Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: MAG.C2.12_contig_10

Parameters: 2 5 7 80 10 50 2000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 2000

Length: 18583
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:7746 original size:30 final size:30

Alignment explanation


    Indices: 7705--7765  Score: 73
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       7695 CATTATCTTT

               *         *  *          *  
       7705 ACGGACAAGGAATCAATAAATCAACATTTA
          1 ACGAACAAGGAATAAAAAAATCAACATATA

                  *           *  *        
       7735 ACGAACGAGGAATAAAAAGATTAACATATA
          1 ACGAACAAGGAATAAAAAAATCAACATATA

             
       7765 A
          1 A

       7766 AAAATTGCTT


Statistics
Matches: 24,  Mismatches: 7, Indels: 0
        0.77            0.23        0.00

Matches are distributed among these distances:
  30   24  1.00

ACGTcount: A:0.54, C:0.13, G:0.15, T:0.18


Consensus pattern (30 bp):   
ACGAACAAGGAATAAAAAAATCAACATATA
Done.