Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_107

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 8146
ACGTcount: A:0.24, C:0.27, G:0.29, T:0.20


Found at i:3232 original size:18 final size:18

Alignment explanation


    Indices: 3206--3241  Score: 51
    Period size: 18  Copynumber: 2.0  Consensus size: 18

       3196 GGGAATATTT

                      *       
       3206 CGAGACTCTCCAGAAGGC
          1 CGAGACTCTCAAGAAGGC

                *    *        
       3224 CGAGGCTCTTAAGAAGGC
          1 CGAGACTCTCAAGAAGGC

       3242 ACTGGAGCGG


Statistics
Matches: 15,  Mismatches: 3, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.28, C:0.28, G:0.31, T:0.14


Consensus pattern (18 bp):   
CGAGACTCTCAAGAAGGC
Done.