Call: rda(X = otu, scale = FALSE) Partitioning of variance: Inertia Proportion Total 0.1887 1 Unconstrained 0.1887 1 Eigenvalues, and their contribution to the variance Importance of components: PC1 PC2 PC3 PC4 PC5 PC6 PC7 Eigenvalue 0.1259 0.03228 0.01076 0.006223 0.005484 0.002431 0.00229 Proportion Explained 0.6671 0.17103 0.05703 0.032972 0.029056 0.012879 0.01213 Cumulative Proportion 0.6671 0.83817 0.89520 0.928176 0.957232 0.970111 0.98224 PC8 PC9 PC10 PC11 Eigenvalue 0.001479 0.001367 0.0002997 0.0002056 Proportion Explained 0.007837 0.007244 0.0015877 0.0010892 Cumulative Proportion 0.990079 0.997323 0.9989108 1.0000000 Scaling 2 for species and site scores * Species are scaled proportional to eigenvalues * Sites are unscaled: weighted dispersion equal on all dimensions * General scaling constant of scores: 1.200377 Species scores PC1 PC2 PC3 PC4 PC5 PC6 NCBI1115758 -0.481504 0.079575 4.356e-02 -2.571e-02 0.0080255 -3.408e-02 NCBI1249 0.492398 -0.211446 6.911e-02 2.016e-02 0.0528450 -2.579e-02 NCBI1351 0.188339 -0.177708 2.577e-02 -9.394e-02 -0.0920012 1.456e-02 NCBI1352 0.274148 -0.056111 5.767e-02 2.133e-02 0.0428004 6.120e-03 NCBI1358 0.393332 0.228229 -4.349e-02 9.067e-03 -0.0265728 -3.548e-02 NCBI1211417 -0.100044 -0.081939 4.077e-02 1.645e-01 -0.0954459 -6.072e-03 NCBI1308 0.321476 0.160430 -2.632e-02 1.906e-02 -0.0261798 2.495e-02 NCBI1377 -0.020478 -0.136568 -1.949e-01 9.413e-03 0.0115828 8.296e-03 NCBI1297617 0.088296 -0.008813 5.616e-03 -7.636e-02 -0.0714787 -7.120e-03 NCBI1314 -0.007948 0.019143 -6.554e-04 -8.865e-03 -0.0535892 6.886e-02 NCBI1307 0.015889 0.021058 -4.972e-02 4.223e-03 0.0152272 -2.665e-02 NCBI1359 0.206544 0.120990 -3.112e-02 -9.415e-04 -0.0237681 -2.688e-02 NCBI1311 0.043615 -0.013447 -3.266e-02 1.315e-02 0.0238032 2.625e-02 NCBI1280 -0.002798 0.001141 -2.350e-02 2.113e-02 -0.0342807 1.349e-02 NCBI1296 -0.004475 -0.144819 -1.076e-01 -2.130e-03 -0.0216257 -4.868e-02 NCBI1245 0.146814 0.088195 -1.940e-02 5.808e-03 -0.0129829 -1.538e-02 NCBI1288 -0.023089 -0.046848 -7.352e-02 9.591e-03 -0.0148293 2.300e-03 NCBI1255 0.095801 0.004653 7.695e-03 7.855e-03 0.0296113 1.517e-02 NCBI116085 0.038848 -0.003310 4.400e-02 4.891e-03 -0.0209158 -7.836e-03 NCBI1164002 0.072131 -0.009968 -9.201e-03 1.595e-02 0.0218284 3.845e-02 NCBI105841 0.011010 -0.030253 2.497e-02 1.043e-03 -0.0284067 -1.430e-02 NCBI1353 0.047843 -0.059271 -9.394e-03 9.741e-03 0.0103002 -7.014e-03 NCBI1348 -0.003207 -0.037458 3.714e-02 -1.162e-02 -0.0275824 -2.520e-02 NCBI1155388 0.002112 -0.002049 -5.357e-03 1.300e-02 -0.0152796 -4.062e-03 NCBI1246 0.071321 0.035170 -9.104e-03 1.340e-03 -0.0111708 1.068e-02 NCBI1161942 -0.002361 -0.009911 -1.477e-02 -8.492e-03 -0.0076754 5.124e-03 NCBI1363 -0.010890 0.015799 -2.426e-02 5.562e-03 0.0002092 1.831e-02 NCBI1041504 -0.026603 -0.009091 -7.222e-03 3.528e-02 -0.0207219 5.746e-03 NCBI1288121 0.003717 0.004781 -7.278e-03 -5.165e-03 -0.0059981 3.907e-03 NCBI1366 0.047816 0.019253 -4.065e-03 2.127e-03 -0.0071115 1.514e-02 NCBI1331682 0.040951 -0.014477 3.764e-03 3.479e-03 0.0187409 1.455e-02 NCBI137591 0.035017 0.001306 -2.339e-03 7.190e-04 0.0019376 3.612e-03 NCBI1035112 -0.003894 -0.021548 2.793e-02 -5.647e-03 -0.0340729 -8.763e-03 NCBI1131822 0.016255 0.017939 -3.582e-03 9.632e-03 -0.0112777 -1.887e-02 NCBI1354 0.005397 -0.012518 -1.061e-02 -1.034e-04 0.0016841 8.391e-05 NCBI136857 0.003679 -0.013644 -1.683e-02 1.561e-03 0.0015457 1.970e-04 NCBI1329522 0.002460 0.003047 3.048e-03 -2.084e-02 -0.0153166 -7.425e-03 NCBI1348855 0.028474 0.015406 -6.081e-03 2.451e-04 -0.0094323 7.732e-03 NCBI1334 -0.001769 -0.008403 1.127e-02 -4.681e-03 -0.0084332 -1.021e-02 NCBI12417 -0.006294 0.009343 6.679e-04 7.442e-03 0.0002691 -7.748e-03 NCBI114050 0.030231 0.004751 4.100e-03 1.098e-03 0.0067013 9.033e-03 NCBI1032851 0.023040 -0.006532 6.796e-05 1.465e-03 0.0047773 4.224e-03 NCBI1329 0.010085 0.005332 -3.927e-03 1.464e-03 -0.0031290 -3.064e-03 NCBI1282 -0.003034 -0.017475 -1.923e-03 1.786e-03 -0.0107261 -6.163e-03 NCBI1335 0.005716 0.011631 -8.564e-03 -9.058e-06 -0.0030890 -7.322e-04 NCBI1197430 -0.005806 0.013804 -8.119e-03 1.267e-03 0.0005940 -8.633e-03 NCBI1272 0.020267 0.004396 -3.181e-03 -8.503e-04 -0.0011390 -4.783e-04 NCBI1326 0.010361 0.011545 4.335e-04 2.928e-03 -0.0049886 -9.215e-03 NCBI1214906 0.017004 0.002290 -4.554e-03 -5.203e-03 -0.0038515 -6.374e-03 NCBI1254 0.005330 -0.013081 6.323e-03 7.930e-03 -0.0042219 -8.587e-03 Site scores (weighted sums of species scores) PC1 PC2 PC3 PC4 PC5 PC6 C1 -0.3869 0.18950 0.03069 0.21699 0.16420 -0.1727 C2 -0.3267 0.11456 -0.28052 -0.24213 0.37578 0.2038 C3 -0.3451 0.15663 0.05767 0.19926 -0.25809 0.6041 T10 -0.1148 -0.27684 0.52853 0.67507 -0.39283 -0.3026 T11 -0.2763 0.12217 0.38148 -0.31293 0.47527 -0.2767 T12 0.1436 -0.81949 -0.47224 -0.10827 -0.01249 -0.3441 TC1 0.5022 0.30031 -0.09351 0.28008 0.05551 0.2972 TC2 0.5393 0.22788 -0.13827 -0.22933 -0.42938 0.1019 TC3 0.2441 0.55681 -0.10601 -0.04334 -0.01082 -0.6893 TC4 0.4813 -0.34729 0.35953 0.07880 0.61326 0.3404 C5 -0.3166 -0.05597 -0.63665 0.22185 -0.07378 0.1102 T13 -0.1441 -0.16828 0.36931 -0.73605 -0.50663 0.1279