4793 CGGCCTGTTTTTTGT
          1 CGGCCTGTTTTTCGT

                         * 
       4808 CGGCCTGTTTTTCTT
          1 CGGCCTGTTTTTCGT

                 
       4823 CGGCC
          1 CGGCC

       4828 ACGGATTTGG


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  15   18  1.00

ACGTcount: A:0.00, C:0.29, G:0.26, T:0.46


Consensus pattern (15 bp):   
CGGCCTGTTTTTCGT
Done.