CRISPRs arrays and Cas genes found in the submitted sequence(s)

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Sequence: Chr_1

Sequence description : Unknown
Length (bp): 4782682

AT%: 49.2649521753694

Number of CRISPRs candidates: 4

CRISPRs

Candidate number 1

CRISPR ID : Chr_1_1

Left flanking sequence: (100 bp [start=24253;end=24352], AT%=51): ACCTGTGTGCGTTAGCAAGCCATTCGATGCAGCAAACGGATCGGCAGATTATCGAGATTATGGCGAGCAAGGCCAGATAAACGCCAGGTTTTGAGTATTG
CRISPR start position: 24353 ---------- CRISPR end position: 24470 ---------- CRISPR length: 117
DR consensus: TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG
DR length: 40 Number of spacers: 1
Consensus Repeat ID (Nb in CRISPRdb): Unknown (0)
CRISPRDirection: ND
Potential orientation (AT%): -
Conservation of DRs based on Entropy: 97.5
Conservation of Spacers: 100
Evidence Level: 1

24353	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	GTGCTCAACTTGTTGATGTTGTTGTGTTTTGTACCTGA	24430
24431	TGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGG		24470

Right flanking sequence: (100 bp [start=24471;end=24570], AT%=53): TTGTTTAATTCGTTAATGTTGTTGGATTTTGTAGGCCGGATAAGGCGTTTTCGCCGCATCCGGCAACCTGTCTTTACGCGGTAGCTTCATCCTCGGCTAA

Candidate number 2

CRISPR ID : Chr_1_2

Left flanking sequence: (100 bp [start=398805;end=398904], AT%=71): TGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAG
CRISPR start position: 398905 ---------- CRISPR end position: 399361 ---------- CRISPR length: 456
DR consensus: TGAGTTCCCCGCGCCAGCGGGGATAAACCG
DR length: 30 Number of spacers: 7
Consensus Repeat ID (Nb in CRISPRdb): Unknown (0)
CRISPRDirection: ND
Potential orientation (AT%): -
Conservation of DRs based on Entropy: 79.4499194414943
Conservation of Spacers: 2.32558139534884
Evidence Level: 4

398905	AGAGTTCCCCGCGCCAGCGGGGATAAACCG	GAAAAAACCGCGAGCGCAACAATTCAAATTC	398965
398966	GGAGTTCCCCGCGCCAGCGGGGATAAACCG	CTTGAAACCCTGCCTGATATATCGCCGTTAT	399026
399027	TGAGTTCCCCGCGCCAGCGGGGATAAACCG	ATCTCTATGTCAAAAGATGAAATTCAGCAAA	399087
399088	TGAGTTCCCCGCGCCAGCGGGGATAAACCG	GCACGGGCCAGTTCCCACATTTCCGGCGATA	399148
399149	TGAGTTCCCCGCGCCAGCGGGGATAAACCG	CAACGCGGTCAGCCGAAATATGACGCGCCGG	399209
399210	TGAGTTCCCCGCGCCAGCGGGGATAAACCG	AATCAAACTATTCATGTAGCCGGTATCGCAG	399270
399271	AGAGTTCCCCGCGCCAGCGAGGATAAACCG	TTATCGGTCATCAACTATAGCGCGTATTTAC	399331
399332	TAAGTTCCCCGTTCCAACACGAATAATCCG		399361

Right flanking sequence: (100 bp [start=399362;end=399461], AT%=72): ATAATATCGACGATATCAACCTAATATTATCAAATGTTAAAGGTTCTAATTTAAGAGGGAATTTAATGTCTACGTTAATGGAAAAAGAATCTCTCCTGAA

Candidate number 3

CRISPR ID : Chr_1_3

Left flanking sequence: (100 bp [start=407606;end=407705], AT%=51): ACGAAATGATCTCCGACCTGGCCCCTGTTGATTTGCTGATTCAGCGAGCAGGACGATTACAGCGGCATATCCGCGATATTAATGGTCAGTTAAAGCGTGA
CRISPR start position: 407706 ---------- CRISPR end position: 407857 ---------- CRISPR length: 151
DR consensus: CGTGTTCCCCGCGCCAGCGGGGATAAACCG
DR length: 30 Number of spacers: 2
Consensus Repeat ID (Nb in CRISPRdb): Unknown (0)
CRISPRDirection: ND
Potential orientation (AT%): +
Conservation of DRs based on Entropy: 93.8780277729701
Conservation of Spacers: 34.2105263157895
Evidence Level: 1

407706	CGTGTTCCCCGCGCCAGCGGGGATAAACCG	CAAAATTTAAAATCATTTAAGCTTGTAAAAC	407766
407767	CGTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGGTGGCTGGATTGAAAAAGAAGATAATCT	407827
407828	GGTGTTCCCCGCGTCAGCGGGGATAAACCG		407857

Right flanking sequence: (100 bp [start=407858;end=407957], AT%=44): GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGC

Candidate number 4

CRISPR ID : Chr_1_4

Left flanking sequence: (100 bp [start=978299;end=978398], AT%=47): CCATGAGTGTGTCCTGTTGGGAGTTTAATGCCGGATAAGGCATTTTACGCCGCATCCTGTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAAT
CRISPR start position: 978399 ---------- CRISPR end position: 978516 ---------- CRISPR length: 117
DR consensus: CCGAGCCGTAGGCCGGATAAGGCGTTCACGC
DR length: 31 Number of spacers: 1
Consensus Repeat ID (Nb in CRISPRdb): Unknown (0)
CRISPRDirection: ND
Potential orientation (AT%): .
Conservation of DRs based on Entropy: 96.7741935483871
Conservation of Spacers: 100
Evidence Level: 1

978399	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	TGCATCCGGCACCCGGAGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAA	978485
978486	CCGAGCCGTAGGCCGGATAAGGCGTTTACGC		978516

Right flanking sequence: (100 bp [start=978517;end=978616], AT%=42): CGCATCCGGCATCTCAATATCAGATCTTACATGCGCCGCTTTCGCAGCCATCGTCCTGGATTGACGGCACCAGATCGTCCTGCGCGTCTTCAGCACCGTC

Cas system(s) and genes